Query psy1130
Match_columns 135
No_of_seqs 161 out of 791
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:24:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqe_A Receptor activity-modif 51.1 11 0.00037 25.4 2.6 29 42-72 59-87 (91)
2 3n7s_C Receptor activity-modif 27.8 44 0.0015 22.5 2.7 27 43-71 60-86 (96)
3 3arc_L Photosystem II reaction 14.2 1.8E+02 0.0063 16.0 3.8 25 70-94 12-36 (37)
4 1t6u_A Superoxide dismutase [N 12.0 85 0.0029 21.8 1.3 18 13-30 2-19 (117)
5 1vf5_A Cytochrome B6; photosyn 7.5 2.9E+02 0.0099 20.9 2.9 24 78-101 91-114 (215)
6 4hwx_A Sermetstatin, neutral p 6.6 98 0.0033 21.3 -0.2 23 3-26 23-45 (114)
7 3cx5_C Cytochrome B-C1 complex 5.9 4.1E+02 0.014 21.8 3.2 25 78-102 87-111 (385)
8 2qjy_A Cytochrome B; cytochrom 5.7 4.2E+02 0.014 22.2 3.2 26 77-102 101-126 (445)
9 2sic_I Streptomyces subtilisin 5.2 1.7E+02 0.0058 19.8 0.4 22 4-26 21-42 (107)
10 1fll_X B-cell surface antigen 4.4 2.6E+02 0.009 14.2 0.7 13 11-23 11-23 (26)
No 1
>3aqe_A Receptor activity-modifying protein 2; transmembrane, GPCR, adrenomedullin, trafficking, CLR, CGRP, endoplasmic reticulum, disease; 2.00A {Homo sapiens} PDB: 3aqf_A 2xvt_A
Probab=51.06 E-value=11 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.637 Sum_probs=23.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhhhccCCCCch
Q psy1130 42 IDCNFPKAFIQFVLIMVHAFQLLFIDCNFPK 72 (135)
Q Consensus 42 ~~Cg~p~QliQFvi~~~~~~~~LF~nC~~p~ 72 (135)
.+|.||-++++=.++-+|-.+ |.||+...
T Consensus 59 l~C~wPNplve~ff~~iH~~y--F~NCs~~~ 87 (91)
T 3aqe_A 59 FDLGFPNPLAERIIFETHQIH--FANCSLVQ 87 (91)
T ss_dssp TTCCSSCHHHHHHHHHHHHHT--TTTCCSCC
T ss_pred cCCCCCcHHHHHHHHHHHHHH--hcCCCCCC
Confidence 499999999998787777654 78999753
No 2
>3n7s_C Receptor activity-modifying protein 1; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_C* 3n7p_D* 2yx8_A
Probab=27.83 E-value=44 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=17.9
Q ss_pred cCCchHHHHHHHHHHHHHHhhhccCCCCc
Q psy1130 43 DCNFPKAFIQFVLIMVHAFQLLFIDCNFP 71 (135)
Q Consensus 43 ~Cg~p~QliQFvi~~~~~~~~LF~nC~~p 71 (135)
+|.||-.+++=.++-+|-.+ |.||+..
T Consensus 60 ~C~wPN~lve~ff~~iH~~y--F~nC~~~ 86 (96)
T 3n7s_C 60 GCFWPNAEVDRFFLAVHGRY--FRSCPIS 86 (96)
T ss_dssp TCCSSCHHHHHHHHHHHHHH--STTSCSS
T ss_pred CCCCCCHHHHHHHHHHHHHH--hcCCCCC
Confidence 78887777776566666543 6778763
No 3
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=14.23 E-value=1.8e+02 Score=16.04 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhHHH
Q psy1130 70 FPKAFVWWIGSHAVMFFFLFRNFYK 94 (135)
Q Consensus 70 ~p~~~~~~~~~~~~~~l~LF~~FY~ 94 (135)
..+..+++++.-....-+||++++.
T Consensus 12 LNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 12 LNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHHhhhhcc
Confidence 3566777777777888889988764
No 4
>1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A
Probab=11.96 E-value=85 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=15.6
Q ss_pred eeccCCCCCcchhHHHHH
Q psy1130 13 CQPLDLGNHPRTMRIQFV 30 (135)
Q Consensus 13 c~~~~~~~~~~~~~IQFv 30 (135)
||-++.=|||+..||.=.
