Query psy11302
Match_columns 764
No_of_seqs 708 out of 3599
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:28:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oln_A E3 ubiquitin-protein li 100.0 4.6E-86 1.6E-90 666.2 18.1 229 391-619 2-231 (231)
2 2pb7_A E3 ubiquitin-protein li 100.0 1.6E-78 5.5E-83 615.0 17.5 223 406-628 1-223 (239)
3 3fde_A E3 ubiquitin-protein li 100.0 6.1E-78 2.1E-82 602.9 19.5 209 414-623 2-210 (212)
4 3ask_A E3 ubiquitin-protein li 100.0 2.3E-69 7.9E-74 549.3 19.0 224 128-367 1-225 (226)
5 3db3_A E3 ubiquitin-protein li 100.0 8.9E-65 3E-69 480.8 12.1 146 123-273 4-157 (161)
6 3q0b_X Histone-lysine N-methyl 100.0 2.8E-57 9.7E-62 443.5 14.2 159 417-592 1-164 (167)
7 3fl2_A E3 ubiquitin-protein li 99.8 1.4E-19 4.8E-24 169.0 7.5 114 647-764 5-124 (124)
8 1z6u_A NP95-like ring finger p 99.8 1.5E-19 5.2E-24 174.8 7.8 120 640-764 30-150 (150)
9 2e6s_A E3 ubiquitin-protein li 99.8 9.2E-19 3.2E-23 150.7 7.9 73 292-366 3-76 (77)
10 3asl_A E3 ubiquitin-protein li 99.7 5.7E-18 1.9E-22 143.3 5.6 67 300-367 2-69 (70)
11 3phx_B Ubiquitin-like protein 99.7 3E-17 1E-21 140.8 10.0 74 1-75 5-78 (79)
12 3shb_A E3 ubiquitin-protein li 99.7 7.8E-18 2.7E-22 144.8 5.5 69 297-366 7-76 (77)
13 4fbj_B NEDD8; effector-HOST ta 99.7 3E-17 1E-21 144.5 9.3 79 1-80 1-79 (88)
14 4dwf_A HLA-B-associated transc 99.7 3.3E-17 1.1E-21 144.2 9.6 75 1-77 6-80 (90)
15 3m62_B UV excision repair prot 99.7 1.5E-17 5.3E-22 151.6 7.7 76 1-77 2-77 (106)
16 3plu_A Ubiquitin-like modifier 99.7 4.3E-17 1.5E-21 144.4 9.3 71 1-72 22-92 (93)
17 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.2E-16 4.2E-21 142.1 10.2 78 1-79 2-79 (96)
18 2lxa_A Ubiquitin-like protein 99.7 9.1E-17 3.1E-21 141.6 7.8 73 1-74 2-78 (87)
19 1uel_A HHR23B, UV excision rep 99.7 4E-16 1.4E-20 139.2 11.9 75 1-76 1-78 (95)
20 2kk8_A Uncharacterized protein 99.7 1.3E-16 4.5E-21 139.5 8.5 72 1-73 11-83 (84)
21 2faz_A Ubiquitin-like containi 99.7 2.6E-16 8.8E-21 134.6 9.2 74 1-75 3-78 (78)
22 1ndd_A NEDD8, protein (ubiquit 99.7 3.6E-16 1.2E-20 132.1 9.9 75 1-76 1-75 (76)
23 2uyz_B Small ubiquitin-related 99.7 1.9E-16 6.4E-21 135.9 8.2 75 1-76 4-78 (79)
24 4a20_A Ubiquitin-like protein 99.6 2.3E-16 8E-21 141.9 8.8 74 1-75 20-97 (98)
25 3v6c_B Ubiquitin; structural g 99.6 2.7E-16 9.2E-21 138.9 9.1 73 1-74 18-90 (91)
26 1uh6_A Ubiquitin-like 5; beta- 99.6 1.6E-16 5.3E-21 143.2 7.5 71 1-72 29-99 (100)
27 3dbh_I NEDD8; cell cycle, acti 99.6 2.6E-16 8.9E-21 137.4 8.2 75 1-76 13-87 (88)
28 1wy8_A NP95-like ring finger p 99.6 6.9E-16 2.4E-20 135.3 10.7 77 1-78 8-86 (89)
29 2wyq_A HHR23A, UV excision rep 99.6 6E-16 2E-20 134.3 10.1 75 1-76 6-83 (85)
30 3a9j_A Ubiquitin; protein comp 99.6 7.4E-16 2.5E-20 130.2 10.3 75 1-76 1-75 (76)
31 1wgh_A Ubiquitin-like 3, HCG-1 99.6 9.4E-16 3.2E-20 141.9 11.7 77 1-78 17-103 (116)
32 1wyw_B Ubiquitin-like protein 99.6 3.6E-16 1.2E-20 140.1 8.5 75 1-76 22-96 (97)
33 4hcn_B Polyubiquitin, ubiquiti 99.6 5E-16 1.7E-20 139.3 9.4 75 1-76 23-97 (98)
34 4eew_A Large proline-rich prot 99.6 5.7E-16 2E-20 135.7 9.3 71 1-73 18-88 (88)
35 3n3k_B Ubiquitin; hydrolase, p 99.6 5.2E-16 1.8E-20 134.4 8.8 77 1-78 4-80 (85)
36 2kan_A Uncharacterized protein 99.6 8.1E-16 2.8E-20 137.2 9.7 76 1-78 16-92 (94)
37 1sif_A Ubiquitin; hydrophobic 99.6 7.4E-16 2.5E-20 135.6 9.2 76 1-77 10-85 (88)
38 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 1E-15 3.4E-20 133.6 10.0 76 1-77 8-83 (87)
39 2hj8_A Interferon-induced 17 k 99.6 4.6E-16 1.6E-20 136.8 7.7 77 1-78 5-81 (88)
40 3mtn_B UBA80, ubcep1, ubiquiti 99.6 9.4E-16 3.2E-20 132.6 9.3 76 1-77 4-79 (85)
41 1wgd_A Homocysteine-responsive 99.6 9.6E-16 3.3E-20 136.0 9.1 77 1-78 8-90 (93)
42 1ttn_A DC-UBP, dendritic cell- 99.6 8.8E-16 3E-20 139.8 8.8 76 1-77 24-99 (106)
43 1wx7_A Ubiquilin 3; ubiquitin- 99.6 1.7E-15 5.8E-20 137.8 10.6 76 1-78 18-93 (106)
44 1wia_A Hypothetical ubiquitin- 99.6 1.5E-15 5.2E-20 135.2 10.1 73 1-77 8-81 (95)
45 2dzi_A Ubiquitin-like protein 99.6 1.2E-15 4E-20 131.0 8.9 73 1-74 8-80 (81)
46 1yx5_B Ubiquitin; proteasome, 99.6 1.9E-15 6.6E-20 135.3 10.4 78 1-79 1-78 (98)
47 1v2y_A 3300001G02RIK protein; 99.6 6.3E-16 2.1E-20 140.7 6.0 76 1-77 8-99 (105)
48 1se9_A Ubiquitin family; ubiqu 99.6 3.1E-15 1.1E-19 140.0 10.4 77 1-78 17-107 (126)
49 3vdz_A Ubiquitin-40S ribosomal 99.6 2.5E-15 8.7E-20 138.0 9.7 75 1-76 36-110 (111)
50 1wju_A NEDD8 ultimate buster-1 99.6 2.6E-15 8.8E-20 135.3 9.4 74 2-77 17-94 (100)
51 3b1l_X E3 ubiquitin-protein li 99.4 1E-16 3.4E-21 136.3 0.0 75 1-76 1-75 (76)
52 2gow_A HCG-1 protein, ubiquiti 99.6 3.9E-15 1.3E-19 139.6 10.2 76 1-77 18-103 (125)
53 2bwf_A Ubiquitin-like protein 99.6 4.7E-15 1.6E-19 126.0 9.6 72 1-74 5-76 (77)
54 3l0w_B Monoubiquitinated proli 99.6 5.9E-15 2E-19 145.4 11.2 77 1-78 1-77 (169)
55 2l7r_A Ubiquitin-like protein 99.6 3.1E-15 1E-19 133.1 8.2 73 1-76 20-92 (93)
56 1yqb_A Ubiquilin 3; structural 99.6 4.8E-15 1.6E-19 133.7 8.7 75 1-77 23-97 (100)
57 1wx8_A Riken cDNA 4931431F19; 99.6 3E-15 1E-19 133.4 7.0 75 1-77 18-92 (96)
58 1v5o_A 1700011N24RIK protein; 99.6 7.1E-15 2.4E-19 132.9 9.1 77 1-78 8-89 (102)
59 2klc_A Ubiquilin-1; ubiquitin- 99.6 8.9E-15 3.1E-19 132.1 9.7 74 1-76 26-99 (101)
60 2fnj_B Transcription elongatio 99.6 4.6E-15 1.6E-19 137.3 8.0 72 1-73 1-80 (118)
61 2ojr_A Ubiquitin; lanthide-bin 99.5 1.6E-14 5.4E-19 132.6 10.4 75 1-76 36-110 (111)
62 3rt3_B Ubiquitin-like protein 99.5 1.1E-14 3.7E-19 141.2 9.9 76 1-77 82-157 (159)
63 2kdi_A Ubiquitin, vacuolar pro 99.5 1.7E-14 5.7E-19 133.3 10.5 77 1-78 10-86 (114)
64 1j8c_A Ubiquitin-like protein 99.5 1.3E-14 4.6E-19 136.0 9.8 76 1-78 33-108 (125)
65 4ajy_B Transcription elongatio 99.5 1.2E-14 4.2E-19 134.1 8.9 74 1-75 1-82 (118)
66 3q3f_A Ribonuclease/ubiquitin 99.5 9.7E-15 3.3E-19 146.1 8.5 77 1-78 106-182 (189)
67 2kdb_A Homocysteine-responsive 99.5 7.7E-15 2.6E-19 132.3 6.7 70 1-71 24-99 (99)
68 3u5c_f 40S ribosomal protein S 99.5 1.3E-15 4.4E-20 147.5 0.8 77 1-78 1-77 (152)
69 3u5e_m 60S ribosomal protein L 99.5 1E-15 3.5E-20 144.0 0.0 77 1-78 1-77 (128)
70 1we6_A Splicing factor, putati 99.5 1.9E-14 6.4E-19 132.0 8.2 78 1-78 28-108 (111)
71 1wgg_A Ubiquitin carboxyl-term 99.5 3E-14 1E-18 127.6 9.0 72 1-75 8-80 (96)
72 1x1m_A Ubiquitin-like protein 99.5 3E-14 1E-18 130.0 9.0 75 1-76 13-102 (107)
73 4dbg_A Ranbp-type and C3HC4-ty 99.5 4E-14 1.4E-18 128.5 9.3 72 1-73 25-99 (105)
74 3rt3_B Ubiquitin-like protein 99.5 5.8E-14 2E-18 136.1 9.9 72 1-73 3-76 (159)
75 3u30_A Ubiquitin, linear DI-ub 99.5 5.8E-14 2E-18 138.1 9.9 75 1-76 21-95 (172)
76 2daf_A FLJ35834 protein; hypot 99.5 8E-14 2.7E-18 128.1 9.8 76 1-77 16-92 (118)
77 3m63_B Ubiquitin domain-contai 99.5 1.5E-14 5.1E-19 130.7 4.6 72 1-74 29-100 (101)
78 1oqy_A HHR23A, UV excision rep 99.5 1.3E-13 4.3E-18 151.1 12.0 76 1-77 8-87 (368)
79 1v5t_A 8430435I17RIK protein; 99.5 7E-14 2.4E-18 123.6 7.9 71 1-73 8-82 (90)
80 1wxv_A BAG-family molecular ch 99.5 1.2E-13 3.9E-18 122.3 9.0 72 1-74 8-85 (92)
81 3u30_A Ubiquitin, linear DI-ub 99.4 9.2E-14 3.1E-18 136.7 8.0 75 1-76 97-171 (172)
82 1we7_A SF3A1 protein; structur 99.4 1.9E-13 6.4E-18 126.2 9.5 77 1-78 26-112 (115)
83 3b08_A Polyubiquitin-C, ubiqui 99.4 2.4E-13 8.1E-18 129.9 10.2 74 1-75 1-74 (152)
84 3b08_A Polyubiquitin-C, ubiqui 99.4 2.4E-13 8.2E-18 129.8 10.0 75 1-76 77-151 (152)
85 2kd0_A LRR repeats and ubiquit 99.4 2.8E-13 9.5E-18 118.5 9.1 70 3-73 14-83 (85)
86 1v86_A DNA segment, CHR 7, way 99.4 1.1E-13 3.9E-18 123.5 4.8 70 1-73 18-87 (95)
87 2xzm_9 RPS31E; ribosome, trans 99.4 3.3E-14 1.1E-18 141.6 1.5 74 1-80 1-74 (189)
88 2dzm_A FAS-associated factor 1 99.4 3.6E-13 1.2E-17 121.6 7.7 71 1-73 9-81 (100)
89 2dzj_A Synaptic glycoprotein S 99.4 2.3E-13 7.9E-18 120.0 5.8 69 1-70 11-85 (88)
90 2e6r_A Jumonji/ARID domain-con 99.4 1.6E-13 5.6E-18 122.0 2.5 55 310-365 9-64 (92)
91 1f62_A Transcription factor WS 99.3 3.1E-13 1.1E-17 107.0 3.5 48 318-366 2-49 (51)
92 1t1h_A Gspef-atpub14, armadill 99.3 3.1E-13 1E-17 115.5 3.5 68 685-757 5-72 (78)
93 2kwj_A Zinc finger protein DPF 99.3 3.3E-13 1.1E-17 124.6 4.0 68 297-365 31-106 (114)
94 3ai5_A Yeast enhanced green fl 99.3 1.4E-12 4.7E-17 139.3 9.0 73 1-74 234-306 (307)
95 2kjr_A CG11242; UBL, ubiquitin 99.3 5.2E-12 1.8E-16 113.0 8.9 70 1-71 16-93 (95)
96 3ztg_A E3 ubiquitin-protein li 99.3 1.5E-12 5.3E-17 114.6 5.4 72 683-758 8-81 (92)
97 2lri_C Autoimmune regulator; Z 99.3 9.9E-13 3.4E-17 109.8 3.7 48 316-367 12-59 (66)
98 2kr4_A Ubiquitin conjugation f 99.3 1.9E-12 6.4E-17 113.3 5.3 69 683-757 9-77 (85)
99 1wf9_A NPL4 family protein; be 99.3 2.3E-12 7.7E-17 117.6 5.8 71 1-73 8-94 (107)
100 4b6w_A Tubulin-specific chaper 99.3 4.2E-12 1.4E-16 111.5 7.2 66 8-74 12-84 (86)
101 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.8E-12 6.2E-17 106.6 4.6 48 315-366 8-55 (61)
102 1fp0_A KAP-1 corepressor; PHD 99.3 2.5E-12 8.5E-17 112.8 5.4 49 315-367 24-72 (88)
103 3v43_A Histone acetyltransfera 99.3 2.4E-12 8E-17 118.5 5.4 56 310-366 54-111 (112)
104 3lrq_A E3 ubiquitin-protein li 99.3 2.6E-12 9E-17 115.4 5.0 70 680-754 14-84 (100)
105 2kre_A Ubiquitin conjugation f 99.3 2.2E-12 7.7E-17 116.3 4.5 73 684-762 25-97 (100)
106 2io1_B Small ubiquitin-related 99.3 1.1E-11 3.9E-16 110.5 8.7 76 1-77 8-83 (94)
107 2ckl_A Polycomb group ring fin 99.2 6E-12 2E-16 114.4 6.1 75 682-760 9-86 (108)
