RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11297
(132 letters)
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 76.6 bits (188), Expect = 1e-17
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 13 LSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPE-FTGYLCHTRAP 71
+S ++ + Q + C C N C + DG F C CS F+G LC+
Sbjct: 167 ISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGT 225
Query: 72 PKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
++ + + + I F T + + +L+ + G GD++ L I
Sbjct: 226 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIH 284
Query: 132 N 132
Sbjct: 285 Q 285
Score = 56.6 bits (136), Expect = 1e-10
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 80 FNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
SS++ + TL+AY + + +FKT DG++LYN DF+ + +V
Sbjct: 11 KTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVK 60
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 73.7 bits (180), Expect = 2e-16
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 13 LSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHTRAP 71
+S ++ + Q + C C N C + DG F C CS F+G LC+
Sbjct: 999 ISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGT 1057
Query: 72 PKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
++ + + + I F T + + +L+ + G GD++ L I
Sbjct: 1058 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIH 1116
Query: 132 N 132
Sbjct: 1117 Q 1117
Score = 70.6 bits (172), Expect = 2e-15
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLK 92
C NG C +D C CS TG+ + K F GS + +
Sbjct: 192 EGEGGVCLNGGVCSVVDDQ-AVCDCS--RTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248
Query: 93 AY---NKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+ I + FKT + +G++L+ ++ D+V+LA+ N
Sbjct: 249 NPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKN 287
Score = 61.0 bits (147), Expect = 4e-12
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSP-EFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
PCLS+PC+N C+D + + C CS + G C A +++GS + ++
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNR-YVCDCSGTGYLGRSCEREATV-----LSYDGSMFMKIQ 672
Query: 90 TLKAYN--KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+ + + F++ + GIL+ + D + L +
Sbjct: 673 LPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDA 715
Score = 57.9 bits (139), Expect = 5e-11
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
L NG D C + A P + T SS++ + TL+A
Sbjct: 801 HLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTK----SSYVALATLQA 856
Query: 94 YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
Y + + +FKT DG++LYN DF+ + +V
Sbjct: 857 YTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVK 892
Score = 52.2 bits (124), Expect = 4e-09
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 81 NGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
A + + + KT G++LY G DF+ L +
Sbjct: 6 AEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDE--GFCDFLELILTR 55
Score = 51.4 bits (122), Expect = 1e-08
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 12/111 (10%)
Query: 34 CLSHPCQNGATCQDEE-DGLFECLCSPEFTGYLCHTRAPPKLYDTPAFN-GSSHIVMKTL 91
CL + E + + G + D F S I +
Sbjct: 379 CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW 438
Query: 92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGT----------GDFVSLAIVN 132
A SI +F+T + +G++L++ DF ++ +++
Sbjct: 439 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 489
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 61.8 bits (150), Expect = 5e-13
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 77 TPAFNGSSHIVMKTLKAYN-----KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIV 131
FNG S++ +K L + K+++E+ F G+LLYN Q DG GDFVSLA+
Sbjct: 11 LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALH 70
Query: 132 N 132
N
Sbjct: 71 N 71
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 60.5 bits (146), Expect = 6e-12
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 24 SPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGS 83
NLR E + C + L SP++ G + T +F
Sbjct: 341 LRNLRPEVNVKKYSGCLKDIEISRTP---YNILSSPDYVGVTKGC--SLENVYTVSFPKP 395
Query: 84 SHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+ + + I + F T GI+L G + ++ +
Sbjct: 396 GFVELAAVSIDVGTEINLSFSTRNESGIILLGSG---GGQAYYAIFLNK 441
Score = 60.1 bits (145), Expect = 7e-12
