Query psy11302
Match_columns 764
No_of_seqs 708 out of 3599
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:27:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 7.4E-55 1.6E-59 421.8 15.4 150 416-587 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 2.3E-53 5.1E-58 414.0 12.7 150 417-587 2-155 (155)
3 PF12148 DUF3590: Protein of u 100.0 2.6E-38 5.7E-43 273.8 5.9 85 135-224 1-85 (85)
4 cd01807 GDX_N ubiquitin-like d 99.7 1.7E-17 3.8E-22 142.7 8.9 73 1-74 1-73 (74)
5 cd01797 NIRF_N amino-terminal 99.7 5.4E-17 1.2E-21 141.4 8.8 75 1-76 1-77 (78)
6 cd01793 Fubi Fubi ubiquitin-li 99.7 1.4E-16 3E-21 137.2 9.1 73 1-76 1-73 (74)
7 PTZ00044 ubiquitin; Provisiona 99.7 2.4E-16 5.2E-21 135.9 9.4 75 1-76 1-75 (76)
8 cd01802 AN1_N ubiquitin-like d 99.6 5.5E-16 1.2E-20 142.0 9.2 75 1-76 28-102 (103)
9 cd01805 RAD23_N Ubiquitin-like 99.6 1.5E-15 3.2E-20 131.2 9.7 74 1-75 1-76 (77)
10 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.4E-15 3E-20 130.9 8.1 71 1-72 2-72 (73)
11 cd01810 ISG15_repeat2 ISG15 ub 99.6 1.6E-15 3.5E-20 130.6 8.4 73 3-76 1-73 (74)
12 cd01806 Nedd8 Nebb8-like ubiq 99.6 2.7E-15 5.9E-20 128.8 9.8 75 1-76 1-75 (76)
13 cd01803 Ubiquitin Ubiquitin. U 99.6 2.2E-15 4.8E-20 129.3 9.2 75 1-76 1-75 (76)
14 cd01804 midnolin_N Ubiquitin-l 99.6 3.2E-15 6.9E-20 130.2 8.6 74 1-76 2-75 (78)
15 cd01794 DC_UbP_C dendritic cel 99.6 3E-15 6.5E-20 127.8 7.6 69 3-72 1-69 (70)
16 cd01798 parkin_N amino-termina 99.6 3.2E-15 6.9E-20 127.2 7.6 70 3-73 1-70 (70)
17 cd01809 Scythe_N Ubiquitin-lik 99.6 9.1E-15 2E-19 124.2 8.9 72 1-73 1-72 (72)
18 KOG0005|consensus 99.6 2.6E-15 5.6E-20 120.7 4.6 70 1-71 1-70 (70)
19 cd01808 hPLIC_N Ubiquitin-like 99.5 1.6E-14 3.4E-19 123.3 8.3 71 1-73 1-71 (71)
20 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.2E-14 2.5E-19 127.2 7.5 73 1-74 3-77 (80)
21 KOG0003|consensus 99.5 8.2E-16 1.8E-20 137.4 -0.0 76 1-77 1-76 (128)
22 TIGR00601 rad23 UV excision re 99.5 6.2E-14 1.3E-18 155.0 13.4 76 1-77 1-79 (378)
23 KOG0004|consensus 99.5 1.7E-14 3.7E-19 138.1 5.3 79 1-80 1-79 (156)
24 KOG1244|consensus 99.5 6.4E-15 1.4E-19 151.0 2.1 85 280-366 238-330 (336)
25 PF00240 ubiquitin: Ubiquitin 99.5 6.6E-14 1.4E-18 118.3 7.9 68 6-74 1-68 (69)
26 cd01790 Herp_N Homocysteine-re 99.5 5E-14 1.1E-18 122.6 7.2 71 1-72 2-78 (79)
27 cd01796 DDI1_N DNA damage indu 99.5 1E-13 2.2E-18 118.6 7.3 68 3-71 1-70 (71)
28 cd01800 SF3a120_C Ubiquitin-li 99.4 4.7E-13 1E-17 115.9 7.6 68 8-76 5-72 (76)
29 cd01812 BAG1_N Ubiquitin-like 99.4 5.8E-13 1.2E-17 113.0 7.8 70 1-72 1-70 (71)
30 KOG0010|consensus 99.4 6.6E-13 1.4E-17 147.2 9.7 76 1-78 16-91 (493)
31 cd01763 Sumo Small ubiquitin-r 99.4 1.5E-12 3.3E-17 115.8 9.6 75 1-76 12-86 (87)
32 KOG0011|consensus 99.4 3E-12 6.5E-17 135.8 11.3 75 1-76 1-77 (340)
33 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.1E-12 2.5E-17 112.7 5.0 57 16-72 15-74 (75)
34 cd01813 UBP_N UBP ubiquitin pr 99.3 4E-12 8.7E-17 109.8 7.8 70 1-72 1-73 (74)
35 smart00213 UBQ Ubiquitin homol 99.3 7.2E-12 1.6E-16 103.3 7.4 64 1-66 1-64 (64)
36 cd01814 NTGP5 Ubiquitin-like N 99.3 6.6E-12 1.4E-16 115.1 6.9 77 2-79 6-96 (113)
37 cd01799 Hoil1_N Ubiquitin-like 99.1 1.3E-10 2.8E-15 100.7 7.1 65 6-72 8-74 (75)
38 cd01769 UBL Ubiquitin-like dom 99.0 5.6E-10 1.2E-14 93.3 7.5 68 4-72 1-68 (69)
39 PF15227 zf-C3HC4_4: zinc fing 99.0 2.2E-10 4.7E-15 88.3 3.0 42 691-732 1-42 (42)
40 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.2E-09 2.5E-14 93.2 7.5 71 1-72 1-72 (72)
41 smart00504 Ubox Modified RING 99.0 8.3E-10 1.8E-14 91.5 5.1 62 688-755 1-62 (63)
42 cd01795 USP48_C USP ubiquitin- 98.9 2E-09 4.4E-14 96.3 6.6 63 12-75 16-79 (107)
43 PF04564 U-box: U-box domain; 98.9 1.6E-09 3.5E-14 93.3 4.6 67 686-757 2-68 (73)
44 TIGR00599 rad18 DNA repair pro 98.9 1.4E-09 3E-14 120.8 4.8 71 680-756 18-88 (397)
45 PF14835 zf-RING_6: zf-RING of 98.8 1.1E-09 2.4E-14 90.6 2.1 63 683-753 2-65 (65)
46 KOG0287|consensus 98.8 3E-09 6.4E-14 112.8 3.2 69 682-756 17-85 (442)
47 KOG0825|consensus 98.8 2.4E-09 5.2E-14 122.8 2.4 50 315-365 214-264 (1134)
48 KOG0001|consensus 98.8 3.9E-08 8.4E-13 81.8 9.1 73 2-75 1-73 (75)
49 KOG1512|consensus 98.7 2.9E-09 6.2E-14 110.5 1.1 53 310-365 307-361 (381)
50 KOG4248|consensus 98.7 3.3E-08 7.2E-13 117.4 9.2 75 2-78 4-78 (1143)
51 PLN03208 E3 ubiquitin-protein 98.7 1.3E-08 2.9E-13 102.2 3.4 55 685-739 15-81 (193)
52 PF13881 Rad60-SLD_2: Ubiquiti 98.6 2.1E-07 4.6E-12 86.6 10.4 75 2-77 4-92 (111)
53 KOG0823|consensus 98.6 3.4E-08 7.3E-13 101.0 3.2 53 686-739 45-97 (230)
54 PF00628 PHD: PHD-finger; Int 98.6 1.6E-08 3.5E-13 80.6 0.7 47 318-365 1-49 (51)
55 cd01789 Alp11_N Ubiquitin-like 98.5 2.7E-07 6E-12 81.6 8.4 70 2-72 3-80 (84)
56 PF13923 zf-C3HC4_2: Zinc fing 98.5 6.6E-08 1.4E-12 73.1 2.6 38 691-732 1-39 (39)
57 COG5432 RAD18 RING-finger-cont 98.5 6.4E-08 1.4E-12 101.0 3.1 68 683-756 20-87 (391)
58 KOG0317|consensus 98.5 7.8E-08 1.7E-12 101.0 3.0 50 686-739 237-286 (293)
59 KOG0311|consensus 98.5 4.3E-08 9.4E-13 105.1 0.9 74 682-759 37-111 (381)
60 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.1E-07 2.4E-12 75.8 2.9 47 687-737 1-48 (50)
61 KOG0320|consensus 98.4 9.6E-08 2.1E-12 94.0 2.6 49 687-739 130-180 (187)
62 KOG4299|consensus 98.4 7.6E-08 1.6E-12 109.9 1.5 50 316-366 253-304 (613)
63 PLN02560 enoyl-CoA reductase 98.4 5.9E-07 1.3E-11 97.7 8.2 69 1-70 1-80 (308)
64 PHA02929 N1R/p28-like protein; 98.4 2.3E-07 5E-12 96.9 4.3 49 686-738 172-228 (238)
65 PF00097 zf-C3HC4: Zinc finger 98.4 2.5E-07 5.5E-12 70.4 2.9 39 691-732 1-41 (41)
66 cd01788 ElonginB Ubiquitin-lik 98.4 1E-06 2.2E-11 81.0 7.4 73 1-74 1-81 (119)
67 PF13639 zf-RING_2: Ring finge 98.4 1.9E-07 4.1E-12 72.4 2.2 40 690-733 2-44 (44)
68 KOG2177|consensus 98.3 4.7E-07 1E-11 94.7 4.2 69 681-757 6-74 (386)
69 cd04718 BAH_plant_2 BAH, or Br 98.3 4.6E-07 9.9E-12 87.7 3.3 30 340-370 1-30 (148)
70 KOG2660|consensus 98.3 4.2E-07 9E-12 97.2 3.0 75 683-761 10-87 (331)
71 PF13445 zf-RING_UBOX: RING-ty 98.2 5.5E-07 1.2E-11 69.8 2.5 39 691-730 1-43 (43)
72 smart00249 PHD PHD zinc finger 98.2 7.2E-07 1.6E-11 68.6 3.2 45 319-364 2-47 (47)
73 PF14560 Ubiquitin_2: Ubiquiti 98.2 3.3E-06 7.2E-11 75.0 7.7 70 2-72 3-82 (87)
74 PHA02926 zinc finger-like prot 98.2 7E-07 1.5E-11 90.9 3.8 57 682-738 164-231 (242)
75 cd00162 RING RING-finger (Real 98.2 8.6E-07 1.9E-11 67.2 3.4 44 690-736 1-45 (45)
76 KOG4443|consensus 98.2 6E-07 1.3E-11 102.9 3.5 100 255-366 12-117 (694)
77 cd01801 Tsc13_N Ubiquitin-like 98.2 2.9E-06 6.3E-11 73.8 6.3 69 2-70 2-74 (77)
78 COG5574 PEX10 RING-finger-cont 98.1 1.8E-06 3.8E-11 90.0 2.6 51 686-739 213-264 (271)
79 smart00184 RING Ring finger. E 98.1 3.2E-06 7E-11 61.8 3.3 39 691-732 1-39 (39)
80 KOG4159|consensus 98.0 2.3E-06 4.9E-11 95.5 3.1 75 684-762 80-157 (398)
81 KOG0006|consensus 98.0 1.1E-05 2.3E-10 85.6 7.8 71 1-72 1-74 (446)
82 cd00196 UBQ Ubiquitin-like pro 98.0 1.8E-05 3.8E-10 62.2 7.3 67 5-72 2-68 (69)
83 PF14634 zf-RING_5: zinc-RING 98.0 3.6E-06 7.7E-11 65.4 2.7 41 690-734 1-44 (44)
84 KOG2164|consensus 97.9 6.1E-06 1.3E-10 92.9 3.0 52 688-739 186-238 (513)
85 PF11543 UN_NPL4: Nuclear pore 97.9 1.7E-05 3.8E-10 69.7 4.8 69 1-71 5-78 (80)
86 KOG0383|consensus 97.8 9.9E-06 2.1E-10 95.6 3.7 67 298-368 20-95 (696)
87 KOG0957|consensus 97.8 4.8E-06 1E-10 92.5 0.7 50 316-365 544-596 (707)
88 KOG1245|consensus 97.7 6.5E-06 1.4E-10 104.1 -0.7 50 316-366 1108-1157(1404)
89 KOG1973|consensus 97.7 1.5E-05 3.3E-10 85.5 1.5 42 317-365 222-266 (274)
90 TIGR00570 cdk7 CDK-activating 97.6 4.2E-05 9.2E-10 82.5 3.7 49 688-739 3-56 (309)
91 smart00743 Agenet Tudor-like d 97.6 7.4E-05 1.6E-09 61.8 4.0 56 129-195 2-57 (61)
92 KOG0978|consensus 97.4 5.1E-05 1.1E-09 89.3 1.9 56 681-739 636-691 (698)
93 PF12678 zf-rbx1: RING-H2 zinc 97.4 9.1E-05 2E-09 64.0 2.5 40 690-733 21-73 (73)
94 KOG0824|consensus 97.3 0.00011 2.4E-09 78.1 2.4 49 688-739 7-55 (324)
95 COG5152 Uncharacterized conser 97.3 0.00011 2.4E-09 73.6 1.7 60 688-754 196-255 (259)
96 KOG0802|consensus 97.3 0.00012 2.6E-09 85.9 2.3 49 686-738 289-342 (543)
97 COG5222 Uncharacterized conser 97.2 0.00024 5.1E-09 75.0 3.6 63 689-756 275-339 (427)
98 KOG0955|consensus 97.2 0.00018 3.9E-09 88.4 2.7 54 315-371 218-273 (1051)
99 COG5034 TNG2 Chromatin remodel 97.1 0.00021 4.5E-09 74.4 1.6 36 327-365 230-268 (271)
100 KOG1813|consensus 97.0 0.00034 7.4E-09 74.2 2.0 60 688-754 241-300 (313)
101 cd01811 OASL_repeat1 2'-5' oli 96.9 0.0046 9.9E-08 53.2 8.0 70 1-72 1-75 (80)
102 KOG1769|consensus 96.8 0.0077 1.7E-07 54.6 9.3 74 2-76 22-95 (99)
103 COG5243 HRD1 HRD ubiquitin lig 96.8 0.00072 1.6E-08 73.5 3.0 48 686-737 285-345 (491)
104 KOG4628|consensus 96.8 0.00066 1.4E-08 74.5 2.5 48 689-739 230-280 (348)
105 PF05641 Agenet: Agenet domain 96.8 0.0013 2.8E-08 55.9 3.6 55 130-195 1-64 (68)
106 KOG1872|consensus 96.7 0.0028 6.1E-08 71.3 6.2 70 3-74 6-76 (473)
107 KOG0297|consensus 96.7 0.0011 2.4E-08 74.8 3.0 66 684-754 17-83 (391)
108 KOG4495|consensus 96.6 0.0042 9E-08 55.7 5.3 59 2-62 4-64 (110)
109 COG5540 RING-finger-containing 96.5 0.0014 3.1E-08 69.6 2.7 49 687-738 322-373 (374)
110 PF11789 zf-Nse: Zinc-finger o 96.5 0.0012 2.7E-08 54.3 1.7 44 686-731 9-53 (57)
111 KOG4367|consensus 96.5 0.002 4.3E-08 71.1 3.6 36 685-720 1-36 (699)
112 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0026 5.6E-08 56.4 3.2 50 688-738 21-83 (85)
113 KOG4323|consensus 96.4 0.0014 3.1E-08 74.2 2.0 49 319-368 171-225 (464)
114 KOG3493|consensus 96.4 0.0015 3.3E-08 54.4 1.4 69 2-71 3-71 (73)
115 KOG4172|consensus 96.2 0.0013 2.9E-08 53.0 0.2 47 689-738 8-55 (62)
116 KOG0954|consensus 96.0 0.0025 5.5E-08 74.5 1.3 50 315-367 270-321 (893)
117 KOG2879|consensus 95.9 0.0046 9.9E-08 65.3 2.6 50 685-737 236-287 (298)
118 PF13019 Telomere_Sde2: Telome 95.9 0.038 8.3E-07 54.8 8.8 77 1-78 1-89 (162)
119 PF10302 DUF2407: DUF2407 ubiq 95.7 0.021 4.5E-07 52.2 5.8 59 2-60 2-64 (97)
120 KOG1039|consensus 95.7 0.0057 1.2E-07 67.5 2.2 53 686-738 159-222 (344)
121 COG5141 PHD zinc finger-contai 95.6 0.0049 1.1E-07 69.2 1.6 52 316-370 193-246 (669)
122 PF00789 UBX: UBX domain; Int 95.5 0.079 1.7E-06 46.2 8.4 68 2-70 8-80 (82)
123 smart00333 TUDOR Tudor domain. 95.4 0.017 3.7E-07 46.7 3.6 54 129-196 2-55 (57)
124 PF08817 YukD: WXG100 protein 95.3 0.032 6.9E-07 48.7 5.1 69 2-71 4-79 (79)
125 KOG0013|consensus 95.2 0.029 6.3E-07 57.3 5.4 64 9-73 155-218 (231)
126 PF13831 PHD_2: PHD-finger; PD 95.2 0.0033 7.1E-08 47.0 -1.1 35 329-365 2-36 (36)
127 KOG4265|consensus 94.8 0.017 3.7E-07 63.3 2.5 49 687-739 289-338 (349)
128 KOG1002|consensus 94.6 0.012 2.6E-07 66.7 0.9 53 686-738 534-587 (791)
129 COG3440 Predicted restriction 94.5 0.001 2.2E-08 70.9 -7.6 128 434-583 21-148 (301)
130 smart00166 UBX Domain present 94.4 0.2 4.4E-06 43.7 8.0 68 2-70 6-78 (80)
131 COG5219 Uncharacterized conser 94.3 0.03 6.4E-07 67.3 3.1 55 681-737 1462-1523(1525)
132 PF11470 TUG-UBL1: GLUT4 regul 94.3 0.14 3E-06 43.4 6.4 63 7-70 3-65 (65)
133 KOG4692|consensus 94.2 0.026 5.7E-07 61.3 2.3 49 686-738 420-468 (489)
134 PF11793 FANCL_C: FANCL C-term 94.1 0.017 3.7E-07 49.6 0.5 52 688-739 2-68 (70)
135 cd01770 p47_UBX p47-like ubiqu 93.9 0.28 6E-06 43.1 7.8 67 2-69 6-76 (79)
136 KOG0828|consensus 93.9 0.032 6.8E-07 63.1 2.2 50 685-737 568-634 (636)
137 KOG1785|consensus 93.6 0.032 6.9E-07 61.5 1.5 47 690-739 371-418 (563)
138 KOG1473|consensus 93.3 0.043 9.3E-07 67.2 2.2 47 316-366 344-390 (1414)
139 KOG0804|consensus 93.3 0.029 6.3E-07 62.9 0.8 47 685-737 172-222 (493)
140 cd04508 TUDOR Tudor domains ar 93.2 0.084 1.8E-06 41.1 3.0 48 133-193 1-48 (48)
141 cd01767 UBX UBX (ubiquitin reg 93.2 0.55 1.2E-05 40.6 8.4 66 2-70 4-74 (77)
142 cd01772 SAKS1_UBX SAKS1-like U 93.0 0.6 1.3E-05 40.9 8.3 67 2-70 6-77 (79)
143 KOG0825|consensus 93.0 0.03 6.4E-07 66.2 0.1 48 687-738 122-172 (1134)
144 KOG0956|consensus 92.9 0.044 9.6E-07 64.1 1.5 44 319-365 8-55 (900)
145 COG5417 Uncharacterized small 92.7 0.46 9.9E-06 41.1 6.9 65 6-71 12-81 (81)
146 COG5227 SMT3 Ubiquitin-like pr 92.5 0.42 9.1E-06 42.8 6.6 70 3-73 27-96 (103)
147 PF09465 LBR_tudor: Lamin-B re 92.3 0.18 4E-06 41.2 3.8 51 128-191 4-54 (55)
148 KOG4362|consensus 92.2 0.086 1.9E-06 62.6 2.7 59 680-739 13-71 (684)
149 KOG4739|consensus 92.2 0.042 9.1E-07 57.4 0.0 59 689-757 4-64 (233)
150 KOG1645|consensus 92.1 0.085 1.8E-06 58.7 2.2 50 688-739 4-58 (463)
151 KOG4185|consensus 92.0 0.12 2.7E-06 55.9 3.4 66 688-756 3-77 (296)
152 PF14447 Prok-RING_4: Prokaryo 91.9 0.065 1.4E-06 43.7 0.8 47 686-738 5-51 (55)
153 KOG1001|consensus 91.7 0.088 1.9E-06 63.3 2.0 48 688-738 454-501 (674)
154 KOG4275|consensus 91.7 0.038 8.3E-07 58.9 -0.9 43 688-738 300-343 (350)
155 KOG1814|consensus 91.6 0.3 6.5E-06 54.6 5.8 50 685-734 181-237 (445)
156 KOG3800|consensus 91.5 0.16 3.5E-06 54.4 3.4 47 690-739 2-53 (300)
157 PF11717 Tudor-knot: RNA bindi 91.4 0.38 8.3E-06 39.2 4.9 40 130-178 1-40 (55)
158 KOG1246|consensus 91.4 0.14 3.1E-06 63.9 3.4 47 319-367 158-204 (904)
159 KOG3002|consensus 91.2 0.16 3.4E-06 55.5 3.1 60 685-756 45-105 (299)
160 PF14570 zf-RING_4: RING/Ubox 90.8 0.17 3.6E-06 40.4 2.1 43 691-736 1-47 (48)
161 KOG3161|consensus 90.7 0.13 2.9E-06 59.9 2.1 44 685-735 8-55 (861)
162 COG5194 APC11 Component of SCF 90.6 0.21 4.5E-06 43.7 2.7 46 689-738 32-82 (88)
163 cd01774 Faf1_like2_UBX Faf1 ik 90.6 1.6 3.4E-05 39.0 8.4 67 2-70 6-82 (85)
164 KOG1639|consensus 90.4 0.48 1E-05 49.9 5.5 70 1-70 1-76 (297)
165 KOG1571|consensus 90.2 0.13 2.9E-06 56.5 1.4 46 686-738 303-348 (355)
166 cd01773 Faf1_like1_UBX Faf1 ik 89.5 2.4 5.3E-05 37.7 8.5 69 2-72 7-80 (82)
167 KOG3039|consensus 89.5 0.22 4.9E-06 52.1 2.4 49 687-739 220-272 (303)
168 KOG2817|consensus 89.4 0.24 5.2E-06 55.2 2.6 52 684-736 330-384 (394)
169 KOG0827|consensus 88.6 0.28 6E-06 54.4 2.4 50 689-739 5-58 (465)
170 smart00744 RINGv The RING-vari 88.3 0.46 1E-05 38.0 2.9 42 690-733 1-49 (49)
171 KOG1734|consensus 87.6 0.19 4.1E-06 53.3 0.4 52 686-739 222-283 (328)
172 PF09379 FERM_N: FERM N-termin 86.8 3 6.5E-05 35.8 7.4 67 5-72 1-76 (80)
173 cd06409 PB1_MUG70 The MUG70 pr 85.8 2.1 4.6E-05 38.4 6.0 39 1-40 1-39 (86)
174 cd01771 Faf1_UBX Faf1 UBX doma 84.8 5.7 0.00012 35.0 8.2 68 2-71 6-78 (80)
175 PRK06437 hypothetical protein; 83.6 6.4 0.00014 33.4 7.7 54 9-72 9-62 (67)
176 PF12158 DUF3592: Protein of u 83.4 2.2 4.7E-05 40.7 5.5 25 198-222 85-109 (148)
177 PHA03096 p28-like protein; Pro 83.3 0.65 1.4E-05 50.4 1.9 45 689-734 179-231 (284)
178 PF14446 Prok-RING_1: Prokaryo 82.7 0.7 1.5E-05 37.8 1.4 32 317-348 6-38 (54)
179 PF14453 ThiS-like: ThiS-like 82.5 5.8 0.00013 32.9 6.7 56 1-73 1-56 (57)
180 KOG0298|consensus 82.3 1 2.2E-05 56.8 3.2 53 682-738 1147-1200(1394)
181 PF11717 Tudor-knot: RNA bindi 82.0 2.2 4.8E-05 34.8 4.1 34 205-244 1-34 (55)
182 PF04641 Rtf2: Rtf2 RING-finge 81.6 1.9 4.2E-05 46.2 4.8 50 685-739 110-163 (260)
183 PLN00104 MYST -like histone ac 81.6 6.6 0.00014 45.2 9.2 49 126-178 50-98 (450)
184 COG5175 MOT2 Transcriptional r 80.3 1.1 2.4E-05 48.9 2.3 49 688-739 14-66 (480)
185 PF15057 DUF4537: Domain of un 79.5 8.4 0.00018 36.8 7.8 88 133-241 1-88 (124)
186 PF15446 zf-PHD-like: PHD/FYVE 79.5 0.96 2.1E-05 45.1 1.4 33 319-351 2-37 (175)
187 KOG2114|consensus 78.4 1.1 2.4E-05 54.2 1.8 45 686-737 838-883 (933)
188 PF15044 CLU_N: Mitochondrial 78.1 3.3 7.1E-05 36.2 4.2 55 18-73 2-58 (76)
189 PF05290 Baculo_IE-1: Baculovi 77.8 1.9 4.1E-05 41.5 2.8 52 687-739 79-134 (140)
190 PF12861 zf-Apc11: Anaphase-pr 77.7 0.99 2.1E-05 40.3 0.9 58 302-367 23-80 (85)
191 COG5220 TFB3 Cdk activating ki 77.1 0.72 1.6E-05 48.2 -0.2 49 687-738 9-65 (314)
192 KOG4299|consensus 76.7 3 6.5E-05 49.2 4.6 47 317-366 48-94 (613)
193 COG5236 Uncharacterized conser 76.7 1.9 4.1E-05 47.3 2.8 49 685-736 58-107 (493)
194 KOG4583|consensus 76.1 1.2 2.5E-05 48.9 1.0 71 2-73 11-87 (391)
195 PF06003 SMN: Survival motor n 75.6 2.2 4.8E-05 45.9 3.0 58 128-197 67-124 (264)
196 PLN02799 Molybdopterin synthas 75.4 9.7 0.00021 33.2 6.5 65 1-71 2-76 (82)
197 PF02891 zf-MIZ: MIZ/SP-RING z 75.3 1.6 3.4E-05 35.1 1.4 46 688-734 2-49 (50)
198 PF07800 DUF1644: Protein of u 74.9 2.9 6.3E-05 41.5 3.3 20 687-706 1-20 (162)
199 KOG1493|consensus 74.8 1.1 2.3E-05 39.1 0.2 36 701-737 45-81 (84)
200 PRK08364 sulfur carrier protei 74.0 17 0.00036 31.0 7.4 51 12-72 15-65 (70)
201 PF11620 GABP-alpha: GA-bindin 73.8 8.1 0.00018 34.6 5.4 61 14-75 6-66 (88)
202 KOG2930|consensus 72.7 2.4 5.1E-05 39.1 2.0 28 705-736 80-107 (114)
203 PF12754 Blt1: Cell-cycle cont 72.2 1.2 2.6E-05 48.5 0.0 61 2-62 80-159 (309)
204 PF10272 Tmpp129: Putative tra 71.3 2.7 5.9E-05 47.1 2.4 33 706-738 311-352 (358)
205 KOG3206|consensus 70.8 8.2 0.00018 39.9 5.5 57 15-72 17-80 (234)
206 KOG1941|consensus 70.1 2 4.4E-05 47.8 1.2 48 687-736 364-415 (518)
207 PF11793 FANCL_C: FANCL C-term 70.1 0.47 1E-05 40.7 -3.0 49 318-366 4-63 (70)
208 cd06406 PB1_P67 A PB1 domain i 70.1 11 0.00024 33.4 5.4 45 3-50 5-49 (80)
209 COG5109 Uncharacterized conser 70.0 2.6 5.7E-05 45.8 1.9 50 684-734 332-384 (396)
210 COG1198 PriA Primosomal protei 69.1 3.9 8.4E-05 50.0 3.3 108 301-448 436-554 (730)
211 PRK06488 sulfur carrier protei 68.5 29 0.00063 28.9 7.6 61 1-73 1-61 (65)
212 KOG0826|consensus 68.0 3.2 6.8E-05 45.5 2.0 44 687-734 299-343 (357)
213 PF07039 DUF1325: SGF29 tudor- 67.8 7 0.00015 37.7 4.2 88 131-234 1-96 (130)
214 PF11069 DUF2870: Protein of u 67.5 6.5 0.00014 36.0 3.6 34 43-77 3-36 (98)
215 cd00754 MoaD Ubiquitin domain 67.1 22 0.00048 30.3 6.8 55 12-72 17-75 (80)
216 PF07227 DUF1423: Protein of u 66.6 3.7 8.1E-05 46.9 2.3 63 302-366 115-191 (446)
217 KOG0012|consensus 66.4 7.3 0.00016 43.3 4.4 70 1-71 1-74 (380)
218 PF10781 DSRB: Dextransucrase 65.7 13 0.00028 30.7 4.5 43 130-181 1-43 (62)
219 KOG2932|consensus 65.7 2.5 5.5E-05 45.8 0.7 44 688-737 90-134 (389)
220 TIGR00595 priA primosomal prot 65.3 4.7 0.0001 47.4 3.0 48 300-368 213-263 (505)
221 smart00455 RBD Raf-like Ras-bi 64.9 17 0.00038 31.2 5.6 49 3-52 2-52 (70)
222 PF14836 Ubiquitin_3: Ubiquiti 64.9 41 0.00088 30.4 8.1 62 12-75 15-82 (88)
223 cd06407 PB1_NLP A PB1 domain i 64.6 21 0.00045 31.7 6.2 44 1-46 1-45 (82)
224 smart00666 PB1 PB1 domain. Pho 64.3 24 0.00052 30.3 6.5 44 2-47 3-46 (81)
225 cd01760 RBD Ubiquitin-like dom 64.0 15 0.00033 31.8 5.1 45 3-48 2-46 (72)
226 PF13639 zf-RING_2: Ring finge 63.7 0.53 1.1E-05 36.2 -3.6 43 318-365 2-44 (44)
227 smart00333 TUDOR Tudor domain. 62.2 13 0.00027 29.8 4.1 37 204-250 2-38 (57)
228 KOG4443|consensus 61.3 2.3 4.9E-05 50.4 -0.6 52 314-365 15-69 (694)
229 smart00295 B41 Band 4.1 homolo 61.0 50 0.0011 33.0 9.2 72 2-74 5-84 (207)
230 PRK05863 sulfur carrier protei 59.6 42 0.0009 28.2 6.9 61 1-73 1-61 (65)
231 KOG4642|consensus 59.4 7.1 0.00015 41.5 2.7 67 685-757 208-275 (284)
232 KOG3970|consensus 57.9 8.1 0.00018 40.3 2.7 51 688-738 50-106 (299)
233 PRK05659 sulfur carrier protei 56.8 62 0.0013 26.8 7.5 63 1-74 1-63 (66)
234 PF10367 Vps39_2: Vacuolar sor 56.0 3.9 8.5E-05 37.0 0.1 32 685-716 75-108 (109)
235 PRK10708 hypothetical protein; 55.7 25 0.00055 29.0 4.6 43 130-181 1-43 (62)
236 KOG1100|consensus 55.5 5.7 0.00012 41.3 1.2 41 691-739 161-202 (207)
237 KOG0383|consensus 55.4 8.4 0.00018 46.8 2.7 35 336-371 1-35 (696)
238 smart00293 PWWP domain with co 54.8 17 0.00036 30.4 3.7 61 130-193 1-61 (63)
239 PF07649 C1_3: C1-like domain; 54.4 4.9 0.00011 28.6 0.4 27 319-345 3-29 (30)
240 KOG1428|consensus 52.3 15 0.00032 47.4 4.0 17 496-512 884-900 (3738)
241 KOG3039|consensus 52.2 9 0.0002 40.5 2.0 38 685-722 40-77 (303)
242 PF12678 zf-rbx1: RING-H2 zinc 51.9 4 8.6E-05 35.2 -0.5 52 303-365 22-73 (73)
243 KOG0957|consensus 51.6 7.9 0.00017 44.6 1.6 52 318-369 121-181 (707)
244 PRK06944 sulfur carrier protei 51.2 1E+02 0.0022 25.3 8.0 61 1-73 1-61 (65)
245 KOG3899|consensus 51.1 9.1 0.0002 41.4 1.9 34 706-739 325-367 (381)
246 TIGR01682 moaD molybdopterin c 50.5 79 0.0017 27.3 7.4 58 10-72 14-75 (80)
247 KOG1812|consensus 50.3 8 0.00017 43.9 1.4 36 687-722 145-184 (384)
248 PF02597 ThiS: ThiS family; I 49.7 51 0.0011 27.8 6.1 58 12-72 13-72 (77)
249 PF13832 zf-HC5HC2H_2: PHD-zin 49.2 9 0.00019 35.2 1.4 28 318-347 57-86 (110)
250 TIGR01683 thiS thiamine biosyn 48.3 62 0.0013 26.9 6.2 58 8-73 3-60 (64)
251 KOG4445|consensus 48.3 9.3 0.0002 41.5 1.4 50 686-738 113-187 (368)
252 KOG2086|consensus 47.7 26 0.00057 39.5 4.8 67 2-69 307-377 (380)
253 cd00565 ThiS ThiaminS ubiquiti 47.3 61 0.0013 27.0 6.0 58 8-73 4-61 (65)
254 KOG3579|consensus 46.8 9.3 0.0002 41.2 1.1 37 687-723 267-307 (352)
255 PRK05580 primosome assembly pr 46.7 14 0.00029 45.2 2.7 47 300-367 381-430 (679)
256 PF03854 zf-P11: P-11 zinc fin 46.7 7.3 0.00016 31.1 0.3 32 704-739 16-48 (50)
257 PHA02929 N1R/p28-like protein; 46.6 8.3 0.00018 41.0 0.8 33 335-372 198-230 (238)
258 PF05883 Baculo_RING: Baculovi 46.4 22 0.00047 34.6 3.5 35 688-722 26-69 (134)
259 PF14732 UAE_UbL: Ubiquitin/SU 46.1 33 0.00072 30.7 4.4 57 15-71 2-67 (87)
260 PF06003 SMN: Survival motor n 46.0 25 0.00055 37.9 4.4 43 201-251 65-107 (264)
261 KOG1473|consensus 45.7 3.9 8.5E-05 51.1 -2.0 45 317-365 429-477 (1414)
262 PF02196 RBD: Raf-like Ras-bin 44.7 69 0.0015 27.5 6.0 53 3-56 3-57 (71)
263 PF00564 PB1: PB1 domain; Int 44.2 60 0.0013 27.9 5.7 45 2-48 3-48 (84)
264 KOG3268|consensus 44.2 17 0.00036 36.8 2.4 60 680-739 157-230 (234)
265 PF08783 DWNN: DWNN domain; I 43.9 71 0.0015 28.0 5.9 35 3-37 1-36 (74)
266 KOG1940|consensus 43.8 14 0.0003 40.1 1.9 46 688-738 158-207 (276)
267 PF13901 DUF4206: Domain of un 43.6 15 0.00033 37.9 2.2 48 302-365 144-196 (202)
268 KOG4323|consensus 43.4 24 0.00053 40.8 3.9 80 319-404 86-167 (464)
269 PRK08053 sulfur carrier protei 43.1 1.6E+02 0.0036 24.5 8.0 62 1-73 1-62 (66)
270 KOG1952|consensus 42.8 27 0.00059 42.9 4.3 50 686-735 189-245 (950)
271 PF08746 zf-RING-like: RING-li 42.8 23 0.00051 27.5 2.5 40 691-732 1-43 (43)
272 PF14569 zf-UDP: Zinc-binding 42.1 26 0.00056 30.9 2.9 48 688-738 9-63 (80)
273 KOG0804|consensus 41.2 13 0.00028 42.5 1.3 41 318-365 177-218 (493)
274 KOG1512|consensus 40.3 9.6 0.00021 41.1 0.1 39 327-365 275-315 (381)
275 PF10497 zf-4CXXC_R1: Zinc-fin 40.1 10 0.00022 35.3 0.2 28 338-366 37-69 (105)
276 KOG4628|consensus 39.3 18 0.00039 40.5 2.0 48 317-368 230-277 (348)
277 PRK06083 sulfur carrier protei 38.9 1.3E+02 0.0029 26.8 7.1 60 7-74 22-81 (84)
278 KOG2169|consensus 38.7 25 0.00055 42.6 3.3 73 684-758 302-375 (636)
279 KOG1632|consensus 38.3 17 0.00037 40.7 1.6 36 330-365 74-111 (345)
280 cd05992 PB1 The PB1 domain is 38.2 1E+02 0.0022 26.2 6.2 46 2-48 2-47 (81)
281 cd06408 PB1_NoxR The PB1 domai 37.5 1.1E+02 0.0024 27.6 6.2 45 3-49 3-48 (86)
282 PF10790 DUF2604: Protein of U 37.2 1.3E+02 0.0028 25.8 6.1 65 9-74 4-72 (76)
283 PHA02862 5L protein; Provision 36.8 31 0.00066 34.0 2.8 47 689-738 3-54 (156)
284 COG5100 NPL4 Nuclear pore prot 35.5 1.5E+02 0.0032 33.9 8.1 70 1-72 1-78 (571)
285 KOG1815|consensus 35.1 22 0.00047 41.2 1.9 37 686-722 68-105 (444)
286 KOG2042|consensus 34.8 70 0.0015 40.3 6.2 68 685-758 867-935 (943)
287 PF12773 DZR: Double zinc ribb 33.5 44 0.00096 26.2 2.9 8 358-365 29-36 (50)
288 cd01768 RA RA (Ras-associating 33.3 2.8E+02 0.0061 24.0 8.3 42 3-45 2-48 (87)
289 PRK07696 sulfur carrier protei 32.9 2.6E+02 0.0057 23.6 7.7 64 1-74 1-64 (67)
290 KOG2982|consensus 32.9 52 0.0011 36.5 4.1 51 21-71 357-415 (418)
291 PF07076 DUF1344: Protein of u 32.8 36 0.00078 28.7 2.3 48 147-219 5-52 (61)
292 PHA02825 LAP/PHD finger-like p 32.8 44 0.00096 33.4 3.3 50 686-738 6-60 (162)
293 KOG3612|consensus 32.6 62 0.0014 38.1 4.9 45 318-366 62-107 (588)
294 TIGR02958 sec_mycoba_snm4 secr 32.3 1.7E+02 0.0038 34.0 8.6 70 2-73 4-80 (452)
295 smart00266 CAD Domains present 32.2 2.1E+02 0.0046 25.1 7.0 52 3-57 3-56 (74)
296 COG5432 RAD18 RING-finger-cont 31.8 13 0.00029 40.1 -0.4 52 318-377 27-78 (391)
297 TIGR01687 moaD_arch MoaD famil 31.7 1.9E+02 0.0042 25.2 7.0 58 10-72 14-83 (88)
298 PF02017 CIDE-N: CIDE-N domain 31.2 2.1E+02 0.0047 25.3 7.0 64 3-73 5-71 (78)
299 PRK11840 bifunctional sulfur c 31.2 1.7E+02 0.0037 32.7 7.8 66 1-77 1-66 (326)
300 PF13771 zf-HC5HC2H: PHD-like 30.3 30 0.00064 30.5 1.6 28 318-347 38-67 (90)
301 PF00855 PWWP: PWWP domain; I 30.2 55 0.0012 28.3 3.2 59 130-195 1-59 (86)
302 PF08337 Plexin_cytopl: Plexin 30.1 88 0.0019 37.2 5.8 63 11-74 202-290 (539)
303 PF05641 Agenet: Agenet domain 29.2 57 0.0012 27.6 3.0 31 206-238 2-32 (68)
304 PF10367 Vps39_2: Vacuolar sor 29.0 44 0.00095 30.0 2.5 29 318-347 80-108 (109)
305 KOG3026|consensus 28.6 49 0.0011 35.0 2.9 30 128-157 89-118 (262)
306 COG3813 Uncharacterized protei 28.5 46 0.001 28.9 2.3 44 690-739 7-54 (84)
307 PRK07440 hypothetical protein; 28.5 3.1E+02 0.0067 23.4 7.4 59 8-74 9-67 (70)
308 PF07191 zinc-ribbons_6: zinc- 28.2 6 0.00013 34.1 -3.0 42 688-738 1-42 (70)
309 PRK14559 putative protein seri 28.2 52 0.0011 40.0 3.5 49 302-368 3-51 (645)
310 PF06844 DUF1244: Protein of u 27.8 35 0.00076 29.2 1.4 13 709-721 11-23 (68)
311 cd01615 CIDE_N CIDE_N domain, 26.9 3.1E+02 0.0066 24.4 7.2 51 3-56 5-57 (78)
312 PF11302 DUF3104: Protein of u 26.8 1.3E+02 0.0028 26.5 4.7 50 127-183 3-58 (75)
313 COG0143 MetG Methionyl-tRNA sy 26.8 36 0.00077 40.7 1.8 50 298-349 124-173 (558)
314 PF12436 USP7_ICP0_bdg: ICP0-b 26.5 98 0.0021 33.0 4.9 71 2-73 70-152 (249)
315 PF00301 Rubredoxin: Rubredoxi 26.4 36 0.00078 27.2 1.2 16 349-366 27-42 (47)
316 PRK10306 zinc/cadmium-binding 26.3 85 0.0018 32.8 4.2 25 553-583 127-151 (216)