108 1wgm_A Ubiquitin conjugation f 99.2 5.3E-12 1.8E-16 113.5 5.3 68 684-757 18-86 (98)
109 1xwh_A Autoimmune regulator; P 99.2 2.6E-12 9E-17 107.3 3.1 47 315-365 7-53 (66)
110 2y43_A E3 ubiquitin-protein li 99.2 6E-12 2.1E-16 112.5 5.4 70 681-756 15-85 (99)
111 2kj6_A Tubulin folding cofacto 99.2 1.7E-11 5.9E-16 110.0 7.8 70 2-72 16-94 (97)
112 2ysm_A Myeloid/lymphoid or mix 99.2 5.3E-12 1.8E-16 115.8 4.6 55 311-366 48-103 (111)
113 2yql_A PHD finger protein 21A; 99.2 4.1E-12 1.4E-16 102.7 3.1 47 315-365 8-54 (56)
114 2puy_A PHD finger protein 21A; 99.2 2.5E-12 8.7E-17 105.3 1.5 47 315-365 4-50 (60)
115 1wev_A Riken cDNA 1110020M19; 99.2 2.9E-12 1E-16 113.0 2.0 50 315-365 15-70 (88)
116 2l5u_A Chromodomain-helicase-D 99.2 4.6E-12 1.6E-16 104.2 3.0 47 316-366 11-57 (61)
117 3l11_A E3 ubiquitin-protein li 99.2 2.7E-12 9.4E-17 117.8 1.7 75 683-760 10-89 (115)
118 4ayc_A E3 ubiquitin-protein li 99.2 6E-12 2.1E-16 119.5 3.9 68 681-756 46-113 (138)
119 2kzr_A Ubiquitin thioesterase 99.2 2E-11 7E-16 106.7 5.9 70 1-72 1-76 (86)
120 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.9E-16 120.9 4.7 74 683-760 49-123 (165)
121 1jm7_B BARD1, BRCA1-associated 99.2 1.2E-11 4.3E-16 114.0 4.1 69 680-756 14-83 (117)
122 2io0_B Small ubiquitin-related 99.2 1.1E-10 3.9E-15 103.4 9.9 76 1-77 6-81 (91)
123 2yu4_A E3 SUMO-protein ligase 99.2 1.8E-11 6.2E-16 108.9 4.7 69 685-758 4-81 (94)
124 1wm3_A Ubiquitin-like protein 99.1 1E-10 3.4E-15 99.1 8.8 71 1-72 2-72 (72)
125 1v6e_A Cytoskeleton-associated 99.1 6.2E-11 2.1E-15 105.6 7.9 71 1-72 8-86 (95)
126 2c2l_A CHIP, carboxy terminus 99.1 2.7E-11 9.4E-16 126.4 5.3 70 685-759 205-274 (281)
127 2yt5_A Metal-response element- 99.1 9.8E-12 3.3E-16 103.6 1.4 50 315-365 5-59 (66)
128 2f42_A STIP1 homology and U-bo 99.1 5E-11 1.7E-15 118.1 6.4 69 684-757 102-170 (179)
129 2egp_A Tripartite motif-contai 99.1 1.1E-12 3.7E-17 111.9 -4.8 69 682-752 6-77 (79)
130 1jm7_A BRCA1, breast cancer ty 99.1 2.2E-11 7.4E-16 110.8 3.2 72 681-755 14-85 (112)
131 3hct_A TNF receptor-associated 99.1 2.9E-11 9.9E-16 111.7 3.5 71 681-756 11-81 (118)
132 2ku3_A Bromodomain-containing 99.1 1.1E-11 3.6E-16 105.0 0.4 49 315-366 15-65 (71)
133 2ecw_A Tripartite motif-contai 99.1 7.7E-12 2.6E-16 107.6 -0.5 65 683-752 14-83 (85)
134 2d07_B Ubiquitin-like protein 99.1 2.5E-10 8.5E-15 101.6 9.1 74 1-75 18-91 (93)
135 2csy_A Zinc finger protein 183 99.1 4.7E-11 1.6E-15 102.8 4.3 67 685-758 12-78 (81)
136 1t0y_A Tubulin folding cofacto 99.1 2.1E-10 7E-15 107.0 8.4 71 1-72 7-85 (122)
137 3a4r_A Nfatc2-interacting prot 99.1 4.2E-10 1.4E-14 97.1 9.2 70 1-71 8-78 (79)
138 1wz0_A Ubiquitin-like protein 99.0 2.4E-10 8.1E-15 103.8 7.4 76 1-77 25-100 (104)
139 2ecv_A Tripartite motif-contai 99.0 1.3E-11 4.4E-16 106.2 -1.1 65 683-752 14-83 (85)
140 3u5n_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 118.4 5.1 51 315-369 6-56 (207)
141 2djb_A Polycomb group ring fin 99.0 1E-10 3.5E-15 98.4 3.9 53 683-739 10-63 (72)
142 2ecy_A TNF receptor-associated 99.0 7.2E-11 2.5E-15 97.6 2.9 55 682-739 9-63 (66)
143 1rmd_A RAG1; V(D)J recombinati 99.0 2E-10 6.7E-15 105.6 5.8 70 683-756 18-87 (116)
144 3o36_A Transcription intermedi 99.0 1.3E-10 4.5E-15 115.7 4.9 50 315-368 3-52 (184)
145 3shq_A UBLCP1; phosphatase, hy 99.0 2.2E-10 7.7E-15 123.5 6.2 70 1-72 6-78 (320)
146 2eke_C Ubiquitin-like protein 99.0 7.3E-10 2.5E-14 100.9 8.5 73 1-75 32-104 (106)
147 2l43_A N-teminal domain from h 99.0 5.2E-11 1.8E-15 105.0 0.7 49 315-366 24-74 (88)
148 2yur_A Retinoblastoma-binding 99.0 1.9E-10 6.5E-15 97.5 4.0 53 683-738 10-64 (74)
149 2k8h_A Small ubiquitin protein 99.0 4E-10 1.4E-14 103.2 6.0 76 1-77 27-102 (110)
150 2ro1_A Transcription intermedi 99.0 2.5E-10 8.7E-15 114.3 4.5 48 316-367 2-49 (189)
151 2ysl_A Tripartite motif-contai 99.0 2.6E-10 8.8E-15 95.7 3.3 54 683-739 15-70 (73)
152 3knv_A TNF receptor-associated 98.9 2E-10 6.8E-15 109.8 2.6 72 681-755 24-102 (141)
153 3hcs_A TNF receptor-associated 98.9 3.2E-10 1.1E-14 111.1 3.4 71 681-756 11-81 (170)
154 2ysj_A Tripartite motif-contai 98.9 3.8E-10 1.3E-14 92.3 2.8 50 682-732 14-63 (63)
155 1g25_A CDK-activating kinase a 98.9 5.8E-10 2E-14 91.9 3.7 50 687-739 2-56 (65)
156 3ng2_A RNF4, snurf, ring finge 98.9 6.8E-10 2.3E-14 92.5 3.4 51 685-739 7-64 (71)
157 2d8t_A Dactylidin, ring finger 98.9 6.3E-10 2.1E-14 93.3 2.2 51 685-739 12-62 (71)
158 2k16_A Transcription initiatio 98.9 6.6E-10 2.3E-14 94.8 2.4 48 317-365 19-66 (75)
159 2ct2_A Tripartite motif protei 98.8 1.2E-09 4E-14 94.8 3.8 54 683-739 10-69 (88)
160 2ea6_A Ring finger protein 4; 98.8 8.2E-10 2.8E-14 91.3 2.6 52 683-738 10-68 (69)
161 2ecj_A Tripartite motif-contai 98.8 1.7E-09 5.7E-14 86.6 3.0 48 682-732 9-58 (58)
162 2xeu_A Ring finger protein 4; 98.8 1.7E-09 5.8E-14 88.0 2.6 49 687-739 2-57 (64)
163 3htk_C E3 SUMO-protein ligase 98.8 2.3E-09 7.9E-14 111.4 4.0 69 684-756 177-248 (267)
164 2lv9_A Histone-lysine N-methyl 98.8 2.1E-09 7.3E-14 96.5 3.0 47 319-368 31-77 (98)
165 1wjn_A Tubulin-folding protein 98.7 2.2E-08 7.4E-13 89.3 8.7 71 2-73 11-92 (97)
166 2ect_A Ring finger protein 126 98.7 3.4E-09 1.2E-13 90.2 3.2 52 684-739 11-65 (78)
167 1iym_A EL5; ring-H2 finger, ub 98.7 5.2E-09 1.8E-13 82.9 2.6 49 685-737 2-54 (55)
168 2ecm_A Ring finger and CHY zin 98.7 7.4E-09 2.5E-13 82.0 3.3 47 687-737 4-54 (55)
169 1e4u_A Transcriptional repress 98.7 6.8E-09 2.3E-13 89.3 3.1 53 684-739 7-63 (78)
170 1chc_A Equine herpes virus-1 r 98.7 8.1E-09 2.8E-13 85.4 3.4 49 686-738 3-52 (68)
171 1bor_A Transcription factor PM 98.7 3.2E-09 1.1E-13 85.2 0.7 47 686-739 4-50 (56)
172 4ic3_A E3 ubiquitin-protein li 98.7 6.3E-09 2.1E-13 88.3 2.2 52 680-739 16-68 (74)
173 2kiz_A E3 ubiquitin-protein li 98.6 1.2E-08 4.3E-13 84.6 3.7 51 685-739 11-64 (69)
174 2ecn_A Ring finger protein 141 98.6 3.2E-09 1.1E-13 88.5 -0.2 51 684-739 11-61 (70)
175 1x4j_A Ring finger protein 38; 98.6 1.1E-08 3.8E-13 86.5 2.9 49 686-738 21-72 (75)
176 4gne_A Histone-lysine N-methyl 98.6 1.6E-08 5.4E-13 92.1 3.8 47 315-367 14-62 (107)
177 2l0b_A E3 ubiquitin-protein li 98.6 1.3E-08 4.3E-13 89.7 3.0 50 685-738 37-89 (91)
178 2ep4_A Ring finger protein 24; 98.6 1.4E-08 4.8E-13 85.5 3.1 51 684-738 11-64 (74)
179 3kyd_D Small ubiquitin-related 98.6 1.4E-07 4.8E-12 86.8 9.8 73 1-74 41-113 (115)
180 4ap4_A E3 ubiquitin ligase RNF 98.6 1.6E-08 5.6E-13 93.7 2.5 50 686-739 5-61 (133)
181 1v87_A Deltex protein 2; ring- 98.6 3.2E-08 1.1E-12 90.2 4.0 53 687-739 24-95 (114)
182 2ecg_A Baculoviral IAP repeat- 98.5 2.6E-08 8.7E-13 84.6 3.0 50 682-739 19-69 (75)
183 2ysm_A Myeloid/lymphoid or mix 98.5 7.9E-08 2.7E-12 88.0 4.9 50 315-365 6-55 (111)
184 2y1n_A E3 ubiquitin-protein li 98.4 1.1E-07 3.7E-12 104.4 4.7 52 685-739 329-380 (389)
185 1wen_A Inhibitor of growth fam 98.4 1.5E-07 5.1E-12 79.6 4.4 43 319-366 19-64 (71)
186 2lbm_A Transcriptional regulat 98.4 4.7E-08 1.6E-12 93.1 0.8 50 315-368 62-118 (142)
187 2jmi_A Protein YNG1, ING1 homo 98.4 5.9E-08 2E-12 85.6 1.1 42 319-365 29-74 (90)
188 3pge_A SUMO-modified prolifera 98.4 7.8E-07 2.7E-11 89.5 9.3 75 1-77 30-104 (200)
189 2yho_A E3 ubiquitin-protein li 98.4 6.5E-08 2.2E-12 83.3 0.9 51 681-739 11-62 (79)
190 2vnf_A ING 4, P29ING4, inhibit 98.4 6.5E-08 2.2E-12 79.1 0.8 43 319-366 13-58 (60)
191 3c6w_A P28ING5, inhibitor of g 98.3 1E-07 3.4E-12 77.8 0.9 43 319-366 12-57 (59)
192 2ecl_A Ring-box protein 2; RNF 98.3 2.5E-07 8.6E-12 79.7 3.3 48 687-738 14-76 (81)
193 1weu_A Inhibitor of growth fam 98.3 3.2E-07 1.1E-11 81.1 4.0 43 319-366 39-84 (91)
194 4ap4_A E3 ubiquitin ligase RNF 98.3 1.7E-07 5.7E-12 86.9 2.3 50 686-739 70-126 (133)
195 3tix_A Ubiquitin-like protein 98.3 8.6E-07 2.9E-11 87.8 7.1 76 1-78 58-133 (207)
196 2bay_A PRE-mRNA splicing facto 98.3 2.8E-07 9.5E-12 75.5 2.9 53 688-746 3-56 (61)
197 2g6q_A Inhibitor of growth pro 98.3 1.6E-07 5.6E-12 77.2 1.1 43 319-366 14-59 (62)
198 2vje_A E3 ubiquitin-protein li 98.2 4.5E-07 1.5E-11 74.8 2.7 49 686-738 6-57 (64)
199 1wim_A KIAA0161 protein; ring 98.2 3.6E-07 1.2E-11 80.7 1.3 52 687-738 4-66 (94)
200 3ql9_A Transcriptional regulat 98.2 7.6E-08 2.6E-12 90.2 -3.3 49 315-367 56-111 (129)
201 2vje_B MDM4 protein; proto-onc 98.2 7.6E-07 2.6E-11 73.1 2.8 48 687-738 6-56 (63)
202 3t6p_A Baculoviral IAP repeat- 98.1 4.4E-07 1.5E-11 98.7 1.6 51 681-739 288-339 (345)
203 3dpl_R Ring-box protein 1; ubi 98.1 1.4E-06 4.8E-11 79.2 3.9 47 687-737 36-100 (106)
204 2ea5_A Cell growth regulator w 98.1 1.6E-06 5.6E-11 72.3 3.1 46 686-739 13-59 (68)
205 1x4i_A Inhibitor of growth pro 98.0 1.1E-06 3.8E-11 74.0 1.7 41 321-365 10-53 (70)
206 2pjh_A Protein NPL4, nuclear p 98.0 2E-06 6.8E-11 74.3 2.7 69 1-71 5-78 (80)
207 3v7o_A Minor nucleoprotein VP3 98.0 7.9E-07 2.7E-11 89.2 0.1 75 1-77 22-96 (227)
208 3o70_A PHD finger protein 13; 97.9 4.1E-06 1.4E-10 70.1 3.0 44 319-365 22-65 (68)
209 2kwj_A Zinc finger protein DPF 97.9 2.6E-06 8.7E-11 78.4 0.7 47 318-365 3-59 (114)
210 3goe_A DNA repair protein RAD6 97.9 6.6E-05 2.3E-09 63.9 9.2 70 2-72 11-81 (82)
211 1we9_A PHD finger family prote 97.8 7.1E-06 2.4E-10 67.6 3.0 49 318-366 8-57 (64)
212 2jxx_A Nfatc2-interacting prot 97.7 0.00012 4.1E-09 65.4 9.1 70 1-71 26-96 (97)
213 3v43_A Histone acetyltransfera 97.7 5.3E-06 1.8E-10 76.0 -0.1 47 318-365 7-62 (112)
214 1wee_A PHD finger family prote 97.7 1.3E-05 4.4E-10 67.7 2.3 45 319-365 19-64 (72)