T Consensus 2 CdiPCGIYDp~~Ari~a~ 19 (117)
T 1t6u_A 2 CDLPCGVYDPAQARIEAE 19 (117)
T ss_dssp CSSCCCCCCTHHHHHHHH
T ss_pred CCCCcCCCCcHHHHHHHH
Confidence 999999999998888743
No 5
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=7.53 E-value=2.9e+02 Score=20.85 Aligned_cols=24 Identities=21% Similarity=0.359 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCc
Q psy1130 78 IGSHAVMFFFLFRNFYKEQYVKPV 101 (135)
Q Consensus 78 ~~~~~~~~l~LF~~FY~ksY~~~~ 101 (135)
+++....++-++..+|+.+|++++
T Consensus 91 s~ffi~~ylHi~Rglyygsy~~p~ 114 (215)
T 1vf5_A 91 SMMVLMMILHVFRVYLTGGFKKPR 114 (215)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhhhcccCC
Confidence 344566667789999999997654
No 6
>4hwx_A Sermetstatin, neutral proteinase inhibitor SCNPI; streptomyces subtilisin inhibitor fold, hydrolase inhibitor; 1.90A {Streptomyces caespitosus} PDB: 4hx2_B* 4hx3_B
Probab=6.57 E-value=98 Score=21.35 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCCCcceeeeccCCCCCcchhH
Q psy1130 3 GWLTGDYSFKCQPLDLGNHPRTMR 26 (135)
Q Consensus 3 ~~~~~~y~~~c~~~~~~~~~~~~~ 26 (135)
+|+- .+.+-|.|...+.||++..
T Consensus 23 ~~~R-avtL~C~P~~~GtHP~a~~ 45 (114)
T 4hwx_A 23 TVLR-ATTLSCAYTAEGTHPAPRA 45 (114)
T ss_dssp EEEE-EEEEEESSSEESSCSSHHH
T ss_pred Ccce-EEEEEeCCCCCCCCCCHHH
Confidence 3444 4889999977888888654
No 7
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=5.87 E-value=4.1e+02 Score=21.78 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCcc
Q psy1130 78 IGSHAVMFFFLFRNFYKEQYVKPVK 102 (135)
Q Consensus 78 ~~~~~~~~l~LF~~FY~ksY~~~~~ 102 (135)
++.....++-++..+|+.+|+++++
T Consensus 87 s~ffi~iylHi~Rglyygsy~~Pr~ 111 (385)
T 3cx5_C 87 SFFFMVMFMHMAKGLYYGSYRSPRV 111 (385)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Confidence 3456667777899999999976543
No 8
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=5.72 E-value=4.2e+02 Score=22.21 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCCcc
Q psy1130 77 WIGSHAVMFFFLFRNFYKEQYVKPVK 102 (135)
Q Consensus 77 ~~~~~~~~~l~LF~~FY~ksY~~~~~ 102 (135)
.+++....++-++..+|+.+|+++++
T Consensus 101 As~ffi~iylHi~RglyygsY~~Pr~ 126 (445)
T 2qjy_A 101 ASLFFIAVYLHIFRGLYYGSYKAPRE 126 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcc
Confidence 34456677777899999999976543
No 9
>2sic_I Streptomyces subtilisin inhibitor (SSI); complex (proteinase/inhibitor); 1.80A {Bacillus amyloliquefaciens} SCOP: d.84.1.1 PDB: 3ssi_A 3sic_I 2tld_I 5sic_I
Probab=5.25 E-value=1.7e+02 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=16.0
Q ss_pred CCCCCcceeeeccCCCCCcchhH
Q psy1130 4 WLTGDYSFKCQPLDLGNHPRTMR 26 (135)
Q Consensus 4 ~~~~~y~~~c~~~~~~~~~~~~~ 26 (135)
|+- .|.+-|.|.-.+.||++..
T Consensus 21 ~~r-~~tL~C~P~~~GtHP~a~a 42 (107)
T 2sic_I 21 PER-AVTLTCAPGPSGTHPAAGS 42 (107)
T ss_dssp CCE-EEEEECSSSCEESCTTHHH
T ss_pred cee-EEEEEeCCCCCCCCCCHHH
Confidence 444 4999999977778887643
No 10
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=4.44 E-value=2.6e+02 Score=14.21 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=8.2
Q ss_pred eeeeccCCCCCcc
Q psy1130 11 FKCQPLDLGNHPR 23 (135)
Q Consensus 11 ~~c~~~~~~~~~~ 23 (135)
.+|||+..-.-.|
T Consensus 11 ~~~qPVaQEdGKe 23 (26)
T 1fll_X 11 HGSQPVTQEDGXX 23 (26)
T ss_dssp CCSSSCCCCCC--
T ss_pred hcCccchhhcccc
Confidence 4699998765554
Done!