317 KOG2114|consensus 26.3 21 0.00045 43.9 -0.2 43 318-371 842-885 (933)
318 cd06398 PB1_Joka2 The PB1 doma 25.1 2.4E+02 0.0053 25.5 6.5 45 2-47 2-51 (91)
319 cd01817 RGS12_RBD Ubiquitin do 25.1 2E+02 0.0043 25.2 5.6 44 5-49 4-47 (73)
320 cd06410 PB1_UP2 Uncharacterize 25.1 1.9E+02 0.0041 26.6 5.8 40 5-46 17-56 (97)
321 PF14353 CpXC: CpXC protein 25.0 50 0.0011 31.2 2.2 51 688-739 1-51 (128)
322 PF09567 RE_MamI: MamI restric 24.8 56 0.0012 34.9 2.6 37 168-229 132-168 (314)
323 PF12906 RINGv: RING-variant d 24.8 55 0.0012 25.8 2.0 40 691-732 1-47 (47)
324 PF10235 Cript: Microtubule-as 24.7 39 0.00084 30.7 1.2 38 688-738 44-81 (90)
325 KOG1844|consensus 24.2 41 0.00088 39.3 1.7 50 321-372 90-140 (508)
326 PF00788 RA: Ras association ( 23.8 2.3E+02 0.0049 24.5 6.0 42 3-45 5-52 (93)
327 KOG4248|consensus 23.7 62 0.0013 40.9 3.1 69 6-75 330-398 (1143)
328 cd06539 CIDE_N_A CIDE_N domain 23.5 2.7E+02 0.0059 24.7 6.2 64 3-71 5-70 (78)
329 cd01787 GRB7_RA RA (RAS-associ 23.5 2.8E+02 0.006 25.1 6.3 40 3-43 5-44 (85)
330 cd04482 RPA2_OBF_like RPA2_OBF 23.3 1.2E+02 0.0026 27.2 4.1 53 145-213 1-56 (91)
331 PF07975 C1_4: TFIIH C1-like d 23.2 81 0.0017 25.7 2.7 25 705-733 26-50 (51)
332 PTZ00380 microtubule-associate 23.0 1.3E+02 0.0028 28.9 4.4 61 11-72 41-104 (121)
333 cd06411 PB1_p51 The PB1 domain 22.9 1.4E+02 0.0031 26.4 4.4 36 12-48 8-43 (78)
334 PLN03106 TCP2 Protein TCP2; Pr 22.8 81 0.0018 35.3 3.4 27 527-553 58-86 (447)
335 COG2104 ThiS Sulfur transfer p 22.8 4.4E+02 0.0095 22.6 7.2 63 1-72 1-63 (68)
336 PF07591 PT-HINT: Pretoxin HIN 22.6 43 0.00092 32.1 1.2 71 129-212 13-84 (130)
337 KOG1428|consensus 22.3 14 0.0003 47.6 -2.7 38 336-374 3506-3549(3738)
338 KOG2561|consensus 22.2 52 0.0011 38.0 1.9 52 21-72 59-110 (568)
339 PF01157 Ribosomal_L21e: Ribos 22.1 59 0.0013 30.0 1.9 40 127-176 30-80 (99)
340 PF03107 C1_2: C1 domain; Int 21.6 76 0.0016 22.6 2.0 27 319-345 3-29 (30)
341 COG5194 APC11 Component of SCF 21.5 41 0.0009 29.8 0.8 56 302-367 22-79 (88)
342 cd05162 PWWP The PWWP domain, 21.5 1.2E+02 0.0027 26.5 3.8 66 130-199 1-66 (87)
343 PF14451 Ub-Mut7C: Mut7-C ubiq 21.4 3.2E+02 0.0069 24.3 6.3 52 10-71 22-74 (81)
344 PF10497 zf-4CXXC_R1: Zinc-fin 21.3 66 0.0014 29.9 2.1 29 707-735 37-70 (105)
345 KOG4185|consensus 21.1 31 0.00067 37.4 -0.1 44 689-735 208-265 (296)
346 PRK11130 moaD molybdopterin sy 21.0 4.8E+02 0.011 22.5 7.5 52 15-71 19-75 (81)
347 PF00130 C1_1: Phorbol esters/ 21.0 59 0.0013 25.7 1.5 29 319-347 14-44 (53)
348 PF13742 tRNA_anti_2: OB-fold 20.7 56 0.0012 29.8 1.5 62 132-193 11-99 (99)
349 KOG4250|consensus 20.7 1.8E+02 0.0038 35.7 5.9 43 9-52 323-365 (732)
350 KOG3391|consensus 20.3 94 0.002 30.3 2.9 30 49-78 112-141 (151)
351 PF15446 zf-PHD-like: PHD/FYVE 20.2 74 0.0016 32.2 2.3 21 330-350 123-143 (175)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=7.4e-55 Score=421.81 Aligned_cols=150 Identities=50% Similarity=0.909 Sum_probs=142.4
Q ss_pred CCCCCCCCceeecceecchhhhhhhcccCCCCCCCccCC----CCCeEEEEecCCccccCCCCCeEEEEccCCCCCCCCc
Q psy11302 416 SDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGRE----DVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNK 491 (764)
Q Consensus 416 ~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~----~~gA~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk 491 (764)
.++||+||||+|||+|+||+||+.+|||+++|+||++.+ ..||+|||+||||+||+|+||+|+|||+||+|.
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~---- 77 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM---- 77 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEccCCccC----
Confidence 478999999999999999999999999999999999988 789999999999999999999999999999885
Q ss_pred cccccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEEEEecCC
Q psy11302 492 RTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGS 571 (764)
Q Consensus 492 ~~~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~~~~~g~ 571 (764)
++.|.+||+|+++|+||++|| ++++|||||||++. +++|+|.+||||||||+|++||.++|+
T Consensus 78 -~~~~~~dQkl~~gNlAL~~S~---------------~~~~PVRViRg~~~--~~~~~p~~gyrYDGLY~V~~~w~e~g~ 139 (155)
T smart00466 78 -THGQPEDQKLERGNLALEASC---------------RKGIPVRVVRGMKG--YSKYAPGKGYIYDGLYRIVDYWREVGK 139 (155)
T ss_pred -CCCCccccEecchhHHHHHHH---------------hcCCceEEEccccc--cCCCCCCCeEEECcEEEEEEEEEecCC
Confidence 345889999999999999875 68999999999996 689999999999999999999999999
Q ss_pred CCcEEEEEEEeecCCC
Q psy11302 572 SDFIVWRFHLQRDDEA 587 (764)
Q Consensus 572 ~g~~v~~f~l~R~~~~ 587 (764)
+||.||||+|+|+++|
T Consensus 140 ~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 140 SGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCcEEEEEEEEeCCCC
Confidence 9999999999999997
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=2.3e-53 Score=414.00 Aligned_cols=150 Identities=55% Similarity=0.932 Sum_probs=124.7
Q ss_pred CCCCCCCceeecceecchhhhhhhcccCCCCCCCccCCCCC---eEEEEecCCccccCCCCCeEEEEccCCCCCCCCccc
Q psy11302 417 DHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVG---AFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRT 493 (764)
Q Consensus 417 ~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~~~g---A~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk~~ 493 (764)
++|||||||+|||||++|+||+++|+|+++|+||+|.+..| |+|||+||||+||+|+||+|+|||+||+|+.+|+
T Consensus 2 k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~~~~-- 79 (155)
T PF02182_consen 2 KRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLSGNK-- 79 (155)
T ss_dssp TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--TTT---
T ss_pred CcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCCEEEEEcCCCccccccc--
Confidence 78999999999999999999999999999999999999999 9999999999999999999999999999998776
Q ss_pred cccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCcc-ceeceEEEEEEEEEecCCC
Q psy11302 494 SVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEG-NRYDGIYKVVKYYPVKGSS 572 (764)
Q Consensus 494 ~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g-~rYDGLY~V~~~~~~~g~~ 572 (764)
|.+||+|+++|+||++|| ++++|||||||++. .+.|||..| |||||||+|++||.++|++
T Consensus 80 --~~~dQ~l~~gN~AL~~S~---------------~~~~PVRViR~~~~--~~~~ap~~g~yrYDGLY~V~~~w~~~g~~ 140 (155)
T PF02182_consen 80 --QPKDQKLERGNLALANSM---------------KTGNPVRVIRGYKL--KSSYAPKGGIYRYDGLYKVVKYWREKGKS 140 (155)
T ss_dssp --B-S---SSHHHHHHHHHS---------------GGS-EEEEEEEGGG--GGTTS-SSS-EEEEEEEEEEEEEEEE-TT
T ss_pred --ccccccccchhHHHHHHH---------------hcCCCeEEEeecCC--CCccCCcCCCEEeCcEEEEEEEEEEeCCC
Confidence 889999999999999875 68999999999997 466999999 9999999999999999999
Q ss_pred CcEEEEEEEeecCCC
Q psy11302 573 DFIVWRFHLQRDDEA 587 (764)
Q Consensus 573 g~~v~~f~l~R~~~~ 587 (764)
|+.||||+|+|+++|
T Consensus 141 G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 141 GFKVFKFKLVRLPGQ 155 (155)
T ss_dssp SSEEEEEEEEE-TSS
T ss_pred CcEEEEEEEEECCCC
Confidence 999999999999997
No 3
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=100.00 E-value=2.6e-38 Score=273.82 Aligned_cols=85 Identities=39% Similarity=0.691 Sum_probs=67.3
Q ss_pred eeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccccccccccccccEEecc
Q psy11302 135 YVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGN 214 (764)
Q Consensus 135 ~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~~~~~~~~ 214 (764)
||||||.++||||||+|++|+++..+ .+|++||||+||+|||+|+++|++++||||||++| +|++|+|||+||||
T Consensus 1 ~vD~~d~~~gAWfEa~i~~i~~~~~~----~~e~viYhIkyddype~gvv~~~~~~iRpRARt~l-~w~~L~VG~~VMvN 75 (85)
T PF12148_consen 1 LVDARDRNMGAWFEAQIVTITKKCMS----DDEDVIYHIKYDDYPENGVVEMRSKDIRPRARTIL-KWDELKVGQVVMVN 75 (85)
T ss_dssp EEEEE-TTT-EEEEEEEEEEEES-SS----SSTTEEEEEEETT-GGG-EEEEEGGGEEE---SBE--GGG--TT-EEEEE
T ss_pred CcccccCCCcceEEEEEEEeeccCCC----CCCCEEEEEEeccCCCcCceecccccccceeeEec-cHHhCCcccEEEEe
Confidence 79999999999999999999999753 45999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCCcccc
Q psy11302 215 YNAEEPRERG 224 (764)
Q Consensus 215 ~~~~~~~~~~ 224 (764)
||+|+|+|||
T Consensus 76 YN~d~P~erG 85 (85)
T PF12148_consen 76 YNVDEPKERG 85 (85)
T ss_dssp E-TTSTTS--
T ss_pred cCCCCcccCc
Confidence 9999999998
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.72 E-value=1.7e-17 Score=142.71 Aligned_cols=73 Identities=30% Similarity=0.607 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+++|+++.++|.+ ++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|||++|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~-~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSE-KESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999974
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.69 E-value=5.4e-17 Score=141.38 Aligned_cols=75 Identities=41% Similarity=0.777 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCE-EEEE-EcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSK-NCVL-VLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~-~~l~-v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|++ +.++ +.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|||+++++|||++|+.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~-~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSR-LTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCC-cCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 999999999997 5885 676 99999999999999999999999999999999999999999999999999998753
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.68 E-value=1.4e-16 Score=137.16 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+. ++++++|++ ++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++|||++|+.+
T Consensus 1 mqi~vk~~--~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTG-QETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECC-cCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 99999994 789999997 99999999999999999999999999999999999999999999999999999764
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.67 E-value=2.4e-16 Score=135.89 Aligned_cols=75 Identities=25% Similarity=0.438 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.+++.+ ++||++||++|++..|+|+++|||+|+|++|+|+.+|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEP-DNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999998653
No 8
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.64 E-value=5.5e-16 Score=142.00 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||++.|+++.++|.+ ++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++|||++++.+
T Consensus 28 M~I~Vk~l~G~~~~leV~~-~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSP-FETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999998754
No 9
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=1.5e-15 Score=131.21 Aligned_cols=74 Identities=24% Similarity=0.465 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCC--CCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDV--PVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gi--p~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..|+ |+++|+|+|+|++|+|+.+|++|+|++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~-~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDP-DDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999998 99999999999999999 99999999999999999999999999999999999754
No 10
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.61 E-value=1.4e-15 Score=130.95 Aligned_cols=71 Identities=21% Similarity=0.114 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+||++.|+.+.+++.+ ++||++||++|++.+|+|+++|||+|+|++|+|+.+|++|||++|++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~-~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNP-DDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999999999997 9999999999999999999999999999999999999999999999999964
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.61 E-value=1.6e-15 Score=130.56 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=70.3
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+||++.|+++++++++ ++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQL-TQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECC-cChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 79999999999999997 99999999999999999999999999999999999999999999999999998753
No 12
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.61 E-value=2.7e-15 Score=128.78 Aligned_cols=75 Identities=25% Similarity=0.479 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.+++.+ +.||.+||++|++..|+|++.|||+|+|+.|.|+.+|++|+|++|++|||+++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~-~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEP-TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECC-CCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999998643
No 13
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.61 E-value=2.2e-15 Score=129.35 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.+++.+ ++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|++|++|||++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~-~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECC-cCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999998754
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.59 E-value=3.2e-15 Score=130.24 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||++.|+.+.+++++ ++||++||++|++..++++++|||+|+|++|+|+ +|++|||++|++|+|+..+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~ 75 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPP-DETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEA 75 (78)
T ss_pred eEEEEEECCCCEEEEEECC-cCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence 8999999999999999997 9999999999999999999999999999999999 999999999999999987643
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.58 E-value=3e-15 Score=127.79 Aligned_cols=69 Identities=26% Similarity=0.386 Sum_probs=67.0
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
++||++.|+++.+++++ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~-~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSS-KDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECC-cChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 47899999999999997 9999999999999999999999999999999999999999999999999997
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.58 E-value=3.2e-15 Score=127.22 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=68.0
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+||+++|+++.+++++ ++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+|++|++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDP-DTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECC-CChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999997 99999999999999999999999999999999999999999999999999875
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.57 E-value=9.1e-15 Score=124.22 Aligned_cols=72 Identities=29% Similarity=0.566 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..|+|++.|+|+|+|++|+|+.+|++|+|++|++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEE-EITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999874
No 18
>KOG0005|consensus
Probab=99.56 E-value=2.6e-15 Score=120.75 Aligned_cols=70 Identities=27% Similarity=0.503 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
|.|+|||++|+++.|+++| +++|+.+|++|+++.||||.+|||||.||+|.|+.|.++|++.-|+++||+
T Consensus 1 m~iKvktLt~KeIeidIep-~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEP-TDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCc-chHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 8899999999999999998 999999999999999999999999999999999999999999999999985
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.54 E-value=1.6e-14 Score=123.35 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||++.|+ ..|++++ ++||.+||++|++..|+++++|+|+|+|++|+|+.+|++|||++|++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~-~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAE-DASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECC-CChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 5899997 99999999999999999999999999999999999999999999999999975
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.2e-14 Score=127.19 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEE--EECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRL--FYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrL--if~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||++.|+++.+++++ +.||.+||++|++..|+|+++||| +|+|++|.|+.+|++|||++|++|+|+++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~-~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRD-SMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCC-CCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7999999999999999997 999999999999999999999999 999999999999999999999999999974
No 21
>KOG0003|consensus
Probab=99.54 E-value=8.2e-16 Score=137.40 Aligned_cols=76 Identities=30% Similarity=0.521 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|||+++.|++.+++|+| ++||..||.+|+...|+|+++|+|+|+|++|+|+.||++|||+..||||++.|+.++
T Consensus 1 ~~~~~~~~~GKT~~le~Ep-S~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEP-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecc-cchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999998 999999999999999999999999999999999999999999999999999998776
No 22
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=6.2e-14 Score=155.01 Aligned_cols=76 Identities=24% Similarity=0.427 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcC---CCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLD---VPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~g---ip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+++.|+|++ ++||.+||++|++..| +++++|||||+||+|+|+++|++|+|+++++|++|++.++.
T Consensus 1 MkItVKtl~g~~~~IeV~~-~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEP-DETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCC-cChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 9999999999999999997 9999999999999998 99999999999999999999999999999999999987654
No 23
>KOG0004|consensus
Probab=99.50 E-value=1.7e-14 Score=138.06 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=75.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNY 80 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~~~ 80 (764)
|+|||+++.++++.++|++ ++||..+|.+|+...|||+++|||||+|++|+|+.+|+||+|+..++|||++++.++...
T Consensus 1 m~ifVk~l~~kti~~eve~-~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kk 79 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEA-NDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKK 79 (156)
T ss_pred Cccchhhccccceeeeecc-cccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCccc
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999998776543
No 24
>KOG1244|consensus
Probab=99.49 E-value=6.4e-15 Score=151.03 Aligned_cols=85 Identities=31% Similarity=0.772 Sum_probs=77.0
Q ss_pred ccccCcccCCCCCcccccCCCCCCCCcCCc-------CCccCCCcc-CccCCCCCCCCCcEEEecCCCcccccccCCCCC
Q psy11302 280 ERTAEDEDHMSTEPKTLRQIVPECTTCNDV-------ETKHCKDCG-CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLE 351 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~r~~~~~C~~C~~~-------~~~~c~~c~-C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~ 351 (764)
+++|...++.+.+..- |..+|.|.++..+ ..|+|.+|+ |.+|+..++++++||||.||++||||||.||+.
T Consensus 238 kkt~~peelvscsdcg-rsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~ 316 (336)
T KOG1244|consen 238 KKTGMPEELVSCSDCG-RSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMV 316 (336)
T ss_pred cccCCchhhcchhhcC-CCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcC
Confidence 4666655677777777 9999999998865 899999999 999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCcC
Q psy11302 352 SVPEDDEWFCPSCKR 366 (764)
Q Consensus 352 ~~P~~g~W~C~~C~~ 366 (764)
+.| +|.|.|..|..
T Consensus 317 epp-egswsc~KOG~ 330 (336)
T KOG1244|consen 317 EPP-EGSWSCHLCLE 330 (336)
T ss_pred CCC-CCchhHHHHHH
Confidence 999 99999999983
No 25
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.49 E-value=6.6e-14 Score=118.25 Aligned_cols=68 Identities=32% Similarity=0.585 Sum_probs=66.0
Q ss_pred EeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 6 RSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 6 Ktl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+++|+.+.++|.+ ++||.+||++|++..++|++.|+|+|+|++|+|+.+|++|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~-~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDP-DDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEET-TSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECC-CCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 78999999999998 999999999999999999999999999999999999999999999999999875
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.49 E-value=5e-14 Score=122.60 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=63.7
Q ss_pred CEEEEEeCCCCEEEEEE--cCCCCcHHHHHHHHHhhcC--CCCCCeEEEECCeeCCCCcCccccC--cCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLV--LSKRTLISDMKTQIENTLD--VPVDKQRLFYKGKQLEDEYMLFDYN--VNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v--~~~~~TV~~LK~~I~~~~g--ip~~~QrLif~GK~L~D~~tL~dy~--I~~g~tI~Lvv 72 (764)
|.|+||+++++.+.+++ ++ ++||.+||++|++..+ .++++|||||+||+|+|+.||++|. ++++.+||||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~-~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFL-NWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCC-cChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 57999999999955554 76 9999999999999874 5589999999999999999999996 99999999985
No 27
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.47 E-value=1e-13 Score=118.62 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=64.7
Q ss_pred EEEEeC-CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCC-cCccccCcCCCCEEEEE
Q psy11302 3 VKIRSL-DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDE-YMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 3 I~VKtl-~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~-~tL~dy~I~~g~tI~Lv 71 (764)
|+||+. .|+++.+++++ ++||++||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDP-DLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECC-cCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 99999999998 9999999999999999999999999999999987 68999999999999984
No 28
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.41 E-value=4.7e-13 Score=115.95 Aligned_cols=68 Identities=26% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
++|+++.|++++ ++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||++++.+
T Consensus 5 l~g~~~~l~v~~-~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQL-SDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECC-CCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 578999999997 99999999999999999999999999999999999999999999999999998755
No 29
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.41 E-value=5.8e-13 Score=113.04 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+||+. |+.+.+++++ ++||.+||++|++.+|+|+++|||+|+|+.|.|+.+|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~-~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISS-QATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECC-CCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999997 9999999997 9999999999999999999999999999999999999999999999999984
No 30
>KOG0010|consensus
Probab=99.40 E-value=6.6e-13 Score=147.24 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
++|+|||.++ ++.|.|.. +.||.+||++|+..+++++++|+|||.||+|+|+.||..|||++|.|||||++....+
T Consensus 16 irV~Vkt~~d-k~~~~V~~-~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVAS-DSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEeccc-chHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 4699999988 78999997 9999999999999999999999999999999999999999999999999999875543
No 31
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.39 E-value=1.5e-12 Score=115.77 Aligned_cols=75 Identities=15% Similarity=0.294 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+|++.+|+.+.+.|.+ ++|+..||+++++..|+|+++|||+|+|+.|+++.|+++|+|++||+|++++++.+
T Consensus 12 i~I~v~~~~g~~~~~~v~~-~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKR-STPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcC-CCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 7899999999999999997 99999999999999999999999999999999999999999999999999998754
No 32
>KOG0011|consensus
Probab=99.36 E-value=3e-12 Score=135.80 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcC--CCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLD--VPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~g--ip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+|||++++.++|++.| ++||.++|.+|+...| .|+++|+|||+||+|.|+.|+.+|+|+++++|.+|+...+
T Consensus 1 m~lt~KtL~q~~F~iev~P-e~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKP-EDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCc-chhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 8999999999999999998 9999999999999999 9999999999999999999999999999999999998765
No 33
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.33 E-value=1.1e-12 Score=112.72 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=52.2
Q ss_pred EEcCCCCcHHHHHHHHHhhc--CCC-CCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 16 LVLSKRTLISDMKTQIENTL--DVP-VDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 16 ~v~~~~~TV~~LK~~I~~~~--gip-~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
+|+|.++||.+||++|++++ +++ +++|||||+||+|+|++||++|+|++|++|||+.