215 4a0k_B E3 ubiquitin-protein li 97.7 5.9E-06 2E-10 76.4 0.1 46 688-737 48-111 (117)
216 3o7a_A PHD finger protein 13 v 97.6 1.5E-05 5E-10 63.1 1.8 43 321-365 8-50 (52)
217 4efo_A Serine/threonine-protei 97.6 9.9E-05 3.4E-09 65.5 7.2 57 3-60 15-74 (94)
218 2kgg_A Histone demethylase jar 97.6 1.1E-05 3.9E-10 63.8 0.9 49 316-365 2-52 (52)
219 2d8s_A Cellular modulator of i 97.6 3.5E-05 1.2E-09 66.5 3.7 51 686-739 13-71 (80)
220 2xb1_A Pygopus homolog 2, B-ce 97.6 1.2E-05 4.2E-10 72.9 0.8 47 317-366 4-60 (105)
221 2vpb_A Hpygo1, pygopus homolog 97.6 9.1E-06 3.1E-10 67.4 -0.4 47 316-365 8-64 (65)
222 3uf8_A Ubiquitin-like protein 97.5 0.00014 4.6E-09 73.8 7.9 75 1-77 22-96 (209)
223 2rsd_A E3 SUMO-protein ligase 97.5 2.5E-05 8.6E-10 65.2 2.0 44 319-365 13-63 (68)
224 1wew_A DNA-binding family prot 97.5 2.4E-05 8E-10 67.2 1.1 45 319-366 19-71 (78)
225 2ri7_A Nucleosome-remodeling f 97.5 9.2E-06 3.1E-10 79.8 -1.8 47 319-366 11-58 (174)
226 1wep_A PHF8; structural genomi 97.4 3.8E-05 1.3E-09 66.0 1.9 48 319-367 15-63 (79)
227 1wem_A Death associated transc 97.4 1.2E-05 4.2E-10 68.5 -1.5 45 319-365 19-68 (76)
228 3ix6_A TS, tsase, thymidylate 97.3 3.1E-05 1.1E-09 84.1 0.0 75 1-77 22-96 (360)
229 3kqi_A GRC5, PHD finger protei 97.2 3.1E-05 1E-09 65.9 -1.2 45 321-365 14-59 (75)
230 2l76_A Nfatc2-interacting prot 97.2 0.0011 3.6E-08 58.8 8.4 70 1-72 22-91 (95)
231 1wil_A KIAA1045 protein; ring 97.1 0.00014 4.9E-09 62.4 1.8 50 315-366 14-75 (89)
232 2kc2_A Talin-1, F1; FERM, adhe 97.0 0.00082 2.8E-08 62.9 5.8 70 2-72 13-121 (128)
233 3lqh_A Histone-lysine N-methyl 96.9 0.00021 7.1E-09 71.0 1.0 51 319-369 5-65 (183)
234 2ct0_A Non-SMC element 1 homol 96.8 0.00085 2.9E-08 57.0 3.8 49 687-738 14-64 (74)
235 4da1_A Protein phosphatase 1K, 96.8 0.00022 7.4E-09 78.6 0.0 74 2-77 32-105 (389)
236 2al3_A TUG long isoform; TUG U 96.6 0.0052 1.8E-07 53.9 7.3 72 1-73 10-81 (90)
237 4bbq_A Lysine-specific demethy 96.5 0.0008 2.7E-08 61.6 1.7 41 328-368 72-115 (117)
238 2bps_A YUKD protein; ubiquitin 96.4 0.0038 1.3E-07 53.9 5.4 68 2-70 6-80 (81)
239 4gne_A Histone-lysine N-methyl 96.4 0.0014 4.8E-08 59.5 2.6 47 310-361 52-98 (107)
240 3vk6_A E3 ubiquitin-protein li 96.3 0.002 6.8E-08 57.4 3.4 46 690-738 3-49 (101)
241 3pur_A Lysine-specific demethy 96.3 0.0014 4.9E-08 74.1 2.5 38 328-365 55-92 (528)
242 3m62_A Ubiquitin conjugation f 96.2 0.0052 1.8E-07 74.1 6.9 69 683-757 886-955 (968)
243 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0014 4.7E-08 70.6 1.5 54 687-740 307-375 (381)
244 3kv5_D JMJC domain-containing 96.1 0.00068 2.3E-08 76.9 -1.0 46 321-366 41-87 (488)
245 3h8z_A FragIle X mental retard 96.0 0.0097 3.3E-07 55.6 6.4 96 133-250 5-100 (128)
246 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.0048 1.6E-07 50.1 3.7 48 687-737 5-58 (60)
247 3s6w_A Tudor domain-containing 96.0 0.006 2.1E-07 48.3 4.2 52 130-193 2-53 (54)
248 3qx1_A FAS-associated factor 1 95.8 0.027 9.3E-07 48.4 7.9 69 2-72 9-82 (84)
249 2dig_A Lamin-B receptor; tudor 95.7 0.01 3.5E-07 48.6 4.5 55 128-195 11-65 (68)
250 2l8d_A Lamin-B receptor; DNA b 95.6 0.011 3.6E-07 48.4 4.2 54 128-194 8-61 (66)
251 3qii_A PHD finger protein 20; 95.4 0.0098 3.3E-07 51.6 3.7 59 123-196 15-73 (85)
252 2equ_A PHD finger protein 20-l 95.4 0.008 2.7E-07 51.0 3.0 55 128-197 8-62 (74)
253 2eqm_A PHD finger protein 20-l 95.3 0.038 1.3E-06 48.3 7.1 60 129-199 19-80 (88)
254 1mhn_A SurviVal motor neuron p 95.3 0.015 5.2E-07 46.8 4.1 54 129-194 3-56 (59)
255 3kv4_A PHD finger protein 8; e 95.2 0.0013 4.5E-08 73.7 -3.1 47 320-366 8-55 (447)
256 4a4f_A SurviVal of motor neuro 95.1 0.015 5E-07 47.8 3.7 55 128-194 7-61 (64)
257 3p8d_A Medulloblastoma antigen 94.6 0.023 7.8E-07 47.2 3.6 54 128-196 5-58 (67)
258 1g5v_A SurviVal motor neuron p 94.4 0.028 9.7E-07 49.2 3.9 58 129-198 10-67 (88)
259 2dzk_A UBX domain-containing p 94.4 0.18 6.2E-06 45.6 9.3 70 2-72 15-89 (109)
260 3pnw_C Tudor domain-containing 94.2 0.037 1.3E-06 47.2 4.1 58 128-197 16-73 (77)
261 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.023 7.9E-07 50.1 2.1 33 687-719 2-37 (101)
262 2ldm_A Uncharacterized protein 92.7 0.012 4.2E-07 50.6 0.0 53 129-196 6-58 (81)
263 1wj4_A KIAA0794 protein; UBX d 93.2 0.18 6.3E-06 46.7 7.2 69 2-72 45-118 (124)
264 2d9t_A Tudor domain-containing 92.7 0.093 3.2E-06 44.7 4.1 59 129-199 9-67 (78)
265 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.4 0.033 1.1E-06 51.2 1.0 37 330-366 1-43 (140)
266 2cr5_A Reproduction 8; UBX dom 91.5 0.72 2.5E-05 41.5 8.8 69 2-72 25-97 (109)
267 3h8z_A FragIle X mental retard 91.4 0.14 4.8E-06 47.8 4.0 57 129-197 60-120 (128)
268 1s3s_G P47 protein; AAA ATPase 90.6 0.48 1.6E-05 44.0 6.8 67 2-69 54-124 (127)
269 3sd4_A PHD finger protein 20; 89.7 0.27 9.1E-06 40.8 3.8 55 128-193 11-67 (69)
270 4e71_A Plexin-B2, MM1; transme 89.2 1.5 5E-05 39.9 8.6 62 10-72 23-109 (111)
271 3rsn_A SET1/ASH2 histone methy 88.9 0.32 1.1E-05 47.7 4.4 50 322-373 10-65 (177)
272 2l32_A Small archaeal modifier 88.1 0.88 3E-05 38.2 6.0 61 1-72 1-61 (74)
273 3fdr_A Tudor and KH domain-con 87.7 0.53 1.8E-05 41.0 4.6 57 129-198 27-83 (94)
274 2lcc_A AT-rich interactive dom 87.4 0.6 2E-05 39.6 4.6 44 127-178 3-48 (76)
275 2eqk_A Tudor domain-containing 87.3 0.37 1.3E-05 41.8 3.2 54 129-195 21-74 (85)
276 2f5k_A MORF-related gene 15 is 86.9 0.7 2.4E-05 41.4 4.9 41 128-178 21-61 (102)
277 3jyu_A Ubiquitin carboxyl-term 85.5 3.4 0.00012 42.0 9.9 63 13-76 154-223 (231)
278 3nw0_A Non-structural maintena 84.9 0.55 1.9E-05 48.2 3.7 50 688-739 180-230 (238)
279 3i2d_A E3 SUMO-protein ligase 84.1 0.96 3.3E-05 49.2 5.3 68 685-756 246-316 (371)
280 3ivf_A Talin-1; FERM domain, c 84.0 3.1 0.00011 44.9 9.4 69 2-72 5-83 (371)
281 3h6n_A Plexin-D1; structural g 83.5 4.6 0.00016 37.4 8.8 64 9-73 15-104 (127)
282 3rpf_C Molybdopterin convertin 83.0 3.7 0.00013 33.9 7.4 66 1-72 1-69 (74)
283 2pv0_B DNA (cytosine-5)-methyl 82.8 0.12 4.2E-06 56.5 -2.3 66 300-368 70-149 (386)
284 1ryj_A Unknown; beta/alpha pro 82.7 7.7 0.00026 31.7 9.2 61 1-72 5-65 (70)
285 2r2o_A Plexin-B1; effector dom 82.3 3.6 0.00012 38.7 7.7 63 11-74 41-129 (138)
286 4fo9_A E3 SUMO-protein ligase 82.2 1.3 4.3E-05 48.2 5.2 68 685-756 212-282 (360)
287 2diq_A Tudor and KH domain-con 81.9 0.86 2.9E-05 40.9 3.3 56 129-197 32-87 (110)
288 2daj_A KIAA0977 protein, COBL- 81.3 1.9 6.6E-05 37.3 4.9 62 2-64 12-76 (91)
289 2eko_A Histone acetyltransfera 81.0 1.3 4.5E-05 38.5 4.0 43 129-179 9-54 (87)
290 3a1b_A DNA (cytosine-5)-methyl 80.8 0.21 7.3E-06 48.1 -1.2 51 315-368 78-135 (159)
291 1vjk_A Molybdopterin convertin 80.6 9.1 0.00031 33.3 9.4 65 1-71 10-92 (98)
292 3dlm_A Histone-lysine N-methyl 80.2 2.2 7.5E-05 42.9 5.8 72 129-216 8-80 (213)
293 4e74_A Plexin-A4; RBD, structu 80.1 3.8 0.00013 37.5 6.8 64 10-74 26-115 (117)
294 2ro0_A Histone acetyltransfera 79.9 1.8 6.1E-05 38.0 4.5 40 129-178 23-62 (92)
295 2juo_A GA-binding protein alph 79.7 5.6 0.00019 34.3 7.2 60 16-76 8-67 (89)
296 2ecl_A Ring-box protein 2; RNF 79.6 0.74 2.5E-05 38.9 1.9 56 302-367 17-73 (81)
297 2rnz_A Histone acetyltransfera 79.6 1.7 6E-05 38.3 4.3 41 128-178 24-64 (94)
298 1iym_A EL5; ring-H2 finger, ub 79.6 1.1 3.7E-05 34.3 2.8 45 318-367 7-52 (55)
299 4a3p_A Ubiquitin carboxyl-term 78.9 4 0.00014 41.0 7.4 62 13-75 142-210 (217)
300 1wgs_A MYST histone acetyltran 78.9 1.9 6.4E-05 40.4 4.6 44 129-179 12-55 (133)
301 2eqj_A Metal-response element- 78.4 2.5 8.7E-05 34.7 4.6 55 127-195 11-65 (66)
302 2ct0_A Non-SMC element 1 homol 75.0 0.77 2.6E-05 38.7 0.7 45 319-368 18-62 (74)
303 1mhn_A SurviVal motor neuron p 74.6 3.3 0.00011 32.9 4.3 28 204-236 3-30 (59)
304 4a4f_A SurviVal of motor neuro 74.0 3.2 0.00011 33.6 4.2 28 204-236 8-35 (64)
305 1oey_A P67-PHOX, neutrophil cy 73.5 5 0.00017 34.6 5.4 46 1-49 6-51 (83)
306 2d9t_A Tudor domain-containing 72.6 4.6 0.00016 34.1 4.9 40 204-251 9-48 (78)
307 1x4j_A Ring finger protein 38; 72.4 0.52 1.8E-05 38.8 -1.0 46 318-368 25-70 (75)
308 3dpl_R Ring-box protein 1; ubi 72.0 1.1 3.9E-05 40.1 1.1 32 331-367 67-98 (106)
309 2ect_A Ring finger protein 126 72.0 2 6.9E-05 35.4 2.6 46 318-368 17-62 (78)
310 4a0k_B E3 ubiquitin-protein li 71.0 0.89 3.1E-05 41.7 0.1 28 335-367 82-109 (117)
311 3kuz_A Plexin-C1; structural g 70.1 11 0.00038 34.9 7.2 60 11-71 39-124 (126)
312 3mea_A SAGA-associated factor 69.9 6.2 0.00021 38.8 5.9 90 129-234 44-141 (180)
313 2kiz_A E3 ubiquitin-protein li 69.0 1.4 4.8E-05 35.4 0.9 47 318-369 16-62 (69)
314 2lrq_A Protein MRG15, NUA4 com 71.3 1.1 3.6E-05 38.9 0.0 40 129-178 12-51 (85)
315 3dwg_C 9.5 kDa culture filtrat 67.5 21 0.00073 30.4 8.3 69 1-72 1-88 (93)
316 3ntk_A Maternal protein tudor; 66.7 2.7 9.1E-05 40.5 2.5 55 129-198 47-101 (169)
317 2l0b_A E3 ubiquitin-protein li 66.5 1 3.5E-05 38.8 -0.5 47 317-368 41-87 (91)
318 1ef1_A Moesin; membrane, FERM 65.1 19 0.00064 37.2 8.9 73 1-75 2-80 (294)
319 1h4r_A Merlin; FERM, neurofibr 64.2 21 0.00072 37.3 9.2 72 1-74 23-99 (314)
320 2ep4_A Ring finger protein 24; 64.1 1.3 4.3E-05 36.2 -0.3 48 317-369 16-63 (74)
321 2ecm_A Ring finger and CHY zin 63.9 2 7E-05 32.7 0.9 45 318-367 7-52 (55)
322 2equ_A PHD finger protein 20-l 63.7 5.4 0.00018 33.5 3.5 27 204-236 9-35 (74)
323 2eko_A Histone acetyltransfera 63.2 6.3 0.00021 34.2 3.9 45 203-250 8-52 (87)
