RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1130
         (135 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 51  IQFVLIMVHAFQLLFI----DCNFPKAFVWWIG-SHAVMFFFLFRNFYKEQYVKPVKTAK 105
           IQFVL + H    L+      C  P      +G  + V + FLF NFY + Y KP K  K
Sbjct: 185 IQFVLGLAHVGYALYNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKKKK 244


>gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional.
          Length = 143

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 107 CTQKVPDSVPGKVEV 121
            T +   S PGKV+V
Sbjct: 24  STSRALYSTPGKVKV 38


>gnl|CDD|150566 pfam09907, DUF2136, Uncharacterized protein conserved in bacteria
          (DUF2136).  This domain, found in various hypothetical
          prokaryotic proteins, has no known function.
          Length = 76

 Score = 25.2 bits (56), Expect = 5.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 65 FIDCNFPKAFVWWIGSHA 82
           ID    K ++ +IG+HA
Sbjct: 53 AIDFRRGKVYIKFIGTHA 70


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.335    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,859,372
Number of extensions: 599986
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 31
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.3 bits)