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 45666899999999999996 474 9999999999999999999999999999999986
No 34
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.32 E-value=4e-12 Score=109.77 Aligned_cols=70 Identities=27% Similarity=0.311 Sum_probs=65.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE---CCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY---KGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif---~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|.||.- |+++.|+|++ ++||++||++|++..|+|+++|+|+| +|++|.|+.+|++|+|++|++|+||-
T Consensus 1 ~~i~vk~~-g~~~~v~v~~-~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWG-GQEYSVTTLS-EDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEEC-CEEEEEEECC-CCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 67889874 8899999998 99999999999999999999999996 99999999999999999999999983
No 35
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.29 E-value=7.2e-12 Score=103.31 Aligned_cols=64 Identities=34% Similarity=0.590 Sum_probs=61.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLND 66 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~ 66 (764)
|+|+||+.+ +.+.+++.+ ++||++||++|++.+|+|++.|+|+|+|+.|.|+.+|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~-~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKP-SDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECC-CCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 789999997 9999999999999999999999999999999999999999999875
No 36
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.27 E-value=6.6e-12 Score=115.12 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=66.3
Q ss_pred EEEEEeCCCCEE-EEEEcCCCCcHHHHHHHHHhhc-----CCC--CCCeEEEECCeeCCCCcCccccC------cCCCCE
Q psy11302 2 YVKIRSLDGSKN-CVLVLSKRTLISDMKTQIENTL-----DVP--VDKQRLFYKGKQLEDEYMLFDYN------VNLNDV 67 (764)
Q Consensus 2 qI~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I~~~~-----gip--~~~QrLif~GK~L~D~~tL~dy~------I~~g~t 67 (764)
-|++|..+|..+ .+.+.+ ++||++||++|++.. ++| +++|||||+||+|+|++||++|+ +....|
T Consensus 6 e~kfrl~dg~digp~~~~~-sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPA-ATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEccCCCccCccccCh-hhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 588899999777 777786 999999999999555 455 99999999999999999999999 777799
Q ss_pred EEEEEeecCCCC
Q psy11302 68 IQLMIKADIDKN 79 (764)
Q Consensus 68 I~Lvvr~~~~~~ 79 (764)
+||++|.+....
T Consensus 85 mHvvlr~~~~~~ 96 (113)
T cd01814 85 MHVVVQPPLADK 96 (113)
T ss_pred EEEEecCCCCCc
Confidence 999998765443
No 37
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.12 E-value=1.3e-10 Score=100.70 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=59.8
Q ss_pred EeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCC-CCcCccccCcC-CCCEEEEEE
Q psy11302 6 RSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLE-DEYMLFDYNVN-LNDVIQLMI 72 (764)
Q Consensus 6 Ktl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~-D~~tL~dy~I~-~g~tI~Lvv 72 (764)
|...|.++.++|.+ ++||++||++|++.+|+|+++||| |+|+.|. |+.+|++|+|+ +|+++||.+
T Consensus 8 ~~~~~~t~~l~v~~-~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRP-DMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECC-CCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 55678899999997 999999999999999999999999 9999995 77999999998 889999975
No 38
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.04 E-value=5.6e-10 Score=93.25 Aligned_cols=68 Identities=28% Similarity=0.518 Sum_probs=64.6
Q ss_pred EEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 4 KIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 4 ~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.||..+|+.+.+.+.+ ++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~-~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSP-DDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECC-CChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 3788899999999997 9999999999999999999999999999999999999999999999999875
No 39
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.00 E-value=2.2e-10 Score=88.28 Aligned_cols=42 Identities=45% Similarity=1.039 Sum_probs=32.6
Q ss_pred cccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 691 CIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
|+||+++|.+||+++|||+||..||.++++........||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998754322459987
No 40
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.99 E-value=1.2e-09 Score=93.25 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC-CCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPV-DKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~-~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+|++.+|+.+.+.|.+ ++++..|++.+++..++++ +.++|+|.|+.|.++.|+++++|++||+|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~-~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKP-TTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEET-TSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 7899999999999999997 9999999999999999999 999999999999999999999999999999975
No 41
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=8.3e-10 Score=91.54 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=55.6
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHH
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILST 755 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~ 755 (764)
+|.|+||+++|.+||.++|||+||+.||..|++... . ||.|+..+... ++..|..|++.|+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~-~---cP~~~~~~~~~--~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG-T---DPVTGQPLTHE--DLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC-C---CCCCcCCCChh--hceeCHHHHHHHHh
Confidence 478999999999999999999999999999998743 3 99999999765 78999999998875
No 42
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.92 E-value=2e-09 Score=96.28 Aligned_cols=63 Identities=27% Similarity=0.260 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCC-CCcCccccCcCCCCEEEEEEeec
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLE-DEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~-D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
...++|.+ .+||.+||.+|++.++++|.+|+|+|.|+.|. |..||++|||..+++|.|.+..|
T Consensus 16 ~~~L~V~~-~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSA-NQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCc-cccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 45788897 99999999999999999999999999999995 47899999999999999998643
No 43
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.88 E-value=1.6e-09 Score=93.27 Aligned_cols=67 Identities=27% Similarity=0.500 Sum_probs=55.5
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
-+.|.|+|+.++|.+||.++|||+|++.||+.|+...... ||.|+..+... .+.+|..|++.|+.|.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~---~P~t~~~l~~~--~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGT---DPFTRQPLSES--DLIPNRALKSAIEEWC 68 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB----TTT-SB-SGG--GSEE-HHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCC---CCCCCCcCCcc--cceECHHHHHHHHHHH
Confidence 3689999999999999999999999999999999985555 99999999886 7999999999999875
No 44
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.4e-09 Score=120.75 Aligned_cols=71 Identities=30% Similarity=0.682 Sum_probs=62.6
Q ss_pred HHHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 680 EVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..+..++..+.|+||++++..|++++|||+||..||..++.... . ||.|+..+... .+..|..|.+|++.|
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~-~---CP~Cr~~~~~~--~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP-K---CPLCRAEDQES--KLRSNWLVSEIVESF 88 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC-C---CCCCCCccccc--cCccchHHHHHHHHH
Confidence 34566889999999999999999999999999999999998654 3 99999998865 689999999999866
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.84 E-value=1.1e-09 Score=90.62 Aligned_cols=63 Identities=27% Similarity=0.713 Sum_probs=36.9
Q ss_pred HhhhcccccccccccccCcee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHH
Q psy11302 683 EHIQEKFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSIL 753 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lI 753 (764)
+++++.+.|++|.++|.+||+ ..|.|+||..|+...+.. . ||.|..+.-.. +++.|++|.+||
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~---CPvC~~Paw~q--D~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---E---CPVCHTPAWIQ--DIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B----SSS--B-S-S--S----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---C---CCCcCChHHHH--HHHhhhhhhccC
Confidence 467888999999999999997 589999999999775543 2 99999988765 799999999886
No 46
>KOG0287|consensus
Probab=98.78 E-value=3e-09 Score=112.78 Aligned_cols=69 Identities=29% Similarity=0.693 Sum_probs=61.8
Q ss_pred HHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+..+...+.|-||.++|..|+.|||+|+||..||...+..+.. ||.|+..+... .++.|+.|.+||..|
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~----CP~C~~~~~Es--~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQ----CPTCCVTVTES--DLRNNRILDEIVKSL 85 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCC----CCceecccchh--hhhhhhHHHHHHHHH
Confidence 4456678899999999999999999999999999999988765 99999999987 689999999998765
No 47
>KOG0825|consensus
Probab=98.77 E-value=2.4e-09 Score=122.84 Aligned_cols=50 Identities=36% Similarity=1.112 Sum_probs=47.6
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCc-ccccccCCCCCCCCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHY-YHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~-~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+.|.|.+|...+..+.||+||.|+.+ ||+|||+|+|.++| -+.|||++|.
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP-~~eWYC~NC~ 264 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESP-VNEWYCTNCS 264 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCccccccc-ccceecCcch
Confidence 56779999999999999999999999 99999999999999 9999999996
No 48
>KOG0001|consensus
Probab=98.77 E-value=3.9e-08 Score=81.77 Aligned_cols=73 Identities=32% Similarity=0.527 Sum_probs=69.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
+++|+++.|+.+.+.+.+ ..+|..+|.+|+...++++++|+|+|.|+.|+|+.+|.+|+|..+++++|+.++.
T Consensus 1 ~~~~~~~~gk~~~~~~~~-~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSP-SDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecC-CCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 378899999999999997 9999999999999999999999999999999999999999999999999998764
No 49
>KOG1512|consensus
Probab=98.73 E-value=2.9e-09 Score=110.52 Aligned_cols=53 Identities=30% Similarity=0.887 Sum_probs=49.9
Q ss_pred CCccCCCcc-CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCc-cCc
Q psy11302 310 ETKHCKDCG-CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCP-SCK 365 (764)
Q Consensus 310 ~~~~c~~c~-C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~-~C~ 365 (764)
..|.|.+|. |.+|++....++++|||.||++||.+|.+ |..+| .|.|.|. .|.
T Consensus 307 Y~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP-~G~WICD~~C~ 361 (381)
T KOG1512|consen 307 YFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLP-RGEWICDMRCR 361 (381)
T ss_pred cchhhcccHhhhccCCcccchheeccccccCCCCccccc--ccccc-CccchhhhHHH
Confidence 679999999 99999999999999999999999999999 99999 9999998 465
No 50
>KOG4248|consensus
Probab=98.70 E-value=3.3e-08 Score=117.43 Aligned_cols=75 Identities=28% Similarity=0.540 Sum_probs=70.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
.|+|||+|.++.+|.+.. .+||.+||.+|.+..+|+.+.|||||+|++|.|++++.+|+| +|.+|||+-|.++..
T Consensus 4 ~v~vktld~r~~t~~ig~-q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~ 78 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGA-QMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQT 78 (1143)
T ss_pred ceeeeecccceeEEEech-HHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCc
Confidence 478999999999999997 999999999999999999999999999999999999999999 999999999965543
No 51
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.65 E-value=1.3e-08 Score=102.20 Aligned_cols=55 Identities=25% Similarity=0.646 Sum_probs=45.0
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcC------------CCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIES------------DACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~------------~~~~~CP~CR~~i~~~ 739 (764)
+.+.+.|+||++.+.+|+.|+|||.||..||..|+.... .....||.||..+...
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 346799999999999999999999999999999986321 0113599999998764
No 52
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.63 E-value=2.1e-07 Score=86.58 Aligned_cols=75 Identities=25% Similarity=0.354 Sum_probs=57.9
Q ss_pred EEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhc-------CCCCCCeEEEECCeeCCCCcCccccCcCCCC------E
Q psy11302 2 YVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTL-------DVPVDKQRLFYKGKQLEDEYMLFDYNVNLND------V 67 (764)
Q Consensus 2 qI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~-------gip~~~QrLif~GK~L~D~~tL~dy~I~~g~------t 67 (764)
.|+++..+|+ ...+.+++ ++||.+||+.|.... -..++.+||||.||+|+|+.||.++.+..|+ +
T Consensus 4 ~lkf~l~~G~d~~~~~~~~-~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDP-STTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEETTS-EEEEEEE-T-TSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEeCCCcccccccCc-cChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 4677888999 77999997 999999999998754 2457889999999999999999999998777 6
Q ss_pred EEEEEeecCC
Q psy11302 68 IQLMIKADID 77 (764)
Q Consensus 68 I~Lvvr~~~~ 77 (764)
+||++|....
T Consensus 83 mHlvvrp~~~ 92 (111)
T PF13881_consen 83 MHLVVRPNAP 92 (111)
T ss_dssp EEEEE-SSSS
T ss_pred EEEEecCCCC
Confidence 8999876543
No 53
>KOG0823|consensus
Probab=98.56 E-value=3.4e-08 Score=101.02 Aligned_cols=53 Identities=30% Similarity=0.733 Sum_probs=46.6
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
-..|.|.||++...+||.|.|||-||+.||.+|+..+... +.||+|+..+...
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~-~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNS-KECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCC-eeCCccccccccc
Confidence 3579999999999999999999999999999999987643 5599999888764
No 54
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.55 E-value=1.6e-08 Score=80.64 Aligned_cols=47 Identities=32% Similarity=1.135 Sum_probs=41.8
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCC--CCCCCCCCCCccCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLE--SVPEDDEWFCPSCK 365 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~--~~P~~g~W~C~~C~ 365 (764)
.|.+|++..+.+.||.||.|+++||+.|+.|++. .++ .+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~-~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP-SGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH-SSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCC-CCcEECcCCc
Confidence 3889999888999999999999999999999988 455 5699999997
No 55
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.55 E-value=2.7e-07 Score=81.65 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=58.0
Q ss_pred EEEEEeCC-CCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEE-EECCe-----eC-CCCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLD-GSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRL-FYKGK-----QL-EDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~-Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrL-if~GK-----~L-~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.|+|+... .......+.+ ..||.+||++|+..+|++|+.||| +|.|+ .| +|+.+|++|++++|.+||++-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~-~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSR-GLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCC-CCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666543 3333555776 999999999999999999999999 58998 56 778899999999999999984
No 56
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.50 E-value=6.6e-08 Score=73.11 Aligned_cols=38 Identities=32% Similarity=1.015 Sum_probs=32.4
Q ss_pred cccccccccCc-eecCCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 691 CIICQELVYKP-ITLDCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~P-vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
|+||++.+.+| +.++|||.||..|+.++++.+ .. ||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~-~~---CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN-PK---CPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT-SB----TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc-CC---CcCC
Confidence 89999999999 578999999999999999884 44 9987
No 57
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.49 E-value=6.4e-08 Score=100.98 Aligned_cols=68 Identities=25% Similarity=0.570 Sum_probs=57.9
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..|...+.|-||.+.+..|+.|+|||+||..||.+.+..+.+ ||.||.+.... -++-+..+..+++.|
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~----CP~Cr~~~~es--rlr~~s~~~ei~es~ 87 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF----CPVCREDPCES--RLRGSSGSREINESH 87 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCC----CccccccHHhh--hcccchhHHHHHHhh
Confidence 345567899999999999999999999999999999999888 99999998876 366777777776654
No 58
>KOG0317|consensus
Probab=98.46 E-value=7.8e-08 Score=101.02 Aligned_cols=50 Identities=28% Similarity=0.699 Sum_probs=45.5
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+....|.+|++-..+|..|||||.||++||..|.....- ||.||..+...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e----CPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE----CPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC----CCcccccCCCc
Confidence 567899999999999999999999999999999987765 99999988765
No 59
>KOG0311|consensus
Probab=98.46 E-value=4.3e-08 Score=105.12 Aligned_cols=74 Identities=28% Similarity=0.762 Sum_probs=65.8
Q ss_pred HHhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCC
Q psy11302 682 LEHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPG 759 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg 759 (764)
+..+..++.|+||++++...+++ .|+|.||..||...++..... ||.||+.+..+. .++....+..||..+||+
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~e---cptcRk~l~Skr-sLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNE---CPTCRKKLVSKR-SLRIDPNFDALISKIYPS 111 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCC---CchHHhhccccc-cCCCCccHHHHHHHHhcc
Confidence 44567899999999999999988 599999999999999998877 999999997654 788888888999999987
No 60
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.45 E-value=1.1e-07 Score=75.77 Aligned_cols=47 Identities=36% Similarity=0.802 Sum_probs=39.5
Q ss_pred cccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 687 EKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
+++.|.||++...+++.++|||. ||..|+.++++.... ||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~----CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKK----CPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSB----BTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCC----CCcCChhhc
Confidence 35789999999999999999999 999999999984433 999999875
No 61
>KOG0320|consensus
Probab=98.43 E-value=9.6e-08 Score=93.97 Aligned_cols=49 Identities=37% Similarity=0.938 Sum_probs=43.0
Q ss_pred cccccccccccccC--ceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYK--PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~--Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.||||++-+.+ |+.|.|||.||+.||+.+++.... ||.|++.|..+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~----CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNK----CPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCC----CCCcccccchh
Confidence 45899999998875 677999999999999999998875 99999988765
No 62
>KOG4299|consensus
Probab=98.41 E-value=7.6e-08 Score=109.93 Aligned_cols=50 Identities=42% Similarity=1.067 Sum_probs=44.1
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCC--CCCCCCCCCCCccCcC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPL--ESVPEDDEWFCPSCKR 366 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL--~~~P~~g~W~C~~C~~ 366 (764)
+.+|..|++.+.-..+|+||.|+++||++||.||| +.+| .|.|||+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP-~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIP-PGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCC-CCccccCCCee
Confidence 34699999877667789999999999999999995 5899 99999999984
No 63
>PLN02560 enoyl-CoA reductase
Probab=98.41 E-value=5.9e-07 Score=97.66 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=62.1
Q ss_pred CEEEEEeCCCCEE---EEEEcCCCCcHHHHHHHHHhhcCC-CCCCeEEEEC---C----eeCCCCcCccccCcCCCCEEE
Q psy11302 1 MYVKIRSLDGSKN---CVLVLSKRTLISDMKTQIENTLDV-PVDKQRLFYK---G----KQLEDEYMLFDYNVNLNDVIQ 69 (764)
Q Consensus 1 MqI~VKtl~Gk~~---~l~v~~~~~TV~~LK~~I~~~~gi-p~~~QrLif~---G----K~L~D~~tL~dy~I~~g~tI~ 69 (764)
|+|+|+..+|+.+ +|++++ ++||++||++|+++.++ ++++|||++. | +.|.|+.+|+++||++|++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~-~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPD-SATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCC-CCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 8999999999887 799987 99999999999999986 8999999983 4 489999999999999999866
Q ss_pred E
Q psy11302 70 L 70 (764)
Q Consensus 70 L 70 (764)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 5
No 64
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.39 E-value=2.3e-07 Score=96.92 Aligned_cols=49 Identities=35% Similarity=0.762 Sum_probs=40.6
Q ss_pred hcccccccccccccCc--------eecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKP--------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P--------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.++..|+||++.+.++ +.++|+|.||..||.+|+.... + ||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-t---CPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-T---CPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-C---CCCCCCEeeE
Confidence 4578999999987653 5578999999999999998654 4 9999998764
No 65
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.36 E-value=2.5e-07 Score=70.35 Aligned_cols=39 Identities=44% Similarity=1.030 Sum_probs=34.7
Q ss_pred cccccccccCce-ecCCCCcchHhHHHHHHhh-cCCCcCCCccc
Q psy11302 691 CIICQELVYKPI-TLDCVHTFCHDCLKRAFKI-ESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~Pv-tt~CgH~FC~~CL~~~~~~-~~~~~~~CP~C 732 (764)
|+||++.+..|+ +++|||.||..|+.++++. .... ||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~---CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVK---CPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSB---TTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCcc---CCcC
Confidence 899999999999 8899999999999999994 3344 9987
No 66
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.36 E-value=1e-06 Score=81.00 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=62.8
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCc-------CCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKN-CVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNV-------NLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I-------~~g~tI~Lvv 72 (764)
|-+|++-...+++ .+++.+ ++||.+||++|+.....||+.|||+-.+.+|+|++||+|||+ +..++|-|.+
T Consensus 1 MdvFlmIrR~KTTiF~dake-s~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKE-STTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred CceEEEEEecceEEEeecCC-cccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence 5566655545555 667776 999999999999999999999999988899999999999999 7788999999
Q ss_pred ee
Q psy11302 73 KA 74 (764)
Q Consensus 73 r~ 74 (764)
|.
T Consensus 80 r~ 81 (119)
T cd01788 80 RS 81 (119)
T ss_pred ec
Confidence 85
No 67
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.36 E-value=1.9e-07 Score=72.38 Aligned_cols=40 Identities=40% Similarity=0.844 Sum_probs=33.9
Q ss_pred cccccccccc---CceecCCCCcchHhHHHHHHhhcCCCcCCCcccc
Q psy11302 690 LCIICQELVY---KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCR 733 (764)
Q Consensus 690 ~C~IC~e~l~---~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR 733 (764)
.|+||++.+. .++.++|+|.||..||..|++.+. . ||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~---CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-S---CPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B----TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-c---CCccC
Confidence 5999999885 456789999999999999999865 4 99997
No 68
>KOG2177|consensus
Probab=98.30 E-value=4.7e-07 Score=94.67 Aligned_cols=69 Identities=35% Similarity=0.766 Sum_probs=57.0
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
....+.+.+.|+||++.+..|++++|+|+||..|+..++. .... ||.||. ... ++..|..+.++++.+-
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~---Cp~cr~-~~~---~~~~n~~l~~~~~~~~ 74 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLS---CPVCRP-PSR---NLRPNVLLANLVERLR 74 (386)
T ss_pred hhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcC---CcccCC-chh---ccCccHHHHHHHHHHH
Confidence 3455778999999999999998899999999999999998 4444 999996 333 4678888888887653
No 69
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.28 E-value=4.6e-07 Score=87.65 Aligned_cols=30 Identities=43% Similarity=1.227 Sum_probs=27.0
Q ss_pred cccccccCCCCCCCCCCCCCCCccCcCCCcc
Q psy11302 340 YYHIWCLKPPLESVPEDDEWFCPSCKRDTSE 370 (764)
Q Consensus 340 ~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~ 370 (764)
+||++||+|||..+| +|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P-~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVP-EGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCC-CCCcCCCCCcCCCCC
Confidence 699999999999999 899999999965543
No 70
>KOG2660|consensus
Probab=98.27 E-value=4.2e-07 Score=97.25 Aligned_cols=75 Identities=28% Similarity=0.701 Sum_probs=65.6
Q ss_pred HhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCccccccccccc--CCCCccHHHHHHHHHhCCC
Q psy11302 683 EHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSC--LETHSNDALQSILSTLFPG 759 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~--~~~~vN~~L~~lIe~lfPg 759 (764)
..+....+|.+|..+|.++.|+ .|.|+||++||...+....+ ||.|...+...+ .++....+|+.|+-.|+||
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~----CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPg 85 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKY----CPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPG 85 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhcc----CCccceeccCccccccCCcchHHHHHHHHHcch
Confidence 4466788999999999999885 69999999999999998554 999999998764 3788999999999999999
Q ss_pred CC
Q psy11302 760 YS 761 (764)
Q Consensus 760 ~~ 761 (764)
..
T Consensus 86 l~ 87 (331)
T KOG2660|consen 86 LQ 87 (331)
T ss_pred HH
Confidence 65
No 71
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.25 E-value=5.5e-07 Score=69.79 Aligned_cols=39 Identities=41% Similarity=0.939 Sum_probs=23.5
Q ss_pred cccccccccC----ceecCCCCcchHhHHHHHHhhcCCCcCCCc
Q psy11302 691 CIICQELVYK----PITLDCVHTFCHDCLKRAFKIESDACNSCP 730 (764)
Q Consensus 691 C~IC~e~l~~----Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP 730 (764)
|+||.+ +.. |+.++|||+||..||.++++.+.....+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 999999999999999999986532223476
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.24 E-value=3.3e-06 Score=75.03 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=56.7
Q ss_pred EEEEEeCCC--CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC----C---eeC-CCCcCccccCcCCCCEEEEE
Q psy11302 2 YVKIRSLDG--SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK----G---KQL-EDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 2 qI~VKtl~G--k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~----G---K~L-~D~~tL~dy~I~~g~tI~Lv 71 (764)
.|+|..... ......+.. +.||.+||++|+..+|+|++.|+|.+. + ..| .|..+|.+|++++|.+||+.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~-~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPK-SITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEET-TSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCC-CCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567766544 477888887 999999999999999999999999986 1 223 56889999999999999987
Q ss_pred E
Q psy11302 72 I 72 (764)
Q Consensus 72 v 72 (764)
=
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 74
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=7e-07 Score=90.93 Aligned_cols=57 Identities=28% Similarity=0.711 Sum_probs=43.2
Q ss_pred HHhhhcccccccccccccC---------ceecCCCCcchHhHHHHHHhhcCC--CcCCCccccccccc
Q psy11302 682 LEHIQEKFLCIICQELVYK---------PITLDCVHTFCHDCLKRAFKIESD--ACNSCPYCRKEMNK 738 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~---------Pvtt~CgH~FC~~CL~~~~~~~~~--~~~~CP~CR~~i~~ 738 (764)
+-...++..|+||++.+.+ ++..+|+|.||..|+..|.+.+.. ....||.||..+..
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3445678999999998754 355699999999999999986421 12449999998763
No 75
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.24 E-value=8.6e-07 Score=67.23 Aligned_cols=44 Identities=36% Similarity=0.921 Sum_probs=37.3
Q ss_pred ccccccccccCceecC-CCCcchHhHHHHHHhhcCCCcCCCccccccc
Q psy11302 690 LCIICQELVYKPITLD-CVHTFCHDCLKRAFKIESDACNSCPYCRKEM 736 (764)
Q Consensus 690 ~C~IC~e~l~~Pvtt~-CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i 736 (764)
.|+||++.+..++.+. |||.||..|+..|+...... ||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~---Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNT---CPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCC---CCCCCCcC
Confidence 4999999998887765 99999999999999874444 99998753
No 76
>KOG4443|consensus
Probab=98.23 E-value=6e-07 Score=102.88 Aligned_cols=100 Identities=25% Similarity=0.624 Sum_probs=72.6
Q ss_pred cccccccchhhhhhhhcccCchhhhccccCcccCCCCCcccccCCCCCCCCcC-----CcCCccCCCcc-CccCCCCCCC
Q psy11302 255 ETRLENCKIKFVKELYKIESPKLLAERTAEDEDHMSTEPKTLRQIVPECTTCN-----DVETKHCKDCG-CSICAGKTSP 328 (764)
Q Consensus 255 ~~~l~~c~i~f~~e~~~iE~~~~l~~~~~~~~~~~~~~~~~~r~~~~~C~~C~-----~~~~~~c~~c~-C~vC~~~~~~ 328 (764)
.+.+..|.+.++-+-+.-+ ++|. ..+....- -..+++|-.=. --.-|.|..|+ |..|+...|+
T Consensus 12 ~~~~~~~~mc~l~~s~G~~-------~ag~---m~ac~~c~-~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~ 80 (694)
T KOG4443|consen 12 DKAIIVCLMCPLCGSSGKG-------RAGR---LLACSDCG-QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDP 80 (694)
T ss_pred chhhhhhhhhhhhcccccc-------ccCc---chhhhhhc-ccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCc
Confidence 4567778888876655555 3331 11111111 23344443311 12448999998 9999999999
Q ss_pred CCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 329 DKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 329 ~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
...++|+.||-+||.||..|++..+| .|.|+|+.|..
T Consensus 81 ~kf~~Ck~cDvsyh~yc~~P~~~~v~-sg~~~ckk~~~ 117 (694)
T KOG4443|consen 81 KKFLLCKRCDVSYHCYCQKPPNDKVP-SGPWLCKKCTR 117 (694)
T ss_pred ccccccccccccccccccCCcccccc-CcccccHHHHh
Confidence 99999999999999999999999999 99999999964
No 77
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.20 E-value=2.9e-06 Score=73.75 Aligned_cols=69 Identities=25% Similarity=0.257 Sum_probs=55.2
Q ss_pred EEEEEeCC-CCEEEEEEcCCCCcHHHHHHHHHhhcC-CCCCCeEE--EECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLD-GSKNCVLVLSKRTLISDMKTQIENTLD-VPVDKQRL--FYKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~-Gk~~~l~v~~~~~TV~~LK~~I~~~~g-ip~~~QrL--if~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
.|.++... .....+++++++.||.+||..|++..+ +++++||| .+.|+.|.|+.+|.+|||++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555554 333345555558999999999999976 58999998 48999999999999999999998875
No 78
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-06 Score=89.98 Aligned_cols=51 Identities=29% Similarity=0.633 Sum_probs=44.1
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHH-HHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKR-AFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~-~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+.++.|.||++.+..|..++|||.||..||.. |-..+... ||.||+....+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~---CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEF---CPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhcccc---Cchhhhhccch
Confidence 56899999999999999999999999999999 66655544 99999976654
No 79
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.06 E-value=3.2e-06 Score=61.78 Aligned_cols=39 Identities=41% Similarity=1.079 Sum_probs=34.4
Q ss_pred cccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 691 CIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
|+||++....++.++|+|.||..|+..|+...... ||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~---CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNT---CPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCC---CCCC
Confidence 78999999999999999999999999999844444 9987
No 80
>KOG4159|consensus
Probab=98.04 E-value=2.3e-06 Score=95.54 Aligned_cols=75 Identities=32% Similarity=0.774 Sum_probs=60.6
Q ss_pred hhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccccc--CCCC-ccHHHHHHHHHhCCCC
Q psy11302 684 HIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSC--LETH-SNDALQSILSTLFPGY 760 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~--~~~~-vN~~L~~lIe~lfPg~ 760 (764)
.+..+|.|.||...++.||+++|||+||..||.+.+..... ||.||..+.... .... .|+.+..+|..|++|.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~----cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETE----CPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCC----CcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34789999999999999999999999999999998874443 999999987531 0122 3777789999999987
Q ss_pred CC
Q psy11302 761 SS 762 (764)
Q Consensus 761 ~~ 762 (764)
..
T Consensus 156 ~~ 157 (398)
T KOG4159|consen 156 SS 157 (398)
T ss_pred hc
Confidence 54
No 81
>KOG0006|consensus
Probab=98.04 E-value=1.1e-05 Score=85.60 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=63.7
Q ss_pred CEEEEEeC---CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSL---DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl---~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+|+.- ....+.|+|.. +++|.+||+.++.+.|+|+++.++||.||.|.++.|+..+++..-+.+|+|.
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~-~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDS-DTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEec-CCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 77888765 23446899998 9999999999999999999999999999999999999999999999999983
No 82
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.03 E-value=1.8e-05 Score=62.20 Aligned_cols=67 Identities=33% Similarity=0.498 Sum_probs=61.3
Q ss_pred EEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 5 IRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 5 VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+..++....+.+.+ ..||.+||++|++++|++++.|+|+++|..+.+...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~-~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPS-GTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCC-CCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 445578888999886 9999999999999999999999999999999999998999999999999874
No 83
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.01 E-value=3.6e-06 Score=65.43 Aligned_cols=41 Identities=44% Similarity=0.873 Sum_probs=33.5
Q ss_pred ccccccccc---cCceecCCCCcchHhHHHHHHhhcCCCcCCCccccc
Q psy11302 690 LCIICQELV---YKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRK 734 (764)
Q Consensus 690 ~C~IC~e~l---~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~ 734 (764)
.|++|++.+ ..|+.|+|||+||..|+.... ..... ||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~---CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVK---CPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCC---CcCCCC
Confidence 489999988 357889999999999999988 33333 999984
No 84
>KOG2164|consensus
Probab=97.90 E-value=6.1e-06 Score=92.88 Aligned_cols=52 Identities=29% Similarity=0.712 Sum_probs=44.3
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcC-CCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~~ 739 (764)
...||||++...-|+.|.|||.||..||.+.+.... .....||+|+..+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 789999999999999999999999999999887652 2225599999988763
No 85
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.87 E-value=1.7e-05 Score=69.65 Aligned_cols=69 Identities=28% Similarity=0.412 Sum_probs=43.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC---CeeC--CCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK---GKQL--EDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~---GK~L--~D~~tL~dy~I~~g~tI~Lv 71 (764)
|-|.||+.+|- +.|++++ ++|+.+|+++|++.+++|...|.|+.+ ...| .++.+|+++||++||.|.|.
T Consensus 5 milRvrS~dG~-~Rie~~~-~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDGM-KRIEVSP-SSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSEE-EEEEE-T-TSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCCC-EEEEcCC-cccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 78999999885 6778887 999999999999999999999988643 2344 46889999999999998763
No 86
>KOG0383|consensus
Probab=97.84 E-value=9.9e-06 Score=95.64 Aligned_cols=67 Identities=31% Similarity=0.842 Sum_probs=52.5
Q ss_pred CCCCCCCCcCCc-CCccC--------CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 298 QIVPECTTCNDV-ETKHC--------KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 298 ~~~~~C~~C~~~-~~~~c--------~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
...|.|++|... ..+.+ +...|.+|+ +.+.+|+||.|+.+||++|++||+...| .++|.|+.|.+..