324 3s6w_A Tudor domain-containing 62.6 7 0.00024 30.3 3.8 28 205-237 2-29 (54)
325 2kvr_A Ubiquitin carboxyl-term 62.5 4.8 0.00016 37.4 3.3 34 13-47 58-91 (130)
326 1tyg_B YJBS; alpha beta barrel 62.3 14 0.00048 31.9 6.0 57 9-73 26-83 (87)
327 2rnz_A Histone acetyltransfera 61.9 11 0.00037 33.2 5.2 33 201-240 22-54 (94)
328 2d8s_A Cellular modulator of i 61.4 2.3 7.9E-05 36.1 0.8 49 317-369 16-69 (80)
329 2m0o_A PHD finger protein 1; t 60.8 29 0.001 29.2 7.3 53 129-195 26-78 (79)
330 2cs3_A Protein C14ORF4, MY039 60.5 5.1 0.00017 34.2 2.7 37 686-722 13-53 (93)
331 1v87_A Deltex protein 2; ring- 60.4 1.7 5.9E-05 38.6 -0.1 39 331-369 55-93 (114)
332 3pnw_C Tudor domain-containing 60.2 8.3 0.00028 32.5 4.1 40 204-251 17-56 (77)
333 1g5v_A SurviVal motor neuron p 60.1 8.9 0.0003 33.3 4.3 41 203-251 9-49 (88)
334 3po0_A Small archaeal modifier 59.1 60 0.0021 27.2 9.5 56 11-72 18-84 (89)
335 2ro0_A Histone acetyltransfera 58.2 9.9 0.00034 33.3 4.3 33 202-241 21-53 (92)
336 3ig3_A Plxna3 protein; plexin 57.1 32 0.0011 39.7 9.3 64 10-74 246-335 (627)
337 3ivf_A Talin-1; FERM domain, c 56.9 27 0.00091 37.5 8.5 73 1-74 86-168 (371)
338 3qij_A Protein 4.1; cytoskelet 56.5 25 0.00087 36.6 8.0 73 1-74 18-96 (296)
339 2lcc_A AT-rich interactive dom 55.7 8.4 0.00029 32.5 3.3 35 201-238 2-36 (76)
340 2lcd_A AT-rich interactive dom 60.4 2.5 8.5E-05 38.4 0.0 40 127-178 54-93 (118)
341 1wgk_A Riken cDNA 2900073H19 p 54.2 64 0.0022 29.0 9.2 72 1-74 12-105 (114)
342 2kl0_A Putative thiamin biosyn 53.9 16 0.00053 30.4 4.7 64 1-76 1-64 (73)
343 2ko5_A Ring finger protein Z; 53.6 5.2 0.00018 35.2 1.7 49 685-739 25-74 (99)
344 2kmm_A Guanosine-3',5'-BIS(dip 53.4 22 0.00074 28.6 5.5 62 1-72 1-62 (73)
345 1f0z_A THis protein; ubiquitin 52.4 19 0.00064 28.9 4.9 61 1-72 1-61 (66)
346 3hm6_X Plexin-B1; structural g 52.3 17 0.00059 41.9 6.2 63 11-74 274-362 (644)
347 4bbq_A Lysine-specific demethy 52.3 2.3 7.9E-05 38.3 -0.8 32 319-365 10-41 (117)
348 3p8d_A Medulloblastoma antigen 51.4 11 0.00039 31.0 3.3 37 204-250 6-42 (67)
349 1weo_A Cellulose synthase, cat 49.4 16 0.00056 31.8 4.1 48 688-738 16-70 (93)
350 2qjl_A URM1, ubiquitin-related 49.4 61 0.0021 28.0 8.1 67 1-71 2-93 (99)
351 2c7h_A RBBP6, retinoblastoma-b 49.3 62 0.0021 28.0 7.8 43 2-44 8-51 (86)
352 1vyx_A ORF K3, K3RING; zinc-bi 47.6 1.4 4.9E-05 35.3 -2.6 47 318-368 8-57 (60)
353 2i1j_A Moesin; FERM, coiled-co 47.6 42 0.0015 38.5 8.6 74 1-76 5-84 (575)
354 2lk0_A RNA-binding protein 5; 46.8 4.3 0.00015 28.5 0.1 12 355-366 2-13 (32)
355 2k5p_A THis protein, thiamine- 46.6 25 0.00086 29.5 4.9 67 1-76 1-68 (78)
356 2hqx_A P100 CO-activator tudor 46.1 25 0.00086 35.4 5.8 55 129-197 65-119 (246)
357 3qii_A PHD finger protein 20; 45.0 16 0.00054 31.6 3.3 37 204-250 21-57 (85)
358 2f5k_A MORF-related gene 15 is 44.5 22 0.00074 31.7 4.3 28 204-238 22-49 (102)
359 2wac_A CG7008-PA; unknown func 43.9 18 0.0006 35.5 4.1 54 130-197 52-105 (218)
360 1fm0_D Molybdopterin convertin 43.8 47 0.0016 27.2 6.2 53 12-71 18-75 (81)
361 3dlm_A Histone-lysine N-methyl 43.8 74 0.0025 31.9 8.5 96 125-237 64-184 (213)
362 4eut_A Serine/threonine-protei 43.7 44 0.0015 35.5 7.6 50 10-60 321-372 (396)
363 1vd2_A Protein kinase C, IOTA 43.5 58 0.002 28.2 6.8 46 3-49 7-54 (89)
364 2ldm_A Uncharacterized protein 49.1 5.1 0.00017 34.4 0.0 28 204-237 6-33 (81)
365 2d8t_A Dactylidin, ring finger 42.7 5.3 0.00018 32.3 0.0 43 318-368 17-59 (71)
366 2lq6_A Bromodomain-containing 42.2 8.5 0.00029 33.2 1.3 31 316-347 17-49 (87)
367 2ecj_A Tripartite motif-contai 41.9 9 0.00031 29.2 1.3 42 318-364 17-58 (58)
368 2cu3_A Unknown function protei 41.9 38 0.0013 26.9 5.1 56 8-72 4-59 (64)
369 1weq_A PHD finger protein 7; s 41.6 27 0.00092 30.1 4.3 34 329-366 44-78 (85)
370 2egp_A Tripartite motif-contai 41.6 12 0.00042 30.4 2.2 48 318-368 14-63 (79)
371 2csy_A Zinc finger protein 183 41.5 3.9 0.00013 34.0 -1.0 44 318-369 17-60 (81)
372 3m9q_A Protein MALE-specific l 41.4 27 0.00092 31.1 4.4 48 128-178 18-68 (101)
373 1ip9_A BEM1 protein; ubiquitin 40.2 45 0.0015 28.8 5.4 41 3-46 13-54 (85)
374 2k9x_A Tburm1, uncharacterized 39.8 9.3 0.00032 34.4 1.2 71 1-73 5-98 (110)
375 3fdr_A Tudor and KH domain-con 39.8 38 0.0013 29.0 5.1 28 204-236 27-54 (94)
376 4b9x_A TDRD1, tudor domain-con 39.5 25 0.00084 35.2 4.5 57 130-199 66-122 (226)
377 6rxn_A Rubredoxin; electron tr 39.3 18 0.00063 27.6 2.6 17 349-367 23-39 (46)
378 2e5p_A Protein PHF1, PHD finge 39.1 29 0.00098 28.5 3.8 54 128-195 8-61 (68)
379 1jm7_A BRCA1, breast cancer ty 38.9 8.5 0.00029 33.6 0.8 46 319-369 24-69 (112)
380 1chc_A Equine herpes virus-1 r 38.6 8 0.00027 30.7 0.5 46 318-370 7-52 (68)
381 2l52_A Methanosarcina acetivor 38.5 1E+02 0.0035 26.6 7.8 66 1-71 4-93 (99)
382 3k1l_B Fancl; UBC, ring, RWD, 38.0 4.9 0.00017 43.5 -1.1 49 319-368 311-371 (381)
383 2e5q_A PHD finger protein 19; 37.9 32 0.0011 27.9 3.9 56 126-195 4-59 (63)
384 3m9p_A MALE-specific lethal 3 37.5 40 0.0014 30.5 4.9 48 128-178 18-68 (110)
385 2ysl_A Tripartite motif-contai 37.5 7.4 0.00025 31.3 0.1 46 318-368 22-67 (73)
386 3nw0_A Non-structural maintena 36.7 8.9 0.0003 39.2 0.6 44 319-367 183-226 (238)
387 4b9w_A TDRD1, tudor domain-con 36.4 25 0.00085 34.5 3.8 57 130-199 66-122 (201)
388 1zbd_B Rabphilin-3A; G protein 36.0 12 0.0004 35.0 1.3 49 687-735 54-107 (134)
389 4ayc_A E3 ubiquitin-protein li 35.8 6 0.0002 36.5 -0.8 42 319-368 56-97 (138)
390 3l11_A E3 ubiquitin-protein li 35.1 14 0.00049 32.6 1.7 45 318-369 17-61 (115)
391 2bud_A Males-absent on the fir 34.8 57 0.002 28.5 5.3 42 133-180 18-59 (92)
392 2ecn_A Ring finger protein 141 33.9 7.7 0.00026 31.0 -0.3 41 318-367 17-57 (70)
393 4hcz_A PHD finger protein 1; p 33.3 47 0.0016 26.6 4.1 53 129-195 3-55 (58)
394 2zet_C Melanophilin; complex, 32.9 20 0.00068 34.2 2.3 46 687-735 67-117 (153)
395 1wgr_A Growth factor receptor- 32.7 1.4E+02 0.0048 26.4 7.6 70 3-73 12-92 (100)
396 2q5w_D Molybdopterin convertin 32.6 53 0.0018 26.6 4.7 54 11-71 16-71 (77)
397 3lrq_A E3 ubiquitin-protein li 31.4 6.5 0.00022 34.2 -1.3 46 318-369 24-69 (100)
398 3mp6_A MBP, SGF29, maltose-bin 30.9 46 0.0016 37.1 5.4 126 127-279 385-517 (522)
399 2k1p_A Zinc finger RAN-binding 30.8 16 0.00056 25.7 1.0 11 356-366 4-14 (33)
400 2ecv_A Tripartite motif-contai 30.6 12 0.00039 30.8 0.2 48 318-369 21-70 (85)
401 2ecy_A TNF receptor-associated 29.7 9.6 0.00033 30.2 -0.4 43 318-367 17-59 (66)
402 2ylm_A Ubiquitin carboxyl-term 29.7 32 0.0011 39.1 3.8 32 14-46 39-70 (530)
403 1at0_A 17-hedgehog; developmen 29.1 1.6E+02 0.0055 27.2 8.0 105 130-250 21-131 (145)
404 2diq_A Tudor and KH domain-con 28.9 53 0.0018 28.9 4.4 28 204-236 32-59 (110)
405 2k3y_A Chromatin modification- 28.1 40 0.0014 31.5 3.5 27 128-156 8-34 (136)
406 1z60_A TFIIH basal transcripti 27.7 50 0.0017 26.5 3.5 40 689-732 16-58 (59)
407 2og0_A Excisionase; protein-DN 27.5 18 0.00062 28.3 0.9 23 420-442 28-52 (52)
408 3hvz_A Uncharacterized protein 27.4 88 0.003 26.2 5.2 61 2-72 7-67 (78)
409 3bdl_A Staphylococcal nuclease 27.3 46 0.0016 38.0 4.6 57 129-199 411-467 (570)
410 3gj8_B Nuclear pore complex pr 26.7 15 0.00051 32.0 0.2 27 297-325 5-31 (92)
411 4b2u_A S67; toxin, ICK; NMR {S 26.6 13 0.00044 25.9 -0.1 14 355-368 15-28 (36)
412 1bor_A Transcription factor PM 26.3 57 0.0019 24.9 3.6 40 318-368 8-47 (56)
413 3qa8_A MGC80376 protein; kinas 26.3 46 0.0016 39.0 4.4 51 9-60 320-371 (676)
414 2ckl_B Ubiquitin ligase protei 25.9 12 0.00039 35.5 -0.7 45 318-368 56-100 (165)
415 3mjh_B Early endosome antigen 25.7 15 0.00052 26.3 0.1 15 687-701 4-18 (34)
416 2ct2_A Tripartite motif protei 25.7 15 0.00052 30.4 0.1 48 318-367 17-65 (88)
417 1wil_A KIAA1045 protein; ring 25.6 39 0.0013 29.2 2.6 49 685-733 12-74 (89)
418 3au4_A Myosin-X; protein-prote 25.5 84 0.0029 35.5 6.3 45 1-46 217-263 (555)
419 1m3v_A FLIN4, fusion of the LI 25.4 32 0.0011 30.8 2.3 49 687-739 31-82 (122)
420 2kn9_A Rubredoxin; metalloprot 25.3 52 0.0018 28.1 3.3 19 349-369 53-71 (81)
421 1s24_A Rubredoxin 2; electron 25.0 40 0.0014 29.2 2.6 19 349-369 61-79 (87)
422 1e8j_A Rubredoxin; iron-sulfur 24.7 68 0.0023 24.9 3.7 17 349-367 29-45 (52)
423 3fl2_A E3 ubiquitin-protein li 24.2 8.8 0.0003 34.5 -1.8 45 318-369 54-98 (124)
424 2lbm_A Transcriptional regulat 22.2 50 0.0017 31.1 2.9 48 687-734 62-116 (142)
425 1yk4_A Rubredoxin, RD; electro 21.5 57 0.0019 25.4 2.6 17 349-367 28-44 (52)
426 2v3b_B Rubredoxin 2, rubredoxi 21.3 62 0.0021 25.5 2.9 18 349-368 29-46 (55)
427 1dx8_A Rubredoxin; electron tr 20.9 57 0.0019 27.0 2.7 17 349-367 33-49 (70)
428 2ckl_A Polycomb group ring fin 20.8 22 0.00075 31.0 0.2 45 318-369 17-61 (108)
429 2o35_A Hypothetical protein DU 20.7 36 0.0012 30.2 1.4 13 709-721 42-54 (105)
430 2g1e_A Hypothetical protein TA 20.6 2.5E+02 0.0087 23.0 6.9 55 15-71 19-84 (90)
431 3fyb_A Protein of unknown func 20.5 36 0.0012 30.1 1.4 13 709-721 41-53 (104)
432 2eel_A Cell death activator CI 20.4 2.3E+02 0.008 24.6 6.6 51 22-75 28-80 (91)
No 1
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=4.6e-86 Score=666.17 Aligned_cols=229 Identities=64% Similarity=1.174 Sum_probs=178.5
Q ss_pred CCCCcccCCCCccccCccceeeccCCCCCCCCCceeecceecchhhhhhhcccCCCCCCCccCCCCCeEEEEecCCcccc
Q psy11302 391 NSKSTRDWGKGMACVGRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDD 470 (764)