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIV--MKTL 91
C+ + E C F+G + +
Sbjct: 167 CMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGT-----IQFDGEGYALVSRPIR 221
Query: 92 KAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
N ++ +F+T + +L+Y DF+S+ + +
Sbjct: 222 WYPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSD 260
Score = 53.2 bits (127), Expect = 2e-09
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 80 FNGSSHIVMK-TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
G + +K + +I + KT D +L Y DF+++ +
Sbjct: 15 SGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSA--KFIDFLAIEMRK 66
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 58.1 bits (140), Expect = 3e-11
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 32 SPCLSH--PCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVM- 88
+P P C E + S +F + +SHI +
Sbjct: 8 TPAFPFPVPTMVHGPCVAESEPAL-LTGSKQF-----------------GLSRNSHIAIA 49
Query: 89 -KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
K N+L+IE+E +T G+L Y + DF ++ + N
Sbjct: 50 FDDTKVKNRLTIELEVRTEAESGLLFYMARI--NHADFATVQLRN 92
Score = 40.4 bits (94), Expect = 6e-05
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 83 SSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+ K L +E EF+T + G+LL D + + +++
Sbjct: 220 GFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS---SQKMDGMGIEMID 266
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 57.5 bits (138), Expect = 6e-11
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 34 CLSHPC----QNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
C Q+ TC+D C P ++ LY F+G+ I ++
Sbjct: 6 CDGRGGLKLSQDMDTCEDI------LPCVP-----FSVAKSVKSLYLGRMFSGTPVIRLR 54
Query: 90 TLKA-YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+ +L E +F+T +GILL+ + ++ LA+
Sbjct: 55 FKRLQPTRLVAEFDFRTFDPEGILLFAGGH--QDSTWIVLALRA 96
Score = 26.3 bits (57), Expect = 3.9
Identities = 9/99 (9%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKA 93
C+ ++ + F+ + P + + + + ++
Sbjct: 188 CMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTES 247
Query: 94 YNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
++ + + + G+L D +S+A+V+
Sbjct: 248 TWEVEVVAHIRPAADTGVLFAL-WAPDLRAVPLSVALVD 285
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 56.4 bits (136), Expect = 6e-11
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 58 SPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQ 117
+ F G T + + + + KA E+ KT G++L++ +
Sbjct: 14 AIAFDGRTY---MEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGK 70
Query: 118 NLDGTGDFVSLAIVN 132
L D+++LAIV+
Sbjct: 71 GL-ERSDYIALAIVD 84
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 55.2 bits (133), Expect = 1e-10
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 75 YDTPAFNGSSHI-------------VMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDG 121
+T AF+G ++I + KA E+ +T G++L+ + +
Sbjct: 2 LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER 61
Query: 122 TGDFVSLAIVN 132
D+++LAIV+
Sbjct: 62 -ADYMALAIVD 71
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 53.0 bits (128), Expect = 4e-10
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C+S+PCQN ATC D+ F+C+C P + G C
Sbjct: 48 CVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEV 81
Score = 51.4 bits (124), Expect = 1e-09
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C S PC + C D+ + F+C C FTG+LC
Sbjct: 86 CASSPCLHNGRCLDKINE-FQCECPTGFTGHLCQV 119
Score = 48.4 bits (116), Expect = 2e-08
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
++PC++ C + FEC C +TG C
Sbjct: 10 LGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEI 43
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 54.6 bits (131), Expect = 5e-10
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 56 LCSPEFTGYLCHTRAPPKLYDTPA---FNGSSHIVMKTLKA--YNKLSIEIEFKTNKNDG 110
L PE LC P + +SH+V+ ++ +L +++ +T + G
Sbjct: 3 LAQPE----LCAVDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSG 58
Query: 111 ILLYNQQNLDGTGDFVSLAIVN 132
++ Y D+ +L +
Sbjct: 59 LIYYVAHQ--NQMDYATLQLQE 78
Score = 44.6 bits (105), Expect = 2e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 50 DGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKND 109
+G P + + +G + +V + K L I +EF+T +
Sbjct: 175 NGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKN 234
Query: 110 GILLYNQQNLDGTGDFVSLAIVN 132
G+LL D + L IV+
Sbjct: 235 GVLLGIS---SAKVDAIGLEIVD 254