T Consensus 20 ~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~---~~g~~l~c~tC~~s~h~~cl~~pl~~~p-~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 20 EMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICA---DGGELLWCDTCPASFHASCLGPPLTPQP-NGEFICPRCFCPK 95 (696)
T ss_pred cCCccCcchhhcccccccccCCcchhhhhhhhhhc---CCCcEEEeccccHHHHHHccCCCCCcCC-ccceeeeeeccCC
Confidence 467889988732 22222 223499999 7799999999999999999999999999 6679999995433
No 87
>KOG0957|consensus
Probab=97.82 E-value=4.8e-06 Score=92.53 Aligned_cols=50 Identities=36% Similarity=0.993 Sum_probs=45.1
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCC---CCCCccCc
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDD---EWFCPSCK 365 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g---~W~C~~C~ 365 (764)
.-.|-+|++..+.+.++.||+|...||+.||+|||+.+|... -|.|..|.
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 345999999999999999999999999999999999999633 69999994
No 88
>KOG1245|consensus
Probab=97.70 E-value=6.5e-06 Score=104.12 Aligned_cols=50 Identities=40% Similarity=1.196 Sum_probs=46.8
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.-.|.+|..+.....|++||.|..+||++|+.|.+.++| .|+|+||.|+.
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~-~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVP-PGDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCC-cCCccCCccch
Confidence 334999999999999999999999999999999999999 99999999993
No 89
>KOG1973|consensus
Probab=97.67 E-value=1.5e-05 Score=85.53 Aligned_cols=42 Identities=38% Similarity=1.126 Sum_probs=36.7
Q ss_pred ccCccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 317 CGCSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
|.|. |. .-++|+-||. |+ .+||+.|.+ |...| .|.|||+.|.
T Consensus 222 C~Cn-qv---syg~Mi~CDn~~C~~eWFH~~CVG--L~~~P-kgkWyC~~C~ 266 (274)
T KOG1973|consen 222 CICN-QV---SYGKMIGCDNPGCPIEWFHFTCVG--LKTKP-KGKWYCPRCK 266 (274)
T ss_pred EEec-cc---ccccccccCCCCCCcceEEEeccc--cccCC-CCcccchhhh
Confidence 4555 44 5689999997 99 999999999 99999 9999999998
No 90
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=4.2e-05 Score=82.45 Aligned_cols=49 Identities=29% Similarity=0.614 Sum_probs=38.5
Q ss_pred cccccccccc-ccCce---e-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQEL-VYKPI---T-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~-l~~Pv---t-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+..||+|... ..+|- . .+|||+||.+|+...|...... ||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~---CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGS---CPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCC---CCCCCCccchh
Confidence 4689999983 33453 2 2799999999999998776655 99999988764
No 91
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.57 E-value=7.4e-05 Score=61.82 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=44.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
-|++|+.|||+...-|+||+|.|+++... --|.|.|.+..+.....+...+|||..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~-----------~~~~V~~~~~~~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGD-----------GKYLVRYLTESEPLKETVDWSDLRPHP 57 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCC-----------CEEEEEECCCCcccEEEEeHHHcccCC
Confidence 48999999999988999999999998763 249999987212224666788999965
No 92
>KOG0978|consensus
Probab=97.44 E-value=5.1e-05 Score=89.32 Aligned_cols=56 Identities=21% Similarity=0.671 Sum_probs=49.4
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
-+......+.|++|..-..+.|.+.|+|.||..|+.+.+..+... ||.|.+.|+..
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRK---CP~Cn~aFgan 691 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRK---CPKCNAAFGAN 691 (698)
T ss_pred HHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCC---CCCCCCCCCcc
Confidence 345566789999999988899999999999999999999988876 99999999875
No 93
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.40 E-value=9.1e-05 Score=63.96 Aligned_cols=40 Identities=38% Similarity=0.845 Sum_probs=32.1
Q ss_pred ccccccccccCc------------e-ecCCCCcchHhHHHHHHhhcCCCcCCCcccc
Q psy11302 690 LCIICQELVYKP------------I-TLDCVHTFCHDCLKRAFKIESDACNSCPYCR 733 (764)
Q Consensus 690 ~C~IC~e~l~~P------------v-tt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR 733 (764)
.|.||++.+..| + ..+|||.|...||.+|+..+. + ||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~---CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-T---CPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B----TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-c---CCCCC
Confidence 499999998433 3 348999999999999998776 4 99997
No 94
>KOG0824|consensus
Probab=97.31 E-value=0.00011 Score=78.07 Aligned_cols=49 Identities=33% Similarity=0.791 Sum_probs=44.4
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.-.|+||+....-|+.++|+|.||.-||+.+....... |++||.+|...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~---CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKT---CAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCC---CceecCCCCcc
Confidence 45799999999999999999999999999998877666 99999999875
No 95
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.27 E-value=0.00011 Score=73.58 Aligned_cols=60 Identities=30% Similarity=0.649 Sum_probs=49.1
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHH
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILS 754 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe 754 (764)
.|.|.||...+..||.+.|||.||..|..+.++.... |-.|-+...-. +-+...|+.||.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~----C~~Cgk~t~G~---f~V~~d~~kmL~ 255 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDE----CGVCGKATYGR---FWVVSDLQKMLN 255 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCc----ceecchhhccc---eeHHhhHHHHHh
Confidence 5899999999999999999999999999988877654 99998876543 455566666654
No 96
>KOG0802|consensus
Probab=97.27 E-value=0.00012 Score=85.85 Aligned_cols=49 Identities=37% Similarity=0.772 Sum_probs=43.0
Q ss_pred hcccccccccccccC-----ceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYK-----PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~-----Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.....|+||.+.+.. |..++|+|.||..|+..||+.+.. ||.||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt----CP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT----CPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc----CCcchhhhhc
Confidence 457899999999998 788999999999999999999765 9999995543
No 97
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.22 E-value=0.00024 Score=75.04 Aligned_cols=63 Identities=22% Similarity=0.532 Sum_probs=48.0
Q ss_pred cccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCccccc-ccccccCCCCccHHHHHHHHHh
Q psy11302 689 FLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRK-EMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 689 ~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~-~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+.|+.|..++.+|+.| -|+|.||..||..++-...+. ||.|-. ++-.. .+.+......-++.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~---CpnC~rkdvlld--~l~pD~dk~~EvE~~ 339 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFK---CPNCSRKDVLLD--GLTPDIDKKLEVEKA 339 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcccc---CCCcccccchhh--ccCccHHHHHHHHHH
Confidence 8899999999999998 599999999999999888887 999954 33322 345555444444433
No 98
>KOG0955|consensus
Probab=97.19 E-value=0.00018 Score=88.41 Aligned_cols=54 Identities=22% Similarity=0.719 Sum_probs=45.3
Q ss_pred CCccCccCCCCCCC--CCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCccc
Q psy11302 315 KDCGCSICAGKTSP--DKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEV 371 (764)
Q Consensus 315 ~~c~C~vC~~~~~~--~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~ 371 (764)
++-+|.+|..++-. ..+|+||.|+.++|+.|.+ ..-+| +|.|+|..|....+..
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ip-eg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIP-EGQWLCRRCLQSPQRP 273 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCC-CCcEeehhhccCcCcc
Confidence 45569999987755 7999999999999999999 55788 9999999999655544
No 99
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.09 E-value=0.00021 Score=74.36 Aligned_cols=36 Identities=33% Similarity=1.180 Sum_probs=32.7
Q ss_pred CCCCcEEEe--cCCC-cccccccCCCCCCCCCCCCCCCccCc
Q psy11302 327 SPDKLIVCE--ECQH-YYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 327 ~~~~ll~Cd--~C~~-~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.-++|+-|| .|.+ +||+.|.+ |...| .|.|||+.|.
T Consensus 230 SyGqMVaCDn~nCkrEWFH~~CVG--Lk~pP-KG~WYC~eCk 268 (271)
T COG5034 230 SYGQMVACDNANCKREWFHLECVG--LKEPP-KGKWYCPECK 268 (271)
T ss_pred ccccceecCCCCCchhheeccccc--cCCCC-CCcEeCHHhH
Confidence 357899999 5986 99999999 99999 9999999997
No 100
>KOG1813|consensus
Probab=96.98 E-value=0.00034 Score=74.24 Aligned_cols=60 Identities=27% Similarity=0.693 Sum_probs=48.2
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHH
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILS 754 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe 754 (764)
-|.|-||...++.||.+.|+|.||..|....++.... |+.|.+.+.-. +.+...|...|.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~----c~vC~~~t~g~---~~~akeL~~~L~ 300 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEK----CYVCSQQTHGS---FNVAKELLVSLK 300 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCc----ceecccccccc---cchHHHHHHHHH
Confidence 5789999999999999999999999999888876554 99998887654 455555544443
No 101
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.93 E-value=0.0046 Score=53.15 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=60.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC-----CeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK-----GKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~-----GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
+||+|+-..+...++.|.| ..+|..||++|....+++- +|||-|. -+.|.+..+|++|||=.+-.|-|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnP-y~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNP-YSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCC-cchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 5899999988889999998 9999999999999999965 9999994 2456899999999997666666664
No 102
>KOG1769|consensus
Probab=96.85 E-value=0.0077 Score=54.64 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=67.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
+|+|+.-++.+..+.|.. ++...-|+..-++..|++.+..|++|.|+.|.+.+|-++.+.++||.|.++..+.+
T Consensus 22 ~LKV~gqd~~~~~Fkikr-~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKR-HTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred EEEEecCCCCEEEEEeec-CChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeeccc
Confidence 567777678888899886 99999999999999999999999999999999999999999999999999975533
No 103
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00072 Score=73.48 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=40.6
Q ss_pred hcccccccccccccC-c------------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 686 QEKFLCIICQELVYK-P------------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~-P------------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
..+..|.||++.|.. | -.++|||.|-..||+-|...++. ||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT----CPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT----CPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC----CCcccCccc
Confidence 457889999997543 2 56899999999999999998876 999999954
No 104
>KOG4628|consensus
Probab=96.80 E-value=0.00066 Score=74.52 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=40.6
Q ss_pred cccccccccccCc---eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 689 FLCIICQELVYKP---ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 689 ~~C~IC~e~l~~P---vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..|.||+|.+..- +.|||.|.|-..|+..|+...... ||.|+.++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~---CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTF---CPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCcc---CCCCCCcCCCC
Confidence 5999999988853 448999999999999999977544 99999988653
No 105
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=96.76 E-value=0.0013 Score=55.92 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=35.3
Q ss_pred ccccceeeeeecc---cCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCc------ccccccccccCc
Q psy11302 130 YKVGDYVDAILET---EGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGS------STMKFDDIRPLP 195 (764)
Q Consensus 130 ykvg~~vD~~d~~---~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~------~~~~~~~ir~ra 195 (764)
||+|+.|.++=.. .||||.|.|+++... --|.|+|+++..++. ..+....|||.-
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~-----------~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~p 64 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGD-----------DKYLVEYDDLPDEDGESPPLKEWVDARRIRPCP 64 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT------------EEEEEETT-SS--------EEEEEGGGEEE--
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCC-----------cEEEEEECCcccccccccccEEEechheEECcC
Confidence 6899999997655 789999999998876 279999988876633 455667888863
No 106
>KOG1872|consensus
Probab=96.65 E-value=0.0028 Score=71.32 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=62.4
Q ss_pred EEEEeCCCCEEEEE-EcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 3 VKIRSLDGSKNCVL-VLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 3 I~VKtl~Gk~~~l~-v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|.||-. |+.+.++ ++. ++|+..||++|....|++|+.|++.+.|+.|.|+-.+....|++|.+|+||-..
T Consensus 6 v~VKW~-gk~y~v~~l~~-d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIVKWG-GKKYPVETLST-DETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred Eeeeec-CccccceeccC-CCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 566654 8888777 676 999999999999999999999999999999999988888999999999999643
No 107
>KOG0297|consensus
Probab=96.65 E-value=0.0011 Score=74.81 Aligned_cols=66 Identities=32% Similarity=0.725 Sum_probs=51.2
Q ss_pred hhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHH
Q psy11302 684 HIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILS 754 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe 754 (764)
.+.+.+.|++|..++.+|+.+ .|||.||..|+..|+..... ||.|+..+.... .+.....+...+.
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~----cp~~~~~~~~~~-~~~~~~~~~~~~~ 83 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQK----CPVCRQELTQAE-ELPVPRALRRELL 83 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhccCcC----Ccccccccchhh-ccCchHHHHHHHH
Confidence 367889999999999999995 99999999999999998443 999988876642 2333344444444
No 108
>KOG4495|consensus
Probab=96.56 E-value=0.0042 Score=55.72 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=47.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE-CC-eeCCCCcCccccCc
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY-KG-KQLEDEYMLFDYNV 62 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif-~G-K~L~D~~tL~dy~I 62 (764)
.|.||-. ..++.++..+ +.||-+||.+++....-|++.|||+. .. +.|+|++||+|+|.
T Consensus 4 f~~VrR~-kttif~da~e-s~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 4 FLRVRRH-KTTIFTDAKE-SSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeeeeec-ceeEEeecCc-cccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 3445543 2334667776 99999999999999999999999998 44 67799999999965
No 109
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0014 Score=69.65 Aligned_cols=49 Identities=29% Similarity=0.573 Sum_probs=40.1
Q ss_pred cccccccccccccC---ceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 687 EKFLCIICQELVYK---PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~---Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
....|.||++-+.+ -+.|||.|.|-..|+..|+..-... ||.||..++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~---CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNK---CPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhccc---CCccCCCCCC
Confidence 34679999997763 3568999999999999999865555 9999998763
No 110
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.51 E-value=0.0012 Score=54.32 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=29.8
Q ss_pred hcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcc
Q psy11302 686 QEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPY 731 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~ 731 (764)
.-.+.|||.+..|.+||.. .|+|+|.+..|..+++... ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~--~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNG--SKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS---EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcC--CCCCCC
Confidence 3568999999999999984 8999999999999994322 134997
No 111
>KOG4367|consensus
Probab=96.49 E-value=0.002 Score=71.14 Aligned_cols=36 Identities=28% Similarity=0.837 Sum_probs=32.1
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHh
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFK 720 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~ 720 (764)
+++++.|+||...+.+||.++|+|+.|..|....+.
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 368899999999999999999999999999876543
No 112
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.42 E-value=0.0026 Score=56.38 Aligned_cols=50 Identities=26% Similarity=0.586 Sum_probs=35.7
Q ss_pred cccccccccccc------------Ccee-cCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVY------------KPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~------------~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
+-.|.||+..|. -|+. -.|+|.|-..||.+|+..+.. .-.||+||+.+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 455667666554 1443 379999999999999997531 1349999998653
No 113
>KOG4323|consensus
Probab=96.42 E-value=0.0014 Score=74.18 Aligned_cols=49 Identities=33% Similarity=0.969 Sum_probs=38.4
Q ss_pred CccCCCCC--CCCCcEEEecCCCcccccccCCCCCC----CCCCCCCCCccCcCCC
Q psy11302 319 CSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLES----VPEDDEWFCPSCKRDT 368 (764)
Q Consensus 319 C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~----~P~~g~W~C~~C~~~~ 368 (764)
|.+|.... ...+||+|+.|..+||..|+.|+.+. -| ...|||..|....
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~-~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDP-FYEWFCDVCNRGP 225 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCc-cceEeehhhccch
Confidence 66665433 34599999999999999999998863 25 6799999998533
No 114
>KOG3493|consensus
Probab=96.38 E-value=0.0015 Score=54.36 Aligned_cols=69 Identities=22% Similarity=0.148 Sum_probs=61.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
++.+...-|+...+-..+ ++||.+||..|+.+.|-.++..+|---+-+++|.-+|++|.|.+|-.+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~-dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNT-DDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCC-cccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455566669999999997 999999999999999999999999988888999999999999999888765
No 115
>KOG4172|consensus
Probab=96.21 E-value=0.0013 Score=52.98 Aligned_cols=47 Identities=30% Similarity=0.609 Sum_probs=39.7
Q ss_pred cccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 689 FLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 689 ~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
-.|.||++-..+.|..-|||. .|..|-.+.+++.... ||.||+++..
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~---CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGC---CPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCc---CcchhhHHHH
Confidence 579999998888888899995 5999999888876655 9999998764
No 116
>KOG0954|consensus
Probab=96.01 E-value=0.0025 Score=74.50 Aligned_cols=50 Identities=24% Similarity=0.817 Sum_probs=43.0
Q ss_pred CCccCccCCCCC--CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 315 KDCGCSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 315 ~~c~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
++-.|.||...+ ..++|+|||.|....|+.|.. +.++| +|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p-~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVP-EGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecC-CCCeeehhcccc
Confidence 344499999875 356999999999999999999 89999 899999999854
No 117
>KOG2879|consensus
Probab=95.93 E-value=0.0046 Score=65.28 Aligned_cols=50 Identities=24% Similarity=0.574 Sum_probs=41.0
Q ss_pred hhcccccccccccccCceec-CCCCcchHhHHHHHHhhc-CCCcCCCcccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIE-SDACNSCPYCRKEMN 737 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~-~~~~~~CP~CR~~i~ 737 (764)
.....+|++|.+-...|.+. +|+|+||..|+...+... .+. ||.|.....
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~---Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFT---CPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcc---cCccCCCCc
Confidence 35677899999999999886 599999999999887644 344 999987655
No 118
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.91 E-value=0.038 Score=54.76 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=58.9
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCe-EEEE-CCeeC--CCCcCccccCcCCCC----EE
Q psy11302 1 MYVKIRSLDG----SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQ-RLFY-KGKQL--EDEYMLFDYNVNLND----VI 68 (764)
Q Consensus 1 MqI~VKtl~G----k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~Q-rLif-~GK~L--~D~~tL~dy~I~~g~----tI 68 (764)
|+|+|++++| .++.+.+.+ ++||.+|+..|.+..++++..| .|.+ .++.| .++..+..+.-...+ +|
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~-~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l 79 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPS-TTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL 79 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCC-CCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence 7999999999 588999887 9999999999999999998885 4555 35555 455666666543333 67
Q ss_pred EEEEeecCCC
Q psy11302 69 QLMIKADIDK 78 (764)
Q Consensus 69 ~Lvvr~~~~~ 78 (764)
+|++++.++.
T Consensus 80 ~l~~rl~GGK 89 (162)
T PF13019_consen 80 RLSLRLRGGK 89 (162)
T ss_pred EEEEeccCCC
Confidence 8888876654
No 119
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.73 E-value=0.021 Score=52.20 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=44.8
Q ss_pred EEEEEeCCC-CEEEEEEc-CCCCcHHHHHHHHHhhcC--CCCCCeEEEECCeeCCCCcCcccc
Q psy11302 2 YVKIRSLDG-SKNCVLVL-SKRTLISDMKTQIENTLD--VPVDKQRLFYKGKQLEDEYMLFDY 60 (764)
Q Consensus 2 qI~VKtl~G-k~~~l~v~-~~~~TV~~LK~~I~~~~g--ip~~~QrLif~GK~L~D~~tL~dy 60 (764)
.|.||+.++ ....+++. +.++||..||++|.+... ..-..+||||+|+.|.|...|+.-
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 366777653 22456655 238999999999999983 566778999999999998887653
No 120
>KOG1039|consensus
Probab=95.66 E-value=0.0057 Score=67.53 Aligned_cols=53 Identities=26% Similarity=0.638 Sum_probs=41.1
Q ss_pred hcccccccccccccCce-----e---cCCCCcchHhHHHHHHhhcCC---CcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPI-----T---LDCVHTFCHDCLKRAFKIESD---ACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pv-----t---t~CgH~FC~~CL~~~~~~~~~---~~~~CP~CR~~i~~ 738 (764)
..+..|.||++....++ . .+|.|.||..|+..|-....+ .-+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 46889999999988876 3 579999999999999854431 11449999987643
No 121
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.64 E-value=0.0049 Score=69.19 Aligned_cols=52 Identities=21% Similarity=0.690 Sum_probs=43.0
Q ss_pred CccCccCCCCCC--CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCcc
Q psy11302 316 DCGCSICAGKTS--PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSE 370 (764)
Q Consensus 316 ~c~C~vC~~~~~--~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~ 370 (764)
+..|.+|.+.+. ...+++||.|+-+-|..|.+ +.-+| +|.|+|..|.-...+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~p-eG~WlCrkCi~~~~~ 246 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLP-EGFWLCRKCIYGEYQ 246 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecC-cchhhhhhhcccccc
Confidence 345889988764 46899999999999999999 66899 999999999854433
No 122
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.49 E-value=0.079 Score=46.23 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=58.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEE--ECCeeCCCC--cCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLF--YKGKQLEDE--YMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLi--f~GK~L~D~--~tL~dy~I~~g~tI~L 70 (764)
.|.||.++|+.+.-.+.+ ++||.+|..-|......+... -.|+ |-.+.|.+. .||.+.++..+.+|+|
T Consensus 8 ~I~vRlpdG~~l~~~F~~-~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPK-SDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEET-TSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECC-cchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 689999999999888887 999999999999988777665 6776 678888654 5999999999998886
No 123
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=95.39 E-value=0.017 Score=46.69 Aligned_cols=54 Identities=30% Similarity=0.690 Sum_probs=43.3
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPK 196 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~ 196 (764)
-+++|++|=|+. .-|.||.|+|++|... ..|+|.|.||... ..++..+|||...
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~-----------~~~~V~f~D~G~~--~~v~~~~l~~l~~ 55 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE-----------QLYEVFFIDYGNE--EVVPPSDLRPLPE 55 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC-----------CEEEEEEECCCcc--EEEeHHHeecCCC
Confidence 378999999999 9999999999999754 4588999988555 4566777777543
No 124
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.27 E-value=0.032 Score=48.73 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=48.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC------eEEE-ECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK------QRLF-YKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~------QrLi-f~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
.|.|...+|+.+.+.+.. ..+|++|...|.+.++.+... .+|. -+|..|.++.+|++++|.+|++++|.
T Consensus 4 rVtv~~~~~~~~Dl~lP~-~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPA-DVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEE-TT--EEEEEEET-TSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEcCCCcEEEEEcCC-CCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 456666556888999887 999999999999998863322 3455 57999999999999999999999873
No 125
>KOG0013|consensus
Probab=95.23 E-value=0.029 Score=57.27 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
.++.+.+.+.. .+||.++|.++..+.++++-.|+++|+|++|-|...|..++|..|..-.|.+.
T Consensus 155 T~~d~~lta~~-~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPH-YDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccC-cCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 46667788776 99999999999999999999999999999999999999999999954444333
No 126
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.20 E-value=0.0033 Score=47.01 Aligned_cols=35 Identities=31% Similarity=0.995 Sum_probs=19.7
Q ss_pred CCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 329 DKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 329 ~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+.||.|+.|.-..|..|.. +..+|+..+|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4689999999999999999 6788844489998874
No 127
>KOG4265|consensus
Probab=94.78 E-value=0.017 Score=63.25 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=39.8
Q ss_pred cccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..-.|.||+....+-+.+||.|. .|..|.+...- +... ||.||+.+...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~---CPICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNN---CPICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcC---CCccccchHhh
Confidence 45689999999999999999995 59999886553 3333 99999998764
No 128
>KOG1002|consensus
Probab=94.65 E-value=0.012 Score=66.72 Aligned_cols=53 Identities=23% Similarity=0.554 Sum_probs=41.3
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcC-CCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~ 738 (764)
..+..|.+|.+...+++.+.|.|.||+.|+......-. ....+||.|-..+.-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45678999999999999999999999999976654321 011459999877654
No 129
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=94.48 E-value=0.001 Score=70.93 Aligned_cols=128 Identities=16% Similarity=-0.001 Sum_probs=101.9
Q ss_pred hhhhhhhcccCCCCCCCccCCCCCeEEEEecCCccccCCCCCeEEEEccCCCCCCCCccccccccCccchhhcHHHHhhc
Q psy11302 434 RFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNC 513 (764)
Q Consensus 434 r~~~~~~G~H~~~~~GI~g~~~~gA~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk~~~~q~~dq~l~~~n~aL~~~~ 513 (764)
+......+.|-|.+.++.|+...++.+++.+|+|+++.+.+....|++-|++ +. +..+..-+.+..++.++..
T Consensus 21 ~~~~~~~a~~kp~l~l~v~~~~~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~-~~----~~~~~~p~~~l~~d~~~h~-- 93 (301)
T COG3440 21 FGGNREAAPHKPILLLDVGRKISTFFITENQGIYETELIEPFIQLWSFFGPK-LQ----KYGVDAPFELLQGDGKWHL-- 93 (301)
T ss_pred cccccccCCcCceeehhhHhhhhcccccccccccchhccchHHHHHhhcCcc-cc----cCCCCCchHHhhccchhhh--
Confidence 4567889999999999999999999999999999999999999999999996 32 2223344555667777754
Q ss_pred CCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEEEEecCCCCcEEEEEEEee
Q psy11302 514 NAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSDFIVWRFHLQR 583 (764)
Q Consensus 514 ~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~~~~~g~~g~~v~~f~l~R 583 (764)
+++.+.+-+++|++.- .+.+.|-.++-|-|.|.+-..|.+++-.++++++|+..+
T Consensus 94 -------------~~k~~~~~l~~~~~~~--~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~ 148 (301)
T COG3440 94 -------------DIKEGFDGLSIRTLPT--EKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEV 148 (301)
T ss_pred -------------cccccCCccccCCCcc--HhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3467888899999864 356666678888999999888888888888877776554
No 130
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.42 E-value=0.2 Score=43.68 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=56.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCCC---CcCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLED---EYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~D---~~tL~dy~I~~g~tI~L 70 (764)
.|.||.++|+.+.....+ ++||.+|.+-|....+.......|+ |-.+.|.+ +.||.+.++-.+.+|.|
T Consensus 6 ~I~iRlPdG~ri~~~F~~-~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPS-SDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 689999999999989887 9999999999976666666667776 67788854 47999999988887765
No 131
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.30 E-value=0.03 Score=67.33 Aligned_cols=55 Identities=27% Similarity=0.632 Sum_probs=41.4
Q ss_pred HHHhhhccccccccccccc-----Ccee--cCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 681 VLEHIQEKFLCIICQELVY-----KPIT--LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~-----~Pvt--t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
...++...-.|+||..++. -|-. ..|.|.|-.+||..||+.+..+ +||.||..++
T Consensus 1462 i~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s--~CPlCRseit 1523 (1525)
T COG5219 1462 IDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARS--NCPLCRSEIT 1523 (1525)
T ss_pred hhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCC--CCCccccccc
Confidence 3444555668999999876 2322 3699999999999999987643 4999997764
No 132
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.30 E-value=0.14 Score=43.44 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=46.6
Q ss_pred eCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 7 SLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 7 tl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
..+++...|.+.| ++++.++-++..+++++++++-.|.|++|.|+-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp-~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTP-NTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---T-TSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECC-CCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4578889999997 99999999999999999999999999999999999999999999998865
No 133
>KOG4692|consensus
Probab=94.23 E-value=0.026 Score=61.30 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=42.4
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.++..|+||..-....|.+||+|.-|+.||.+.+-+... |-.|++.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~----CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKR----CFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCe----eeEecceeee
Confidence 467889999998888888999999999999999887655 9999887664
No 134
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.10 E-value=0.017 Score=49.55 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=25.9
Q ss_pred cccccccccccc-C---cee----cCCCCcchHhHHHHHHhhcCCCc-------CCCcccccccccc
Q psy11302 688 KFLCIICQELVY-K---PIT----LDCVHTFCHDCLKRAFKIESDAC-------NSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~-~---Pvt----t~CgH~FC~~CL~~~~~~~~~~~-------~~CP~CR~~i~~~ 739 (764)
+..|.||+..+. . |+. ..|++.|-..||..||......+ -.||.|+.++.-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 578999998755 2 333 27999999999999998532111 2499999988653
No 135
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.93 E-value=0.28 Score=43.12 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=53.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCC-CCCCeEEE--ECCeeCCC-CcCccccCcCCCCEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDV-PVDKQRLF--YKGKQLED-EYMLFDYNVNLNDVIQ 69 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gi-p~~~QrLi--f~GK~L~D-~~tL~dy~I~~g~tI~ 69 (764)
.|.||..+|+.+...+.. ++||.+|.+-|....+- ......|+ |-.|.|.| +.||.|.|+.+..+++
T Consensus 6 ~iqiRlpdG~r~~~rF~~-~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 6 SIQIRLADGKRLVQKFNS-SHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred EEEEECCCCCEEEEEeCC-CCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 689999999999889887 99999999999987543 23455665 77888854 7899999998655444
No 136
>KOG0828|consensus
Probab=93.87 E-value=0.032 Score=63.09 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=38.7
Q ss_pred hhccccccccccccc-----------------CceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 685 IQEKFLCIICQELVY-----------------KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 685 l~e~~~C~IC~e~l~-----------------~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
.+...-|+||+..+. +-+.|||.|.|-..||++|...-... ||.||.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~---CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLI---CPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhccc---CCccCCCCC
Confidence 345677999996432 12446999999999999999866555 999999875
No 137
>KOG1785|consensus
Probab=93.58 E-value=0.032 Score=61.51 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=37.6
Q ss_pred ccccccccccCceecCCCCcchHhHHHHHHhhc-CCCcCCCcccccccccc
Q psy11302 690 LCIICQELVYKPITLDCVHTFCHDCLKRAFKIE-SDACNSCPYCRKEMNKS 739 (764)
Q Consensus 690 ~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~-~~~~~~CP~CR~~i~~~ 739 (764)
.|.||-+-=.+--.-+|||-.|..||..|.... ... ||.||..+.-.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~---CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQT---CPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCC---CCceeeEeccc
Confidence 499999876665556899999999999998544 344 99999988654
No 138
>KOG1473|consensus
Probab=93.34 E-value=0.043 Score=67.22 Aligned_cols=47 Identities=32% Similarity=0.758 Sum_probs=42.6
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
+..|.+|. +.+.++||..|++-||+.|..||+..+| ...|-|--|..