Q Consensus 391 ts~~~r~~gkg~a~~Gr~~~c~~~p~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~~~gA~Sivlsggy~dd 470 (764)
+++++|||||+|||+||+++|+++|+++|||||||+|||+|+||+||+++|||+|+|+||||++..|||||||||||+||
T Consensus 2 ~~~~~~~~g~~~a~~g~~~~~~~~p~~~~G~IPGV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~~GA~SIVlSGgYeDD 81 (231)
T 3oln_A 2 STESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADE 81 (231)
T ss_dssp ----------------------CCCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTEEEEEEESSCSSTT
T ss_pred CccccccccccccccceeEEEeecCCccCcCCCCCcCcCEEccHHHHhhhCCCCcccCCcccCCCCCeEEEEecCCcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEccCCCCCCCCccccccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCC
Q psy11302 471 VDDGDSFLYTGSGGRDLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAP 550 (764)
Q Consensus 471 ~D~gd~~~YtG~gg~~~~~nk~~~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap 550 (764)
+|+||+|+|||+||+|++||||+++|++||+|++||+||++||++||++|+||+++||+.++|||||||+++.++|+|||
T Consensus 82 ~D~Gd~liYTGsGG~d~~gnkrt~~q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k~~k~s~yaP 161 (231)
T 3oln_A 82 VDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAP 161 (231)
T ss_dssp CBCSSEEEEECCCC-----------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGGGTTTCTTSC
T ss_pred CCCCCEEEEEcCCCccCcCcccccccccccccccchHHHHhhhhccccccccchhhhhccCCceEEEeccccCcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred CccceeceEEEEEEEEEecCCC-CcEEEEEEEeecCCCCCCCchhhhhhhcccCccccCCCchHHHHHHH
Q psy11302 551 KEGNRYDGIYKVVKYYPVKGSS-DFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAK 619 (764)
Q Consensus 551 ~~g~rYDGLY~V~~~~~~~g~~-g~~v~~f~l~R~~~~~~~~~~~~~~~~~~~~l~~~~p~g~l~~~~~~ 619 (764)
.+||||||||+|++||+++|++ ||.||||+|+|+++||+||++++++|++.|+|.|+||+||||+++++
T Consensus 162 ~~gyrYDGLY~V~~~W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~~~~~~~~~~~~~~p~~y~~~~~~~ 231 (231)
T 3oln_A 162 EEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSDKEGK 231 (231)
T ss_dssp SSSEEEEEEEEEEEEEEEECTTTCCEEEEEEEEECCSSCCTTSHHHHHHHHHCC----------------
T ss_pred CCCeEeCeEEEEEEEEeccCCcCCeEEEEEEEEECCCCCCCcchhhhhHHhhcCceeecCccHHHHhhcC
Confidence 9999999999999999999999 99999999999999999999999999999999999999999998863
No 2
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=1.6e-78 Score=614.99 Aligned_cols=223 Identities=69% Similarity=1.180 Sum_probs=195.2
Q ss_pred CccceeeccCCCCCCCCCceeecceecchhhhhhhcccCCCCCCCccCCCCCeEEEEecCCccccCCCCCeEEEEccCCC
Q psy11302 406 GRTKVCTIVPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGR 485 (764)
Q Consensus 406 Gr~~~c~~~p~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~~~gA~Sivlsggy~dd~D~gd~~~YtG~gg~ 485 (764)
||+++|+++|.+||||||||+|||||+||+||+++|||+++|+||+|++..|||||||||||+||+|+||+|+|||+||+
T Consensus 1 ~~~~~~~~~~~~~~G~iPGV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~~GA~SIVlSGgYeDD~D~GD~liYTGsGG~ 80 (239)
T 2pb7_A 1 GHMKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGR 80 (239)
T ss_dssp ----CCCSSCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEESSCSTTCCBCSSEEEEECCCC-
T ss_pred CCceEEEecCCCcccCCCCCcCCCEECCHHHHHHhCCccccccCcccCCCCCEEEEEECCCccccccCCcEEEEEccCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEE
Q psy11302 486 DLSGNKRTSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKY 565 (764)
Q Consensus 486 ~~~~nk~~~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~ 565 (764)
|++||||+++|++||+|++||+||++||++||++|+||+++||++++|||||||+++.++|+|||.+||||||||+|++|
T Consensus 81 d~~gnkr~~~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~GyrYDGLY~V~~~ 160 (239)
T 2pb7_A 81 DLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKY 160 (239)
T ss_dssp ---------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEEEEEEEEE
T ss_pred cCcccccccccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCcCCcccCCceEEeCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred EEecCCCCcEEEEEEEeecCCCCCCCchhhhhhhcccCccccCCCchHHHHHHHHHHhhhhcc
Q psy11302 566 YPVKGSSDFIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAKEASKANLKR 628 (764)
Q Consensus 566 ~~~~g~~g~~v~~f~l~R~~~~~~~~~~~~~~~~~~~~l~~~~p~g~l~~~~~~e~~~~~k~~ 628 (764)
|.++|++||.||||+|+|+++||+||++++.+|++.|+|.|+||+|||+++++++++.+.+++
T Consensus 161 w~e~gk~G~~V~kf~L~R~~gQP~~w~~~~~~r~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (239)
T 2pb7_A 161 WPEKGKSGFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKR 223 (239)
T ss_dssp EEEECTTSSEEEEEEEEECCSSCCTTSHHHHHHHHHTTCCCBCCTTTTTCC------------
T ss_pred EEeecCCCcEEEEEEEEECCCCCCCccccccccccccCcceecCcccchhhhhhhhhhccccC
Confidence 999999999999999999999999999999999999999999999999999999987765554
No 3
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=100.00 E-value=6.1e-78 Score=602.92 Aligned_cols=209 Identities=67% Similarity=1.200 Sum_probs=204.8
Q ss_pred cCCCCCCCCCceeecceecchhhhhhhcccCCCCCCCccCCCCCeEEEEecCCccccCCCCCeEEEEccCCCCCCCCccc
Q psy11302 414 VPSDHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDVGAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKRT 493 (764)
Q Consensus 414 ~p~~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~~~gA~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk~~ 493 (764)
+|++||||||||+|||||+||+||+++|+|+++|+||+|++..||+||||||||+||+|+||+|+|||+||+|++||||+
T Consensus 2 ~p~~~~G~iPGv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~~GA~SIVlSGGY~DD~D~Gd~l~YTGsGG~d~~gnkr~ 81 (212)
T 3fde_A 2 MPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRT 81 (212)
T ss_dssp CCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEECSCSTTCEECSSEEEEECSCCBCCTTTCSC
T ss_pred CCcccccCCCCCcCccEecCHHHHhHhccCCCCcCCcccCCCcceEEEEeCCCcccCCCCCCEEEEeccCCccCcCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEEEEecCCCC
Q psy11302 494 SVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSSD 573 (764)
Q Consensus 494 ~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~~~~~g~~g 573 (764)
++|++||+|+++|+||++||++|+|++ ||+++||++++|||||||+++.++|+|||.+||||||||+|++||+++|++|
T Consensus 82 ~~q~~DQ~l~~gNlAL~~s~~~~~~~~-~~~~~s~~~g~PVRVIRg~k~~k~s~yaP~~gyrYDGLY~V~~~W~e~g~~G 160 (212)
T 3fde_A 82 AGQSSDQKLTNNNRALALNCHSPINEK-GAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSG 160 (212)
T ss_dssp CCBCSCCCSCHHHHHHHHTSSSCCCTT-CEECSSGGGSCCEEEEEESCSSTTCSSSCSSSEEEEEEEEEEEEEEEECTTS
T ss_pred CcccccccccccchHHHhhcccccccc-chhhhhhhcCCcEEEEcccCcCCCCccCCCCCeEeCeEEEEEEEEEccCCCC
Confidence 999999999999999999999999999 9999999999999999999987789999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCCCCchhhhhhhcccCccccCCCchHHHHHHHHHHh
Q psy11302 574 FIVWRFHLQRDDEAPAPWTEEGKKRIKDLGLQMIYPEGYEEAQAAKEASK 623 (764)
Q Consensus 574 ~~v~~f~l~R~~~~~~~~~~~~~~~~~~~~l~~~~p~g~l~~~~~~e~~~ 623 (764)
|.||||+|+|+++||+||++++++|+++|+|.|+||+||||+++++++++
T Consensus 161 ~~V~kf~L~R~~gqp~~w~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 210 (212)
T 3fde_A 161 FLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSR 210 (212)
T ss_dssp SEEEEEEEEECCSSCCTTSHHHHHHHHHHTCCCBCCTTHHHHHHHHTSCC
T ss_pred cEEEEEEEEECCCCCCCcchhhHhhhhccccceeCCcchhhHhhhcchhc
Confidence 99999999999999999999999999999999999999999999987643
No 4
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.3e-69 Score=549.25 Aligned_cols=224 Identities=39% Similarity=0.869 Sum_probs=203.4
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccccccccccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLI 207 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~ 207 (764)
|||||||+|||||++|||||||+|++|+++..+.... +|++||||+|++|||+|++++.+++||||||+.+ +|++|+|
T Consensus 1 ~~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~-~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~-~~~~l~~ 78 (226)
T 3ask_A 1 SLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPAL-EEDVIYHVKYDDYPENGVVQMNSRDVRARARTII-KWQDLEV 78 (226)
T ss_dssp CCSCTTCEEEEECTTTCCEEEEEEEEEEECC-------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBC-CGGGCCT
T ss_pred CccccCceEEeeecCCCceeEEEEEEEeccccccCCC-CCceEEEeecccCcccCceecccccccccccccC-Ccccccc
Confidence 6999999999999999999999999999987654433 6889999999999999999999999999999999 9999999
Q ss_pred ccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecCCCccccccccchhhhhhhhcccCchhhhccccCccc
Q psy11302 208 GVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLAERTAEDED 287 (764)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~~~~~~~l~~c~i~f~~e~~~iE~~~~l~~~~~~~~~ 287 (764)
||+||+|||+++|++||||||++|++++++||.+|++|+|+|| |++|++|+|.|++|+|+|| .+++.+
T Consensus 79 g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r~~~~~~a~i~l~----g~sl~~c~i~f~~e~~~ie-------~~~~~~- 146 (226)
T 3ask_A 79 GQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLG----DDSLNDCRIIFVDEVFKIE-------RPGEGS- 146 (226)
T ss_dssp TCEEEEEECTTSTTSCCEEEEEEEEEEEECSSCEEEEEEEECS----SSEEEEEEESCTTCCBCCC-------CSSSSC-
T ss_pred CcEEEEecccCCccccCceeehhhhhhhhcccccceeeEEEec----CCcccceeEEEeccccccc-------cccccc-
Confidence 9999999999999999999999999999999999999999999 5679999999999999999 677766
Q ss_pred CCCCCcccccCCCCCCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCC-CCCCccCcC
Q psy11302 288 HMSTEPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDD-EWFCPSCKR 366 (764)
Q Consensus 288 ~~~~~~~~~r~~~~~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g-~W~C~~C~~ 366 (764)
.+.+++.+ |...++|.+|+++++|.|.+|.|.+|++.++++.||+||.|+++||++||+|||..+| .| +|+||.|..