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 50.2 bits (121), Expect = 6e-10
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C S+PC NG +C+D+ + +EC C F G C
Sbjct: 6 CESNPCLNGGSCKDDINS-YECWCPFGFEGKNC 37
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 52.4 bits (126), Expect = 8e-10
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
C PC+NG C D + C C EF G C +
Sbjct: 100 CEVEPCKNGGICTDLVAN-YSCECPGEFMGRNCQYK 134
Score = 50.9 bits (122), Expect = 3e-09
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 33 PCLSHPCQNGATCQDE-EDGLFECLCSPEFTGYLCHT 68
C +PC+NG C DG F C C FT C +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS 38
Score = 47.0 bits (112), Expect = 9e-08
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 23 ASPNLRLEESPCLSHPCQNGATCQDEEDGL------FECLCSPEFTGYLCHT 68
+ PC +PC NG TC+ E + C C F G C
Sbjct: 44 SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH 95
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 52.9 bits (127), Expect = 9e-10
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 76 DTPAFNGSSHIVMK--TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+++GS + ++ + + + F++ + GIL+ + D + L +
Sbjct: 6 TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDA 62
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 52.9 bits (127), Expect = 9e-10
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 78 PAFNGSSHIVMKTLK---AYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
F GS + + + I + FKT + +G++L+ ++ D+V+LA+ N
Sbjct: 8 ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKN 61
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 51.8 bits (124), Expect = 2e-09
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 71 PPKLY--DTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSL 128
PP ++ + P + + K K S E +T +G++ Y N D+ L
Sbjct: 1 PPAVHLSNGPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTN--PKDDWFML 57
Query: 129 AIVN 132
+ +
Sbjct: 58 GLRD 61
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 49.6 bits (119), Expect = 7e-09
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C S PCQNG +C+D+ + C C P F G C T
Sbjct: 49 QCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNCET 83
Score = 42.3 bits (100), Expect = 4e-06
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 34 CLSHPCQNG---ATCQDEEDGLFECLCSPEFTGYLCHT 68
L +NG C D C C ++
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Score = 25.0 bits (55), Expect = 7.2
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 33 PCLSHPCQNGATCQ 46
P + +PC +
Sbjct: 129 PTVEYPCGKIPILE 142
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 50.3 bits (120), Expect = 1e-08
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 68 TRAPPKLYDTPAFNGSSHIVMK-TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFV 126
PP ++ + VM L K S E +T +G++ Y N D+
Sbjct: 10 AHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTN--PKDDWF 67
Query: 127 SLAIVN 132
L + +
Sbjct: 68 MLGLRD 73
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 49.3 bits (118), Expect = 1e-08
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C +PC NG C+D+ + +EC C F G C
Sbjct: 50 QCEPNPCLNGGLCKDDINS-YECWCQVGFEGKNCEL 84
Score = 38.9 bits (91), Expect = 1e-04
Identities = 2/35 (5%), Positives = 7/35 (20%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
+ + + C C+ +
Sbjct: 89 NIKNGRCKQFCKTGADSK-VLCSCTTGYRLAPDQK 122
Score = 30.4 bits (69), Expect = 0.092
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 33 PCLSHPCQNGATCQD 47
P + PC +
Sbjct: 126 PAVPFPCGRVSVSHS 140
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 48.8 bits (117), Expect = 2e-08
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C + PCQN C+D + C C F G C
Sbjct: 44 QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 78
Score = 45.4 bits (108), Expect = 3e-07
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C C +E++ C C+ +T
Sbjct: 84 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGK 117
Score = 37.3 bits (87), Expect = 2e-04
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
L C +E +FE + +
Sbjct: 7 HLERECMEETCSYEEAREVFED-SDKTNEFWNKYK 40
Score = 30.7 bits (70), Expect = 0.066
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 33 PCLSHPCQNGATCQ 46
P +PC +
Sbjct: 121 PTGPYPCGKQTLER 134
