RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11297
(132 letters)
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 54.1 bits (129), Expect = 1e-10
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 37 HPCQNGATCQDEEDGLFECLCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK-TLKAYN 95
Q+ TC+D C P ++ LY F+G+ I ++
Sbjct: 9 KLSQDMDTCEDI------LPCVPFSVA-----KSVKSLYLGRMFSGTPVIRLRFKRLQPT 57
Query: 96 KLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+L E +F+T +GILL+ + ++ LA+
Sbjct: 58 RLVAEFDFRTFDPEGILLFAGGH--QDSTWIVLALRA 92
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 49.7 bits (119), Expect = 3e-10
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C+S+PCQN ATC D+ F+C+C P + G C
Sbjct: 3 ECVSNPCQNDATCLDQIGE-FQCICMPGYEGVHCEV 37
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 48.9 bits (117), Expect = 7e-10
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C S+PC NG +C+D+ + +EC C F G C
Sbjct: 5 QCESNPCLNGGSCKDDINS-YECWCPFGFEGKNC 37
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 48.9 bits (117), Expect = 8e-10
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
C + PCQN C+D + C C F G C
Sbjct: 2 QCETSPCQNQGKCKDGLGE-YTCTCLEGFEGKNCEL 36
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 48.1 bits (115), Expect = 1e-09
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C S PC + C D+ + F+C C FTG+LC
Sbjct: 2 ECASSPCLHNGRCLDKINE-FQCECPTGFTGHLC 34
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 51.0 bits (121), Expect = 2e-09
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 66 CHTRAPPKLYDTPA---FNGSSHIVM--KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLD 120
C + P L + +SHI + K N+L+IE+E +T G+L Y +
Sbjct: 4 CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARI-- 61
Query: 121 GTGDFVSLAIVN 132
DF ++ + N
Sbjct: 62 NHADFATVQLRN 73
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 47.8 bits (114), Expect = 2e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
C S PCQNG +C+D+ + C C P F G C
Sbjct: 4 QCASSPCQNGGSCKDQLQS-YICFCLPAFEGRNC 36
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 47.5 bits (113), Expect = 2e-09
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
+ C + C C + + + C C P F+G C
Sbjct: 2 AACTNTSCSGHGECVETINN-YTCKCDPGFSGLKC 35
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 47.1 bits (112), Expect = 4e-09
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCS-PEFTGYLCHT 68
PC S+PCQN C ++C C+ F G C T
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 45.9 bits (109), Expect = 1e-08
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
+ C C C + + C C P F G C
Sbjct: 2 ASCQDMSCSKQGECLETIGN-YTCSCYPGFYGPEC 35
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 45.6 bits (108), Expect = 1e-08
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 33 PCLSHPCQNGATCQDEEDGLFECLCSPE-FTGYLCHT 68
PC +PCQ+ C ++C C+ ++G C
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 45.6 bits (108), Expect = 1e-08
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 32 SPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTR 69
C NG C E + C C ++G C TR
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 47.6 bits (112), Expect = 4e-08
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 76 DTPAFNGSSHIVMK----------------TLKAYNKLSIEIEFKTNKNDGILLYNQQNL 119
+ AF+G +++ + KA E+ KT G++L++ +
Sbjct: 7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKG- 65
Query: 120 DGTGDFVSLAIVN 132
D+++LAIV+
Sbjct: 66 LERSDYIALAIVD 78
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 44.5 bits (105), Expect = 4e-08
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 32 SPCLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHTR 69
C + C E + C C + G C R
Sbjct: 5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 43.6 bits (103), Expect = 9e-08
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
++PC++ C + FEC C +TG C
Sbjct: 8 LGANPCEHAGKCINTLGS-FECQCLQGYTGPRCEI 41
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 45.6 bits (107), Expect = 2e-07
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 80 FNGSSHIVM-KTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
F+G+ K L +E EF+T + G+LL D + + +++
Sbjct: 8 FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS---SQKMDGMGIEMID 58
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 42.2 bits (99), Expect = 3e-07
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 34 CLSHPCQNGATCQDEEDGL-FECLCSPEFTGYLCHT 68
C C NG TCQ F C C F G C