T Consensus 147 ~~~~~~~~-r~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 147 PMVDNPMR-RKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp CCCSCCCC-CCCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred cccccccc-ccCCcccccccCCcCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 56677777 8999999999999999999999999999989999999999999999999999999999 88 999999984
Q ss_pred C
Q psy11302 367 D 367 (764)
Q Consensus 367 ~ 367 (764)
+
T Consensus 225 ~ 225 (226)
T 3ask_A 225 D 225 (226)
T ss_dssp -
T ss_pred c
Confidence 3
No 5
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=100.00 E-value=8.9e-65 Score=480.84 Aligned_cols=146 Identities=36% Similarity=0.680 Sum_probs=135.5
Q ss_pred CCcCCccccccceeeeeecccCcccceeeeeeEecCCCCC--------CCCCCCeEEEEEeCCCCCCCcccccccccccC
Q psy11302 123 KPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEK--------PYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPL 194 (764)
Q Consensus 123 ~d~~~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~--------~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~r 194 (764)
+||++|||||||||||||++|||||||+|++||++..++. +.++|++||||+||||||+|+++|++++||||
T Consensus 4 ~d~~~glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpR 83 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR 83 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECC
T ss_pred cccccceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccc
Confidence 8999999999999999999999999999999999865332 55689999999999999999999999999999
Q ss_pred cccccccccccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecCCCccccccccchhhhhhhhccc
Q psy11302 195 PKHLITEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIE 273 (764)
Q Consensus 195 a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~~~~~~~l~~c~i~f~~e~~~iE 273 (764)
||++| +|++|+|||+||||||+|+|+||||||||+|++++++||+|||+|+|+|| +++||||||.|++|||+||
T Consensus 84 ARt~l-~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~rEl~~~i~LG----~d~lndcri~fvdEIykIE 157 (161)
T 3db3_A 84 ARTII-KWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLG----DDSLNDCRIIFVDEVFKIE 157 (161)
T ss_dssp CCCBC-CGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSCEEEEEEEECS----SSEEEEEEESCTTCCBCCC
T ss_pred eEEec-cHHHCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhhheeEEEEEEC----CCcccceEEEEeeeEEEEe
Confidence 99999 99999999999999999999999999999999999999999999999999 4899999999999999999
No 6
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=100.00 E-value=2.8e-57 Score=443.47 Aligned_cols=159 Identities=37% Similarity=0.643 Sum_probs=136.6
Q ss_pred CCCCCCCceeecceecchhhhhhhcccCCCCCCCccCCCC----CeEEEEecCCccccCCCCCeEEEEccCCCCCCCCcc
Q psy11302 417 DHFGPIPGIEVGQSYLYRFQASEAGVHRPHVSGIHGREDV----GAFSLVLSGGYEDDVDDGDSFLYTGSGGRDLSGNKR 492 (764)
Q Consensus 417 ~~~G~ipGv~vG~~~~~r~~~~~~G~H~~~~~GI~g~~~~----gA~Sivlsggy~dd~D~gd~~~YtG~gg~~~~~nk~ 492 (764)
.+|||||||+|||||+||+||+++|+|+++|+||+|.+.+ ||+|||+||||+||+|+||+|+|||+||+|++ ++
T Consensus 1 ~~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG~~~~--~~ 78 (167)
T 3q0b_X 1 QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGK--KK 78 (167)
T ss_dssp CCCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSSSCEEEEEEEESSSTTCEECSSSEEEEECSCTTCC-----
T ss_pred CcccCCCCCcCccEecchHHHhHhCcCCCccCCeecccccCCCcceEEEEeCCCcccccCCCCEEEEECCCCCccc--cc
Confidence 3799999999999999999999999999999999998765 89999999999999999999999999999986 34
Q ss_pred ccccccCccchhhcHHHHhhcCCCCCccCCcccccccCCCceEEEeccCCCCCCCCCCCccceeceEEEEEEEEEecCCC
Q psy11302 493 TSVQSFDQTLTRMNKALARNCNAPIDDKRGNEAVDWKKGKPVRVMRNFHGAKHSKYAPKEGNRYDGIYKVVKYYPVKGSS 572 (764)
Q Consensus 493 ~~~q~~dq~l~~~n~aL~~~~~~~~~~~~~~~~~s~~~~~pVRViR~~~~~~~s~~ap~~g~rYDGLY~V~~~~~~~g~~ 572 (764)
+++|++||+|+++|+||++|| ++++|||||||++..+++.|+|.+||||||||+|++||.++|++
T Consensus 79 ~~~q~~DQ~l~~gN~AL~~S~---------------~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~ 143 (167)
T 3q0b_X 79 NNEPPKDQQLVTGNLALKNSI---------------NKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSH 143 (167)
T ss_dssp --CCCCCCCSSHHHHHHHHHH---------------HHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTT
T ss_pred cccccccCccchhHHHHHHHH---------------HcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCC
Confidence 557999999999999999765 68999999999998667899999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCC-CCc
Q psy11302 573 DFIVWRFHLQRDDEAPA-PWT 592 (764)
Q Consensus 573 g~~v~~f~l~R~~~~~~-~~~ 592 (764)
||.||||+|+|+++||+ ||.
T Consensus 144 G~~v~kf~L~R~~gQp~l~~~ 164 (167)
T 3q0b_X 144 GKLVFKFKLRRIPGQPELPWK 164 (167)
T ss_dssp SCEEEEEEEEECTTSCCCCC-
T ss_pred CcEEEEEEEEEcCCCCCCChh
Confidence 99999999999999997 453
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=168.95 Aligned_cols=114 Identities=39% Similarity=0.829 Sum_probs=100.4
Q ss_pred ecCChhhhhcccccccCccchHHHHHHHhhhhH------HHHHhhhcccccccccccccCceecCCCCcchHhHHHHHHh
Q psy11302 647 YTLPSSVLEHINNDTVHSNVWDEIKALCKEGQK------EVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFK 720 (764)
Q Consensus 647 ~~l~~e~~~li~~d~~n~kl~~e~~~~l~~~~~------~~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~ 720 (764)
|.|+.+++.+++++..|.++|.++++.+++++. .+...+.+.+.|+||++++.+|++++|||+||..||..|+.
T Consensus 5 ~~l~~e~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 5 YSLTAQQSSLIREDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp -CCCHHHHHHHHHCGGGHHHHHHHHHC---CCSSSCHHHHHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHhHhhHHHHHHHHHHhhcccchhhhHHHHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh
Confidence 889999999999999999999999999977542 56778889999999999999999999999999999999998
Q ss_pred hcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCCCCCCC
Q psy11302 721 IESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR 764 (764)
Q Consensus 721 ~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg~~~~R 764 (764)
..... ||.||..+.... .+.+|..|.++++.+||||.++|
T Consensus 85 ~~~~~---CP~Cr~~~~~~~-~~~~n~~l~~~i~~~~p~~~~~R 124 (124)
T 3fl2_A 85 AQVFS---CPACRYDLGRSY-AMQVNQPLQTVLNQLFPGYGNGR 124 (124)
T ss_dssp TTCCB---CTTTCCBCCTTC-CCCCCHHHHHHHHHHSTTTTTTC
T ss_pred HCcCC---CCCCCccCCCCC-CCCCCHHHHHHHHHHcccccccC
Confidence 66555 999999998732 68999999999999999999998
No 8
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=174.83 Aligned_cols=120 Identities=35% Similarity=0.789 Sum_probs=104.9
Q ss_pred cccccee-ecCChhhhhcccccccCccchHHHHHHHhhhhHHHHHhhhcccccccccccccCceecCCCCcchHhHHHHH
Q psy11302 640 VKKSKQV-YTLPSSVLEHINNDTVHSNVWDEIKALCKEGQKEVLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRA 718 (764)
Q Consensus 640 ~kK~k~~-~~l~~e~~~li~~d~~n~kl~~e~~~~l~~~~~~~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~ 718 (764)
+||++++ |.|+.++..+++++..|.++|.+.++.+..+. .+...+.+.+.|+||++++.+|++++|||+||..||..|
T Consensus 30 ~kk~~~e~~~L~~e~~~li~~d~~n~~l~~e~~~~l~~~~-~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~ 108 (150)
T 1z6u_A 30 DSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGP-NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRS 108 (150)
T ss_dssp ------CCCCCCHHHHHHHHHCGGGHHHHHHHGGGGGGGG-GHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHH
T ss_pred cccccccceeccHHHHHHHHhhhhhHHHHHHHHHHhhcch-hHHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHH
Confidence 4555665 99999999999999999999999999887764 677888999999999999999999999999999999999
Q ss_pred HhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCCCCCCC
Q psy11302 719 FKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSSAR 764 (764)
Q Consensus 719 ~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg~~~~R 764 (764)
+...... ||.||..+.... .+.+|..|.++++.|+|+|.++|
T Consensus 109 ~~~~~~~---CP~Cr~~~~~~~-~l~~n~~l~~lv~~~~p~~~~~R 150 (150)
T 1z6u_A 109 FKAQVFS---CPACRHDLGQNY-IMIPNEILQTLLDLFFPGYSKGR 150 (150)
T ss_dssp HHTTCCB---CTTTCCBCCTTC-CCCBCHHHHHHHHHHSTTTTTTC
T ss_pred HHhCCCc---CCCCCccCCCCC-CCCCCHHHHHHHHHHhhHhhccC
Confidence 9976655 999999998753 58999999999999999999998
No 9
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.2e-19 Score=150.66 Aligned_cols=73 Identities=41% Similarity=1.131 Sum_probs=68.8
Q ss_pred CcccccCCCCCCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCC-CCCCccCcC
Q psy11302 292 EPKTLRQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDD-EWFCPSCKR 366 (764)
Q Consensus 292 ~~~~~r~~~~~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g-~W~C~~C~~ 366 (764)
++.+ |+..|+|.+|++++.|.|.+|.|.+|++.++++.||+||.|+++||++||+|||..+| +| +|||+.|..
T Consensus 3 ~~~~-~~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 3 SGSS-GRNDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp CCCC-CCCCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred cccc-ccCCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCC-CCCCcCCcCccC
Confidence 4556 7899999999999999999999999999989999999999999999999999999999 88 999999974
No 10
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.71 E-value=5.7e-18 Score=143.25 Aligned_cols=67 Identities=46% Similarity=1.321 Sum_probs=63.9
Q ss_pred CCCCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCC-CCCCccCcCC
Q psy11302 300 VPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDD-EWFCPSCKRD 367 (764)
Q Consensus 300 ~~~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g-~W~C~~C~~~ 367 (764)
.++|.+|+++++|.|.+|.|.+|++.++++.||+||.|+++||++||+|||.++| +| +|+|+.|..+
T Consensus 2 ~~~c~~c~~~~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~~ 69 (70)
T 3asl_A 2 GPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRND 69 (70)
T ss_dssp CCSCTTTTTCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCC-SSSCCCCTTTSCC
T ss_pred CcccccccCCCCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCC-CCCCcCCcCccCc
Confidence 5899999999999999999999999989999999999999999999999999999 88 9999999843
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=140.85 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRL-TQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECT-TSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECC-cChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999875
No 12
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.70 E-value=7.8e-18 Score=144.76 Aligned_cols=69 Identities=42% Similarity=1.236 Sum_probs=64.0
Q ss_pred cCCCCCCCCcCCcCCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCC-CCCccCcC
Q psy11302 297 RQIVPECTTCNDVETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDE-WFCPSCKR 366 (764)
Q Consensus 297 r~~~~~C~~C~~~~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~-W~C~~C~~ 366 (764)
+...++|.+|+++++|.|.+|.|.+|++..+++.||+||.|+++||++||+|||..+| .|+ |||+.|++
T Consensus 7 ~~~~~~c~~c~~~~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P-~g~~W~C~~C~~ 76 (77)
T 3shb_A 7 EFSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 76 (77)
T ss_dssp --CCCSCTTTTTCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCC-SSSCCCCTTTC-
T ss_pred ccCCccccccCCCCCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCC-CCCceECcCccc
Confidence 5667899999999999999999999999999999999999999999999999999999 888 99999985
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.70 E-value=3e-17 Score=144.49 Aligned_cols=79 Identities=25% Similarity=0.445 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNY 80 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~~~ 80 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++|+.++...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEP-TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECC-CCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999998876544
No 14
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=3.3e-17 Score=144.22 Aligned_cols=75 Identities=31% Similarity=0.546 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+| +|++|||+++++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGA-QMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEET-TCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECC-CCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 8999999999999999997 999999999999999999999999999999999999999999 89999999987554
No 15
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-17 Score=151.57 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+.+.|+|.+ ++||.+||++|++..|+|+++|||||+|++|+|+.+|++|+|++|++|+|+++.+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEP-SNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp -CEEEECTTCCEEEECCCT-TSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999986543
No 16
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.69 E-value=4.3e-17 Score=144.43 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+||++.|+++.|.+.| ++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|||..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p-~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLG-EDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEET-TSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC-cCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 7999999999999999998 9999999999999999999999999999999999999999999999999963
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.67 E-value=1.2e-16 Score=142.07 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKN 79 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~~ 79 (764)
|+|+||+++|+.+.|+|.+ ++||.+||++|++.+++|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~-~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp CEEEEEETTCCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred cEEEEEeCCCCEEEEEECC-CCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999999877643
No 18
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.1e-17 Score=141.58 Aligned_cols=73 Identities=23% Similarity=0.360 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCCcHHHHHHHH-HhhcCCCCCCeEEEECCeeCCCCcCccccCc-CCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVL--SKRTLISDMKTQI-ENTLDVPVDKQRLFYKGKQLEDEYMLFDYNV-NLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~--~~~~TV~~LK~~I-~~~~gip~~~QrLif~GK~L~D~~tL~dy~I-~~g~tI~Lvvr~ 74 (764)
|+|+||+++|+++.|+|+ + ++||.+||++| ++..|+|+++|||||+||+|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~-~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSP-SDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCT-TCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCC-CCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988865 7 99999999999 9999999999999999999999999999999 799999999864
No 19
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4e-16 Score=139.20 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhh---cCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENT---LDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~---~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++. .|+|+++|||+|+|++|+|+.+|++|+|++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~-~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDP-EETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCT-TSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECC-CCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 9999999999999999997 99999999999999 789999999999999999999999999999999999997543
No 20
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=1.3e-16 Score=139.48 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCee-CCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQ-LEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~-L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||+++|+++.++|++ ++||.+||++|++..|+|+++|||+|+|++ |+|+.+|++|+|++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDY-RDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECT-TSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECC-CChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999997 999999999999999999999999999999 99999999999999999999986
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.6e-16 Score=134.58 Aligned_cols=74 Identities=39% Similarity=0.736 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEE-EEE-EcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKN-CVL-VLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~-~l~-v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||+++|+++ .++ |.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~-~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSR-LTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEECCCCEEEEEeccCC-CCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 8999999999985 999 997 9999999999999999999999999999999999999999999999999999863
No 22
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.65 E-value=3.6e-16 Score=132.09 Aligned_cols=75 Identities=27% Similarity=0.471 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~-~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEP-TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECC-CChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999998754
No 23
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.65 E-value=1.9e-16 Score=135.90 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.||++|+|++|++|||++++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~-~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKM-TTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECC-CChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 7999999999999999997 99999999999999999999999999999999999999999999999999998754
No 24
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=2.3e-16 Score=141.93 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEE--EEcCCCCcHHHHHHHH-HhhcCCCCCCeEEEECCeeCCCCcCccccCc-CCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCV--LVLSKRTLISDMKTQI-ENTLDVPVDKQRLFYKGKQLEDEYMLFDYNV-NLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l--~v~~~~~TV~~LK~~I-~~~~gip~~~QrLif~GK~L~D~~tL~dy~I-~~g~tI~Lvvr~~ 75 (764)
|+|+||+++|+.+.+ +|.+ ++||.+||++| ++..|+|+++|||||+|++|+|+.+|++|+| ++|++|+||++.|
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~-~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSP-SDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECT-TCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEecCC-CChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 799999999998777 5557 99999999999 8889999999999999999999999999999 9999999999653
No 25
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.65 E-value=2.7e-16 Score=138.94 Aligned_cols=73 Identities=32% Similarity=0.558 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECC-CCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999986
No 26
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.6e-16 Score=143.21 Aligned_cols=71 Identities=21% Similarity=0.111 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+||++.|+++.|+|.+ ++||.+||++|+++.|+|+++|||+|+||+|+|+.||++|+|+++++|||+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p-~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNT-DDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEET-TSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 7999999999999999998 9999999999999999999999999999999999999999999999999974
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.64 E-value=2.6e-16 Score=137.36 Aligned_cols=75 Identities=27% Similarity=0.485 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEP-TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECC-CCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999998764
No 28
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.9e-16 Score=135.34 Aligned_cols=77 Identities=40% Similarity=0.777 Sum_probs=73.0
Q ss_pred CEEEEEeCCC-CEEEE-EEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDG-SKNCV-LVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~G-k~~~l-~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++| +++.| +|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~-~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSR-KATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECT-TCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCC-CCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 8999999999 69999 5997 9999999999999999999999999999999999999999999999999999987653
No 29
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.64 E-value=6e-16 Score=134.31 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhh---cCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENT---LDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~---~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++. .|+|+++|||+|+|++|+|+.+|++|+|++|++|||+++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~-~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEP-DETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp EEEEEEETTSCEEEEEECT-TSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC---
T ss_pred EEEEEEECCCCEEEEEECC-CCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 7999999999999999997 99999999999998 889999999999999999999999999999999999997643
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.64 E-value=7.4e-16 Score=130.17 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.+++.+ ++||.+||++|++..++|+++|||+|+|+.|+|+.+|++|+|++|++|||++|+.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~-~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECC-CCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999998754
No 31
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=9.4e-16 Score=141.93 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHh------hcCC--CCCCeEEEECCeeCCCCcCccccCcCCC--CEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIEN------TLDV--PVDKQRLFYKGKQLEDEYMLFDYNVNLN--DVIQL 70 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~------~~gi--p~~~QrLif~GK~L~D~~tL~dy~I~~g--~tI~L 70 (764)
|+|+||+++|++++|+|++ ++||.+||++|++ ..++ |+++|||||+||+|+|+.||++|+|+.+ .+|||
T Consensus 17 m~I~vKtl~G~t~~lev~~-s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSP-NDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECT-TCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECC-cCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 7999999999999999998 9999999999999 5574 6999999999999999999999999876 57899
Q ss_pred EEeecCCC
Q psy11302 71 MIKADIDK 78 (764)
Q Consensus 71 vvr~~~~~ 78 (764)
++|+..+.