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 49.5 bits (118), Expect = 2e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 80 FNGSSHIVMKTLKAYNKL-----SIEIEFKTNKNDGILLYNQQNLDGTG---DFVSLAIV 131
F+ + L +IE+E +T+ G+LL+ + G DF+SL +
Sbjct: 10 FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69
Query: 132 N 132
+
Sbjct: 70 D 70
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 45.9 bits (109), Expect = 9e-08
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 32 SPCLSHPCQNGATCQD-EEDGLFECLCSPEFTGYLC 66
C C NG TCQ F C C F G C
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 47.2 bits (112), Expect = 1e-07
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 80 FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
G I K + + I F T + + +L+ + G GD++ L I
Sbjct: 10 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 65
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 47.4 bits (113), Expect = 1e-07
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C + PCQN C+D + C C F G C
Sbjct: 44 QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 78
Score = 44.0 bits (104), Expect = 2e-06
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C C +E++ C C+ +T
Sbjct: 84 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGK 117
Score = 38.2 bits (89), Expect = 2e-04
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
P +PC + + + S
Sbjct: 121 PTGPYPCGKQTLERRKRSV-AQATSSSGEAPDSI 153
Score = 31.3 bits (71), Expect = 0.062
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
L C +E +FE + +
Sbjct: 7 HLERECMEETCSYEEAREVFED-SDKTNEFWNKYK 40
Score = 29.7 bits (67), Expect = 0.23
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 33 PCLSHPCQNGATCQD 47
P +N D
Sbjct: 160 AADLDPTENPFDLLD 174
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 47.0 bits (112), Expect = 2e-07
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
PC+S PC + +CQD G + C CSP + G C
Sbjct: 7 PCISQPCLHNGSCQDSIWG-YTCTCSPGYEGSNC 39
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 45.8 bits (109), Expect = 4e-07
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 33 PCLSH-PCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C +H PC NG TC + ++C C ++G C
Sbjct: 133 YCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 43.5 bits (103), Expect = 2e-06
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
C+ HP C + ++CLC + G LC P NG
Sbjct: 97 DKCIPHPGCVHGICNEP----WQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143
Score = 38.9 bits (91), Expect = 1e-04
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP 71
+ C +C+ +C C + G C P
Sbjct: 64 NRAICRQGCSPKHGSCKLP----GDCRCQYGWQGLYCDKCIP 101
Score = 37.0 bits (86), Expect = 5e-04
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
SH + + + C + G+ C+ P
Sbjct: 2 RGSHHHHHHGSIEGR----SAVTCDDYYYGFGCNKFCRP 36
Score = 35.4 bits (82), Expect = 0.002
Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 3/38 (7%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C G D+ C + G C+
Sbjct: 31 NKFCRPRDDFFGHYACDQN---GNKTCMEGWMGPECNR 65
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 43.9 bits (103), Expect = 3e-06
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 47 DEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK----TLKAYNKLSIEIE 102
+ ++ G I K + + I
Sbjct: 15 SSKHHSVPIAIYRSPASLRGGHAGTTYIF----SKGGGQITYKWPPNDRPSTRADRLAIG 70
Query: 103 FKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
F T + + +L+ + G GD++ L I
Sbjct: 71 FSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 99
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 43.6 bits (102), Expect = 3e-06
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 80 FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
G I K + + I F T + + +L+ + G GD++ L I
Sbjct: 16 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 71
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 41.6 bits (98), Expect = 5e-06
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
+ C TC D F C C + G C
Sbjct: 17 PCASLCCGHGTCIDGIGS-FSCDCRSGWEGRFCQR 50
Score = 35.5 bits (82), Expect = 0.001
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C C +E C C+P +
Sbjct: 57 CSLDNGGCTHYCLEEVGW-RRCSCAPGYKLGDDLL 90
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 41.5 bits (97), Expect = 2e-05
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECL-CSPEFTG 63
CLS+PC GA C DG + C C F G