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 42.3 bits (99), Expect = 3e-07
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 33 PCLSHPCQNGATCQDEED----GLFECLCSPEFTGYLCHTRAPPKLYD 76
C NG C +D + C C P FTG C P K+ +
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 55
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 41.7 bits (98), Expect = 5e-07
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 31 ESPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCHT 68
E PC S C +G TC D F C C + G C
Sbjct: 8 EHPCASLCCGHG-TCIDGIGS-FSCDCRSGWEGRFCQR 43
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 42.1 bits (98), Expect = 3e-06
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 71 PPKLY--DTPAFNGSSHIVMKTLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSL 128
PP ++ + P + + K K S E +T +G++ Y N D+ L
Sbjct: 1 PPAVHLSNGPGQEPIAVMTFDLTK-ITKTSSSFEVRTWDPEGVIFYGDTN--PKDDWFML 57
Query: 129 AIVN 132
+ +
Sbjct: 58 GLRD 61
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 40.6 bits (94), Expect = 1e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 80 FNGSSHIVMK----TLKAYNKLSIEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
G I K + + I F T + + +L+ + G GD++ L I
Sbjct: 9 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-SGLGDYLELHIHQ 64
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 34.8 bits (80), Expect = 2e-04
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLC 66
H C G + C+C + G C
Sbjct: 9 PKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 32.1 bits (73), Expect = 0.002
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
S ++ C +G + C C +TG C
Sbjct: 7 SSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 31.7 bits (72), Expect = 0.003
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECLCSPEFTGYLCH 67
+ C +G ++ C+C + G C
Sbjct: 8 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 43
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 30.3 bits (67), Expect = 0.044
Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 17/77 (22%)
Query: 66 CHTRAPPKLYDTPAFNGSSHIVMKTLKAYNK----------LSIEIEFKTNKNDGILLYN 115
C + + + GS + + + + G+L
Sbjct: 10 CFSVTERGSF----YPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFAL 65
Query: 116 QQNLDGTGDFVSLAIVN 132
V L++
Sbjct: 66 W---APDLRAVPLSVAL 79
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.7 bits (59), Expect = 0.16
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 36 SHPCQNGATCQDEEDGLFECLCSPEFTG 63
H C A C+D F C C +TG
Sbjct: 6 RHQCSVHAECRDY-ATGFCCRCVANYTG 32
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.9 bits (57), Expect = 0.42
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 34 CLSHPCQNGATCQDEEDGLFECLCSPEFTG 63
C C + DG + C C +
Sbjct: 8 CKEPDVCKHGQCINT-DGSYRCECPFGYIL 36
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.4 bits (55), Expect = 0.44
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 32 SPCLSHPCQNGATCQDEEDGLFECL 56
+PC +H C++G C+ +E+ C+
Sbjct: 1 APCQNHHCKHGKVCELDENNTPMCV 25
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 24.0 bits (52), Expect = 1.8
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 37 HPCQNGATCQDEEDGLFECLCSPEFTG 63
C G C + G FEC C +
Sbjct: 11 DLCGRG-QCVNT-PGDFECKCDEGYES 35
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 141
Score = 25.4 bits (56), Expect = 1.8
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 47 DEEDGLFEC-LCSPEFTGYLCHTRAPPKLYDTPAFNGSSHIVMK 89
++ L +P+F +L R P+ T N + +K
Sbjct: 70 EQLAFLERIPFLAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLK 113
>d1nl1a2 g.32.1.1 (A:1-65) Prothrombin {Cow (Bos taurus) [TaxId:
9913]}
Length = 65
Score = 24.4 bits (53), Expect = 1.9
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 34 CLSHPCQNGATCQD 47
+P + C +
Sbjct: 50 SARNPREKLNECLE 63
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 25.1 bits (54), Expect = 3.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 34 CLSHPCQN----GATCQDEEDGL 52
CL+ C GA + EEDG+
Sbjct: 187 CLNPACVATCPSGAIYKREEDGI 209
>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain
{Bacteriophage Psa [TaxId: 171618]}
Length = 180
Score = 24.6 bits (53), Expect = 3.8
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 99 IEIEFKTNKNDGILLYNQQNLDGTGDFVSLAIVN 132
+E+ F K D ++ D G ++ +
Sbjct: 140 LEVCFVDRKEDANAIHKSGMYDKLGIAIAEGLTG 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,857
Number of extensions: 20385
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 40
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)