RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1130
         (135 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.097
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 11/34 (32%)

Query: 94  KEQYVKPVKTAKACTQKV--PDSVP-----GKVE 120
           ++Q +K ++     + K+   DS P       +E
Sbjct: 18  EKQALKKLQA----SLKLYADDSAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.61
 Identities = 20/113 (17%), Positives = 27/113 (23%), Gaps = 54/113 (47%)

Query: 4   WLTG-------DY------SFKCQPL--------------DLGNHPRTMRIQFVLIMVHA 36
           WL         DY      S    PL               LG  P  +R        H+
Sbjct: 218 WLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274

Query: 37  FQLLFIDCNFPKAFI-------QFVLIMVHAFQLLFIDCNFPKAFVWWIGSHA 82
             L+          I        F + +  A  +LF           +IG   
Sbjct: 275 QGLV------TAVAIAETDSWESFFVSVRKAITVLF-----------FIGVRC 310


>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
           regulation, transcription; HET: GLA ATP; 2.10A
           {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
          Length = 520

 Score = 26.3 bits (57), Expect = 4.6
 Identities = 5/42 (11%), Positives = 13/42 (30%)

Query: 28  QFVLIMVHAFQLLFIDCNFPKAFIQFVLIMVHAFQLLFIDCN 69
           Q   +       L+++         F    +   ++ F+  N
Sbjct: 210 QATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIAN 251


>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P,
           endocytosis/exocytosis complex; 2.85A {Saccharomyces
           cerevisiae} SCOP: a.118.17.2
          Length = 235

 Score = 25.7 bits (56), Expect = 5.0
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 8/67 (11%)

Query: 49  AFIQFVLI--MVHAFQLLFIDCNFPKA--FVWWIGSHAVMFFFLFRNFYKEQYVKPVKTA 104
           A I+F  I   V  FQ +F +     +   V W        F L      +Q +     +
Sbjct: 143 AVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI----DKQLLNDEMLS 198

Query: 105 KACTQKV 111
               +  
Sbjct: 199 PGSIKSS 205


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,064,624
Number of extensions: 104687
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 6
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.3 bits)