Query psy1130
Match_columns 135
No_of_seqs 161 out of 791
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:23:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 99.6 1.7E-15 3.7E-20 123.5 7.3 103 3-105 85-266 (274)
2 PF01151 ELO: GNS1/SUR4 family 99.4 3.1E-12 6.8E-17 102.4 8.6 58 48-105 184-250 (250)
3 PTZ00251 fatty acid elongase; 99.2 3.8E-11 8.2E-16 97.9 8.3 58 48-105 204-270 (272)
4 KOG3072|consensus 98.1 2E-06 4.4E-11 70.6 3.1 54 48-101 210-269 (282)
5 KOG3071|consensus 90.2 0.33 7E-06 40.1 3.4 42 25-66 207-251 (274)
6 PF01151 ELO: GNS1/SUR4 family 84.3 1.1 2.4E-05 35.8 3.2 41 25-65 185-234 (250)
7 PTZ00251 fatty acid elongase; 70.4 5.5 0.00012 32.7 3.5 40 26-65 206-254 (272)
8 PTZ00046 rifin; Provisional 48.6 15 0.00033 31.5 2.5 25 74-105 324-348 (358)
9 TIGR01477 RIFIN variant surfac 46.0 17 0.00038 31.1 2.4 25 74-105 319-343 (353)
10 PF04901 RAMP: Receptor activi 40.9 25 0.00054 25.3 2.3 27 42-70 46-72 (113)
11 PF02009 Rifin_STEVOR: Rifin/s 39.3 20 0.00043 30.0 1.8 21 78-105 269-289 (299)
12 PF07172 GRP: Glycine rich pro 22.7 2.3E+02 0.005 19.6 4.6 7 108-114 37-43 (95)
No 1
>KOG3071|consensus
Probab=99.60 E-value=1.7e-15 Score=123.47 Aligned_cols=103 Identities=28% Similarity=0.581 Sum_probs=83.4
Q ss_pred CCCCCCcceeeeccCCCCCcchhHHHH------------------------------HHHHhhhhhhhc-------ccCC
Q psy1130 3 GWLTGDYSFKCQPLDLGNHPRTMRIQF------------------------------VLIMVHAFQLLF-------IDCN 45 (135)
Q Consensus 3 ~~~~~~y~~~c~~~~~~~~~~~~~IQF------------------------------viv~~H~~~~lf-------~~Cg 45 (135)
.|..++|++.||++++.++|.++|+-+ .|++||+.+++. .++|
T Consensus 85 ~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g 164 (274)
T KOG3071|consen 85 RWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGG 164 (274)
T ss_pred hhhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCc
Confidence 566656999999999999998888766 378888777764 1222
Q ss_pred c---------------------------------------hHHHHHHHHHHHHHHhh-hcc-CCCCchH-HHHHHHHHHH
Q psy1130 46 F---------------------------------------PKAFIQFVLIMVHAFQL-LFI-DCNFPKA-FVWWIGSHAV 83 (135)
Q Consensus 46 ~---------------------------------------p~QliQFvi~~~~~~~~-LF~-nC~~p~~-~~~~~~~~~~ 83 (135)
. ..|++||++...|.... ++. ||++|++ +.+....+++
T Consensus 165 ~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 244 (274)
T KOG3071|consen 165 HGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINV 244 (274)
T ss_pred eeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHH
Confidence 2 36999999999999998 775 8999999 6667688999
Q ss_pred HHHHHHHhHHHHhhcCCccccc
Q psy1130 84 MFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 84 ~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
+|+.||.|||+|+|+|+++++.
T Consensus 245 ~~l~LF~nFY~~tY~k~~~~~~ 266 (274)
T KOG3071|consen 245 SFLLLFSNFYIKTYKKPKKKKA 266 (274)
T ss_pred HHHHHHHHHHHHHhccccccch
Confidence 9999999999999998766554
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.35 E-value=3.1e-12 Score=102.42 Aligned_cols=58 Identities=34% Similarity=0.577 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhhcc------CC---CCchHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccc
Q psy1130 48 KAFIQFVLIMVHAFQLLFI------DC---NFPKAFVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 48 ~QliQFvi~~~~~~~~LF~------nC---~~p~~~~~~~~~~~~~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
.||+||++...+....++. +| ++|+....+...+.+++++||.|||+|+|++++++|+
T Consensus 184 ~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 184 LQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred HhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 7999999999988888775 89 7889999999999999999999999999998877763
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=99.23 E-value=3.8e-11 Score=97.93 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhhc--------cCCCCch-HHHHHHHHHHHHHHHHHHhHHHHhhcCCccccc
Q psy1130 48 KAFIQFVLIMVHAFQLLF--------IDCNFPK-AFVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 48 ~QliQFvi~~~~~~~~LF--------~nC~~p~-~~~~~~~~~~~~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
.|++||++...+....+. .+|++|. ........+++++++||.|||+|+|+++||+++
T Consensus 204 lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 204 LQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAKA 270 (272)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 699999999888877664 2699887 566666789999999999999999998776664
No 4
>KOG3072|consensus
Probab=98.11 E-value=2e-06 Score=70.55 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhh---hc-cC--CCCchHHHHHHHHHHHHHHHHHHhHHHHhhcCCc
Q psy1130 48 KAFIQFVLIMVHAFQL---LF-ID--CNFPKAFVWWIGSHAVMFFFLFRNFYKEQYVKPV 101 (135)
Q Consensus 48 ~QliQFvi~~~~~~~~---LF-~n--C~~p~~~~~~~~~~~~~~l~LF~~FY~ksY~~~~ 101 (135)
.|++||++.......+ .- .+ |........++.++.+++++||+|||+++|++++
T Consensus 210 lQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 210 LQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKKG 269 (282)
T ss_pred HHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7999998876533322 21 23 9988888889999999999999999999999974
No 5
>KOG3071|consensus
Probab=90.20 E-value=0.33 Score=40.09 Aligned_cols=42 Identities=31% Similarity=0.577 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhhhhh-hcc-cCCchHHHHHHH-HHHHHHHhhhcc
Q psy1130 25 MRIQFVLIMVHAFQL-LFI-DCNFPKAFIQFV-LIMVHAFQLLFI 66 (135)
Q Consensus 25 ~~IQFviv~~H~~~~-lf~-~Cg~p~QliQFv-i~~~~~~~~LF~ 66 (135)
-.+||++++.|+.+. ++. +|.+|+....+. .....++..||.
