BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11297
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 80 FNGSSHIVMKTLKAYN-----KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
FNG S++ +K L + K+++E+ F G+LLYN Q DG GDFVSLA+ N
Sbjct: 14 FNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN 71
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
P ++ + C+S+PCQN ATC D + G F+C+C P + G C
Sbjct: 39 PRCEIDVNECVSNPCQNDATCLD-QIGEFQCICMPGYEGVHC 79
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C S PC + C D+ + F+C C FTG+LC
Sbjct: 86 CASSPCLHNGRCLDKIN-EFQCECPTGFTGHLC 117
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
SS++ + TL+AY + + +FKT DG++LYN DG DF+ + +V
Sbjct: 846 SSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSG--DGN-DFIVVELV 891
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 28 RLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYL---CHTRAPPKLYDTPAFNGSS 84
R PCLS+PC+N C+ DG +C TGYL C A YD F
Sbjct: 616 RETAKPCLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF---M 669
Query: 85 HIVMKTLKAYNKLSIEIEFKTNKNDGILL 113
I + + + + F++ + GIL+
Sbjct: 670 KIQLPVVMHTEAEDVSLRFRSQRAYGILM 698
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKT 90
+ C C N C + DG F C CS F+G LC+ ++ G I K
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFS----KGGGQITYKW 1072
Query: 91 ----LKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
+ + I F T + + +L+ + G GD++ L I
Sbjct: 1073 PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHI 1115
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 28 RLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYL---CHTRAPPKLYDTPAFNGSS 84
R PCLS+PC+N C+ DG +C TGYL C A YD F
Sbjct: 616 RETAKPCLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF---M 669
Query: 85 HIVMKTLKAYNKLSIEIEFKTNKNDGILL 113
I + + + + F++ + GIL+
Sbjct: 670 KIQLPVVMHTEAEDVSLRFRSQRAYGILM 698
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
SS++ + TL+AY + + +FKT DG++LYN DG DF+ + +V
Sbjct: 855 SSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSG--DGN-DFIVVELV 900
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKT 90
+ C C N C + DG F C CS F+G LC+ ++ G I K
Sbjct: 1027 TTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFS----KGGGQITYKW 1081
Query: 91 ----LKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
+ + I F T + + +L+ + G GD++ L I
Sbjct: 1082 PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHI 1124
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 28 RLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYL---CHTRAPPKLYDTPAFNGSS 84
R PCLS+PC+N C+ DG +C TGYL C A YD F
Sbjct: 391 RETAKPCLSNPCKNNGMCR---DGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF---M 444
Query: 85 HIVMKTLKAYNKLSIEIEFKTNKNDGILL 113
I + + + + F++ + GIL+
Sbjct: 445 KIQLPVVMHTEAEDVSLRFRSQRAYGILM 473
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
SS++ + TL+AY + + +FKT DG++LYN DG DF+ + +V
Sbjct: 630 SSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSG--DGN-DFIVVELV 675
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKT 90
+ C C N C + DG F C CS F+G LC+ ++ G I K
Sbjct: 802 TTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFS----KGGGQITYKW 856
Query: 91 ----LKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
+ + I F T + + +L+ + G GD++ L I
Sbjct: 857 PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHI 899
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
SS++ + TL+AY + + +FKT DG++LYN DG DF+ + +V
Sbjct: 14 SSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSG--DGN-DFIVVELV 59
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
+ C C N C + DG F C CS F+G LC+ ++ G I K
Sbjct: 185 STTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGTTYIFS----KGGGQITYK 239
Query: 90 T----LKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
+ + I F T + + +L+ + G GD++ L I
Sbjct: 240 WPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHI 283
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
C+S+PCQN ATC D + G F+C+C P + G C
Sbjct: 5 CISNPCQNDATCLD-QIGEFQCICMPGYEGVYCE 37
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 25 PNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
P ++ + C+S+PCQN ATC D + G F+C+C P + G C
Sbjct: 37 PRCEIDVNECVSNPCQNDATCLD-QIGEFQCICMPGYEGVHC 77
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
SPC+S PC + +CQD G + C CSP + G C
Sbjct: 6 SPCISQPCLHNGSCQDSIWG-YTCTCSPGYEGSNC 39
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization,
Preclinical Pharmacokinetics, Pharmacodynamics, And
Efficacy In A Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue
Factor
Length = 152
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ C C P F G C T +L
Sbjct: 50 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETHKDDQL 89
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue
Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor
Viia Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation
Factor Viia With Human Soluble Tissue Factor In The
Presence Of Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ + C C P F G C T +L
Sbjct: 50 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQL 89
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE
TISSUE Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia ,
Souluble Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ + C C P F G C T +L