T Consensus 96 vlr~~~~~ 103 (116)
T 1wgh_A 96 VARETLPE 103 (116)
T ss_dssp EECSSCSS
T ss_pred EccCCCCC
Confidence 98876543
No 32
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.63 E-value=3.6e-16 Score=140.13 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|+++.|+|+++|||||+|++|+|+.||++|+|++|++|||++++.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~-~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKM-TTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 7999999999999999997 99999999999999999999999999999999999999999999999999998754
No 33
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5e-16 Score=139.32 Aligned_cols=75 Identities=32% Similarity=0.538 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999998764
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=135.69 Aligned_cols=71 Identities=31% Similarity=0.576 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGA-QMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEET-TCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECC-CCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7999999999999999997 999999999999999999999999999999999999999999 8999999986
No 35
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.2e-16 Score=134.40 Aligned_cols=77 Identities=31% Similarity=0.491 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|+++++|||++|+....
T Consensus 4 m~i~vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp CEEEEECGGGCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999987653
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=8.1e-16 Score=137.23 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCC-cCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDE-YMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~-~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||++.| ++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+ .+|++|+|++|++|+|++|++++.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDR-TETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECT-TCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECC-CCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 7999999988 89999997 9999999999999999999999999999999999 999999999999999999987653
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=7.4e-16 Score=135.56 Aligned_cols=76 Identities=30% Similarity=0.513 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++|+.++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEP-SDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCT-TSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECC-CChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999987664
No 38
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1e-15 Score=133.60 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|+++++|||++|+.++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINP-NSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECS-SSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCC-CChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999998765
No 39
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=136.77 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++++.++.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRL-TQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEETTSCEEEEEEES-SSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred EEEEEECCCCCEEEEEECC-CCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 7999999999999999997 9999999999999999999999999999999999999999999999999999876543
No 40
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=9.4e-16 Score=132.64 Aligned_cols=76 Identities=30% Similarity=0.487 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|+++++|||++|+...
T Consensus 4 m~i~vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECC-CCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999998665
No 41
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=9.6e-16 Score=136.04 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCCcHHHHHHHHHhhc--CCCCCCeEEEECCeeCCCCcCcccc--CcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGS--KNCVLVLSKRTLISDMKTQIENTL--DVPVDKQRLFYKGKQLEDEYMLFDY--NVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk--~~~l~v~~~~~TV~~LK~~I~~~~--gip~~~QrLif~GK~L~D~~tL~dy--~I~~g~tI~Lvvr~ 74 (764)
|+|+||+++|+ .+.|++.+ ++||.+||++|++.. ++|+++|||||+|++|+|+.+|++| +|+++++|||++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~-~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDR-GWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCT-TSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEEEeCCCCeEEEEEecCC-CCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 89999999998 67777777 999999999999998 9999999999999999999999999 99999999999987
Q ss_pred cCCC
Q psy11302 75 DIDK 78 (764)
Q Consensus 75 ~~~~ 78 (764)
.++.
T Consensus 87 ~gg~ 90 (93)
T 1wgd_A 87 KSGP 90 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 42
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=8.8e-16 Score=139.83 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||+++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRS-TDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECT-TSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999997 999999999999999999999999999999999999999999999999999986554
No 43
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.7e-15 Score=137.81 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+ +.|+|.+ ++||.+||++|++..++++++|||+|+|++|+|+.+|++|+|++|++|||++++...+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTD-TCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEET-TCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECC-CCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 79999999886 7999997 9999999999999999999999999999999999999999999999999999876653
No 44
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.5e-15 Score=135.17 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCC-cCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDE-YMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~-~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++.. +++|||||+|++|+|+ .+|++|+|++|++|||+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~-~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARP-EDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECS-SSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7999999999999999997 999999999999987 9999999999999999 99999999999999999876543
No 45
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=130.99 Aligned_cols=73 Identities=34% Similarity=0.606 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+.+|+.+.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+
T Consensus 8 m~i~vk~~~g~~~~~~v~~-~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPE-DELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECS-SCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7999999999999999997 999999999999999999999999999999999999999999999999999875
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.61 E-value=1.9e-15 Score=135.25 Aligned_cols=78 Identities=29% Similarity=0.526 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKN 79 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~~ 79 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++++.++.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~-~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD 78 (98)
T ss_dssp CEEEEEETTSCEEEEECCT-TCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred CEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999999765543
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=6.3e-16 Score=140.70 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC---------------CCeEEEECCeeCC-CCcCccccCcCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPV---------------DKQRLFYKGKQLE-DEYMLFDYNVNL 64 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~---------------~~QrLif~GK~L~-D~~tL~dy~I~~ 64 (764)
|+|+||+++|+++.|+|.+ ++||++||++|++.+++|+ ++|+|||+||+|. |+.||++|+|++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~-~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQ-NATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp EEEEEECSSSCEEEEEECT-TCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred EEEEEEecCCCEEEEEECC-CChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 8999999999999999997 9999999999999999987 4679999999996 679999999999
Q ss_pred CCEEEEEEeecCC
Q psy11302 65 NDVIQLMIKADID 77 (764)
Q Consensus 65 g~tI~Lvvr~~~~ 77 (764)
|++|||+.++...
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999998664
No 48
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=3.1e-15 Score=139.96 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCCcHHHHHHHH-----HhhcCCCC--CCeEEEECCeeCCCCcCccccCcCCC------C
Q psy11302 1 MYVKIRSLDGSKN-CVLVLSKRTLISDMKTQI-----ENTLDVPV--DKQRLFYKGKQLEDEYMLFDYNVNLN------D 66 (764)
Q Consensus 1 MqI~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I-----~~~~gip~--~~QrLif~GK~L~D~~tL~dy~I~~g------~ 66 (764)
|+|+||+++|+.+ .+++++ ++||.+||++| ++..++|+ ++|||||+||+|+|+.||++|+|+.| .
T Consensus 17 ~~i~~kt~~G~~i~~l~v~p-sdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~ 95 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPD-ATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95 (126)
T ss_dssp EEEEEEETTSCEEEEEEECT-TCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCE
T ss_pred EEEEEEECCCCEEEeeecCc-cCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcE
Confidence 7899999999988 799998 99999999999 55678987 89999999999999999999999998 6
Q ss_pred EEEEEEeecCCC
Q psy11302 67 VIQLMIKADIDK 78 (764)
Q Consensus 67 tI~Lvvr~~~~~ 78 (764)
++||++|+..+.
T Consensus 96 tmhlVlrl~g~~ 107 (126)
T 1se9_A 96 TMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeccCCcc
Confidence 899999987653
No 49
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.59 E-value=2.5e-15 Score=137.99 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.|+|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCC-CCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999999764
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.6e-15 Score=135.28 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred EEEEEeCC----CCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 2 YVKIRSLD----GSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 2 qI~VKtl~----Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
.|.|+..+ ++++.|+|.+ ++||.+||++|++.+|+|+++|||||+||+|+|+.||++|+|++|++| +++++.+.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~-~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRL-HITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEES-SSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCC-cCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 36777777 7899999998 999999999999999999999999999999999999999999999999 55555443
No 51
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.37 E-value=1e-16 Score=136.32 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.+++.+ ++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDS-DTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 9999999999999999997 99999999999999999999999999999999999999999999999999998753
No 52
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=139.57 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHh------hcCC--CCCCeEEEECCeeCCCCcCccccCcCCCC--EEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIEN------TLDV--PVDKQRLFYKGKQLEDEYMLFDYNVNLND--VIQL 70 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~------~~gi--p~~~QrLif~GK~L~D~~tL~dy~I~~g~--tI~L 70 (764)
|+|+||+++|++++|+|++ ++||.+||++|++ +.++ ++++|||||+||+|+|+.||++|+|+.++ +|||
T Consensus 18 m~I~vktl~G~~~~lev~~-s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSP-NDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp EEEEEECTTSCEEEEEECT-TSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCC-ccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 7899999999999999998 9999999999999 6787 49999999999999999999999999777 7899
Q ss_pred EEeecCC
Q psy11302 71 MIKADID 77 (764)
Q Consensus 71 vvr~~~~ 77 (764)
++|+..+
T Consensus 97 v~r~~~~ 103 (125)
T 2gow_A 97 VARETLP 103 (125)
T ss_dssp EECSCCS
T ss_pred EecCCCC
Confidence 9987654
No 53
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.58 E-value=4.7e-15 Score=125.98 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+ +|+.+.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~-~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAP-ESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECC-CCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899999 89999999997 999999999999999999999999999999999999999999999999998753
No 54
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.57 E-value=5.9e-15 Score=145.41 Aligned_cols=77 Identities=31% Similarity=0.519 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCT-TCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCC-CCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 9999999999999999997 9999999999999999999999999999999999999999999999999999987654
No 55
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=133.07 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+ |+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++|+.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTG-QETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCS-SCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCC-CCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999999 8999999997 99999999999999999999999999999999999999999999999999998754
No 56
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.8e-15 Score=133.70 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+ +.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++++++.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTD-TCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEET-TCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECC-CCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 79999999886 7999997 999999999999999999999999999999999999999999999999999987654
No 57
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=3e-15 Score=133.41 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+. |+.+.|+|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|++|++|||++++.+.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAE-NSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEET-TCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECC-CCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 79999999 9999999997 999999999999999999999999999999999999999999999999999987654
No 58
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=7.1e-15 Score=132.89 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=70.9
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCC-cCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDG----SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDE-YMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~G----k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~-~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||++.+ +.+.++|.+ ++||.+||++|++.+|+|+++|||+|+|++|+|+ .+|++|+|++|++|||+.+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNP-DFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECT-TCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCC-CCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 8999999755 789999997 9999999999999999999999999999999988 699999999999999998875
Q ss_pred CCC
Q psy11302 76 IDK 78 (764)
Q Consensus 76 ~~~ 78 (764)
.++
T Consensus 87 gg~ 89 (102)
T 1v5o_A 87 VGL 89 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 59
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=132.12 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+. |+.+.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++++++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPE-NSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECS-CCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECC-CCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 79999999 8999999997 99999999999999999999999999999999999999999999999999998654
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.56 E-value=4.6e-15 Score=137.29 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCE-EEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcC-------CCCEEEEEE
Q psy11302 1 MYVKIRSLDGSK-NCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVN-------LNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~-~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~-------~g~tI~Lvv 72 (764)
|+|||+...+++ +.|+|.+ ++||.+||++|+.+.|||+++|||||+||+|+|++||++|||+ .+++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~-sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKE-SSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEET-TSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCC-cChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 788888887864 7999998 9999999999999999999999999999999999999999999 799999999
Q ss_pred e
Q psy11302 73 K 73 (764)
Q Consensus 73 r 73 (764)
|
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 9
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=132.57 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..++|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECT-TCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCC-CCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 7999999999999999997 99999999999999999999999999999999999999999999999999998764
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.54 E-value=1.1e-14 Score=141.17 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++
T Consensus 82 m~i~vk~~~g~~~~~~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRL-TQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECT-TSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCC-CCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7999999999999999997 999999999999999999999999999999999999999999999999999998664
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-14 Score=133.25 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
++|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|++++.++.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECC-CCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 5899999999999999997 9999999999999999999999999999999999999999999999999999987654
No 64
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.3e-14 Score=136.04 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||++ |+.+.|+|.+ ++||.+||++|++..|+|+++|||||+|++|+|+.+|.+|+|++|++|+|++++.++.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPE-NSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECT-TCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECC-CCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 79999999 9999999997 9999999999999999999999999999999999999999999999999999876553
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.53 E-value=1.2e-14 Score=134.08 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=69.7
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCC-------CCEEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNL-------NDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~-------g~tI~Lvv 72 (764)
|.|||+...++ ++.+++.+ ++||.+||++|+...|+|+++|||||+||+|+|++||++|||++ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~-sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKE-SSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEET-TSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCC-CChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 78899888787 56889997 99999999999999999999999999999999999999999999 99999999
Q ss_pred eec
Q psy11302 73 KAD 75 (764)
Q Consensus 73 r~~ 75 (764)
|..