Sbjct: 5 GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLG 36
Score = 26.9 bits (59), Expect = 2.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 36 SHPCQNGATCQDEE---DGLFECLCSPEFTG 63
+H C A C D +++C C + G
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 39.5 bits (92), Expect = 1e-04
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
+ S C NG TC +C+C P G C
Sbjct: 211 DKANCSTTCFNGGTCFYP----GKCICPPGLEGEQCEI 244
Score = 39.1 bits (91), Expect = 2e-04
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTR 69
E PC+NG C + +C CS + G LC
Sbjct: 243 EISKCPQPCRNGGKCIGK----SKCKCSKGYQGDLCSKP 277
Score = 37.1 bits (86), Expect = 6e-04
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
P C TC + +C C + G C+ R L T +
Sbjct: 275 SKPVCEPGCGAHGTCHEP----NKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
Score = 36.4 bits (84), Expect = 0.001
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
E + C NG C C+C P F G C
Sbjct: 179 EKALCTPRCMNGGLCVTP----GFCICPPGFYGVNC 210
Score = 36.4 bits (84), Expect = 0.001
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
+ C+NG C + C C F G C
Sbjct: 147 QQAECPGGCRNGGFCNER----RICECPDGFHGPHCEKALCT 184
Score = 26.0 bits (57), Expect = 4.4
Identities = 2/35 (5%), Positives = 6/35 (17%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
++ + E + C
Sbjct: 115 GVAAFEVDVIVMNSEGNT-ILKTPQNAIFFKTCQQ 148
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 38.9 bits (90), Expect = 2e-04
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
L C N C ++ EC+C P F G C
Sbjct: 200 HLCTACMNNGVCHEDT---GECICPPGFMGRTCEKACEL 235
Score = 37.0 bits (85), Expect = 9e-04
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLY 75
L C NG C D CLCSP + G C P++
Sbjct: 290 KLRCSCNNGEMC----DRFQGCLCSPGWQGLQCEREGIPRMT 327
Score = 34.3 bits (78), Expect = 0.008
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 33 PCLSHPCQNGATCQDEEDGL---FECLCSPEFTGYLCHTRAPPKLY 75
C C+ L + C C+ + G C+ P Y
Sbjct: 240 RTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFY 285
Score = 28.1 bits (62), Expect = 0.96
Identities = 5/43 (11%), Positives = 9/43 (20%), Gaps = 1/43 (2%)
Query: 31 ESPCLSHPCQNGATC-QDEEDGLFECLCSPEFTGYLCHTRAPP 72
+ + G L C + G C+
Sbjct: 162 QDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTA 204
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 38.1 bits (88), Expect = 3e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
PC +PCQ+ C ++C C+ TGY P+++
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTR--TGYSGPNCTIPEIWT 45
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 37.4 bits (86), Expect = 5e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
PC S+PCQN C ++C C+ TG+ P+
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTR--TGFYGENCTTPEFLT 44
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 32.9 bits (75), Expect = 0.003
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 32 SPCLSHPCQNGATCQ-DEEDGLFECLCSPEFTGYLC 66
C NG C E + C C ++G C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 33.2 bits (75), Expect = 0.003
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 32 SPCLSHPCQNGATC----QDEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
+ C NG C + C C P FTG C P K+ +
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 55
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.4 bits (74), Expect = 0.017
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
+ C + C C E + C C P F+G C
Sbjct: 118 YTAACTNTSCSGHGECV-ETINNYTCKCDPGFSGLKC 153
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 33.3 bits (75), Expect = 0.018
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 26 NLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
++ CQNG TC CLC +TG LC
Sbjct: 360 SIGTNVCDNELLHCQNGGTCH----NNVRCLCPAAYTGILCE 397
Score = 31.7 bits (71), Expect = 0.048
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP 71
+ C AT ++ C C TG C
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKK 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.022
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 28/86 (32%)
Query: 41 NGATCQDEEDGLFECLCSPEFTGYLCHTRAP---PKLYDTPAFNGSSHIVMKTLKAYNKL 97
+G+ + + E + C R P A +HI
Sbjct: 464 DGSDLRVLSGSISERIVD-------CIIRLPVKWETTTQFKA----THI----------- 501
Query: 98 SIEIEFKTNKNDGILLYNQQNLDGTG 123
++F G+ + +N DGTG
Sbjct: 502 ---LDFGPGGASGLGVLTHRNKDGTG 524