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~hP~~~~~-s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVFHPRFAVP-SAFWECEVCNI 390 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecCCccccCC-Cccchhhhhhh
Confidence 44588998 7789999999999999999999999999 99999999973
No 139
>KOG0804|consensus
Probab=93.34 E-value=0.029 Score=62.89 Aligned_cols=47 Identities=30% Similarity=0.637 Sum_probs=38.8
Q ss_pred hhcccccccccccccCce----ecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 685 IQEKFLCIICQELVYKPI----TLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pv----tt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
+.+.-+||+|++-|..-+ ++.|.|+|-..|+..|... + ||.||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---s---cpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---S---CPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---c---ChhhhhhcC
Confidence 456678999999998765 4689999999999998753 3 999998665
No 140
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=93.22 E-value=0.084 Score=41.13 Aligned_cols=48 Identities=31% Similarity=0.611 Sum_probs=37.0
Q ss_pred cceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCccccccccccc
Q psy11302 133 GDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRP 193 (764)
Q Consensus 133 g~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ 193 (764)
|++|=|+-..-|.|+.|+|++|... ..|.|.|.||.+... ++..+|||
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~-----------~~~~V~f~DyG~~~~--v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSD-----------GKVEVFFVDYGNTEV--VPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCC-----------CcEEEEEEcCCCcEE--EeHHHcCC
Confidence 6788899888899999999999862 458899998866655 44456654
No 141
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=93.17 E-value=0.55 Score=40.62 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=52.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCCC---CcCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLED---EYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~D---~~tL~dy~I~~g~tI~L 70 (764)
.|.||.++|+.+...... ++||.+|.+-|.....- .....|+ |-.+.|.+ +.||.+.|+. ++++.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~-~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNS-THKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEcCCCCEEEEEeCC-CCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 589999999999888887 99999999999876543 4556666 56788854 7899999998 444443
No 142
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.97 E-value=0.6 Score=40.88 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=54.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCCC---CcCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLED---EYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~D---~~tL~dy~I~~g~tI~L 70 (764)
.|.||.++|+...-.... ++||.+|.+-|+...+.. ....|+ |--|.+.+ +.||.+.|+.+..+|.|
T Consensus 6 ~i~iRlp~G~~~~~~F~~-~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKA-REQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCC-CChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 589999999999888887 999999999998765432 445666 77888854 57999999998887775
No 143
>KOG0825|consensus
Probab=92.97 E-value=0.03 Score=66.19 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=38.7
Q ss_pred cccccccccccccCcee---cCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 687 EKFLCIICQELVYKPIT---LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvt---t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
..-.|++|+.-+.+-.. ..|+|.||..||..|-+.... ||.||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT----CPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT----CPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc----Cchhhhhhhe
Confidence 35679999976665433 479999999999999987665 9999998865
No 144
>KOG0956|consensus
Probab=92.93 E-value=0.044 Score=64.07 Aligned_cols=44 Identities=30% Similarity=0.948 Sum_probs=37.0
Q ss_pred CccCCCCC--CCCCcEEEe--cCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 319 CSICAGKT--SPDKLIVCE--ECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~--~~~~ll~Cd--~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
|.||..-. .+..++.|| .|.-+.|..|.. +..+| .|.|||..|-
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVP-tGpWfCrKCe 55 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVP-TGPWFCRKCE 55 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcce--eEecC-CCchhhhhhh
Confidence 77776322 245899999 599999999999 88999 9999999996
No 145
>COG5417 Uncharacterized small protein [Function unknown]
Probab=92.75 E-value=0.46 Score=41.14 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=54.7
Q ss_pred EeCCCCEEEEEEcCCCCcHHHHHHHHHhhcC-----CCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 6 RSLDGSKNCVLVLSKRTLISDMKTQIENTLD-----VPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 6 Ktl~Gk~~~l~v~~~~~TV~~LK~~I~~~~g-----ip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+.-.|.++.+.+.. -.+|..|-..+.+... ..-.+.|..-.+++|.++..|.||+|.+||.+.++
T Consensus 12 t~y~g~~yDLrl~d-~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 12 TNYNGGTYDLRLPD-YLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EecCCceEEEeccc-cchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 34468999999886 8999999988888755 33467899999999999999999999999998763
No 146
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.42 Score=42.78 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=62.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
++|-.-+|.+..+.+.- +++...|....+...|-..+..|++|.|+-++-++|-.|++..+|+.|.++..
T Consensus 27 Lkvv~qd~telfFkiKk-tT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~e 96 (103)
T COG5227 27 LKVVDQDGTELFFKIKK-TTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTE 96 (103)
T ss_pred eEEecCCCCEEEEEEec-cchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHH
Confidence 45555678888999885 99999999999999999999999999999999999999999999998876643
No 147
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=92.34 E-value=0.18 Score=41.17 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=36.9
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCccccccccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDI 191 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~i 191 (764)
.-|.+|+.|.+|=.....||||+|++...+. -+|.|+|+|- -..+++..+|
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~----------~~y~V~Y~DG---tel~lke~di 54 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKS----------DRYTVLYEDG---TELELKENDI 54 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTT----------TEEEEEETTS----EEEEECCCE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccC----------ceEEEEEcCC---CEEEeccccc
Confidence 4688999999999999999999999876653 6899998743 2266666665
No 148
>KOG4362|consensus
Probab=92.24 E-value=0.086 Score=62.57 Aligned_cols=59 Identities=31% Similarity=0.688 Sum_probs=49.8
Q ss_pred HHHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 680 EVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.....+...+.|+||...++.|+++.|-|.||..|+...|..... .+.||+|+..+...
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEKR 71 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhhh
Confidence 556677889999999999999999999999999999988876552 25599999877654
No 149
>KOG4739|consensus
Probab=92.16 E-value=0.042 Score=57.44 Aligned_cols=59 Identities=29% Similarity=0.666 Sum_probs=39.1
Q ss_pred ccccccccccc-Cce-ecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 689 FLCIICQELVY-KPI-TLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 689 ~~C~IC~e~l~-~Pv-tt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
..|-.|..-.. .|. .|.|+|.||..|....... . ||.|+..+.. .+.|..|..-|..||
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~---C~lCkk~ir~----i~l~~slp~~ik~~F 64 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---V---CPLCKKSIRI----IQLNRSLPTDIKSYF 64 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc---c---cccccceeee----eecccccchhHHHHc
Confidence 45777775433 333 3699999999998754432 3 9999999654 344444656666666
No 150
>KOG1645|consensus
Probab=92.10 E-value=0.085 Score=58.68 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=39.3
Q ss_pred ccccccccccccCc-----eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKP-----ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~P-----vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+||||++-..-| +.+.|||-|-..|+++|+- +. ..+.||.|...-.++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~-~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KK-TKMQCPLCSGKATKR 58 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hh-hhhhCcccCChhHHH
Confidence 35799999988876 4468999999999999995 33 236699997765554
No 151
>KOG4185|consensus
Probab=91.96 E-value=0.12 Score=55.87 Aligned_cols=66 Identities=27% Similarity=0.514 Sum_probs=50.4
Q ss_pred cccccccccccc------CceecCCCCcchHhHHHHHHhhcCCCcCCCccccccc--cccc-CCCCccHHHHHHHHHh
Q psy11302 688 KFLCIICQELVY------KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEM--NKSC-LETHSNDALQSILSTL 756 (764)
Q Consensus 688 ~~~C~IC~e~l~------~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i--~~~~-~~~~vN~~L~~lIe~l 756 (764)
.+.|-||-+.+. .|..+.|||+||..|+...+...... ||.||... .... ..+..|..+..++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~---cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRIL---CPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceee---ccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 457889987655 47778899999999999988877766 99999984 2211 2577888887777664
No 152
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.87 E-value=0.065 Score=43.72 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=36.9
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.....|-.|...-...+.++|||..|..|...+--+ . ||.|-+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYn---g---CPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYN---G---CPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChhhcc---C---CCCCCCcccC
Confidence 345678888888888899999999999997654332 3 9999988765
No 153
>KOG1001|consensus
Probab=91.71 E-value=0.088 Score=63.34 Aligned_cols=48 Identities=31% Similarity=0.829 Sum_probs=40.8
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.+.|.+|.+ ...++.+.|+|.||..|+...+...... .||.||..+..
T Consensus 454 ~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~--~~~~cr~~l~~ 501 (674)
T KOG1001|consen 454 SHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENA--PCPLCRNVLKE 501 (674)
T ss_pred ccccccccc-cccceeecccchHHHHHHHhccccccCC--CCcHHHHHHHH
Confidence 389999999 8888999999999999999988765532 59999987754
No 154
>KOG4275|consensus
Probab=91.70 E-value=0.038 Score=58.88 Aligned_cols=43 Identities=35% Similarity=0.810 Sum_probs=35.2
Q ss_pred ccccccccccccCceecCCCCcc-hHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTF-CHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~F-C~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
...|.||++...+.+.++|||.. |..|-.+.- . ||.||+.+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----e---CPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----E---CPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc-----c---CchHHHHHHH
Confidence 67899999999999999999954 888855432 3 9999987654
No 155
>KOG1814|consensus
Probab=91.62 E-value=0.3 Score=54.58 Aligned_cols=50 Identities=36% Similarity=0.721 Sum_probs=36.2
Q ss_pred hhcccccccccccccCc---eecCCCCcchHhHHHHHHhhcC----CCcCCCccccc
Q psy11302 685 IQEKFLCIICQELVYKP---ITLDCVHTFCHDCLKRAFKIES----DACNSCPYCRK 734 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~P---vtt~CgH~FC~~CL~~~~~~~~----~~~~~CP~CR~ 734 (764)
+...|.|.||++...-. +.+||+|.||+.|+...|.... .+.+.||-+..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45568899999876543 3479999999999999887532 22245776644
No 156
>KOG3800|consensus
Probab=91.47 E-value=0.16 Score=54.36 Aligned_cols=47 Identities=28% Similarity=0.726 Sum_probs=37.7
Q ss_pred ccccccc-cccCcee----cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 690 LCIICQE-LVYKPIT----LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 690 ~C~IC~e-~l~~Pvt----t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.||+|.. .+.+|-. -+|+|+.|-+|+.+.|..+... ||-|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~---CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQ---CPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCC---CCcccchhhhc
Confidence 5999985 3445521 3899999999999999998877 99998888764
No 157
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=91.41 E-value=0.38 Score=39.21 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=34.1
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
++||+.|-|++ .-|.|++|+|++|..+. ...-|+|-|.++
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~~--------~~~~YyVHY~g~ 40 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREKN--------GEPEYYVHYQGW 40 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEECT--------TCEEEEEEETTS
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEecC--------CCEEEEEEcCCC
Confidence 57999999999 99999999999999963 348899999877
No 158
>KOG1246|consensus
Probab=91.40 E-value=0.14 Score=63.95 Aligned_cols=47 Identities=43% Similarity=1.209 Sum_probs=42.7
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
|..|.+.... .++.|+.|...||.+|+.||+..+| +++|.|+.|...
T Consensus 158 ~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 158 CNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVP-DGDWRCPKCIPT 204 (904)
T ss_pred hhccccCCCc-cceecccccCcccccccCCCCCcCC-cCcccCCccccc
Confidence 8999988777 5559999999999999999999999 999999999864
No 159
>KOG3002|consensus
Probab=91.19 E-value=0.16 Score=55.47 Aligned_cols=60 Identities=22% Similarity=0.485 Sum_probs=46.1
Q ss_pred hhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 685 IQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..+.+.||+|.+.+..|+.- +=||..|.+|-.... . .||.||..++.. .++.|..+++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~----~---~CP~Cr~~~g~~-----R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS----N---KCPTCRLPIGNI-----RCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhc----c---cCCccccccccH-----HHHHHHHHHHhc
Confidence 45678999999999999753 558999999965322 1 299999999942 677888887754
No 160
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.83 E-value=0.17 Score=40.38 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=21.3
Q ss_pred cccccccccCc--eec--CCCCcchHhHHHHHHhhcCCCcCCCccccccc
Q psy11302 691 CIICQELVYKP--ITL--DCVHTFCHDCLKRAFKIESDACNSCPYCRKEM 736 (764)
Q Consensus 691 C~IC~e~l~~P--vtt--~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i 736 (764)
|++|.+.+..- -.. +||+.+|..|........... ||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~---CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGR---CPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB----TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCC---CCCCCCCC
Confidence 78888877321 112 689999999999988754544 99999864
No 161
>KOG3161|consensus
Probab=90.71 E-value=0.13 Score=59.85 Aligned_cols=44 Identities=32% Similarity=0.857 Sum_probs=35.2
Q ss_pred hhccccccccccccc----CceecCCCCcchHhHHHHHHhhcCCCcCCCcccccc
Q psy11302 685 IQEKFLCIICQELVY----KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKE 735 (764)
Q Consensus 685 l~e~~~C~IC~e~l~----~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~ 735 (764)
+.+.+.|+||...+. .||.+.|||+.|..|++....+. || |..+
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~s------cp-~~~D 55 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNAS------CP-TKRD 55 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhcc------CC-CCcc
Confidence 556788999987765 69999999999999999877654 77 5443
No 162
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.65 E-value=0.21 Score=43.69 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=34.5
Q ss_pred cccccccccccC----ceec-CCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 689 FLCIICQELVYK----PITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 689 ~~C~IC~e~l~~----Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
-.|+-|+.-+.. |+.- .|.|.|-..||.+|+..+.. ||++|+.+..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~----CPld~q~w~~ 82 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGV----CPLDRQTWVL 82 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCC----CCCCCceeEE
Confidence 457777764421 3433 69999999999999998665 9999987653
No 163
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.61 E-value=1.6 Score=38.96 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=55.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC--eeCC--------CCcCccccCcCCCCEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG--KQLE--------DEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G--K~L~--------D~~tL~dy~I~~g~tI~L 70 (764)
.|.||.++|+...-.... ++||++|..-|.. .+..+....|+++= |+|. .+.||.+.||.+..+|.|
T Consensus 6 ~I~iRlp~G~Rl~rrF~~-~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNGTRVERRFLF-TQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCCCEEEEEeCC-CCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 689999999998888886 9999999999964 45567888998766 8886 367999999987776654
No 164
>KOG1639|consensus
Probab=90.36 E-value=0.48 Score=49.85 Aligned_cols=70 Identities=27% Similarity=0.233 Sum_probs=51.3
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCCcHHHHHHHHHhh-cCCCCCCeEEE----ECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 1 MYVKIRSLDG-SKNCVLVLSKRTLISDMKTQIENT-LDVPVDKQRLF----YKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 1 MqI~VKtl~G-k~~~l~v~~~~~TV~~LK~~I~~~-~gip~~~QrLi----f~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
|.|++....+ -.......+..+||.|++..|... ..+.+..+|+- -+||.|.|+.+|.+|+...|++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 7888877655 233433344599999999666554 56777666654 4799999999999999999976654
No 165
>KOG1571|consensus
Probab=90.18 E-value=0.13 Score=56.53 Aligned_cols=46 Identities=24% Similarity=0.647 Sum_probs=35.4
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
....-|.||.+..++.+.+||||.-| |..-.. +... ||.||..+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~---CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQ---CPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCC---CchhHHHHHH
Confidence 34567999999999999999999877 655433 2334 9999998764
No 166
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.52 E-value=2.4 Score=37.67 Aligned_cols=69 Identities=10% Similarity=0.235 Sum_probs=59.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCC---CCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLE---DEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~---D~~tL~dy~I~~g~tI~Lvv 72 (764)
+|.||.++|+...-.... ++++.+|-.-|.. .|.+++...|+ |=-|+|. .+.||.+.|+.+..+|.|--
T Consensus 7 ~i~vRlP~G~r~~rrF~~-~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPE-QAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCC-CCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 689999999999888887 9999999999998 57888989988 6677773 35799999999999887753
No 167
>KOG3039|consensus
Probab=89.48 E-value=0.22 Score=52.05 Aligned_cols=49 Identities=10% Similarity=0.384 Sum_probs=40.8
Q ss_pred cccccccccccccCcee----cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYKPIT----LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvt----t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.||+|.+.+.+.+. -+|||.||..|++..++... .||.|-.++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~----v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM----VDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc----cccCCCCcCccc
Confidence 67999999999998543 48999999999999887543 399999888765
No 168
>KOG2817|consensus
Probab=89.36 E-value=0.24 Score=55.19 Aligned_cols=52 Identities=35% Similarity=0.664 Sum_probs=41.4
Q ss_pred hhhccccccccccccc---CceecCCCCcchHhHHHHHHhhcCCCcCCCccccccc
Q psy11302 684 HIQEKFLCIICQELVY---KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEM 736 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~---~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i 736 (764)
.....|.|||=.+.-. .|+.+.|||..|+.-|.+..+++..+ .+||.|....
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~s-fKCPYCP~e~ 384 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQS-FKCPYCPVEQ 384 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCee-eeCCCCCccc
Confidence 3567899999776554 58999999999999999999888721 3499996654
No 169
>KOG0827|consensus
Probab=88.61 E-value=0.28 Score=54.39 Aligned_cols=50 Identities=24% Similarity=0.565 Sum_probs=34.6
Q ss_pred cccccccccccCc---eec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 689 FLCIICQELVYKP---ITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 689 ~~C~IC~e~l~~P---vtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
-.|.||.+.+-.- -.+ .|||+|-..||..||..-... ..||.|+-.+..+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc-CCCCceeecccce
Confidence 3699995543321 113 499999999999999976532 3499999555543
No 170
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=88.33 E-value=0.46 Score=37.95 Aligned_cols=42 Identities=24% Similarity=0.690 Sum_probs=32.2
Q ss_pred ccccccc--cccCceecCCC-----CcchHhHHHHHHhhcCCCcCCCcccc
Q psy11302 690 LCIICQE--LVYKPITLDCV-----HTFCHDCLKRAFKIESDACNSCPYCR 733 (764)
Q Consensus 690 ~C~IC~e--~l~~Pvtt~Cg-----H~FC~~CL~~~~~~~~~~~~~CP~CR 733 (764)
.|-||++ .-.+|...||. |.|=..||.+|+..... ..||.|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~--~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGN--KTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCC--CcCCCCC
Confidence 4889996 44567788985 67889999999987642 2499984
No 171
>KOG1734|consensus
Probab=87.63 E-value=0.19 Score=53.26 Aligned_cols=52 Identities=21% Similarity=0.655 Sum_probs=38.6
Q ss_pred hcccccccccccccCc----------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKP----------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P----------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.++.-|.+|..-+..- .+++|+|.|--.||..|---+.. -+||.|+..+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCC--CCCchHHHHhhHh
Confidence 3566799998765543 36899999999999999665432 2399999887654
No 172
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=86.77 E-value=3 Score=35.82 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=50.0
Q ss_pred EEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCC-CCCeEEEE----C--CeeCCCCcCccccCcC--CCCEEEEEE
Q psy11302 5 IRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVP-VDKQRLFY----K--GKQLEDEYMLFDYNVN--LNDVIQLMI 72 (764)
Q Consensus 5 VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip-~~~QrLif----~--GK~L~D~~tL~dy~I~--~g~tI~Lvv 72 (764)
|+.+||...++++++ ++|+.+|-++|++..++. .+-.=|.| . ..-|+.+++|.++... ...++++.+
T Consensus 1 V~llD~~~~~~~v~~-~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDP-KTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEET-TSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcC-CCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 688999999999997 999999999999999975 33345777 1 2345778888888766 334455444
No 173
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=85.75 E-value=2.1 Score=38.36 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=35.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVD 40 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~ 40 (764)
+.+++|++.|+.+.+.+.+ +.++.+|++.|++++|++..
T Consensus 1 f~FK~~~~~GrvhRf~~~~-s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRP-SESLEELRTLISQRLGDDDF 39 (86)
T ss_pred CcEEeeCCCCCEEEEEecC-CCCHHHHHHHHHHHhCCccc
Confidence 3578999999999999997 99999999999999999874
No 174
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.83 E-value=5.7 Score=35.02 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=56.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCC---CCcCccccCcCCCCEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLE---DEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~---D~~tL~dy~I~~g~tI~Lv 71 (764)
+|.||.++|+...-.... ++++++|-.-|... |.++...+|+ |=-|+|. .+.||.+.|+....+|.|-
T Consensus 6 ~i~iRlP~G~r~~rrF~~-t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLG-DTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCC-CCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 689999999998888887 99999999999874 7777888887 7778774 2569999999888877663
No 175
>PRK06437 hypothetical protein; Provisional
Probab=83.63 E-value=6.4 Score=33.43 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=42.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.++...+++.. ..||.+|-+. .++++...-++.+|+++. .++-|++||.|.++-
T Consensus 9 g~~~~~~~i~~-~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDH-ELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCC-CCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 45666777765 7899988765 488899999999999998 445578899999875
No 176
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=83.44 E-value=2.2 Score=40.75 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.3
Q ss_pred ccccccccccccEEecccCCCCCcc
Q psy11302 198 LITEFNENLIGVRVMGNYNAEEPRE 222 (764)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (764)
....+.++++|+.|.|-||+++|++
T Consensus 85 ~~~~~~~~~~G~~V~V~Y~P~~P~~ 109 (148)
T PF12158_consen 85 FGSYWPKYPIGDTVTVYYNPNNPEE 109 (148)
T ss_pred cccCCccCCCcCEEEEEECCcCCCe
Confidence 3336667999999999999999996
No 177
>PHA03096 p28-like protein; Provisional
Probab=83.26 E-value=0.65 Score=50.42 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=32.0
Q ss_pred cccccccccccC-c-------eecCCCCcchHhHHHHHHhhcCCCcCCCccccc
Q psy11302 689 FLCIICQELVYK-P-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRK 734 (764)
Q Consensus 689 ~~C~IC~e~l~~-P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~ 734 (764)
-.|.||++.... + +...|.|.||..|+..|....... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~-e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYK-ETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhc-ccCccccc
Confidence 679999996653 2 223799999999999998865432 33555544
No 178
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.70 E-value=0.7 Score=37.76 Aligned_cols=32 Identities=38% Similarity=0.927 Sum_probs=27.5
Q ss_pred ccCccCCCCCC-CCCcEEEecCCCcccccccCC
Q psy11302 317 CGCSICAGKTS-PDKLIVCEECQHYYHIWCLKP 348 (764)
Q Consensus 317 c~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~P 348 (764)
..|.+|+..-. .++++.|..|...||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45999998763 789999999999999999863
No 179
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=82.51 E-value=5.8 Score=32.90 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=40.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+| +|+.+ ++.. ..|+.+||.++.. +.=.+|++|-+..++..| ++||.|.+.-|
T Consensus 1 M~I~v---N~k~~--~~~~-~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L-----~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKEI--ETEE-NTTLFELRKESKP------DADIVILNGFPTKEDIEL-----KEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEEE--EcCC-CcCHHHHHHhhCC------CCCEEEEcCcccCCcccc-----CCCCEEEEEeC
Confidence 77776 35544 4444 6899999998764 344789999999876655 67999888643
No 180
>KOG0298|consensus
Probab=82.26 E-value=1 Score=56.83 Aligned_cols=53 Identities=25% Similarity=0.570 Sum_probs=44.2
Q ss_pred HHhhhccccccccccccc-CceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 682 LEHIQEKFLCIICQELVY-KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~-~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
...+...+.|+||.+++. .-..+.|||-+|..|...|+.++.. ||.|......
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~----~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSR----CPICKSIKGD 1200 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhcc----Ccchhhhhhh
Confidence 344556789999999999 5667899999999999999999876 9999866554
No 181
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=81.98 E-value=2.2 Score=34.76 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=26.1
Q ss_pred cccccEEecccCCCCCccccceeeeeEeeecccccceeeE
Q psy11302 205 NLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELI 244 (764)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 244 (764)
|+||++|++-| +.|-||.|+|.+++......+-+
T Consensus 1 ~~vG~~v~~~~------~~~~~y~A~I~~~r~~~~~~~Yy 34 (55)
T PF11717_consen 1 FEVGEKVLCKY------KDGQWYEAKILDIREKNGEPEYY 34 (55)
T ss_dssp --TTEEEEEEE------TTTEEEEEEEEEEEECTTCEEEE
T ss_pred CCcCCEEEEEE------CCCcEEEEEEEEEEecCCCEEEE
Confidence 57999999999 56899999999998865544433
No 182
>PF04641 Rtf2: Rtf2 RING-finger
Probab=81.64 E-value=1.9 Score=46.17 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=38.2
Q ss_pred hhcccccccccccccCc---ee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKP---IT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~P---vt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
....|.|||....|..- |. .+|||.|+..+|...- .... ||.|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~---Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKK---CPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccc---ccccCCccccC
Confidence 45689999999988532 22 3999999999999873 2223 99999998764
No 183
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=81.64 E-value=6.6 Score=45.21 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=38.3
Q ss_pred CCccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 126 DSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 126 ~~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
.-.-|+||+.|-|+=..-|.|.+|+|+.+..... ..+.+.-|+|-|.++
T Consensus 50 ~~~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~----~~~~~~~YYVHY~g~ 98 (450)
T PLN00104 50 VMLPLEVGTRVMCRWRFDGKYHPVKVIERRRGGS----GGPNDYEYYVHYTEF 98 (450)
T ss_pred ccceeccCCEEEEEECCCCCEEEEEEEEEeccCC----CCCCCceEEEEEecC
Confidence 3567999999999987789999999999987431 112345699999866
No 184
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=80.31 E-value=1.1 Score=48.93 Aligned_cols=49 Identities=20% Similarity=0.468 Sum_probs=33.9
Q ss_pred ccccccccccccCc--ee--cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKP--IT--LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~P--vt--t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+-.||+|++.|..- -. -+||-..|..|.......-... ||.||......
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngr---cpacrr~y~de 66 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGR---CPACRRKYDDE 66 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCC---ChHhhhhcccc
Confidence 34499999876521 11 3788888999987654443333 99999987654
No 185
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=79.53 E-value=8.4 Score=36.77 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=62.2
Q ss_pred cceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccccccccccccccEEe
Q psy11302 133 GDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVM 212 (764)
Q Consensus 133 g~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~~~~~~ 212 (764)
|+.|=||...-|-+|-|+|.+.... -.|.|.|+ ......+...+|-+..-.. .+.|++||.|+
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~~~-----------~~~lV~f~---~~~~~~v~~~~iI~~~~~~---~~~L~~GD~VL 63 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCVSS-----------GQFLVEFD---DGDTQEVPISDIIALSDAM---RHSLQVGDKVL 63 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEccCC-----------CEEEEEEC---CCCEEEeChHHeEEccCcc---cCcCCCCCEEE
Confidence 6788999999999999999887722 67889984 3444556666666655332 56789999999
Q ss_pred cccCCCCCccccceeeeeEeeecccccce
Q psy11302 213 GNYNAEEPRERGYWHDMIIEKKQGKRLTT 241 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 241 (764)
+- .|...--|+-+.|...-++|...
T Consensus 64 A~----~~~~~~~Y~Pg~V~~~~~~~~~~ 88 (124)
T PF15057_consen 64 AP----WEPDDCRYGPGTVIAGPERRASE 88 (124)
T ss_pred Ee----cCcCCCEEeCEEEEECccccccC
Confidence 99 22223338889998755444333
No 186
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=79.47 E-value=0.96 Score=45.13 Aligned_cols=33 Identities=30% Similarity=0.812 Sum_probs=27.0
Q ss_pred CccCC---CCCCCCCcEEEecCCCcccccccCCCCC
Q psy11302 319 CSICA---GKTSPDKLIVCEECQHYYHIWCLKPPLE 351 (764)
Q Consensus 319 C~vC~---~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~ 351 (764)
|.+|+ ....-+.|++|-+|-.+||-.||.|-..
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ 37 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQ 37 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccc
Confidence 77784 3445689999999999999999998653
No 187
>KOG2114|consensus
Probab=78.39 E-value=1.1 Score=54.22 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=35.9
Q ss_pred hcccccccccccccCcee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 686 QEKFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
-+.-.|..|.-.+.-|+. ..|||.|-..|+. .+... ||.|+....
T Consensus 838 ~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~---CP~C~~e~~ 883 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDK---CPKCLPELR 883 (933)
T ss_pred eeeeeecccCCccccceeeeecccHHHHHhhc----cCccc---CCccchhhh
Confidence 344589999999999965 6999999999998 23344 999988544
No 188
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=78.12 E-value=3.3 Score=36.17 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.0
Q ss_pred cCCCCcHHHHHHHHHhhcC-CCCCCeEEEECCeeCCCCcCccccC-cCCCCEEEEEEe
Q psy11302 18 LSKRTLISDMKTQIENTLD-VPVDKQRLFYKGKQLEDEYMLFDYN-VNLNDVIQLMIK 73 (764)
Q Consensus 18 ~~~~~TV~~LK~~I~~~~g-ip~~~QrLif~GK~L~D~~tL~dy~-I~~g~tI~Lvvr 73 (764)
.+ +++|.++++-|..... ..-..-.|.++|+.|+|...|++.. +++|.+|+|+..
T Consensus 2 ~~-~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 2 SP-TDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred Ch-hhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 44 8999999999998755 5566678999999999998888874 888999998854
No 189
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.76 E-value=1.9 Score=41.47 Aligned_cols=52 Identities=25% Similarity=0.571 Sum_probs=41.6
Q ss_pred cccccccccccccCceec----CCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYKPITL----DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt----~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
...+|.||++...+...+ =||-+.|..|.-..++..... ..||.|++.+..+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~y-pvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLY-PVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccC-CCCCccccccccc
Confidence 456899999998888776 399999999999888765421 3499999998764
No 190
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=77.72 E-value=0.99 Score=40.32 Aligned_cols=58 Identities=22% Similarity=0.507 Sum_probs=39.0
Q ss_pred CCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.-|...-+. .|..|+-.+++-.++++. |...||+.|+.--|.+-- .+=.||.|+..
T Consensus 23 ~CgICr~~fdg-----~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~--~~~~CPmCR~~ 80 (85)
T PF12861_consen 23 VCGICRMPFDG-----CCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQS--SKGQCPMCRQP 80 (85)
T ss_pred ceeeEeccccc-----CCCCccCCCCCCceeecc-CccHHHHHHHHHHHcccc--CCCCCCCcCCe
Confidence 45566653322 266677665555566554 999999999988777632 34599999954
No 191
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.08 E-value=0.72 Score=48.20 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=37.4
Q ss_pred ccccccccccccc-Cc-ee---c-CCCCcchHhHHHHHHhhcCCCcCCCc--cccccccc
Q psy11302 687 EKFLCIICQELVY-KP-IT---L-DCVHTFCHDCLKRAFKIESDACNSCP--YCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~-~P-vt---t-~CgH~FC~~CL~~~~~~~~~~~~~CP--~CR~~i~~ 738 (764)
.+-.||+|+...+ +| +. - .|-|..|-+|+.+.|..+... || -|.+.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAq---CP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQ---CPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCC---CCCccHHHHHHH
Confidence 3568999996433 45 21 2 499999999999999988877 99 78776654
No 192
>KOG4299|consensus
Probab=76.71 E-value=3 Score=49.19 Aligned_cols=47 Identities=34% Similarity=0.844 Sum_probs=36.8
Q ss_pred ccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
..|..|. ..+.+++|+.|+.+||+.|..+++...-..+.|.|..|..
T Consensus 48 ts~~~~~---~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 48 TSCGICK---SGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhcchhh---hcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 3488888 4578899999999999999999998221146888888863
No 193
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=76.69 E-value=1.9 Score=47.31 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=37.4
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhh-cCCCcCCCccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKI-ESDACNSCPYCRKEM 736 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~-~~~~~~~CP~CR~~i 736 (764)
-++...|.||-+-+.--..+||+|..|..|-.+..+- .. +.||.||...
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~---K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQ---KGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhc---cCCCcccccc
Confidence 4667789999998887778999999999997654331 12 2399999753
No 194
>KOG4583|consensus
Probab=76.12 E-value=1.2 Score=48.86 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=53.1
Q ss_pred EEEEEeCCCCEE--EEEEcCCCCcHHHHHHHHHhhcCC--CCCCeEEEECCeeCCCCcCccccCcC--CCCEEEEEEe
Q psy11302 2 YVKIRSLDGSKN--CVLVLSKRTLISDMKTQIENTLDV--PVDKQRLFYKGKQLEDEYMLFDYNVN--LNDVIQLMIK 73 (764)
Q Consensus 2 qI~VKtl~Gk~~--~l~v~~~~~TV~~LK~~I~~~~gi--p~~~QrLif~GK~L~D~~tL~dy~I~--~g~tI~Lvvr 73 (764)
.++||..+.+-. .|..+- ..||++||..++...-- -+.+|||||+||.|.|..-|.|.-++ ...++||+..
T Consensus 11 ~lliks~Nq~y~dl~i~~dl-~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDL-KWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN 87 (391)
T ss_pred EEEecCCCccccceeeehhh-hhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 356777765544 556554 89999999999987642 25679999999999999988887543 4567777764
No 195
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=75.56 E-value=2.2 Score=45.92 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=39.4
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
..+||||.+-|.-..-|.|++|.|..|.... -.+-|.|.+|.... .+.+.+|+|....
