Query psy1130
Match_columns 135
No_of_seqs 161 out of 791
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 23:24:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pg4a1 a.4.5.48 (A:1-92) Unch 16.3 21 0.0016 21.5 0.8 14 20-33 1-14 (92)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 15.3 79 0.0058 16.1 3.8 25 70-94 12-36 (37)
3 d1ppjc2 f.21.1.2 (C:15-260) Mi 8.4 96 0.007 21.9 2.5 23 78-100 74-96 (246)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 8.2 1.4E+02 0.01 21.3 3.4 23 79-101 88-110 (261)
5 d1u7ka_ a.73.1.1 (A:) AKV caps 7.6 54 0.0039 21.4 0.6 23 9-31 21-43 (131)
6 d1q90b_ f.21.1.2 (B:) Cytochro 6.6 1.5E+02 0.011 20.4 2.8 22 79-100 89-110 (212)
7 d1bqka_ b.6.1.1 (A:) Pseudoazu 4.8 73 0.0053 20.0 -0.1 9 7-15 72-80 (124)
8 d2cg7a1 g.27.1.1 (A:109-151) F 4.6 1.2E+02 0.0084 16.1 0.7 8 9-16 36-43 (43)
9 d1adwa_ b.6.1.1 (A:) Pseudoazu 4.4 85 0.0062 19.3 0.1 9 7-15 72-80 (123)
10 d1paza_ b.6.1.1 (A:) Pseudoazu 4.3 82 0.006 19.6 -0.1 9 7-15 72-80 (120)
No 1
>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]}
Probab=16.26 E-value=21 Score=21.51 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.1
Q ss_pred CCcchhHHHHHHHH
Q psy1130 20 NHPRTMRIQFVLIM 33 (135)
Q Consensus 20 ~~~~~~~IQFviv~ 33 (135)
+|+++.|.||.+++
T Consensus 1 mddetlrlqfghli 14 (92)
T d2pg4a1 1 MDDETLRLQFGHLI 14 (92)
T ss_dssp CCCGGGGSBHHHHH
T ss_pred CchhHHHHHhhhHH
Confidence 47889999998644
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.32 E-value=79 Score=16.13 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhHHH
Q psy1130 70 FPKAFVWWIGSHAVMFFFLFRNFYK 94 (135)
Q Consensus 70 ~p~~~~~~~~~~~~~~l~LF~~FY~ 94 (135)
..+..+++++......-+||++++.
T Consensus 12 LNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 12 LNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhc
Confidence 3466677777777777789988764
No 3
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.40 E-value=96 Score=21.93 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCC
Q psy1130 78 IGSHAVMFFFLFRNFYKEQYVKP 100 (135)
Q Consensus 78 ~~~~~~~~l~LF~~FY~ksY~~~ 100 (135)
++.....++-++..+|+.+|+++
T Consensus 74 s~~~~~~~lHm~r~~~~~sy~~~ 96 (246)
T d1ppjc2 74 SMFFICLYMHVGRGLYYGSYTFL 96 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGSH
T ss_pred HHHHHHHHHHHHHHHHhcCccch
Confidence 34566777789999999999653
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.25 E-value=1.4e+02 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHhhcCCc
Q psy1130 79 GSHAVMFFFLFRNFYKEQYVKPV 101 (135)
Q Consensus 79 ~~~~~~~l~LF~~FY~ksY~~~~ 101 (135)
+.....++-++..+|..+|++++
T Consensus 88 ~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 88 FFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHhccccCcc
Confidence 44566777799999999996653
No 5
>d1u7ka_ a.73.1.1 (A:) AKV capsid {AKV murine leukemia virus [TaxId: 11791]}
Probab=7.57 E-value=54 Score=21.40 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.7
Q ss_pred cceeeeccCCCCCcchhHHHHHH
Q psy1130 9 YSFKCQPLDLGNHPRTMRIQFVL 31 (135)
Q Consensus 9 y~~~c~~~~~~~~~~~~~IQFvi 31 (135)
|+|+.+...++.||.+.+=++=.
T Consensus 21 ~nwK~~~p~fse~P~~~i~~~~~ 43 (131)
T d1u7ka_ 21 YNWKNNNPSFSEDPGKLTALIES 43 (131)
T ss_dssp HHHHHTSCCTTTCHHHHHHHHHH
T ss_pred HHHHHhCCchhhCHHHHHHHHHH
Confidence 89999999999999988766643
No 6
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.61 E-value=1.5e+02 Score=20.40 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHHHHhhcCC
Q psy1130 79 GSHAVMFFFLFRNFYKEQYVKP 100 (135)
Q Consensus 79 ~~~~~~~l~LF~~FY~ksY~~~ 100 (135)
+.....++-++..||..+|+++
T Consensus 89 ~~~~~~~lHm~r~~~~gsyk~p 110 (212)
T d1q90b_ 89 MMVLMMVLHVFRVYLTGGFKRP 110 (212)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHcCcccCc
Confidence 4455667778899999999654
No 7
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}
Probab=4.75 E-value=73 Score=20.03 Aligned_cols=9 Identities=56% Similarity=1.268 Sum_probs=7.2
Q ss_pred CCcceeeec
Q psy1130 7 GDYSFKCQP 15 (135)
Q Consensus 7 ~~y~~~c~~ 15 (135)
|.|.|.|.|
T Consensus 72 G~Y~Y~C~p 80 (124)
T d1bqka_ 72 GVYGVKCTP 80 (124)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEecc
Confidence 569999976
No 8
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=1.2e+02 Score=16.06 Aligned_cols=8 Identities=25% Similarity=0.970 Sum_probs=5.6
Q ss_pred cceeeecc
Q psy1130 9 YSFKCQPL 16 (135)
Q Consensus 9 y~~~c~~~ 16 (135)
=.|+|+|+
T Consensus 36 G~~~Cd~~ 43 (43)
T d2cg7a1 36 GEWTCKPI 43 (43)
T ss_dssp TEEEEEEC
T ss_pred ccEEeccC
Confidence 35888875
No 9
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}
Probab=4.38 E-value=85 Score=19.29 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=7.3
Q ss_pred CCcceeeec
Q psy1130 7 GDYSFKCQP 15 (135)
Q Consensus 7 ~~y~~~c~~ 15 (135)
|.|.|.|.|
T Consensus 72 G~Y~Y~C~p 80 (123)
T d1adwa_ 72 GLYGVKCTP 80 (123)
T ss_dssp EEEEEECGG
T ss_pred CeEEEEEcc
Confidence 569999976
No 10
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}
Probab=4.32 E-value=82 Score=19.64 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=7.2
Q ss_pred CCcceeeec
Q psy1130 7 GDYSFKCQP 15 (135)
Q Consensus 7 ~~y~~~c~~ 15 (135)
|.|.|.|.|
T Consensus 72 G~y~Y~Ctp 80 (120)
T d1paza_ 72 GAYLVKCTP 80 (120)
T ss_dssp EEEEEECTT
T ss_pred CeEEEEEee
Confidence 569999976
Done!