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 31.0 bits (70), Expect = 0.025
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPE 60
C + C G C+ + C+C+P+
Sbjct: 3 TCENVDCGPGKKCRMNKKNKPRCVCAPD 30
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.7 bits (72), Expect = 0.055
Identities = 5/38 (13%), Positives = 8/38 (21%), Gaps = 1/38 (2%)
Query: 29 LEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
L + +G + Q C F
Sbjct: 264 LPSTRIKKSKALSGFSLQSCRHS-IPVFCHSSFYHDTD 300
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo
sapiens} PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 31.1 bits (69), Expect = 0.082
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 6 RMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPE 60
+ + +PN + C + C G C+ + C+C+P+
Sbjct: 38 EEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPD 92
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 28.7 bits (64), Expect = 0.10
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 32 SPCLSHPCQNGATCQ-DEEDGLFECLCSPEFTGYLC 66
C + C E + C C + G C
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 30.2 bits (67), Expect = 0.12
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C + C G C+ + C+C+P+ +
Sbjct: 5 TCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKG 40
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.1 bits (67), Expect = 0.16
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 32 SPCLSHPCQNG-------ATCQDEEDGLFECLCSPEFT--GYLCHTRAPP 72
+P C N A C+D G F C C +T G C P
Sbjct: 1 APLAQQTCANNRHQCSVHAECRDYATG-FCCRCVANYTGNGRQCVAEGSP 49
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 29.0 bits (64), Expect = 0.22
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 29 LEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
+ + C+ C + C D EC C +
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQ 36
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.5 bits (65), Expect = 0.28
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLC 57
PC +H C++G C+ +E+ C+C
Sbjct: 5 PCQNHHCKHGKVCELDENNTPMCVC 29
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.9 bits (65), Expect = 0.30
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C S PC NG C++ G F C CS E T T
Sbjct: 7 CESSPCING-VCKNS-PGSFICECSSESTLDPTKT 39
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.1 bits (64), Expect = 0.32
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C+NG C + C C F G C
Sbjct: 149 AECPGGCRNGGFC----NERRICECPDGFHGPHCEG 180
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 27.6 bits (61), Expect = 0.33
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 38 PCQNGATCQDEEDG---LFECLCSPEFTGYLCHTRAPPKLY 75
C N A C + ++ C C+ F G C + Y
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTY 55
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 27.2 bits (60), Expect = 0.37
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 39 CQNGATC---QDEEDGLFECLCSPEFTGYLCHTR 69
C N A C + + ++ C C+ F G C +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.2 bits (64), Expect = 0.42
Identities = 9/66 (13%), Positives = 20/66 (30%)
Query: 18 VQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDT 77
+ + P ++ + C+ +C+C P ++G C +
Sbjct: 167 FYPAGSQPVTWAIDNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLK 226
Query: 78 PAFNGS 83
F G
Sbjct: 227 DDFEGQ 232
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 28.2 bits (63), Expect = 0.51
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
+ C C C + + C C P F G C
Sbjct: 118 YTASCQDMSCSKQGECLETIGN-YTCSCYPGFYGPEC 153
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 28.9 bits (64), Expect = 0.55
Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 6/53 (11%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNG 82
+E P PC +C + G C P G
Sbjct: 591 QECPGCPSPCGKYISCAE------CLKFEKGPFGKNCSAACPGLQLSNNPVKG 637
Score = 28.9 bits (64), Expect = 0.55
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
LS+ G TC++ + C +T
Sbjct: 629 QLSNNPVKGRTCKERD----SEGCWVAYTLEQQ 657
Score = 25.8 bits (56), Expect = 4.8
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFE---CLCSPEFTGYLCHTR 69
E ++ NG C GL C C P F G C
Sbjct: 513 ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCE 554
Score = 25.4 bits (55), Expect = 6.9
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 5/29 (17%)