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~----------~~~~V~f~gYgn~e--~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEED----------GTCVVVFTGYGNEE--EVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTT----------TEEEEEETTTTEEE--EEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCC----------CEEEEEEcccCCeE--eeehhhhcccccc
Confidence 4789999999999999999999999997652 35559999995443 4455677776543
No 196
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=75.38 E-value=9.7 Score=33.15 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=44.5
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCCcHHHHHHHHHhhcC-CCC--CCeEEEECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 1 MYVKIRSLD------G-SKNCVLVLSKRTLISDMKTQIENTLD-VPV--DKQRLFYKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 1 MqI~VKtl~------G-k~~~l~v~~~~~TV~~LK~~I~~~~g-ip~--~~QrLif~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
|+|+|+.+. | ....+++.. ..||.+|.+.|..... +.. ....+..+|+...++ +-|++||.|.+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEE
Confidence 678888752 4 456777765 8999999999977651 111 112466788876543 34678999998
Q ss_pred E
Q psy11302 71 M 71 (764)
Q Consensus 71 v 71 (764)
+
T Consensus 76 ~ 76 (82)
T PLN02799 76 I 76 (82)
T ss_pred e
Confidence 7
No 197
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=75.33 E-value=1.6 Score=35.08 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=22.8
Q ss_pred ccccccccccccCceec-CCCCcchHhHHHHHHhhcC-CCcCCCccccc
Q psy11302 688 KFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIES-DACNSCPYCRK 734 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~ 734 (764)
.+.||+....+..|+.. .|.|.-|-+ +..++.... ...+.||.|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 37899999999999985 799997744 233333211 11256999975
No 198
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=74.94 E-value=2.9 Score=41.46 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=16.7
Q ss_pred cccccccccccccCceecCC
Q psy11302 687 EKFLCIICQELVYKPITLDC 706 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~C 706 (764)
++..||||++...+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999988744
No 199
>KOG1493|consensus
Probab=74.77 E-value=1.1 Score=39.14 Aligned_cols=36 Identities=25% Similarity=0.775 Sum_probs=27.3
Q ss_pred ceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 701 PITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 701 Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
|+.+ -|.|.|=..||.+|+...... -.||+||+.+.
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq-~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQ-GQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccc-ccCCcchheeE
Confidence 4443 699999999999999865421 23999998765
No 200
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=73.99 E-value=17 Score=31.01 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=39.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
...+++.. ..||.+|.+.+ ++++....+..+|..+.. +.-+++||.|.++-
T Consensus 15 ~~~~~~~~-~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRK-GMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCC-CCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 45677776 78999988776 677777788899999954 44478899998874
No 201
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=73.84 E-value=8.1 Score=34.56 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 14 CVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 14 ~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
...++- ...+..||..++.+.+++-+.--+.....+|+++++|.|.+|+-.-+|++.+...
T Consensus 6 ~q~mDI-~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 6 MQHMDI-REPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEES-SSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred EEEEec-CCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 344554 7889999999999999999999999999999999999999999888999998754
No 202
>KOG2930|consensus
Probab=72.68 E-value=2.4 Score=39.05 Aligned_cols=28 Identities=36% Similarity=0.708 Sum_probs=25.0
Q ss_pred CCCCcchHhHHHHHHhhcCCCcCCCccccccc
Q psy11302 705 DCVHTFCHDCLKRAFKIESDACNSCPYCRKEM 736 (764)
Q Consensus 705 ~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i 736 (764)
.|.|.|-..||.+|++.+.. ||+|.+..
T Consensus 80 ~CNHaFH~hCisrWlktr~v----CPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV----CPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc----CCCcCcce
Confidence 79999999999999998775 99997764
No 203
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=72.23 E-value=1.2 Score=48.51 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEcC----CCCcHHHHHHHHHh----------hcCCCCCCeE-----EEECCeeCCCCcCccccCc
Q psy11302 2 YVKIRSLDGSKNCVLVLS----KRTLISDMKTQIEN----------TLDVPVDKQR-----LFYKGKQLEDEYMLFDYNV 62 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~----~~~TV~~LK~~I~~----------~~gip~~~Qr-----Lif~GK~L~D~~tL~dy~I 62 (764)
.|++|.+.+-...|.+.. .++||.+||..+++ ..++|.+..+ |+|+-|.+.|++||.|..-
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 355566655444333222 16999999999999 8999999999 9999999999999988743
No 204
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.25 E-value=2.7 Score=47.07 Aligned_cols=33 Identities=27% Similarity=0.750 Sum_probs=25.0
Q ss_pred CCCcchHhHHHHHHhhcCC---------CcCCCccccccccc
Q psy11302 706 CVHTFCHDCLKRAFKIESD---------ACNSCPYCRKEMNK 738 (764)
Q Consensus 706 CgH~FC~~CL~~~~~~~~~---------~~~~CP~CR~~i~~ 738 (764)
|....|..|+-+||..++. .+.+||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3445699999999997652 12679999999865
No 205
>KOG3206|consensus
Probab=70.79 E-value=8.2 Score=39.89 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=46.6
Q ss_pred EEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE-ECC-----eeC-CCCcCccccCcCCCCEEEEEE
Q psy11302 15 VLVLSKRTLISDMKTQIENTLDVPVDKQRLF-YKG-----KQL-EDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 15 l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi-f~G-----K~L-~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.... ++.||.+||.+|.-..|.+++..+|. |.| -.| .++..|..|...+|-.||++=
T Consensus 17 kr~~-~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 17 KRLS-NSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhcC-CcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 3444 48999999999999999999999875 554 245 457789999999999999873
No 206
>KOG1941|consensus
Probab=70.12 E-value=2 Score=47.81 Aligned_cols=48 Identities=33% Similarity=0.697 Sum_probs=35.7
Q ss_pred ccccccccccccc-Cce---ecCCCCcchHhHHHHHHhhcCCCcCCCccccccc
Q psy11302 687 EKFLCIICQELVY-KPI---TLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEM 736 (764)
Q Consensus 687 e~~~C~IC~e~l~-~Pv---tt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i 736 (764)
-++.|..|.+.+- +|- .+||.|.|-..|+...+.+... .+||.||+..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~--rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGT--RSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCC--CCCccHHHHH
Confidence 3678999998654 232 3699999999999998865442 3499999544
No 207
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=70.09 E-value=0.47 Score=40.73 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=20.5
Q ss_pred cCccCCCCCC-C--CCcEEEe--cCCCcccccccCCCCCCCCCC------CCCCCccCcC
Q psy11302 318 GCSICAGKTS-P--DKLIVCE--ECQHYYHIWCLKPPLESVPED------DEWFCPSCKR 366 (764)
Q Consensus 318 ~C~vC~~~~~-~--~~ll~Cd--~C~~~~H~~Cl~PpL~~~P~~------g~W~C~~C~~ 366 (764)
.|.+|-.... . ...+.|+ .|...||+.||.--+.+.+.. -.+-||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 3778876533 2 3568998 899999999996555433311 2356999984
No 208
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=70.07 E-value=11 Score=33.44 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=37.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCee
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQ 50 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~ 50 (764)
|+|..- + ++.|.|.+ ..+..+|.++|.++.++|++...|.|.-..
T Consensus 5 vKV~f~-~-tIaIrvp~-~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 5 VKVHFK-Y-TVAIQVAR-GLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEE-E-EEEEEcCC-CCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 444443 3 88999987 999999999999999999999999997553
No 209
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.02 E-value=2.6 Score=45.81 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=39.5
Q ss_pred hhhccccccccccccc---CceecCCCCcchHhHHHHHHhhcCCCcCCCccccc
Q psy11302 684 HIQEKFLCIICQELVY---KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRK 734 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~---~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~ 734 (764)
.+...|.||+=.+... .|+++.|||..-+..+.+.-+.+.. ..+||.|..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~-~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVL-SFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcE-EeeCCCCCc
Confidence 5677899998777654 5899999999999999887776654 356999954
No 210
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.05 E-value=3.9 Score=49.97 Aligned_cols=108 Identities=20% Similarity=0.494 Sum_probs=57.2
Q ss_pred CCCCCcCCcCCccCCCccCccCCCC---CCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCccccccc-c
Q psy11302 301 PECTTCNDVETKHCKDCGCSICAGK---TSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPG-Q 376 (764)
Q Consensus 301 ~~C~~C~~~~~~~c~~c~C~vC~~~---~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~~~~~-~ 376 (764)
..|..|.-.. . |..|... ......|.|..|+.. ..+| -.||+|-...-.....| +
T Consensus 436 l~C~~Cg~v~--~-----Cp~Cd~~lt~H~~~~~L~CH~Cg~~----------~~~p----~~Cp~Cgs~~L~~~G~Gte 494 (730)
T COG1198 436 LLCRDCGYIA--E-----CPNCDSPLTLHKATGQLRCHYCGYQ----------EPIP----QSCPECGSEHLRAVGPGTE 494 (730)
T ss_pred eecccCCCcc--c-----CCCCCcceEEecCCCeeEeCCCCCC----------CCCC----CCCCCCCCCeeEEecccHH
Confidence 3566665422 1 5666532 234567888888652 3566 58999986633333333 3
Q ss_pred ccchhh-------hhhhccccCCCCcccCCCCccccCccceeeccCCCCCCCCCceeecceecchhhhhhhcccCCCCC
Q psy11302 377 KLKDSK-------KKARMASTNSKSTRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVS 448 (764)
Q Consensus 377 ~~k~sk-------kk~k~~s~ts~~~r~~gkg~a~~Gr~~~c~~~p~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~ 448 (764)
+..+.- +..++.++++.....+..-+....+ |. ..|.+|+ ||..-|.|.|.+.
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~------------ge-~dILiGT------QmiaKG~~fp~vt 554 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN------------GE-ADILIGT------QMIAKGHDFPNVT 554 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC------------CC-CCeeecc------hhhhcCCCcccce
Confidence 332222 2244555554433322222222222 22 3677887 7888888887653
No 211
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=68.54 E-value=29 Score=28.89 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=42.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+| +|+.+.+ + ..||.+|.+.+ ++++....+-.+|.++.- ....+.-+++||.|.++--
T Consensus 1 m~i~~---Ng~~~~~--~--~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV---NGETLQT--E--ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE---CCeEEEc--C--cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEe
Confidence 56655 5666665 3 36899988765 566666667899999863 2233455789999998853
No 212
>KOG0826|consensus
Probab=67.95 E-value=3.2 Score=45.52 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=35.2
Q ss_pred cccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCccccc
Q psy11302 687 EKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRK 734 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~ 734 (764)
+.-.|++|.....+|..+ --|-.||..|+...+..... ||.-..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~----CPVT~~ 343 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGH----CPVTGY 343 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCC----CCccCC
Confidence 456799999999999765 46999999999998885544 996543
No 213
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=67.76 E-value=7 Score=37.68 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=57.9
Q ss_pred cccceeeeee---cccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCC-CCCcccccccccccCcc----cccccc
Q psy11302 131 KVGDYVDAIL---ETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYK-DDGSSTMKFDDIRPLPK----HLITEF 202 (764)
Q Consensus 131 kvg~~vD~~d---~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~ir~ra~----~~~~~~ 202 (764)
++|+.|=|+- ..-+.|+-|.|+++.... .-|.|.-.+.. +.+...++.++|=|-.. ..- .+
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~----------~rYeV~D~d~~~~~~~~~~~~~~iIPLP~~~~~~~~-~~ 69 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDG----------NRYEVEDPDPEEEKKRYKLSRKQIIPLPKKAPPDTD-PL 69 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTT----------TEEEEEETTTCTTTEEEEEEGGGEEEE-SB--TTT--GG
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCC----------CEEEEecCCCCCCCceEEeCHHHEEECCCccCCCCC-ch
Confidence 3677887754 467999999999987763 57888876444 23567788888877666 444 78
Q ss_pred cccccccEEecccCCCCCccccceeeeeEeee
Q psy11302 203 NENLIGVRVMGNYNAEEPRERGYWHDMIIEKK 234 (764)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (764)
..+..|..||+=| |.-.-| |-|+|..-
T Consensus 70 ~~f~~g~~VLAlY----P~TT~F-Y~A~V~~~ 96 (130)
T PF07039_consen 70 AEFPKGTKVLALY----PDTTCF-YPATVVSP 96 (130)
T ss_dssp GS--TT-EEEEE-----TTSSEE-EEEEEEEE
T ss_pred hhCCCCCEEEEEC----CCCceE-EEEEEEeC
Confidence 8899999999988 444444 67777664
No 214
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=67.52 E-value=6.5 Score=35.99 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=29.1
Q ss_pred EEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 43 RLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 43 rLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
.|-|+||.|..+.+|++| |..++.-.+++++...
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~ 36 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKR 36 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccC
Confidence 488999999999999999 8888888888877543
No 215
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=67.06 E-value=22 Score=30.31 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCC----CCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDV----PVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gi----p~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
...+++.. ..||.+|.+.+...++- ......+..+|+.... +.-|++||.|.++-
T Consensus 17 ~~~~~~~~-~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPE-GATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCC-CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeC
Confidence 35677665 79999999999988643 3456678889999873 44578899999884
No 216
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=66.61 E-value=3.7 Score=46.88 Aligned_cols=63 Identities=27% Similarity=0.767 Sum_probs=45.5
Q ss_pred CCCCcCCcCCccCCCccCccCCCCC---CCCCcEEEecCCCcccccccCCC--------CCC---CCCCCCCCCccCcC
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKT---SPDKLIVCEECQHYYHIWCLKPP--------LES---VPEDDEWFCPSCKR 366 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~---~~~~ll~Cd~C~~~~H~~Cl~Pp--------L~~---~P~~g~W~C~~C~~ 366 (764)
.|.-|.. .+..|..|.|.+|.+-+ ++-.-|-||.|+.+-|+.|---- ... .. ++..+|..|-.
T Consensus 115 ~C~iC~~-~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~-d~~f~C~~C~~ 191 (446)
T PF07227_consen 115 DCKICCS-EPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTL-DMQFHCRACGK 191 (446)
T ss_pred CcchhcC-CCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccC-ceEEEccCCCC
Confidence 3666665 44789999999999864 34478899999999999995321 111 12 55899999974
No 217
>KOG0012|consensus
Probab=66.39 E-value=7.3 Score=43.33 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred CEEEEEeC--CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCC--cCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSL--DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDE--YMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl--~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~--~tL~dy~I~~g~tI~Lv 71 (764)
|.++|-+. ..+.+.+.|.. .-....|+..++...|+..+..-|+|++..|.+. .+|.++|+..+|+|.+-
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~-dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTT-DGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred CeEEEEEEecceeeecccccc-ccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 66666554 56677888887 8899999999999999999999999999999664 67999999999877654
No 218
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=65.70 E-value=13 Score=30.71 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=36.5
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCC
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDD 181 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~ 181 (764)
+||||.|-++- +-|.==|+.|..|..- .|.+.|.|..+|||..
T Consensus 1 MkvnD~VtVKT-DG~~rR~G~ilavE~F--------~EG~MYLvaL~dYP~G 43 (62)
T PF10781_consen 1 MKVNDRVTVKT-DGGPRREGVILAVEPF--------NEGTMYLVALEDYPAG 43 (62)
T ss_pred CccccEEEEec-CCcccccceEEEEeec--------cCcEEEEEEcCcCCcc
Confidence 48999999986 7788889999988877 3779999999999753
No 219
>KOG2932|consensus
Probab=65.68 E-value=2.5 Score=45.83 Aligned_cols=44 Identities=23% Similarity=0.637 Sum_probs=27.3
Q ss_pred cccccccccc-ccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 688 KFLCIICQEL-VYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 688 ~~~C~IC~e~-l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
.-.|.-|--- ..--.+++|.|.||+.|-. .... |.||.|--.+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr---~~~d---K~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECAR---SDSD---KICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhh---cCcc---ccCcCcccHHH
Confidence 3456666532 2223457999999999953 2222 44999966554
No 220
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.34 E-value=4.7 Score=47.35 Aligned_cols=48 Identities=23% Similarity=0.595 Sum_probs=29.9
Q ss_pred CCCCCCcCCcCCccCCCccCccCCCCC---CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 300 VPECTTCNDVETKHCKDCGCSICAGKT---SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 300 ~~~C~~C~~~~~~~c~~c~C~vC~~~~---~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
...|..|.... .|..|...= .....|.|..|+. ...+| |.||.|-...
T Consensus 213 ~~~C~~Cg~~~-------~C~~C~~~l~~h~~~~~l~Ch~Cg~----------~~~~~----~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCGYIL-------CCPNCDVSLTYHKKEGKLRCHYCGY----------QEPIP----KTCPQCGSED 263 (505)
T ss_pred eeEhhhCcCcc-------CCCCCCCceEEecCCCeEEcCCCcC----------cCCCC----CCCCCCCCCe
Confidence 44677777633 255565221 2355788888864 23556 9999997543
No 221
>smart00455 RBD Raf-like Ras-binding domain.
Probab=64.94 E-value=17 Score=31.16 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=43.0
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC--eeCC
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG--KQLE 52 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G--K~L~ 52 (764)
+.|-.++|+...+.+.| ..||.|+-+.|.++.|+.++.-.|++.| +.|.
T Consensus 2 ~~v~LP~~~~~~V~vrp-g~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRP-GKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECC-CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 45677899999999998 9999999999999999999999999965 4443
No 222
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=64.87 E-value=41 Score=30.45 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE----CCe-eC-CCCcCccccCcCCCCEEEEEEeec
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY----KGK-QL-EDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif----~GK-~L-~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
.++..++. .+||..+...+.+.+.| ...-||-- ++- .| +.+.||.|.+|..|.+|.|=.|..
T Consensus 15 ~~t~~FSk-~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 15 VLTKQFSK-TDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEE-T-TSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred HhHhhccc-cChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 45667776 99999999999999999 67778764 222 35 445799999999999888877753
No 223
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=64.56 E-value=21 Score=31.71 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=34.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC-CCeEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPV-DKQRLFY 46 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~-~~QrLif 46 (764)
|.|++. ..|..+.+.+.+ +.+..+|+++|++.+++.. ....|-|
T Consensus 1 ~~vK~~-~~~d~~r~~l~~-~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPP-SWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred CEEEEE-eCCeEEEEEcCC-CCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 556663 467788999997 9999999999999999864 4445555
No 224
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=64.27 E-value=24 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=36.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK 47 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~ 47 (764)
.|+|+. .+..+.+.+.+ ..|..+|+.+|++.++++.....|-|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~-~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPR-DISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECC-CCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 466665 57788999887 999999999999999988777777776
No 225
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=64.04 E-value=15 Score=31.79 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG 48 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G 48 (764)
+.|-.++|+...+.+.| ..||.++-+++.++.|+.++.--|++.|
T Consensus 2 ~~V~LPng~~t~V~vrp-g~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRP-GMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECC-CCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 56778999999999998 9999999999999999999999888875
No 226
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=63.69 E-value=0.53 Score=36.22 Aligned_cols=43 Identities=30% Similarity=0.653 Sum_probs=29.0
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.|.+|...-..+..+.--.|...||..|+..-+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-----CcCCccC
Confidence 377887665444444444599999999998766542 3888885
No 227
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=62.19 E-value=13 Score=29.79 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=27.7
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
.+++|+.|++-| - .|-||.+.|+++... ..+--.|++
T Consensus 2 ~~~~G~~~~a~~-~-----d~~wyra~I~~~~~~----~~~~V~f~D 38 (57)
T smart00333 2 TFKVGDKVAARW-E-----DGEWYRARIIKVDGE----QLYEVFFID 38 (57)
T ss_pred CCCCCCEEEEEe-C-----CCCEEEEEEEEECCC----CEEEEEEEC
Confidence 468999999998 2 589999999998764 223344665
No 228
>KOG4443|consensus
Probab=61.28 E-value=2.3 Score=50.37 Aligned_cols=52 Identities=27% Similarity=0.814 Sum_probs=38.1
Q ss_pred CCCcc-CccCCCCC--CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 314 CKDCG-CSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 314 c~~c~-C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
|..|. |.+|+..+ ..+.|+.|..|..-||-+|+.--+...--.+-|-||.|+
T Consensus 15 ~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr 69 (694)
T KOG4443|consen 15 IIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR 69 (694)
T ss_pred hhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce
Confidence 33443 88887654 456899999999999999998655433113459999997
No 229
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=61.05 E-value=50 Score=33.01 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=51.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEEEC---C---eeCCCCcCccccCcC-CCCEEEEEEe
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLFYK---G---KQLEDEYMLFDYNVN-LNDVIQLMIK 73 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLif~---G---K~L~D~~tL~dy~I~-~g~tI~Lvvr 73 (764)
.|.|..++|....+.+++ ++||.++-+.|+...|++..+ --|++- + .-|+...+|.+.... ....+++-+|
T Consensus 5 ~~~V~l~dg~~~~~~~~~-~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~r 83 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDS-STTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRVK 83 (207)
T ss_pred EEEEEecCCCEEEEEECC-CCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEEE
Confidence 578999999999999998 999999999999999995322 134442 1 346667777776654 2345555555
Q ss_pred e
Q psy11302 74 A 74 (764)
Q Consensus 74 ~ 74 (764)
.
T Consensus 84 ~ 84 (207)
T smart00295 84 F 84 (207)
T ss_pred E
Confidence 4
No 230
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=59.64 E-value=42 Score=28.15 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=44.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+| +|+.+.+. . ..||.+|-+. .++++...-+.++|.++..+.-= .+ +++||.|.++.-
T Consensus 1 m~i~v---NG~~~~~~--~-~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV---NEEQVEVD--E-QTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTA 61 (65)
T ss_pred CEEEE---CCEEEEcC--C-CCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEee
Confidence 55554 57766654 3 5788877665 58899999999999998654332 35 899999998854
No 231
>KOG4642|consensus
Probab=59.43 E-value=7.1 Score=41.53 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=56.1
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhh-cCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKI-ESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~-~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
+.+.+.|.|-+++|..||.+|-|-++=..=|...++. +.+ =|.-|.++... ++.+|..|...|..|+
T Consensus 208 vpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghf----dpvtr~~Lte~--q~ipN~alkevIa~fl 275 (284)
T KOG4642|consen 208 VPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHF----DPVTRWPLTEY--QLIPNLALKEVIAAFL 275 (284)
T ss_pred ccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccC----CchhcccCCHH--hhccchHHHHHHHHHH
Confidence 3456678999999999999999999999999888775 345 47888888775 7899999999998876
No 232
>KOG3970|consensus
Probab=57.87 E-value=8.1 Score=40.28 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=37.6
Q ss_pred ccccccccccccC--ceecCCCCcchHhHHHHHHhhcC----CCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYK--PITLDCVHTFCHDCLKRAFKIES----DACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~--Pvtt~CgH~FC~~CL~~~~~~~~----~~~~~CP~CR~~i~~ 738 (764)
.--|..|...+.+ -+.+.|-|.|-+.|+..|-.+-. ..+-.||.|...|-.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3469999987774 46689999999999999877422 011349999887754
No 233
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=56.79 E-value=62 Score=26.82 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=43.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+| +|+.+.+. . ..||.+|-+. .++++...-+..+|.++.-.. -.+.-+++||.|.++--.
T Consensus 1 m~i~v---NG~~~~~~--~-~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 1 MNIQL---NGEPRELP--D-GESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHAL 63 (66)
T ss_pred CEEEE---CCeEEEcC--C-CCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEe
Confidence 55554 57665543 3 5788887764 578888888899999886432 223337889999987543
No 234
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.99 E-value=3.9 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=25.9
Q ss_pred hhcccccccccccccCcee--cCCCCcchHhHHH
Q psy11302 685 IQEKFLCIICQELVYKPIT--LDCVHTFCHDCLK 716 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvt--t~CgH~FC~~CL~ 716 (764)
+.+.-.|++|...+...+. .||||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4556779999998887654 5999999999975
No 235
>PRK10708 hypothetical protein; Provisional
Probab=55.71 E-value=25 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=36.0
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCC
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDD 181 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~ 181 (764)
+||||.|-++- +-|.==|+.|.-|..- .|.++|.|..+|||..
T Consensus 1 MkvnD~VtVKT-DG~~rR~G~iLavE~F--------~EG~MyLvaL~dYP~G 43 (62)
T PRK10708 1 MKVNDRVTVKT-DGGPRRPGVVLAVEEF--------SEGTMYLVSLEDYPLG 43 (62)
T ss_pred CccccEEEEec-CCCccccceEEEEeec--------cCcEEEEEEcCcCCCc
Confidence 48999999986 7778888999888876 3779999999999753
No 236
>KOG1100|consensus
Probab=55.51 E-value=5.7 Score=41.30 Aligned_cols=41 Identities=32% Similarity=0.668 Sum_probs=30.6
Q ss_pred cccccccccCceecCCCC-cchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 691 CIICQELVYKPITLDCVH-TFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 691 C~IC~e~l~~Pvtt~CgH-~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
|-.|.+--..-+.+||.| .+|..|-.. ... ||.|+.....+
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~---CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRI---CPICRSPKTSS 202 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----Ccc---CCCCcChhhce
Confidence 999998777656689998 679989432 233 99998876653
No 237
>KOG0383|consensus
Probab=55.44 E-value=8.4 Score=46.76 Aligned_cols=35 Identities=34% Similarity=0.826 Sum_probs=30.4
Q ss_pred cCCCcccccccCCCCCCCCCCCCCCCccCcCCCccc
Q psy11302 336 ECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEV 371 (764)
Q Consensus 336 ~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~ 371 (764)
.|+++||..|+.|.+..-| +++|.||.|-..+..+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~-~~~~k~~~~e~~~~~~ 35 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEP-EMDPKCPGCESSSAQV 35 (696)
T ss_pred CCCcccCcCCCCcccccCC-cCCccCcchhhccccc
Confidence 4899999999999999999 9999999997555444
No 238
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=54.80 E-value=17 Score=30.35 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=40.5
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCccccccccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRP 193 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ 193 (764)
|++||+|=||=.++ .|+-|+|++-...+.........+..|+|.|=+ ++...-++.++|.|
T Consensus 1 f~~GdlVwaK~~G~-p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg--~~~~awv~~~~l~p 61 (63)
T smart00293 1 FKPGDLVWAKMKGF-PWWPALVVSPKETPDNIRKRKRFENLYPVLFFG--DKDTAWISSSKLFP 61 (63)
T ss_pred CCCCCEEEEECCCC-CCCCeEEcCcccCChhHhhccCCCCEEEEEEeC--CCCEEEECccceee
Confidence 78999999998655 599999998886543211123356789998853 33335555566554
No 239
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=54.36 E-value=4.9 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=12.5
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWC 345 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~C 345 (764)
|.+|+...+.+..-.|..|+-..|+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----S--EEE-TTT-----HHH
T ss_pred CCcCCCcCCCCceEECccCCCccChhc
Confidence 889998877668889999999999887
No 240
>KOG1428|consensus
Probab=52.34 E-value=15 Score=47.38 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.0
Q ss_pred cccCccchhhcHHHHhh
Q psy11302 496 QSFDQTLTRMNKALARN 512 (764)
Q Consensus 496 q~~dq~l~~~n~aL~~~ 512 (764)
...||++-+...||-.|
T Consensus 884 AdGDss~i~~~tALlsS 900 (3738)
T KOG1428|consen 884 ADGDSSIIHSHTALLSS 900 (3738)
T ss_pred cCCCcceeehhhhhhcc
Confidence 45799998888888543
No 241
>KOG3039|consensus
Probab=52.16 E-value=9 Score=40.55 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=32.3
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIE 722 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~ 722 (764)
+...-.|++|+..+.+||.++=||.||+.||...|-.+
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 34444689999999999999999999999998887654
No 242
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=51.86 E-value=4 Score=35.24 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=30.0
Q ss_pred CCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 303 CTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 303 C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
|.-|...-...|. .|.... .+..+.=..|+..||..|+..-|.. ...||.|+
T Consensus 22 C~IC~~~l~~~~~-----~~~~~~-~~~~i~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCP-----ECQAPQ-DECPIVWGPCGHIFHFHCISQWLKQ-----NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTC-----CHHHCT-TTS-EEEETTSEEEEHHHHHHHHTT-----SSB-TTSS
T ss_pred ccccChhhhChhh-----hhcCCc-cccceEecccCCCEEHHHHHHHHhc-----CCcCCCCC
Confidence 6666665444333 333222 2234444679999999999755432 23899986
No 243
>KOG0957|consensus
Probab=51.56 E-value=7.9 Score=44.57 Aligned_cols=52 Identities=27% Similarity=0.738 Sum_probs=37.4
Q ss_pred cCccCCCC--CCCCCcEEEecCCCcccccccCCC-CCCCCC------CCCCCCccCcCCCc
Q psy11302 318 GCSICAGK--TSPDKLIVCEECQHYYHIWCLKPP-LESVPE------DDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~Pp-L~~~P~------~g~W~C~~C~~~~~ 369 (764)
.|.||-+- .+.+++|.||.|+-..|-.|.+-- -.+||. ..-|||--|+..-+
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 47777653 356799999999999999998742 113442 14699999986443
No 244
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=51.18 E-value=1e+02 Score=25.33 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=39.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+| +|+.+.+ .. ..||.+|.+.+. ++ ....+..+|..+.... -.+.-+++||.|.++--
T Consensus 1 m~i~v---Ng~~~~~--~~-~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL---NQQTLSL--PD-GATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE---CCEEEEC--CC-CCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEee
Confidence 55555 4655544 43 679999888763 33 3456778999885432 12223788999998853
No 245
>KOG3899|consensus
Probab=51.15 E-value=9.1 Score=41.37 Aligned_cols=34 Identities=32% Similarity=0.779 Sum_probs=25.3
Q ss_pred CCCcchHhHHHHHHhhcCCC---------cCCCcccccccccc
Q psy11302 706 CVHTFCHDCLKRAFKIESDA---------CNSCPYCRKEMNKS 739 (764)
Q Consensus 706 CgH~FC~~CL~~~~~~~~~~---------~~~CP~CR~~i~~~ 739 (764)
|....|.+||-+||.++... ...||+||+.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 55668999999999865411 15599999988653
No 246
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=50.47 E-value=79 Score=27.29 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=41.2
Q ss_pred CCE-EEEEEcCCCCcHHHHHHHHHhhcC-C-C-CCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 10 GSK-NCVLVLSKRTLISDMKTQIENTLD-V-P-VDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 10 Gk~-~~l~v~~~~~TV~~LK~~I~~~~g-i-p-~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+. ..+++.....||.+|.+.|.+.+. + . .....+..+|+...+ +.-|++||.|.++-
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 443 477777523899999999998874 1 1 133567788888875 34578899999883
No 247
>KOG1812|consensus
Probab=50.26 E-value=8 Score=43.92 Aligned_cols=36 Identities=36% Similarity=0.670 Sum_probs=27.0
Q ss_pred ccccccccc-ccccCce---ecCCCCcchHhHHHHHHhhc
Q psy11302 687 EKFLCIICQ-ELVYKPI---TLDCVHTFCHDCLKRAFKIE 722 (764)
Q Consensus 687 e~~~C~IC~-e~l~~Pv---tt~CgH~FC~~CL~~~~~~~ 722 (764)
....|.||. +.+...- +..|+|-||..|+.+.+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 367899999 4433322 45799999999999988854
No 248
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=49.69 E-value=51 Score=27.75 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCC--CCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDV--PVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gi--p~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
...+.+.. ..||.+|.+.+...+.- ......+..+|+.+.+ . -.+.-+++||.|.++-
T Consensus 13 ~~~~~~~~-~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPE-GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESS-TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEE
T ss_pred CeEEecCC-CCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEEC
Confidence 55666665 89999999999887641 3467788999999988 3 4455678899999875
No 249
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=49.22 E-value=9 Score=35.23 Aligned_cols=28 Identities=32% Similarity=0.783 Sum_probs=23.4
Q ss_pred cCccCCCCCCCCCcEEEec--CCCcccccccC
Q psy11302 318 GCSICAGKTSPDKLIVCEE--CQHYYHIWCLK 347 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~ 347 (764)
.|.+|++. .+..+.|.. |...||..|..