Sbjct: 50 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQL 89
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ + C C P F G C T +L
Sbjct: 50 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQL 89
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ C C P F G C T +L
Sbjct: 2 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETHKDDQL 41
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ C C P F G C T +L
Sbjct: 9 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETHKDDQL 48
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ C C P F G C T +L
Sbjct: 3 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETHKDDQL 42
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKL 74
C S PCQNG +C+D+ + C C P F G C T +L
Sbjct: 2 CASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCETHKDDQL 41
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
C S PCQNG +C+D+ C C P F G C T
Sbjct: 6 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETH 40
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
C S PCQNG +C+D+ C C P F G C T
Sbjct: 6 CASSPCQNGGSCKDQLQSYI-CFCLPAFEGRNCETH 40
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 38 PCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLY---DTPAFNGSSHIVMKTLKAY 94
P Q AT Q+ L +P++ YL +RA L D F G++ +V AY
Sbjct: 46 PIQGLATLQEAGPAQLSFLANPQYRKYLPESRAGAVLLTAADADGFAGTALVVANPYLAY 105
Query: 95 NKLSIEIEFKTNKNDGI 111
LS + K GI
Sbjct: 106 ASLSHLFDRKPKAAAGI 122
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFEC-LCSPEFTGYLCH 67
CLS+PC GA C DG + C C F G H
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH 40
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 39 CQNGATCQDEEDGLFECLCSPEFTGYLC 66
CQNG TC + CLC +TG LC
Sbjct: 373 CQNGGTCHNN----VRCLCPAAYTGILC 396
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 39 CQNGATCQDEEDGLFECLCSPEFTGYLCHT----RAPPKLYDTP 78
C NG C D CLCSP + G C R PK+ D P
Sbjct: 295 CNNGEMC----DRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLP 334
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 83 SSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLY 114
+SHI + K N+L+IE+E +T G+L Y
Sbjct: 43 NSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFY 76
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 97 LSIEIEFKTNKNDGILL-YNQQNLDGTG 123
L +E EF+T + G+LL + Q +DG G
Sbjct: 234 LLVEFEFRTTRPTGVLLGVSSQKMDGMG 261
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 83 SSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLY 114
+SHI + K N+L+IE+E +T G+L Y
Sbjct: 43 NSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFY 76
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 97 LSIEIEFKTNKNDGILL-YNQQNLDGTG 123
L +E EF+T + G+LL + Q +DG G
Sbjct: 234 LLVEFEFRTTRPTGVLLGVSSQKMDGMG 261
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
C S+PC NG +C+D+ + +EC C F G C
Sbjct: 6 CESNPCLNGGSCKDDINS-YECWCPFGFEGKNCE 38
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 37 HPCQNGATCQDEEDGLFECLCSPEF--TGYLCHTR 69
HP C + DG +EC+ P F +GY R
Sbjct: 53 HPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIR 87
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRA 70
C +PC NG C+D+ + +EC C F G C A
Sbjct: 51 CEPNPCLNGGLCKDDINS-YECWCQVGFEGKNCELDA 86
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 40 QNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKL-- 97
+NG QD + C TG H +D+P F+ S + LKA L
Sbjct: 142 ENGEKVQDLQ---VVGTCGKRNTGTSVHFWPDETFFDSPRFSVSR--LTHVLKAKAVLCP 196
Query: 98 SIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAI 130
+EI FK N+ + Q DG D+++ A+
Sbjct: 197 GVEITFKDEINNTEQRWCYQ--DGLNDYLAEAV 227
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC +H C++G C+ +E+ C+C
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVCQ 30
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFEC-LCSPEFTGYLCH 67
CLS+PC GA C DG + C C F G H
Sbjct: 3 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH 37
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCT 45
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC S+PCQN C ++C C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCT 28
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 8 PCCSNPCQNRGECMSTGFDQYKCDCT 33
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 7 PCCSNPCQNRGECMSTGFDQYKCDCT 32
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 97 LSIEIEFKTNKNDGILL-YNQQNLDGTG 123
L +E EF+T + G+LL + Q +DG G
Sbjct: 31 LLVEFEFRTTRPTGVLLGISSQKMDGMG 58
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 7 PCCSNPCQNRGECMSTGFDQYKCDCT 32
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 9 PCCSNPCQNRGECMSTGFDQYKCDCT 34
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 26 PCCSNPCQNRGECMSTGFDQYKCDCT 51
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC S+PCQN C ++C C+
Sbjct: 8 PCCSNPCQNRGECMSTGFDQYKCDCT 33
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCS 58
+PC +H C++G C+ +E+ C+C
Sbjct: 5 NPCQNHHCKHGKVCELDENNTPMCVCQ 31
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS 58
PC +H C++G C+ +E+ C+C
Sbjct: 1 PCQNHHCKHGKVCELDENNTPMCVCQ 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,880,498
Number of Sequences: 62578
Number of extensions: 147447
Number of successful extensions: 382
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 84
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)