T Consensus 207 Qlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~ 251 (274)
T KOG3071|consen 207 QLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFS 251 (274)
T ss_pred HHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999 776 899999844444 445555555553
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=84.29 E-value=1.1 Score=35.77 Aligned_cols=41 Identities=32% Similarity=0.583 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhhhhhhcc------cC---CchHHHHHHHHHHHHHHhhhc
Q psy1130 25 MRIQFVLIMVHAFQLLFI------DC---NFPKAFIQFVLIMVHAFQLLF 65 (135)
Q Consensus 25 ~~IQFviv~~H~~~~lf~------~C---g~p~QliQFvi~~~~~~~~LF 65 (135)
-++||++.++|....++. +| ++|....-+...+..++..||
T Consensus 185 Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF 234 (250)
T PF01151_consen 185 QIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLF 234 (250)
T ss_pred hhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 367999999998888876 89 777766666666666666665
No 7
>PTZ00251 fatty acid elongase; Provisional
Probab=70.44 E-value=5.5 Score=32.66 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhhhcc--------cCCchH-HHHHHHHHHHHHHhhhc
Q psy1130 26 RIQFVLIMVHAFQLLFI--------DCNFPK-AFIQFVLIMVHAFQLLF 65 (135)
Q Consensus 26 ~IQFviv~~H~~~~lf~--------~Cg~p~-QliQFvi~~~~~~~~LF 65 (135)
++||++.+.|+...++. +|+.|. ........+..++..||
T Consensus 206 i~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~l~LF 254 (272)
T PTZ00251 206 ITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLF 254 (272)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 57899988887777642 577665 44333333334444444
No 8
>PTZ00046 rifin; Provisional
Probab=48.64 E-value=15 Score=31.55 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCccccc
Q psy1130 74 FVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 74 ~~~~~~~~~~~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
++.+.++|.++||+| .|+++||.|+
T Consensus 324 IvVIVLIMvIIYLIL-------RYRRKKKMkK 348 (358)
T PTZ00046 324 IVVIVLIMVIIYLIL-------RYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHH-------HhhhcchhHH
Confidence 344556778888888 8888776654
No 9
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=45.96 E-value=17 Score=31.11 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcCCccccc
Q psy1130 74 FVWWIGSHAVMFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 74 ~~~~~~~~~~~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
++.+.+++.++||+| .|++|||.|+
T Consensus 319 IvvIVLIMvIIYLIL-------RYRRKKKMkK 343 (353)
T TIGR01477 319 ILIIVLIMVIIYLIL-------RYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHH-------HhhhcchhHH
Confidence 334556678888877 7888776554
No 10
>PF04901 RAMP: Receptor activity modifying family ; InterPro: IPR006985 The calcitonin-receptor-like receptor can function as either a calcitonin-gene-related peptide or an adrenomedullin receptor. The receptors function is modified by receptor activity modifying protein or RAMP. RAMPs are single-transmembrane-domain proteins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0008277 regulation of G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2YX8_A 3N7R_C 3N7P_D 3N7S_C 2XVT_A 3AQF_A 3AQE_B.
Probab=40.90 E-value=25 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.698 Sum_probs=17.7
Q ss_pred ccCCchHHHHHHHHHHHHHHhhhccCCCC
Q psy1130 42 IDCNFPKAFIQFVLIMVHAFQLLFIDCNF 70 (135)
Q Consensus 42 ~~Cg~p~QliQFvi~~~~~~~~LF~nC~~ 70 (135)
.+|.||-++++=.+..+|-.+ |.||+-
T Consensus 46 ~~C~wPn~lvd~ff~~iH~~y--F~nC~~ 72 (113)
T PF04901_consen 46 LGCFWPNPLVDDFFIAIHRQY--FSNCSL 72 (113)
T ss_dssp CT--SS-HHHHHHHHHHHHHC--TTTS-S
T ss_pred cCCCCCCHHHHHHHHHHHHHH--HhcCCC
Confidence 499999999987777777654 789976
No 11
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.26 E-value=20 Score=29.96 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCccccc
Q psy1130 78 IGSHAVMFFFLFRNFYKEQYVKPVKTAK 105 (135)
Q Consensus 78 ~~~~~~~~l~LF~~FY~ksY~~~~~~~~ 105 (135)
.+++.++|++| .|+++||.++
T Consensus 269 VLIMvIIYLIL-------RYRRKKKmkK 289 (299)
T PF02009_consen 269 VLIMVIIYLIL-------RYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHH-------HHHHHhhhhH
Confidence 34455555555 6777555443
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.72 E-value=2.3e+02 Score=19.57 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=3.0
Q ss_pred cCCCCCC
Q psy1130 108 TQKVPDS 114 (135)
Q Consensus 108 ~~~~~~~ 114 (135)
+|..+++
T Consensus 37 ~~~v~~~ 43 (95)
T PF07172_consen 37 ENEVQDD 43 (95)
T ss_pred CCCCCcc
Confidence 3444444
Done!