Query: 38 PCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C C+ C C + LC
Sbjct: 567 ECSGRGRCRC-----NVCECHSGYQLPLC 590
Score = 25.1 bits (54), Expect = 9.7
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 5/42 (11%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP 71
+ C + C C + G C +
Sbjct: 428 RDQSRDRSLCHGKGFLECGI-----CRCDTGYIGKNCECQTQ 464
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 27.6 bits (60), Expect = 0.84
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 34 CLSHPCQNGATCQ--DEEDGLFECLCSPEFTGYLCHTRAPPKLYD 76
+ C NG TC + C C +F G C Y+
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYE 54
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 1.0
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
C+ A C DG E C F
Sbjct: 13 CIDTNVPENAACYRYLDGTEEWRCLLGFKE 42
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains,
anticoagulant complex, antifibrinolytic complex,
hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A
{Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB:
3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Length = 118
Score = 26.6 bits (59), Expect = 1.5
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
PC C+ CQ + + C+C+ F
Sbjct: 6 PCFRANCEYQ--CQPLDQTSYLCVCAEGFAP 34
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 26.5 bits (58), Expect = 1.5
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
C+ A C DG E C F
Sbjct: 7 CIDTNVPENAACYRYLDGTEEWRCLLYFKE 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 27.0 bits (59), Expect = 2.3
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPP 72
C C G +CLC ++TGY C+
Sbjct: 531 YKGEMCSGHGQC---SCG--DCLCDSDWTGYYCNCTTRT 564
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 26.8 bits (59), Expect = 2.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 37 HPCQNGATCQDEEDGLFECLCSPEFTG 63
C A C E DG C+C+ + G
Sbjct: 27 SECHEHADCVLERDGSRSCVCAVGWAG 53
>3sek_C Follistatin-related protein 3; protein-protein complex, TB
domain, cystine knot motif, TGF- fold, disulfide linked
dimer, follistatin domain (FSD); HET: NAG; 2.40A {Homo
sapiens} PDB: 2kcx_A
Length = 209
Score = 26.4 bits (57), Expect = 2.9
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPE 60
+ C C G C+ G C C+P+
Sbjct: 61 KDSCDGVECGPGKACR-MLGGRPRCECAPD 89
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 26.5 bits (58), Expect = 3.1
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 EESPCLSHPCQNGATCQDEEDGLF---ECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHI 86
C++ C +GA + EEDG+ + C +C T P Y FN S
Sbjct: 188 LNPACVAT-CPSGAIYKREEDGIVLIDQDKC---RGWRMCITGCP---YKKIYFNWKSGK 240
Query: 87 VMK 89
K
Sbjct: 241 SEK 243
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 26.4 bits (57), Expect = 3.3
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 6 RMKRMGCLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPE 60
+ G + + + C C G C+ G C C+P+
Sbjct: 47 NLTHPGNKINLLGFLG--LVHCLPCKDSCDGVECGPGKACR-MLGGRPRCECAPD 98
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 26.4 bits (58), Expect = 3.4
Identities = 4/67 (5%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 12 CLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAP 71
+ ++ + + + + C+N ++ + +F +
Sbjct: 42 AQAKALSKHQDFNS-----AVQLVENFCRNPDGDEEGV-WCYVAGKPGDFGYCDLNYCEE 95
Query: 72 PKLYDTP 78
+T
Sbjct: 96 AVEEETG 102
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 25.8 bits (57), Expect = 3.7
Identities = 5/30 (16%), Positives = 6/30 (20%), Gaps = 1/30 (3%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
PC+ E C F
Sbjct: 84 AWGTPCEMCPAVNTSE-YKILCPGGEGFRP 112
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 25.9 bits (57), Expect = 3.7
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 36 SHPCQNGATCQDEEDGLFECLCSPEFTG 63
H C + C + G + C C P +
Sbjct: 103 QHQCDSSTVCFNT-VGSYSCRCRPGWKP 129
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 25.8 bits (55), Expect = 4.4
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 12 CLSASVVQSSQASPNLRLEESPCLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
C V E+ C + C + +G++ C C FT
Sbjct: 120 CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXN-VEGVYXCQCMEGFTF 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,891,752
Number of extensions: 98343
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 148
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)