T Consensus 57 ~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 57 KCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 48888865 577899987 99999999975
No 250
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=48.28 E-value=62 Score=26.86 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
++|+.+.+. . ..||.+|.+.+ ++++....+..+|+.+..+. -.++-|++||.|.++--
T Consensus 3 iNg~~~~~~--~-~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 3 VNGEPVEVE--D-GLTLAALLESL----GLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVTF 60 (64)
T ss_pred ECCeEEEcC--C-CCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEEe
Confidence 467766654 3 57899988864 57777778889999985332 22344889999998853
No 251
>KOG4445|consensus
Probab=48.25 E-value=9.3 Score=41.52 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=36.6
Q ss_pred hccccccccccccc-Cc--eecCCCCcchHhHHHHHHhh----------------------cCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVY-KP--ITLDCVHTFCHDCLKRAFKI----------------------ESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~-~P--vtt~CgH~FC~~CL~~~~~~----------------------~~~~~~~CP~CR~~i~~ 738 (764)
....+|.||+-=|. .| +.|+|-|-|-..||.+.+.. .... ||.||..|..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eav---cpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAV---CPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh---hhHhhhhccc
Confidence 45678999997655 45 34799999999999877652 0123 9999988865
No 252
>KOG2086|consensus
Probab=47.69 E-value=26 Score=39.49 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCC-CCCeEEE--ECCeeCCC-CcCccccCcCCCCEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVP-VDKQRLF--YKGKQLED-EYMLFDYNVNLNDVIQ 69 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip-~~~QrLi--f~GK~L~D-~~tL~dy~I~~g~tI~ 69 (764)
.|.||..+|+.....+.. +-||.+++..|...-.-. ...+-|+ |=-|.|.| ..||.+.||.+-..|+
T Consensus 307 sIQIRLanG~RlV~~fN~-sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNH-SHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred eEEEEecCCceeeeeccC-cccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 489999999999888887 899999999999886544 3355555 66788865 6799999997655444
No 253
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=47.29 E-value=61 Score=26.96 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=41.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
++|+.+.+. . ..||.+|.+++ ++++....+..+|+.+..+. -.++-|++||.|.++--
T Consensus 4 iNg~~~~~~--~-~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 4 VNGEPREVE--E-GATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTA 61 (65)
T ss_pred ECCeEEEcC--C-CCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEe
Confidence 356665554 3 68999988775 47788888999999986542 12234788999998753
No 254
>KOG3579|consensus
Probab=46.79 E-value=9.3 Score=41.19 Aligned_cols=37 Identities=24% Similarity=0.703 Sum_probs=30.6
Q ss_pred cccccccccccccCceecCC----CCcchHhHHHHHHhhcC
Q psy11302 687 EKFLCIICQELVYKPITLDC----VHTFCHDCLKRAFKIES 723 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~C----gH~FC~~CL~~~~~~~~ 723 (764)
..+.|.+|.+-|.+--...| .|.||..|-...++.+.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 45899999999988655555 69999999999998764
No 255
>PRK05580 primosome assembly protein PriA; Validated
Probab=46.72 E-value=14 Score=45.19 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=28.6
Q ss_pred CCCCCCcCCcCCccCCCccCccCCCCC---CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 300 VPECTTCNDVETKHCKDCGCSICAGKT---SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 300 ~~~C~~C~~~~~~~c~~c~C~vC~~~~---~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
...|..|.... .|..|...= .....|.|..|+. ...+| |.||.|-..
T Consensus 381 ~~~C~~Cg~~~-------~C~~C~~~l~~h~~~~~l~Ch~Cg~----------~~~~~----~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWVA-------ECPHCDASLTLHRFQRRLRCHHCGY----------QEPIP----KACPECGST 430 (679)
T ss_pred ceEhhhCcCcc-------CCCCCCCceeEECCCCeEECCCCcC----------CCCCC----CCCCCCcCC
Confidence 45666666532 266665431 2356777888864 23455 999999754
No 256
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=46.70 E-value=7.3 Score=31.11 Aligned_cols=32 Identities=28% Similarity=0.814 Sum_probs=21.6
Q ss_pred cCCC-CcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 704 LDCV-HTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 704 t~Cg-H~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..|. |-.|..||...+..+.+ ||.|..+++.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~----C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDR----CPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSE----ETTTTEE----
T ss_pred eeecchhHHHHHHHHHhccccC----CCcccCcCccc
Confidence 4566 78899999999888776 99999988764
No 257
>PHA02929 N1R/p28-like protein; Provisional
Probab=46.61 E-value=8.3 Score=40.96 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=25.5
Q ss_pred ecCCCcccccccCCCCCCCCCCCCCCCccCcCCCcccc
Q psy11302 335 EECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVI 372 (764)
Q Consensus 335 d~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~~ 372 (764)
..|.+.||..|+.+-+...+ .||.|+.....+.
T Consensus 198 ~~C~H~FC~~CI~~Wl~~~~-----tCPlCR~~~~~v~ 230 (238)
T PHA02929 198 SNCNHVFCIECIDIWKKEKN-----TCPVCRTPFISVI 230 (238)
T ss_pred CCCCCcccHHHHHHHHhcCC-----CCCCCCCEeeEEe
Confidence 47999999999988766544 7999996555443
No 258
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=46.43 E-value=22 Score=34.58 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=26.2
Q ss_pred ccccccccccccC--cee-cCCC------CcchHhHHHHHHhhc
Q psy11302 688 KFLCIICQELVYK--PIT-LDCV------HTFCHDCLKRAFKIE 722 (764)
Q Consensus 688 ~~~C~IC~e~l~~--Pvt-t~Cg------H~FC~~CL~~~~~~~ 722 (764)
...|.||++.+.+ -|. ++|+ |.||..|+.+|-+..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 7889999998877 332 3444 789999999995433
No 259
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=46.08 E-value=33 Score=30.71 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=29.9
Q ss_pred EEEcCCCCcHHHHHHHHHh-hcCCCCC----CeEEEECCee----CCCCcCccccCcCCCCEEEEE
Q psy11302 15 VLVLSKRTLISDMKTQIEN-TLDVPVD----KQRLFYKGKQ----LEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 15 l~v~~~~~TV~~LK~~I~~-~~gip~~----~QrLif~GK~----L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+.++....|+.+|-++|-. ..|+..- ..++||..-. -..+++|+++||.+|+++.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444457999999998744 5665432 2233333322 112468999999999987654
No 260
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=46.02 E-value=25 Score=37.89 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=28.5
Q ss_pred cccccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecC
Q psy11302 201 EFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGK 251 (764)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~ 251 (764)
+-.+.+|||..|+.|- +-|-||.|+|+.|...+. ...-+|.|.
T Consensus 65 ~~~~WkvGd~C~A~~s-----~Dg~~Y~A~I~~i~~~~~---~~~V~f~gY 107 (264)
T PF06003_consen 65 PNKKWKVGDKCMAVYS-----EDGQYYPATIESIDEEDG---TCVVVFTGY 107 (264)
T ss_dssp TTT---TT-EEEEE-T-----TTSSEEEEEEEEEETTTT---EEEEEETTT
T ss_pred cccCCCCCCEEEEEEC-----CCCCEEEEEEEEEcCCCC---EEEEEEccc
Confidence 3456789999999995 558899999999986433 334667775
No 261
>KOG1473|consensus
Probab=45.72 E-value=3.9 Score=51.05 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=36.5
Q ss_pred ccCccCCCCCCCCCcEEEec-CCCcccc-cccCCC--CCCCCCCCCCCCccCc
Q psy11302 317 CGCSICAGKTSPDKLIVCEE-CQHYYHI-WCLKPP--LESVPEDDEWFCPSCK 365 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~-C~~~~H~-~Cl~Pp--L~~~P~~g~W~C~~C~ 365 (764)
..|.+|+ -++.+|+|+. |+.+||+ .||+-- =..+| ++-|+|+.|.
T Consensus 429 rrl~Ie~---~det~l~yysT~pqly~ll~cLd~~~~e~~L~-d~i~~~~ee~ 477 (1414)
T KOG1473|consen 429 RRLRIEG---MDETLLWYYSTCPQLYHLLRCLDRTYVEMYLC-DGIWERREEI 477 (1414)
T ss_pred eeeEEec---CCCcEEEEecCcHHHHHHHHHhchHHHHHhhc-cchhhhHHHH
Confidence 3488888 5578999987 9999999 999832 23678 8899999997
No 262
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=44.70 E-value=69 Score=27.53 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=39.9
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC--CeeCCCCcC
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK--GKQLEDEYM 56 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~--GK~L~D~~t 56 (764)
+.|-.++|+...+.+.| ..||.++-.++.++.++.++.-.++.. .+.|..+..
T Consensus 3 ~~v~LP~~q~t~V~vrp-g~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRP-GMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-T-TSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcC-CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 56778899999999998 999999999999999999998776654 444544433
No 263
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=44.16 E-value=60 Score=27.86 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=35.0
Q ss_pred EEEEEeCCCCEEE-EEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC
Q psy11302 2 YVKIRSLDGSKNC-VLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG 48 (764)
Q Consensus 2 qI~VKtl~Gk~~~-l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G 48 (764)
.|+++.- |..+. +.+.+ ..|..+|+.+|++.++.+.....|-|..
T Consensus 3 ~vK~~~~-~~~~~~~~~~~-~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRYG-GDIRRIISLPS-DVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEET-TEEEEEEEECS-TSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEEC-CeeEEEEEcCC-CCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 3445443 44445 88887 8899999999999999998888888854
No 264
>KOG3268|consensus
Probab=44.16 E-value=17 Score=36.80 Aligned_cols=60 Identities=25% Similarity=0.475 Sum_probs=41.2
Q ss_pred HHHHhhhcccccccccccccC---ce----ecCCCCcchHhHHHHHHhhcCCCc-------CCCcccccccccc
Q psy11302 680 EVLEHIQEKFLCIICQELVYK---PI----TLDCVHTFCHDCLKRAFKIESDAC-------NSCPYCRKEMNKS 739 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~---Pv----tt~CgH~FC~~CL~~~~~~~~~~~-------~~CP~CR~~i~~~ 739 (764)
.++++-.+..-|.||..+--+ |- ...||..|-.-||..|++.-..+| -.||.|..++..+
T Consensus 157 a~Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 157 AFLEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred HhcCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 455555666779999865332 21 147999999999999998532111 2399999888764
No 265
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=43.87 E-value=71 Score=27.97 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=25.1
Q ss_pred EEEEeCCCCEE-EEEEcCCCCcHHHHHHHHHhhcCC
Q psy11302 3 VKIRSLDGSKN-CVLVLSKRTLISDMKTQIENTLDV 37 (764)
Q Consensus 3 I~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I~~~~gi 37 (764)
|+.|....+.+ .|.++....+|.+||..|.++.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 44555555444 788887789999999999887665
No 266
>KOG1940|consensus
Probab=43.81 E-value=14 Score=40.12 Aligned_cols=46 Identities=28% Similarity=0.654 Sum_probs=35.2
Q ss_pred ccccccccccccC----ceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYK----PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~----Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.+.||||.+.++. |..++|||..=..|++.....+ +. ||.|-+ +..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~---CP~C~~-~~d 207 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YT---CPICSK-PGD 207 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CC---CCcccc-hHH
Confidence 4459999987663 4557999988888888777666 66 999988 554
No 267
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=43.63 E-value=15 Score=37.92 Aligned_cols=48 Identities=27% Similarity=0.797 Sum_probs=36.8
Q ss_pred CCCCcCCcCCccCCCccCccCCCCC-----CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKT-----SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.|..|.... -.|.+|...+ +.+....|..|...||..|... =.||.|.
T Consensus 144 ~C~lC~~kG------fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----------~~CpkC~ 196 (202)
T PF13901_consen 144 SCELCQQKG------FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----------KSCPKCA 196 (202)
T ss_pred HhHHHHhCC------CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----------CCCCCcH
Confidence 677887743 3499998654 3347889999999999999972 1499997
No 268
>KOG4323|consensus
Probab=43.41 E-value=24 Score=40.82 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=48.2
Q ss_pred CccCCCCC--CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCccccccccccchhhhhhhccccCCCCcc
Q psy11302 319 CSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQKLKDSKKKARMASTNSKSTR 396 (764)
Q Consensus 319 C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~~~~~~~~k~skkk~k~~s~ts~~~r 396 (764)
|.+|.... .+..+..|+.|.++||-.|..|. +|..+.|.|..|+.... ...+-++|..++ +++.-.-.....
T Consensus 86 ~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~---~~~~~~~~~~~c~~~~~--~~~g~a~K~g~~-a~~~l~y~~~~l 159 (464)
T KOG4323|consen 86 PNVLTSETVLPENEKVICGRCKSGYHQGCNIPR---FPSLDIGESTECVFPIF--SQEGGALKKGRL-ARPSLPYPEASL 159 (464)
T ss_pred CcccccccccCchhhhhhhhhccCcccccCccC---cCcCCcccccccccccc--cccccccccccc-ccccccCccccc
Confidence 66665433 24578899999999999999875 44467899999884332 222222222222 211112344567
Q ss_pred cCCCCccc
Q psy11302 397 DWGKGMAC 404 (764)
Q Consensus 397 ~~gkg~a~ 404 (764)
+|++++..
T Consensus 160 ~wD~~~~~ 167 (464)
T KOG4323|consen 160 DWDSGHKV 167 (464)
T ss_pred ccCccccc
Confidence 78877654
No 269
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=43.12 E-value=1.6e+02 Score=24.52 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=41.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+| +|+.+.+. . ..||.+|.+. .+++.....+-.++.++.-+. -.++-+++||.|.++--
T Consensus 1 m~i~v---Ng~~~~~~--~-~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~~-w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF---NDQPMQCA--A-GQTVHELLEQ----LNQLQPGAALAINQQIIPREQ-WAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE---CCeEEEcC--C-CCCHHHHHHH----cCCCCCcEEEEECCEEeChHH-cCccccCCCCEEEEEEE
Confidence 56655 57666654 3 5789988875 455666677889999985221 22233789999998853
No 270
>KOG1952|consensus
Probab=42.81 E-value=27 Score=42.91 Aligned_cols=50 Identities=28% Similarity=0.715 Sum_probs=37.8
Q ss_pred hcccccccccccccC--cee--cCCCCcchHhHHHHHHhhcCC---CcCCCcccccc
Q psy11302 686 QEKFLCIICQELVYK--PIT--LDCVHTFCHDCLKRAFKIESD---ACNSCPYCRKE 735 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~--Pvt--t~CgH~FC~~CL~~~~~~~~~---~~~~CP~CR~~ 735 (764)
...+.|.||.+.+.. ||- ..|-|.|-..||..|-++... ..|.||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 356789999998774 432 368999999999999886332 13889999843
No 271
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=42.77 E-value=23 Score=27.51 Aligned_cols=40 Identities=35% Similarity=0.839 Sum_probs=23.2
Q ss_pred cccccccccCceec---CCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 691 CIICQELVYKPITL---DCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~Pvtt---~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
|.+|.+++..-+.= .|+-.+=..|+...|+.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~--~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSN--PKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCC--CCCcCC
Confidence 67888888877652 58888888999999987653 139987
No 272
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.10 E-value=26 Score=30.89 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=21.4
Q ss_pred cccccccccccc-----Ccee--cCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVY-----KPIT--LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~-----~Pvt--t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.-.|.||.+.+- ++.. ..|+-..|+.|.+--.+..... ||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~---CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQV---CPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB----TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCccc---ccccCCCccc
Confidence 456999987543 2322 3788888999998877777666 9999987654
No 273
>KOG0804|consensus
Probab=41.17 E-value=13 Score=42.48 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=28.3
Q ss_pred cCccCCCCCCCC-CcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 318 GCSICAGKTSPD-KLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 318 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.|.||-..=|++ ..|+---|...||..|+.- =++--||-|+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~-------w~~~scpvcR 218 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMK-------WWDSSCPVCR 218 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhh-------cccCcChhhh
Confidence 366666544443 5667778999999999872 2345678777
No 274
>KOG1512|consensus
Probab=40.30 E-value=9.6 Score=41.05 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=29.5
Q ss_pred CCCCcEEEecCCCcccccccCCCCC--CCCCCCCCCCccCc
Q psy11302 327 SPDKLIVCEECQHYYHIWCLKPPLE--SVPEDDEWFCPSCK 365 (764)
Q Consensus 327 ~~~~ll~Cd~C~~~~H~~Cl~PpL~--~~P~~g~W~C~~C~ 365 (764)
..+.+++|..|..++|.+|+.-+.. .+-..-.|-|..|.
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3467999999999999999875533 22214579999996
No 275
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=40.12 E-value=10 Score=35.31 Aligned_cols=28 Identities=25% Similarity=0.683 Sum_probs=17.5
Q ss_pred CCcccccccCCCCC-----CCCCCCCCCCccCcC
Q psy11302 338 QHYYHIWCLKPPLE-----SVPEDDEWFCPSCKR 366 (764)
Q Consensus 338 ~~~~H~~Cl~PpL~-----~~P~~g~W~C~~C~~ 366 (764)
...|--.||.-.-. .+. +.+|.||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~-~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLE-DPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhc-CCceECCCCCC
Confidence 55566666543222 233 67999999984
No 276
>KOG4628|consensus
Probab=39.31 E-value=18 Score=40.50 Aligned_cols=48 Identities=33% Similarity=0.751 Sum_probs=36.6
Q ss_pred ccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
..|.+|-..=..++.|-==-|.+.||..|.+|-|..- .=+||-|+++.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~----r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT----RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc----CccCCCCCCcC
Confidence 3599998765566655556799999999999998742 24899999633
No 277
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=38.94 E-value=1.3e+02 Score=26.81 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred eCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 7 SLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 7 tl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
+++|+.+.+. . ..||.+|-+. +++++...-+-.+|.++.- .....+-+++||.|.++.-.
T Consensus 22 ~VNG~~~~~~--~-~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 22 SINDQSIQVD--I-SSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred EECCeEEEcC--C-CCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEe
Confidence 3467766654 3 5788877765 4788877788899999943 23445558999999988643
No 278
>KOG2169|consensus
Probab=38.73 E-value=25 Score=42.57 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=49.5
Q ss_pred hhhcccccccccccccCcee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCC
Q psy11302 684 HIQEKFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFP 758 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfP 758 (764)
.+.-.|.|+|+.--+.-|.. ..|.|.-|.+-+.-.-.......+.||.|.+..... .+.+...+.++|..+--
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e--~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFE--GLIIDGYFLNILQSCQA 375 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccccc--chhhhHHHHHHHhhccC
Confidence 35668999999887776655 468777666544322222222237899998887765 68888888888876543
No 279
>KOG1632|consensus
Probab=38.32 E-value=17 Score=40.74 Aligned_cols=36 Identities=28% Similarity=0.740 Sum_probs=33.5
Q ss_pred CcEEEecCCCcccccc--cCCCCCCCCCCCCCCCccCc
Q psy11302 330 KLIVCEECQHYYHIWC--LKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 330 ~ll~Cd~C~~~~H~~C--l~PpL~~~P~~g~W~C~~C~ 365 (764)
.++.||.|..+||-.| .+.+-...|....|+|..|.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~ 111 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECK 111 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccc
Confidence 8899999999999999 99988888877899999998
No 280
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=38.22 E-value=1e+02 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=34.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG 48 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G 48 (764)
.|+++.. |..+.+.+.+...|..+|+++|.+.++++.....|-|..
T Consensus 2 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4666554 567788877338999999999999999876555555543
No 281
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=37.48 E-value=1.1e+02 Score=27.64 Aligned_cols=45 Identities=9% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEEEeC-CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCe
Q psy11302 3 VKIRSL-DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGK 49 (764)
Q Consensus 3 I~VKtl-~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK 49 (764)
|+||.. .|....+.+.+ +.+..+|.++|.+++++. ....|-|...
T Consensus 3 ikVKv~~~~Dv~~i~v~~-~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGP-DTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCC-CCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 445444 57788999887 999999999999999994 4444545433
No 282
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=37.18 E-value=1.3e+02 Score=25.76 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=48.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhc---CCCCCCeEEE-ECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTL---DVPVDKQRLF-YKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~---gip~~~QrLi-f~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
+|+...++..+ ...+--+.++--+.. +-|++.--|- -+|.+|+-++.+.|||+.++-++.|.++.
T Consensus 4 NGqPv~VEANv-naPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANV-NAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCC-CCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 57778888776 665555555544443 4777777665 57899999999999999999988888753
No 283
>PHA02862 5L protein; Provisional
Probab=36.80 E-value=31 Score=33.98 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=33.2
Q ss_pred cccccccccccCceecCCCC-----cchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 689 FLCIICQELVYKPITLDCVH-----TFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 689 ~~C~IC~e~l~~Pvtt~CgH-----~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
-.|=||++.-.+. ..||.. -.-..||.+|+..... ..|+.|+..+.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k--~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKK--KECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCC--cCccCCCCeEEE
Confidence 3688999875444 356654 2357899999976542 459999988754
No 284
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=35.47 E-value=1.5e+02 Score=33.93 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=52.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcC--CCCCCeEEEE----CCee--CCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLD--VPVDKQRLFY----KGKQ--LEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~g--ip~~~QrLif----~GK~--L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|.+|...|+ ..+++.+ +++.+.|-.+|-..+. ..|++.-+.- .|.+ +..++|+.|.|+.+|+.+.|-.
T Consensus 1 Mi~rfRsk~G~-~Rve~qe-~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQE-SDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccc-cchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 78899998776 6788887 9999999988877654 4455555443 2332 3457899999999999988876
No 285
>KOG1815|consensus
Probab=35.06 E-value=22 Score=41.16 Aligned_cols=37 Identities=30% Similarity=0.557 Sum_probs=30.2
Q ss_pred hcccccccccccccC-ceecCCCCcchHhHHHHHHhhc
Q psy11302 686 QEKFLCIICQELVYK-PITLDCVHTFCHDCLKRAFKIE 722 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~-Pvtt~CgH~FC~~CL~~~~~~~ 722 (764)
....+|.||.+.+.. .+.+.|||.||..|....+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 345889999998874 5667999999999999877754
No 286
>KOG2042|consensus
Probab=34.83 E-value=70 Score=40.26 Aligned_cols=68 Identities=16% Similarity=0.340 Sum_probs=58.4
Q ss_pred hhcccccccccccccCceecC-CCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCC
Q psy11302 685 IQEKFLCIICQELVYKPITLD-CVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFP 758 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~-CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfP 758 (764)
..++|.=|+-..++.+||.+| -+++.|++=+.+.+-..... |.||.+++.. .+.+|..|..-|+.+.-
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~td----PFNR~pLt~d--~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTD----PFNREPLTED--MVSPNEELKAKIRCWIK 935 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCC----ccccccCchh--hcCCCHHHHHHHHHHHH
Confidence 456778889999999999998 99999999999998877664 9999999987 68899999988877653
No 287
>PF12773 DZR: Double zinc ribbon
Probab=33.48 E-value=44 Score=26.18 Aligned_cols=8 Identities=38% Similarity=1.211 Sum_probs=4.0
Q ss_pred CCCCccCc
Q psy11302 358 EWFCPSCK 365 (764)
Q Consensus 358 ~W~C~~C~ 365 (764)
.++|+.|-
T Consensus 29 ~~~C~~Cg 36 (50)
T PF12773_consen 29 KKICPNCG 36 (50)
T ss_pred CCCCcCCc
Confidence 34555554
No 288
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=33.33 E-value=2.8e+02 Score=23.99 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=32.2
Q ss_pred EEEEeCC---CCEEEEEEcCCCCcHHHHHHHHHhhcCCC--CCCeEEE
Q psy11302 3 VKIRSLD---GSKNCVLVLSKRTLISDMKTQIENTLDVP--VDKQRLF 45 (764)
Q Consensus 3 I~VKtl~---Gk~~~l~v~~~~~TV~~LK~~I~~~~gip--~~~QrLi 45 (764)
|+|-..+ +...+|.|.+ ++|..++-+.+.+++++. +..-.|+
T Consensus 2 ikV~~~~~~~~~~kti~V~~-~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSK-DTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred EEEeCCcCCCccEEEEEECC-CCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 4444444 5667999997 999999999999999987 4444555
No 289
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=32.94 E-value=2.6e+02 Score=23.56 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=43.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+| +|+.+.+. ....||.+|-+. .++++...-+-.+|.++.-+. ..++-+++||.|.++.-.
T Consensus 1 m~I~v---NG~~~~~~--~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~~-w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 1 MNLKI---NGNQIEVP--ESVKTVAELLTH----LELDNKIVVVERNKDILQKDD-HTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CEEEE---CCEEEEcC--CCcccHHHHHHH----cCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEEEe
Confidence 55555 57766554 212578877664 578888888889999996432 334447999999988543
No 290
>KOG2982|consensus
Probab=32.88 E-value=52 Score=36.47 Aligned_cols=51 Identities=14% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCCeEEEE---CCeeC-----CCCcCccccCcCCCCEEEEE
Q psy11302 21 RTLISDMKTQIENTLDVPVDKQRLFY---KGKQL-----EDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 21 ~~TV~~LK~~I~~~~gip~~~QrLif---~GK~L-----~D~~tL~dy~I~~g~tI~Lv 71 (764)
+-||.+||.++..+.|+.+...|||| .|+.- .-+..|..|+|++||.+.+-
T Consensus 357 ~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 357 TRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 57999999999999999999999998 34433 22457888999999987653
No 291
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=32.82 E-value=36 Score=28.71 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=32.1
Q ss_pred cceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccccccccccccccEEecccCCCC
Q psy11302 147 FESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEE 219 (764)
Q Consensus 147 fea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~~~~~~~~~~~~~ 219 (764)
-|+.|.+|..+..+ -.-+|+-.|.+.-+ + .++-|++|++|+|-|...+
T Consensus 5 veG~I~~id~~~~t--itLdDGksy~lp~e-f----------------------~~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 5 VEGTIKSIDPETMT--ITLDDGKSYKLPEE-F----------------------DFDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred ceEEEEEEcCCceE--EEecCCCEEECCCc-c----------------------cccccCCCCEEEEEEEccC
Confidence 36777777766442 11245566666433 2 6788999999999998654
No 292
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=32.80 E-value=44 Score=33.40 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=35.5
Q ss_pred hcccccccccccccCceecCCCC-----cchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVH-----TFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH-----~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
...-.|-||++--. +...||.. ..-.+||++|+..+.. +.|+.|.+.+.-
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~--~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKN--KSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCC--CcccccCCeEEE
Confidence 34668999998754 44457664 2268899999997642 459999887643
No 293
>KOG3612|consensus
Probab=32.56 E-value=62 Score=38.07 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=34.6
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCC-CCCCCCccCcC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPE-DDEWFCPSCKR 366 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~-~g~W~C~~C~~ 366 (764)
.|.-|. -++..|.|+.|-+.||..|+.|-- .+++ .--|.||.|..
T Consensus 62 ~cfech---lpg~vl~c~vc~Rs~h~~c~sp~~-q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 62 FCFECH---LPGAVLKCIVCHRSFHENCQSPDP-QKRNYSVPSDKPQPYS 107 (588)
T ss_pred cccccc---CCcceeeeehhhccccccccCcch-hhccccccccCCcccc
Confidence 377777 678999999999999999998753 3332 23599999974
No 294
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=32.35 E-value=1.7e+02 Score=34.02 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=52.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCC----CCCCeE--EE-ECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDV----PVDKQR--LF-YKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gi----p~~~Qr--Li-f~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
.|+|...+ +...+-+.. +..|.+|-..|.+..+- +..... |. -+|..|+.+.||.+.+|.+|++++|.-+
T Consensus 4 RVtV~~~~-~~~DlaLPa-~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPA-DVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCC-CCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 46676653 345666665 89999999999888764 222223 33 4788999999999999999999999853
No 295
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=32.19 E-value=2.1e+02 Score=25.10 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=36.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE--CCeeCCCCcCc
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY--KGKQLEDEYML 57 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif--~GK~L~D~~tL 57 (764)
.+|+..+ +....-|.. .|.++|+.+..+.++++....+|+. .|-.++|+.-+
T Consensus 3 ~kV~~~~-r~~k~GV~A--~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF 56 (74)
T smart00266 3 FKVRDHD-RNVRKGVAA--SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYF 56 (74)
T ss_pred EEEecCC-CCeeEEEEc--CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHH
Confidence 3565553 334444454 7899999999999999977677654 78888776533
No 296
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=31.79 E-value=13 Score=40.11 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=37.2
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCccccccccc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVIAPGQK 377 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~~~~~~~ 377 (764)
.|.+|.. --.+-+=..|+..|..+|..--|..-| +||-|+.+..+....+..
T Consensus 27 rC~IC~~---~i~ip~~TtCgHtFCslCIR~hL~~qp-----~CP~Cr~~~~esrlr~~s 78 (391)
T COG5432 27 RCRICDC---RISIPCETTCGHTFCSLCIRRHLGTQP-----FCPVCREDPCESRLRGSS 78 (391)
T ss_pred Hhhhhhh---eeecceecccccchhHHHHHHHhcCCC-----CCccccccHHhhhcccch
Confidence 3888872 222333357999999999887777777 999999877766655544
No 297
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=31.69 E-value=1.9e+02 Score=25.17 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=40.2
Q ss_pred CC-EEEEEEcCCCCcHHHHHHHHHhhcCC------C-----CCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 10 GS-KNCVLVLSKRTLISDMKTQIENTLDV------P-----VDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 10 Gk-~~~l~v~~~~~TV~~LK~~I~~~~gi------p-----~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+ ...+++. ..||.+|.+.|.+.+.- . -....+..+|+....+.. .-|++||.|.++-
T Consensus 14 g~~~~~v~~~--~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 14 GKKSEEIEIE--GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred CCceEEEEeC--CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 53 4566664 69999999999987641 0 123567788888765432 4578899999874
No 298
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=31.25 E-value=2.1e+02 Score=25.31 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=39.6
Q ss_pred EEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE--CCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 3 VKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY--KGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 3 I~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif--~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
.+|+..+.. .+=|- . .|+.+|+.+..+.++++....+|+. .|-+++|+.-+.. +.++ |+-|++.
T Consensus 5 ~kv~~~~r~~k~Gv~--A--~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~n-T~lm~L~ 71 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVA--A--SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDN-TVLMLLE 71 (78)
T ss_dssp EEEEETTSSCEEEEE--E--SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSS-EEEEEEE
T ss_pred EEEecCCCCceEeEE--c--CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCC-CEEEEEC
Confidence 456666433 23333 2 6899999999999999988888876 5666665532222 3444 4444443
No 299
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.19 E-value=1.7e+02 Score=32.69 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=47.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+| +|+.+.+. . ..||.+|-+. .+++++..-+..+|+++.-+. ..++-|++||.|.++--..++
T Consensus 1 M~I~V---NGk~~el~--e-~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~-w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 1 MRIRL---NGEPRQVP--A-GLTIAALLAE----LGLAPKKVAVERNLEIVPRSE-YGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CEEEE---CCEEEecC--C-CCcHHHHHHH----cCCCCCeEEEEECCEECCHHH-cCccccCCCCEEEEEEEecCC
Confidence 56655 56665544 3 5788877764 588999999999999996332 334458999999998765544
No 300
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=30.31 E-value=30 Score=30.46 Aligned_cols=28 Identities=36% Similarity=0.840 Sum_probs=22.4
Q ss_pred cCccCCCCCCCCCcEEEe--cCCCcccccccC
Q psy11302 318 GCSICAGKTSPDKLIVCE--ECQHYYHIWCLK 347 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~ 347 (764)
.|..|++. .+..+-|. .|.+.||+.|..
T Consensus 38 ~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 38 KCSICKKK--GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCcCCCCC--CCeEEEEeCCCCCcEEChHHHc
Confidence 48888854 36788887 599999999975
No 301
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=30.19 E-value=55 Score=28.30 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=38.8
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
|++||+|=||=.+.- |+.|+|++....... ...+-.|+|.|-+.. -..-++..+|+|-.
T Consensus 1 f~~GdlVWaK~~g~p-wWPa~V~~~~~~~~~----~~~~~~~~V~Ffg~~--~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYP-WWPARVCDPDEKSKK----KRKDGHVLVRFFGDN--DYAWVKPSNIKPFS 59 (86)
T ss_dssp -STTEEEEEEETTSE-EEEEEEEECCHCTSC----SSSSTEEEEEETTTT--EEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCCCC-CCceEEeeccccccc----CCCCCEEEEEecCCC--CEEEECHHHhhChh
Confidence 789999999986664 999999999755331 245677888885432 23344445555443
No 302
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=30.15 E-value=88 Score=37.20 Aligned_cols=63 Identities=29% Similarity=0.384 Sum_probs=41.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc--CCCC------CCeEEEE--C--Ce-eCCCC-------------cCccccCcCC
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTL--DVPV------DKQRLFY--K--GK-QLEDE-------------YMLFDYNVNL 64 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~--gip~------~~QrLif--~--GK-~L~D~-------------~tL~dy~I~~ 64 (764)
..+.+.|-. .+||.++|++|-... +.|- ++.-|-+ + |. +|+|. .||..|+|.+
T Consensus 202 ~~i~VkVLd-CDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLD-CDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEEEEEET-TSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEEEEEEe-cCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 457888887 999999999998763 3332 3333332 2 33 55554 3799999999
Q ss_pred CCEEEEEEee
Q psy11302 65 NDVIQLMIKA 74 (764)
Q Consensus 65 g~tI~Lvvr~ 74 (764)
|++|.|+.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999998764
No 303
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=29.19 E-value=57 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=20.5
Q ss_pred ccccEEecccCCCCCccccceeeeeEeeecccc
Q psy11302 206 LIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKR 238 (764)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 238 (764)
++|+.|-|..+- ..-+|-||-+.|.+...+.
T Consensus 2 ~~G~~VEV~s~e--~g~~gaWf~a~V~~~~~~~ 32 (68)
T PF05641_consen 2 KKGDEVEVSSDE--DGFRGAWFPATVLKENGDD 32 (68)
T ss_dssp -TT-EEEEEE-S--BTT--EEEEEEEEEEETT-
T ss_pred CCCCEEEEEEcC--CCCCcEEEEEEEEEeCCCc
Confidence 689999998654 4449999999999977654
No 304
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=28.96 E-value=44 Score=30.02 Aligned_cols=29 Identities=28% Similarity=0.661 Sum_probs=20.8
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLK 347 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~ 347 (764)
.|.+|++.-..+... ---|+..||..|..
T Consensus 80 ~C~vC~k~l~~~~f~-~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFV-VFPCGHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCceEE-EeCCCeEEeccccc
Confidence 499999876554333 34566999999975
No 305
>KOG3026|consensus
Probab=28.55 E-value=49 Score=35.05 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=27.4
Q ss_pred ccccccceeeeeecccCcccceeeeeeEec
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVD 157 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~ 157 (764)
+-|+||+.|-|.=.+.|.|+.|.|..|+--
T Consensus 89 ~~w~vg~K~~A~~~ddg~~y~AtIe~ita~ 118 (262)
T KOG3026|consen 89 VGWKVGDKVQAVFSDDGQIYDATIEHITAM 118 (262)
T ss_pred cccccCCEEEEeecCCCceEEeehhhccCC
Confidence 379999999999999999999999999874
No 306
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.54 E-value=46 Score=28.92 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=28.3
Q ss_pred ccccccccccCc----eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 690 LCIICQELVYKP----ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 690 ~C~IC~e~l~~P----vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.|-+|-..+-.- ..-.-.|+||..|.+..+.. . ||.|.-.+..+
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g---~---CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLHG---L---CPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcC---c---CCCCCchhhcC
Confidence 466665544321 11123478999999877753 2 99998887765
No 307
>PRK07440 hypothetical protein; Provisional
Probab=28.53 E-value=3.1e+02 Score=23.40 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
++|+.+.+. . ..||.+|-+. .++++...-+-.+|.++.-+. ..++-+++||.|.++--.
T Consensus 9 vNG~~~~~~--~-~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~~-w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 9 VNGETRTCS--S-GTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQF-WEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ECCEEEEcC--C-CCCHHHHHHH----cCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEEEe
Confidence 357765553 3 5788887763 577888888889999996321 233447889999987543
No 308
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=28.24 E-value=6 Score=34.14 Aligned_cols=42 Identities=29% Similarity=0.576 Sum_probs=22.0
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
++.||.|+..|.. .=+|-+|..|-.. |....+ ||.|..++..
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~-~~~~a~----CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKD-YKKEAF----CPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--E-EEEEEE-----TTT-SB-EE
T ss_pred CCcCCCCCCccEE----eCCEEECcccccc-ceeccc----CCCcccHHHH
Confidence 4689999987542 1278889989664 333334 9999887753
No 309
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=28.20 E-value=52 Score=40.04 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=26.7
Q ss_pred CCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|++|...... ...+|..||..-. ...|-.|+. .+| .+.=||+.|-...
T Consensus 3 ~Cp~Cg~~n~~--~akFC~~CG~~l~---~~~Cp~CG~------------~~~-~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFENPN--NNRFCQKCGTSLT---HKPCPQCGT------------EVP-VDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcCCC--CCccccccCCCCC---CCcCCCCCC------------CCC-cccccccccCCcc
Confidence 57777754211 2234777764321 124555543 356 6667999996543
No 310
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.76 E-value=35 Score=29.17 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=9.6
Q ss_pred cchHhHHHHHHhh
Q psy11302 709 TFCHDCLKRAFKI 721 (764)
Q Consensus 709 ~FC~~CL~~~~~~ 721 (764)
-||+.||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 311
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=26.95 E-value=3.1e+02 Score=24.38 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.1
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE--CCeeCCCCcC
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY--KGKQLEDEYM 56 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif--~GK~L~D~~t 56 (764)
.+|+..+ ++...=|.. .|..+|+.+..+.++++....+|+. .|-.++|+.-
T Consensus 5 ~kV~~~~-r~~k~GV~A--~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeY 57 (78)
T cd01615 5 FKVCDSD-RSRKKGVAA--SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEY 57 (78)
T ss_pred EEEecCC-CCeeEEEEc--CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHH
Confidence 3555553 334444443 7899999999999999766666654 7888766543
No 312
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.77 E-value=1.3e+02 Score=26.54 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=36.0
Q ss_pred Cccccccceeeeeecc------cCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCc
Q psy11302 127 SQYYKVGDYVDAILET------EGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGS 183 (764)
Q Consensus 127 ~g~ykvg~~vD~~d~~------~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 183 (764)
+...|.||+|=+++.. -+.|+.|+|+.+.--+.. +..-.+|.|- +-|+|+
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~----P~~~tlFQVa---dVDtG~ 58 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARD----PKVPTLFQVA---DVDTGV 58 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccC----CCCCceEEEE---EccCCe
Confidence 4578999999988866 579999999999765431 2345667766 345665
No 313
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.77 E-value=36 Score=40.66 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCCCCCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCC
Q psy11302 298 QIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPP 349 (764)
Q Consensus 298 ~~~~~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~Pp 349 (764)
...|||..|+.--...=-...|.-|+.....++ .||.|++.++..+|.-|
T Consensus 124 ~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD--~Ce~Cg~~~~P~~l~~p 173 (558)
T COG0143 124 YEGLYCVSCERFLPDRYVEGTCPKCGGEDARGD--QCENCGRTLDPTELINP 173 (558)
T ss_pred eeeeEcccccccccchheeccCCCcCccccCcc--hhhhccCcCCchhcCCC
Confidence 458999999965322223344777774433322 49999999987776433
No 314
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=26.48 E-value=98 Score=32.99 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=47.0
Q ss_pred EEEEEeCC--CCEE----EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC------eeCCCCcCccccCcCCCCEEE
Q psy11302 2 YVKIRSLD--GSKN----CVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG------KQLEDEYMLFDYNVNLNDVIQ 69 (764)
Q Consensus 2 qI~VKtl~--Gk~~----~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G------K~L~D~~tL~dy~I~~g~tI~ 69 (764)
-||+|-.| .++. .+-|.. +++|.+|-..|.+..|.|++..-++|.= ..|+...|+....|++||+|.
T Consensus 70 LlFlK~fDp~~q~L~~iGh~~v~~-~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~ 148 (249)
T PF12436_consen 70 LLFLKYFDPETQTLRYIGHVYVPK-NDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIIC 148 (249)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEET-T-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEE
T ss_pred EEEEEeeCCCCCEEEEEeEEEECC-CCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEE
Confidence 46777653 2222 445665 8999999999999999999988888853 346788999999999999888
Q ss_pred EEEe
Q psy11302 70 LMIK 73 (764)
Q Consensus 70 Lvvr 73 (764)
+-..
T Consensus 149 fQ~~ 152 (249)
T PF12436_consen 149 FQRA 152 (249)
T ss_dssp EEE-
T ss_pred EEec
Confidence 7653
No 315
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.43 E-value=36 Score=27.17 Aligned_cols=16 Identities=50% Similarity=1.512 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCccCcC
Q psy11302 349 PLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~ 366 (764)
+...+| .+|.||.|..
T Consensus 27 ~F~~Lp--~~w~CP~C~a 42 (47)
T PF00301_consen 27 PFEDLP--DDWVCPVCGA 42 (47)
T ss_dssp -GGGS---TT-B-TTTSS
T ss_pred CHHHCC--CCCcCcCCCC
Confidence 345677 6899999984
No 316
>PRK10306 zinc/cadmium-binding protein; Provisional
Probab=26.30 E-value=85 Score=32.81 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=19.1
Q ss_pred cceeceEEEEEEEEEecCCCCcEEEEEEEee
Q psy11302 553 GNRYDGIYKVVKYYPVKGSSDFIVWRFHLQR 583 (764)
Q Consensus 553 g~rYDGLY~V~~~~~~~g~~g~~v~~f~l~R 583 (764)
-|+|+| |+|..| +.|+.| -||.|.-
T Consensus 127 ~Y~Y~G-~kil~y--~~G~rG---vrylFEa 151 (216)
T PRK10306 127 KYDYDG-YKILTY--ASGKKG---VRYLFEC 151 (216)
T ss_pred EEEECC-EEEEec--cCCCCc---eEEEEEe
Confidence 489999 999999 778777 3455544
No 317
>KOG2114|consensus
Probab=26.26 E-value=21 Score=43.88 Aligned_cols=43 Identities=40% Similarity=0.740 Sum_probs=30.6
Q ss_pred cCccCCCCCCCCCcEEE-ecCCCcccccccCCCCCCCCCCCCCCCccCcCCCccc
Q psy11302 318 GCSICAGKTSPDKLIVC-EECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEV 371 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~C-d~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~ 371 (764)
+|..|... =++..- -.|..+||..|+. +++--||.|+.+...+
T Consensus 842 kCs~C~~~---LdlP~VhF~CgHsyHqhC~e--------~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 842 KCSACEGT---LDLPFVHFLCGHSYHQHCLE--------DKEDKCPKCLPELRGV 885 (933)
T ss_pred eecccCCc---cccceeeeecccHHHHHhhc--------cCcccCCccchhhhhh
Confidence 48889843 233333 4899999999997 5667999999744433
No 318
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.12 E-value=2.4e+02 Score=25.50 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=33.1
Q ss_pred EEEEEeCCCCEEEEEEcCC----CCcHHHHHHHHHhhcCCCC-CCeEEEEC
Q psy11302 2 YVKIRSLDGSKNCVLVLSK----RTLISDMKTQIENTLDVPV-DKQRLFYK 47 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~----~~TV~~LK~~I~~~~gip~-~~QrLif~ 47 (764)
.|+|+. +|....|.+... +.+..+|+++|++.+++++ ....|-|.
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 355544 566778887742 6899999999999999988 44455554
No 319
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.06 E-value=2e+02 Score=25.24 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=39.2
Q ss_pred EEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCe
Q psy11302 5 IRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGK 49 (764)
Q Consensus 5 VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK 49 (764)
|-.+||+...+.+.| -.||.++-.++.++.|+.++.--+|.-|.
T Consensus 4 V~LPdg~~T~V~vrp-G~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRP-GESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecC-CCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 446789999999998 99999999999999999999988887764
No 320
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.05 E-value=1.9e+02 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=33.6
Q ss_pred EEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE
Q psy11302 5 IRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY 46 (764)
Q Consensus 5 VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif 46 (764)
++...|.+..+.|.. +.|..+|+.++++.++++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r-~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDR-SISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcC-CCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 566788999999996 99999999999999999876 55544
No 321
>PF14353 CpXC: CpXC protein
Probab=24.97 E-value=50 Score=31.24 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=29.5
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+++||-|...+...+-+.-.-..=..=.+..+...-+ ...||.|.+.+...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~-~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLF-SFTCPSCGHKFRLE 51 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcC-EEECCCCCCceecC
Confidence 3689999988776665433322223333334433322 35599999887654
No 322
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.79 E-value=56 Score=34.88 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=27.0
Q ss_pred CeEEEEEeCCCCCCCcccccccccccCcccccccccccccccEEecccCCCCCccccceeee
Q psy11302 168 DLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDM 229 (764)
Q Consensus 168 ~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 229 (764)
..+|.|.|| |++= ....+||.||-++- |+|.||||++
T Consensus 132 ~~~ylvlfd-~~d~----~d~~~IRi~~W~Vd--------------------~~e~G~~~cl 168 (314)
T PF09567_consen 132 RMIYLVLFD-FPDF----SDSNDIRIRIWEVD--------------------PQEDGFAYCL 168 (314)
T ss_pred cEEEEEEec-ccCC----CCcccceEEEEEec--------------------cCCCcceeeh
Confidence 367777766 6442 44589998887765 8888999984
No 323
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=24.79 E-value=55 Score=25.84 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=22.8
Q ss_pred cccccccccC--ceecCCCCc-----chHhHHHHHHhhcCCCcCCCccc
Q psy11302 691 CIICQELVYK--PITLDCVHT-----FCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 691 C~IC~e~l~~--Pvtt~CgH~-----FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
|-||++.-.. |+..||... .-..||.+|+..+.. ..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~--~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGN--RKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCC--CcCCCC
Confidence 5678765442 577787642 356799999997542 238876
No 324
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=24.72 E-value=39 Score=30.72 Aligned_cols=38 Identities=29% Similarity=0.745 Sum_probs=28.2
Q ss_pred ccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.-.|.||...+.++ ||.||..|- ++.+ . |.+|-..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CA---YkkG--i---CamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCA---YKKG--I---CAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhh---cccC--c---ccccCCeecc
Confidence 34699999876654 889999993 3333 3 9999988854
No 325
>KOG1844|consensus
Probab=24.25 E-value=41 Score=39.29 Aligned_cols=50 Identities=24% Similarity=0.530 Sum_probs=39.5
Q ss_pred cCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCcccc
Q psy11302 321 ICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSEVI 372 (764)
Q Consensus 321 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~~~ 372 (764)
.|+..++ .+.++.|+.|..+=|.+|+...-...| ....|..|....-.+.
T Consensus 90 ~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p--~~y~c~~c~~~~~~~~ 140 (508)
T KOG1844|consen 90 DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKP--DKYVCEICTPRNKEVE 140 (508)
T ss_pred ccccccCCCceeeCCcccCcccCceeeeecCCCCc--hhceeeeeccccccch
Confidence 4666667 889999999999999999987655555 5678999987665544
No 326
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=23.84 E-value=2.3e+02 Score=24.48 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=33.5
Q ss_pred EEEEeCCCC----EEEEEEcCCCCcHHHHHHHHHhhcCC--CCCCeEEE
Q psy11302 3 VKIRSLDGS----KNCVLVLSKRTLISDMKTQIENTLDV--PVDKQRLF 45 (764)
Q Consensus 3 I~VKtl~Gk----~~~l~v~~~~~TV~~LK~~I~~~~gi--p~~~QrLi 45 (764)
|+|-..++. ..+|.|.+ ++|+.++-+.+.+++++ .+..-.|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~-~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSS-STTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEET-TSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECC-CCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 556666666 77999997 99999999999999998 45555664
No 327
>KOG4248|consensus
Probab=23.74 E-value=62 Score=40.90 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=54.9
Q ss_pred EeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 6 RSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 6 Ktl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
+++....+...+.. ..++...|.+|.++.|||...++|+|-|..+.+++.+..|+...+...+..++.+
T Consensus 330 ~~l~~p~~~~~~~~-~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~asp 398 (1143)
T KOG4248|consen 330 CNLACPPPRHLHVV-RPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASP 398 (1143)
T ss_pred hcccCCCCceeeec-chhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCc
Confidence 34444555544454 6788888999999999999999999999999999999988888877777765443
No 328
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.52 E-value=2.7e+02 Score=24.72 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=40.4
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEE--EECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRL--FYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrL--if~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
++|++.+.. ...-|.. .|..+|+.+..+.++++....+| --.|-+++|+.-+.. +.++..+.++
T Consensus 5 fkV~~~~r~-~k~GV~A--~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L 70 (78)
T cd06539 5 FRVSNHDRS-SRRGVMA--SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVL 70 (78)
T ss_pred EEEecCCCC-ceEEEEe--cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEE
Confidence 456666443 3334443 68999999999999998655555 457777766543322 4445544443
No 329
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=23.46 E-value=2.8e+02 Score=25.06 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=34.3
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeE
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQR 43 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~Qr 43 (764)
|+|-..||...+|.|+. +.|+.++-+.++.+..+..+.-.
T Consensus 5 vkv~~~Dg~sK~l~V~~-~~Ta~dV~~~L~~K~h~~~~~~W 44 (85)
T cd01787 5 VKVYSEDGASKSLEVDE-RMTARDVCQLLVDKNHCQDDSSW 44 (85)
T ss_pred EEEEecCCCeeEEEEcC-CCcHHHHHHHHHHHhCCCCCCCe
Confidence 67777899999999998 99999999999999887655444
No 330
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=23.29 E-value=1.2e+02 Score=27.25 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=32.2
Q ss_pred cccceeeeeeEec-CCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccC--cccccccccccccccEEec
Q psy11302 145 AWFESQITHILVD-INKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPL--PKHLITEFNENLIGVRVMG 213 (764)
Q Consensus 145 aWfea~i~~i~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~r--a~~~~~~~~~l~~~~~~~~ 213 (764)
.|.+++|.++.+. ..+| +++.++- +++.+ +.--.|+. ++.+. .+|++||.|.+
T Consensus 1 ~~v~GeVs~~~~~~~sGH-------~yFtlkD----~~~~i--~cv~f~~~g~~~~~~---~~l~~Gd~V~v 56 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGH-------VFFKISD----GTGEI--DCAAYEPTKEFRDVV---RLLIPGDEVTV 56 (91)
T ss_pred CEEEEEEeCCeecCCCCC-------EEEEEEC----CCcEE--EEEEECccccccccc---CCCCCCCEEEE
Confidence 5899999999885 3332 5555652 33333 33334555 55554 35899998864
No 331
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.24 E-value=81 Score=25.70 Aligned_cols=25 Identities=40% Similarity=1.018 Sum_probs=14.2
Q ss_pred CCCCcchHhHHHHHHhhcCCCcCCCcccc
Q psy11302 705 DCVHTFCHDCLKRAFKIESDACNSCPYCR 733 (764)
Q Consensus 705 ~CgH~FC~~CL~~~~~~~~~~~~~CP~CR 733 (764)
.|++.||..| ..|..... ..||-|.
T Consensus 26 ~C~~~FC~dC--D~fiHE~L--H~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDC--DVFIHETL--HNCPGCE 50 (51)
T ss_dssp TTT--B-HHH--HHTTTTTS---SSSTT-
T ss_pred CCCCccccCc--Chhhhccc--cCCcCCC
Confidence 6999999999 45555443 2499883
No 332
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=23.03 E-value=1.3e+02 Score=28.89 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=42.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCcccc---CcCCCCEEEEEE
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDY---NVNLNDVIQLMI 72 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy---~I~~g~tI~Lvv 72 (764)
+..-+-|.. +.||++|...|....++++++.-|+.++.++..+.++++. --.++-.+.+..
T Consensus 41 K~KfllVP~-d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 41 KVHFLALPR-DATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred ceEEEEcCC-CCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 333334555 9999999999999999999996666677666777776652 113344666665
No 333
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=22.86 E-value=1.4e+02 Score=26.42 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG 48 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G 48 (764)
++.+.+.+ -.+..+|..+|++++..+++.-.|-|.-
T Consensus 8 TVai~v~~-g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPR-GADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccC-CCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 46777776 9999999999999999999999999864
No 334
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=22.84 E-value=81 Score=35.30 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=16.5
Q ss_pred cccC-CCceEEEeccCC-CCCCCCCCCcc
Q psy11302 527 DWKK-GKPVRVMRNFHG-AKHSKYAPKEG 553 (764)
Q Consensus 527 s~~~-~~pVRViR~~~~-~~~s~~ap~~g 553 (764)
.|.+ ...|||-|..-. .+||+..-..|
T Consensus 58 ~w~~~~ri~rvsRasg~KDRHSKI~Ta~G 86 (447)
T PLN03106 58 RWHHSSRIIRVSRASGGKDRHSKVLTSKG 86 (447)
T ss_pred ccccCCceeeeecccCCCCcccceecccC
Confidence 4666 788999887632 24666543333
No 335
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=22.82 E-value=4.4e+02 Score=22.62 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=43.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.++|.. +|+...+ .. ..|+++|-.. .++++..--+..+|.++..+. -.+.-+++||.|.++-
T Consensus 1 ~~m~i~~-ng~~~e~--~~-~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 1 MPMTIQL-NGKEVEI--AE-GTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred CcEEEEE-CCEEEEc--CC-CCcHHHHHHH----hCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 3344433 3665544 43 5899998876 578888888999999997533 2344478889888874
No 336
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=22.57 E-value=43 Score=32.14 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=8.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCccccccc-ccccCccccccccccccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFD-DIRPLPKHLITEFNENLI 207 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~ir~ra~~~~~~~~~l~~ 207 (764)
--|+||.|=|+|...|.+-.-.|..++.. +.+-+++|..++ ..+.+... -+--..+.-+ +=.+|++
T Consensus 13 ~I~~GD~Vls~d~~tg~~~~~~V~~~f~~--------~~~~l~~i~~~~----~~i~~T~~HPF~~~~~gWv-~A~~L~~ 79 (130)
T PF07591_consen 13 DIKVGDRVLSYDEETGETEYKPVTATFVR--------ETDELVDITLED----ETITTTPNHPFWVEGKGWV-EAEDLKV 79 (130)
T ss_dssp -----------------------------------------------------------------------E-EGGG--T
T ss_pred ccccccccccccccccccccccccccccc--------cccccccccccc----cccccccccccccchHhhh-hHhhCCC
Confidence 45799999999999999888777777765 345677787664 22222110 0111113344 5578999
Q ss_pred ccEEe
Q psy11302 208 GVRVM 212 (764)
Q Consensus 208 ~~~~~ 212 (764)
||.+.
T Consensus 80 GD~L~ 84 (130)
T PF07591_consen 80 GDRLL 84 (130)
T ss_dssp TSEEE
T ss_pred CCEEE
Confidence 99984
No 337
>KOG1428|consensus
Probab=22.28 E-value=14 Score=47.61 Aligned_cols=38 Identities=26% Similarity=0.681 Sum_probs=26.1
Q ss_pred cCCCcccccccCCCCCC------CCCCCCCCCccCcCCCcccccc
Q psy11302 336 ECQHYYHIWCLKPPLES------VPEDDEWFCPSCKRDTSEVIAP 374 (764)
Q Consensus 336 ~C~~~~H~~Cl~PpL~~------~P~~g~W~C~~C~~~~~~~~~~ 374 (764)
.|...||+.|+.--|+. +- -|--.||-|.++.+-.+..
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRIt-F~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRIT-FGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeE-EeeeecccccchhhhHHHH
Confidence 69999999997644432 11 3455799999877655443
No 338
>KOG2561|consensus
Probab=22.18 E-value=52 Score=37.95 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 21 RTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 21 ~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.-|-.+|...|+.++||+-+..+.|-+||+|+-.+||.+-|++.+..+.+++
T Consensus 59 ~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 59 HITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred ccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 4566789999999999999999999999999999999999998776555544
No 339
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=22.08 E-value=59 Score=30.05 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=21.3
Q ss_pred CccccccceeeeeecccCcccc-----------eeeeeeEecCCCCCCCCCCCeEEEEEeC
Q psy11302 127 SQYYKVGDYVDAILETEGAWFE-----------SQITHILVDINKEKPYDEDDLIFKVVHL 176 (764)
Q Consensus 127 ~g~ykvg~~vD~~d~~~gaWfe-----------a~i~~i~~~~~~~~~~~~~~~~y~~~~~ 176 (764)
..-|++||+||.. ..++.=. +.|.+|++-. -.++|.++..
T Consensus 30 l~~yk~GD~V~I~--id~sv~kGmPh~~yHGkTG~V~~v~~~~--------~G~~~~~~v~ 80 (99)
T PF01157_consen 30 LQEYKVGDKVDIK--IDPSVHKGMPHKRYHGKTGRVFNVTKGA--------RGVAYNKQVK 80 (99)
T ss_dssp H----TT-EEEE-----TTSSSSS--GGGTTEEEEEEEE-SSC--------EEEEEEEECS
T ss_pred HHHccCCCEEEEE--ecCccccCCCcceECCCceeEEEeCCCc--------eEEEEEEEec
Confidence 3689999999985 4555533 5677777764 3478888764
No 340
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.57 E-value=76 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=20.7
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWC 345 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~C 345 (764)
|.+|++..++...=.|+.|.-..|..|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 888887655443777899998888877
No 341
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=21.52 E-value=41 Score=29.84 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCCcCCcCCccCCCccCccCCCCCC--CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKTS--PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~~--~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.-|+..-... |..|..+-. ++-.+.=..|..+||..|..--|.+. =.||.++..
T Consensus 22 ~CaICRnhim~~-----C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-----~~CPld~q~ 79 (88)
T COG5194 22 VCAICRNHIMGT-----CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-----GVCPLDRQT 79 (88)
T ss_pred hhhhhhccccCc-----CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-----CCCCCCCce
Confidence 466666654443 445554222 22333446899999999988666652 378888743
No 342
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=21.46 E-value=1.2e+02 Score=26.50 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=43.8
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~ 199 (764)
|++||+|=||=.++ -|+.|.|++....+..- .....+-.|+|.|-+ ++...-++.++|+|-.....
T Consensus 1 f~~GdlVwaK~~g~-pwWPa~V~~~~~~~~~~-~~~~~~~~~~V~Ffg--~~~~~wv~~~~l~pf~~~~~ 66 (87)
T cd05162 1 FRPGDLVWAKMKGY-PWWPALVVDPPKDSKKA-KKKAKEGKVLVLFFG--DKTFAWVGAERLKPFTEHKE 66 (87)
T ss_pred CCCCCEEEEeCCCC-CCCCEEEccccccchhh-hccCCCCEEEEEEeC--CCcEEEeCccceeeccchHH
Confidence 68999999998666 69999999998764311 011234688999865 34444455666666555444
No 343
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=21.40 E-value=3.2e+02 Score=24.26 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE-CCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 10 GSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY-KGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 10 Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif-~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+..+.+.... ..||+++-+ ..|+|..+.-+|+ +|+...- +|-+++||.|.+.
T Consensus 22 ~~~~~~~~~~-~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDG-GATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCC-CCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 4456777776 899887765 4799999997765 8887664 3567889999886
No 344
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.35 E-value=66 Score=29.91 Aligned_cols=29 Identities=31% Similarity=0.714 Sum_probs=21.0
Q ss_pred CCcchHhHHHHHHhhcC-----CCcCCCcccccc
Q psy11302 707 VHTFCHDCLKRAFKIES-----DACNSCPYCRKE 735 (764)
Q Consensus 707 gH~FC~~CL~~~~~~~~-----~~~~~CP~CR~~ 735 (764)
.-.||..||...+.... ...+.||.||-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 67799999988876432 123779999863
No 345
>KOG4185|consensus
Probab=21.10 E-value=31 Score=37.36 Aligned_cols=44 Identities=30% Similarity=0.762 Sum_probs=33.1
Q ss_pred ccccccccccc------CceecC--------CCCcchHhHHHHHHhhcCCCcCCCcccccc
Q psy11302 689 FLCIICQELVY------KPITLD--------CVHTFCHDCLKRAFKIESDACNSCPYCRKE 735 (764)
Q Consensus 689 ~~C~IC~e~l~------~Pvtt~--------CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~ 735 (764)
-.|.||...+. .|..+. |||+.|..|+...+...... ||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~---cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIK---CPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhc---CCcccce
Confidence 45778876554 355566 99999999999987765544 9999864
No 346
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=21.01 E-value=4.8e+02 Score=22.54 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=32.8
Q ss_pred EEEcCCCCcHHHHHHHHHhhcC-----CCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 15 VLVLSKRTLISDMKTQIENTLD-----VPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 15 l~v~~~~~TV~~LK~~I~~~~g-----ip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+++.....||.+|++.|.+++. ......++.-++....+ +.-|++||.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 4444324899999999988762 12233344556654333 3347889999887
No 347
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.97 E-value=59 Score=25.68 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=22.3
Q ss_pred CccCCCCC--CCCCcEEEecCCCcccccccC
Q psy11302 319 CSICAGKT--SPDKLIVCEECQHYYHIWCLK 347 (764)
Q Consensus 319 C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~ 347 (764)
|.+|++.- ....-+.|..|....|-.|+.
T Consensus 14 C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 14 CDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp -TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 77777654 456789999999999999986
No 348
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=20.73 E-value=56 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=39.9
Q ss_pred ccceeeeeecccCcccceeeeeeEecCCCCC---------------------------CCCCCCeEEEEEeCCCCCCCcc
Q psy11302 132 VGDYVDAILETEGAWFESQITHILVDINKEK---------------------------PYDEDDLIFKVVHLKYKDDGSS 184 (764)
Q Consensus 132 vg~~vD~~d~~~gaWfea~i~~i~~~~~~~~---------------------------~~~~~~~~y~~~~~~~~~~~~~ 184 (764)
|.++|+....--..|-+|+|.+++....++- ..+.+.++-+.+.+-|+-.|-.
T Consensus 11 ik~~le~~~~~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~ 90 (99)
T PF13742_consen 11 IKDLLERDPPLPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSL 90 (99)
T ss_pred HHHHHhcCCCcCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEE
Confidence 4445554433367899999999998644431 1234556666666667777777
Q ss_pred ccccccccc
Q psy11302 185 TMKFDDIRP 193 (764)
Q Consensus 185 ~~~~~~ir~ 193 (764)
++...+|||
T Consensus 91 sl~v~~i~P 99 (99)
T PF13742_consen 91 SLIVEDIDP 99 (99)
T ss_pred EEEEEEeEC
Confidence 777777776
No 349
>KOG4250|consensus
Probab=20.71 E-value=1.8e+02 Score=35.70 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCC
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLE 52 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~ 52 (764)
+...+.+-+.+ +.|+..|++.|...+|+|...|-|+|.|...-
T Consensus 323 ~~~~~~~~~~~-~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 323 QATSHEYYVHA-DNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred cceEEEEecCh-hhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 55667888887 99999999999999999999999999976553
No 350
>KOG3391|consensus
Probab=20.30 E-value=94 Score=30.33 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.5
Q ss_pred eeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 49 KQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 49 K~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|..+|++||...+++-||.|.+.+..+...
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p~~~ 141 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPPNRR 141 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCcccC
Confidence 455889999999999999999999776544
No 351
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=20.23 E-value=74 Score=32.18 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=16.9
Q ss_pred CcEEEecCCCcccccccCCCC
Q psy11302 330 KLIVCEECQHYYHIWCLKPPL 350 (764)
Q Consensus 330 ~ll~Cd~C~~~~H~~Cl~PpL 350 (764)
.|.-|..|.++||+.-|-|+-
T Consensus 123 VLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 123 VLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred eEEecCCccceeehhhCCCCc
Confidence 455599999999999986653
Done!