T Consensus 80 r~~ 82 (118)
T 4ajy_B 80 RAD 82 (118)
T ss_dssp CCS
T ss_pred ecC
Confidence 963
No 66
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.53 E-value=9.7e-15 Score=146.09 Aligned_cols=77 Identities=29% Similarity=0.473 Sum_probs=74.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~-s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCC-CCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999987653
No 67
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.53 E-value=7.7e-15 Score=132.27 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=64.4
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCCcHHHHHHHHHhh-cCCC-CCCeEEEECCeeCCCCcCcccc--CcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGS--KNCVLVLSKRTLISDMKTQIENT-LDVP-VDKQRLFYKGKQLEDEYMLFDY--NVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk--~~~l~v~~~~~TV~~LK~~I~~~-~gip-~~~QrLif~GK~L~D~~tL~dy--~I~~g~tI~Lv 71 (764)
|+|+||+++|+ .+.|+|.+ ++||.+||++|++. .|+| +++|||||+||+|+|+.+|++| +|+++++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~-~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFL-NWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECT-TSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCC-CCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 79999999998 67899987 99999999999996 4655 5999999999999999999999 99999999985
No 68
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=1.3e-15 Score=147.54 Aligned_cols=77 Identities=31% Similarity=0.519 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+++.|+|++ ++||.+||++|++.+|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECC-CCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 9999999999999999997 9999999999999999999999999999999999999999999999999999987764
No 69
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.52 E-value=1e-15 Score=144.02 Aligned_cols=77 Identities=31% Similarity=0.515 Sum_probs=0.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+||+++|+++.|+|++ ++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVES-SDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCC-CCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999987764
No 70
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.51 E-value=1.9e-14 Score=132.01 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=73.2
Q ss_pred CEEEEEeC---CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSL---DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl---~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||++ +|+.+.++|.+.++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++++.++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 78999999 899999999833899999999999999999999999999999999999999999999999999998766
Q ss_pred C
Q psy11302 78 K 78 (764)
Q Consensus 78 ~ 78 (764)
.
T Consensus 108 k 108 (111)
T 1we6_A 108 P 108 (111)
T ss_dssp S
T ss_pred C
Confidence 4
No 71
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3e-14 Score=127.59 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKN-CVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||. .|+.+ .|++.+ ++||.+||++|++..|+|+++|||+|.|++|+|+ +|++|+|++|++|+||....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~-~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNT-DEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEES-SSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECC-CCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 7899996 68999 699997 9999999999999999999999999999999999 99999999999999997543
No 72
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3e-14 Score=129.96 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=69.3
Q ss_pred CEEEEEeCCC---CEEEEE--------EcCCC-CcHHHHHHHHHhhc--CCCCCC-eEEEECCeeCCCCcCccccCcCCC
Q psy11302 1 MYVKIRSLDG---SKNCVL--------VLSKR-TLISDMKTQIENTL--DVPVDK-QRLFYKGKQLEDEYMLFDYNVNLN 65 (764)
Q Consensus 1 MqI~VKtl~G---k~~~l~--------v~~~~-~TV~~LK~~I~~~~--gip~~~-QrLif~GK~L~D~~tL~dy~I~~g 65 (764)
|+|+||++++ +.+.|+ |.+ + +||.+||++|++.. |+|+++ |||||+|++|+|+.+|++|+|++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~-~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g 91 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSL-GGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG 91 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCC-CCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCc-ccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence 7899999999 888998 443 5 99999999999999 999999 999999999999999999999999
Q ss_pred CEEEEEEeecC
Q psy11302 66 DVIQLMIKADI 76 (764)
Q Consensus 66 ~tI~Lvvr~~~ 76 (764)
++|||+++.++
T Consensus 92 ~~i~lv~~~~~ 102 (107)
T 1x1m_A 92 STVHVLRKSWS 102 (107)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEeCCCC
Confidence 99999997643
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.50 E-value=4e-14 Score=128.51 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=68.3
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCc-CCCCEEEEEEe
Q psy11302 1 MYVKIRSLDG--SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNV-NLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~G--k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I-~~g~tI~Lvvr 73 (764)
|+|+|++..+ .+++|+|.+ ++||.+||++|++++|+||++|||||+|++|+|+.||++||| ++|++|||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~p-s~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRP-DMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECC-cChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 7899999985 688999998 999999999999999999999999999999999999999999 69999999984
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.49 E-value=5.8e-14 Score=136.06 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE-E-CCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF-Y-KGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi-f-~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++.+|+|+++|||+ | +|++|+|+.+|++|+|++|++|||+++
T Consensus 3 m~i~vk~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSS-SMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCT-TCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCC-CCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 8999999999999999998 9999999999999999999999999 9 899999999999999999999999997
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=138.06 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|+++++|||++++..
T Consensus 21 m~i~Vk~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 8999999999999999997 99999999999999999999999999999999999999999999999999998654
No 76
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8e-14 Score=128.08 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=69.5
Q ss_pred CEEEEE-eCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIR-SLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VK-tl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|.|+|+ ...++.+++++.+ +.||.+||++|++.+++|+++|||||+||+|+|+.||.+|||++|.+|||+++...+
T Consensus 16 itvkv~l~~~~~k~tv~v~~-d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKV-DTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEEETTTCCEEEEEECS-SSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEEcCCCcEEEEEeCC-CCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 356666 6678899999998 999999999999999999999999999999999999999999999999999986544
No 77
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.5e-14 Score=130.75 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+ .|+.+.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAP-ESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCT-TSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCC-CCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5788998 89999999997 999999999999999999999999999999999999999999999999999753
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=1.3e-13 Score=151.08 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHh---hcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEE-EEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIEN---TLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVI-QLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~---~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI-~Lvvr~~~ 76 (764)
|+|+||+++|+++.|+|.+ ++||.+||++|+. +.|+|+++|||||+||+|+|+++|++|+|++|++| ||+.|++.
T Consensus 8 M~I~VKtl~Gk~~~leV~~-~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEP-DETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCT-TCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCC-CChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 8999999999999999997 9999999999999 57799999999999999999999999999999999 55555544
Q ss_pred C
Q psy11302 77 D 77 (764)
Q Consensus 77 ~ 77 (764)
.
T Consensus 87 ~ 87 (368)
T 1oqy_A 87 G 87 (368)
T ss_dssp S
T ss_pred C
Confidence 3
No 79
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.47 E-value=7e-14 Score=123.55 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEE-EEcCCCCcHHHHHHHHHhhcCCCCCCeEEE---ECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCV-LVLSKRTLISDMKTQIENTLDVPVDKQRLF---YKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l-~v~~~~~TV~~LK~~I~~~~gip~~~QrLi---f~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||. .|+++.| ++.+ ++||.+||++|++..|+|+++|||+ |+|++|+|+.+|++|+|++|++|+||..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~-~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSE-DDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCS-SSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCC-CCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899997 6899999 9997 9999999999999999999999999 9999999999999999999999999864
No 80
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.2e-13 Score=122.25 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=66.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCC-----CcHHHHHHHHHhhcCCCCCCeEEEECCeeCCC-CcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKR-----TLISDMKTQIENTLDVPVDKQRLFYKGKQLED-EYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~-----~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D-~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+ .|+.+.|++.+ + +||.+||++|++..|+|+++|||+|+|++|+| +.+|++|+|++|++|||+.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~-~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTS-QQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECC-CSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECC-CcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 7899999 48899999997 5 99999999999999999999999999999998 668999999999999999754
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.45 E-value=9.2e-14 Score=136.66 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+++.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecC-CCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 6899999999999999997 99999999999999999999999999999999999999999999999999998764
No 82
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.45 E-value=1.9e-13 Score=126.20 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=71.1
Q ss_pred CEEEEEeC----------CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 1 MYVKIRSL----------DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 1 MqI~VKtl----------~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
++|+|+.. +|+++.|+|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~l 104 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPL-TDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHL 104 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECS-CSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECC-CCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEE
Confidence 46788875 47899999997 99999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy11302 71 MIKADIDK 78 (764)
Q Consensus 71 vvr~~~~~ 78 (764)
++|+.++.
T Consensus 105 v~rl~GGk 112 (115)
T 1we7_A 105 ALKERSGP 112 (115)
T ss_dssp EECCCSCC
T ss_pred EEEcCCCC
Confidence 99987754
No 83
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.44 E-value=2.4e-13 Score=129.88 Aligned_cols=74 Identities=31% Similarity=0.552 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+||+++|+.+.+++.+ ++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+|++|++|||+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECC-CCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 9999999999999999997 9999999999999999999999999999999999999999999999999998754
No 84
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.44 E-value=2.4e-13 Score=129.85 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+||+++|+.+.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|||++|+.+
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCC-CCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 6899999999999999997 99999999999999999999999999999999999999999999999999998764
No 85
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=2.8e-13 Score=118.49 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=66.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
+++++++|+.+.+++.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~-~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSP-DCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECT-TSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECC-CCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 56788899999999997 99999999999999999999999999999999999999999999999999863
No 86
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.1e-13 Score=123.53 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=64.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+|+||. .|+++.|++.+ ++||.+||++|++.+|+|+++|||+|.|++| |+.+|++|+|+++++|||+.+
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~-~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPL-DSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEEE-TTEEEEEEECT-TSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEEE-CCEEEEEEECC-CCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 6899984 68999999997 9999999999999999999999999999999 555999999999999999864
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.40 E-value=3.3e-14 Score=141.61 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=1.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDKNY 80 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~~~ 80 (764)
|+|+||+++|++++|+|++ ++||.+||++|++.+|||+++|||||+|++|+|+.||+ ++++|||++|+.++...
T Consensus 1 MqI~VKtL~GktitLeV~~-sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~k 74 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQ-GTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKK 74 (189)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CEEEEEcCCCCEEEEEECC-cChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCccc
Confidence 9999999999999999998 99999999999999999999999999999999999998 89999999999876543
No 88
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.6e-13 Score=121.56 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE--CCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY--KGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif--~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|+++++++.|+++.|+|++ ++||.+||++|++++||||++|||+| .|+ |+|+.+|++|+|+.|++|||+++
T Consensus 9 m~~~~vk~~Gk~~~v~v~~-~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLED-TCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEET-TSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECC-CCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 7889999999999999998 99999999999999999999999997 676 99999999999999999999874
No 89
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=120.00 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=63.8
Q ss_pred CEEEEEeCCCCEE--EE-EEcCCCCcHHHHHHHHHhh-cCCCCCCeEEEEC--CeeCCCCcCccccCcCCCCEEEE
Q psy11302 1 MYVKIRSLDGSKN--CV-LVLSKRTLISDMKTQIENT-LDVPVDKQRLFYK--GKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 1 MqI~VKtl~Gk~~--~l-~v~~~~~TV~~LK~~I~~~-~gip~~~QrLif~--GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
|+|+||++.|+++ .| +|.+ ++||.+||++|++. .++||++|||+|. ||+|+|+.||++|+|+++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~-~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEP-HATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECS-SCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCC-CCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998775 58 8997 99999999999995 8999999999977 99999999999999999999876
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-13 Score=121.98 Aligned_cols=55 Identities=38% Similarity=1.004 Sum_probs=50.0
Q ss_pred CCccCCCcc-CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 310 ETKHCKDCG-CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 310 ~~~~c~~c~-C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.+|+|.++. |.+|+...+.+.||+||.|+++||++||.|||..+| .++|||+.|.
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~ 64 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKCI 64 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCC-SSCCCCHHHH
T ss_pred chhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCC-CCCcCCccCc
Confidence 456666665 999998887889999999999999999999999999 8999999997
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.35 E-value=3.1e-13 Score=107.03 Aligned_cols=48 Identities=48% Similarity=1.246 Sum_probs=45.2
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.|.+|++.++++.||+||.|+++||++|++|||.++| .|+|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P-~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVP-DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCC-SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCC-CCcEECcCccc
Confidence 3899999888889999999999999999999999999 89999999974
No 92
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=3.1e-13 Score=115.48 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=61.1
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
+.+.+.|+||+++|.+|++++|||+||..||.+|+..+... ||.||..+... ++.+|..|+++|+.|.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~---CP~C~~~~~~~--~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKT---CPKSQETLLHA--GLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCB---CTTTCCBCSSC--CCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCC---CCCCcCCCChh--hCccCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999865555 99999999876 6889999999998874
No 93
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.34 E-value=3.3e-13 Score=124.61 Aligned_cols=68 Identities=31% Similarity=0.916 Sum_probs=57.3
Q ss_pred cCCCCCCCCcC-------CcCCccCCCcc-CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 297 RQIVPECTTCN-------DVETKHCKDCG-CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 297 r~~~~~C~~C~-------~~~~~~c~~c~-C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+..+++|..-. ....|.|.+|. |.+|++..+++.||+||.|+++||++||.|||..+| .|+|||+.|.
T Consensus 31 ~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P-~g~W~C~~C~ 106 (114)
T 2kwj_A 31 RSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPP-EGSWSCHLCW 106 (114)
T ss_dssp CEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCC-SSCCCCHHHH
T ss_pred CccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCC-CCCeECcccc
Confidence 45555555432 22568888884 999999988999999999999999999999999999 8999999997
No 94
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.34 E-value=1.4e-12 Score=139.30 Aligned_cols=73 Identities=32% Similarity=0.560 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+||+++|+.+.++|.+ ++||.+||++|++..|+|+++|||+|+|++|+|+.+|++|+|+++++|||++|+
T Consensus 234 MqI~VKtl~Gk~~~leV~~-s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECT-TCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECC-CCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999999999997 999999999999999999999999999999999999999999999999999886
No 95
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.30 E-value=5.2e-12 Score=112.95 Aligned_cols=70 Identities=10% Similarity=0.054 Sum_probs=62.7
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC--Ce---eC-CCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDG--SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK--GK---QL-EDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~G--k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~--GK---~L-~D~~tL~dy~I~~g~tI~Lv 71 (764)
+.|+|+...+ +.+++++.+ ++||++||++|+..+|+||++|||+|. |+ +| +|+.+|++|+|++|++|||+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~-~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAK-DLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEET-TCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCc-cCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 3678887655 478999997 999999999999999999999999998 45 55 89999999999999999987
No 96
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=114.58 Aligned_cols=72 Identities=19% Similarity=0.629 Sum_probs=61.3
Q ss_pred HhhhcccccccccccccCceecC-CCCcchHhHHHHHHhhcC-CCcCCCcccccccccccCCCCccHHHHHHHHHhCC
Q psy11302 683 EHIQEKFLCIICQELVYKPITLD-CVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNKSCLETHSNDALQSILSTLFP 758 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~-CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfP 758 (764)
+.+.+.+.|+||+++|.+|++++ |||+||..||..|+.... .. ||.||..+.... .+.+|..|.++++.+..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~---CP~Cr~~~~~~~-~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT---CPTCHQNDVSPD-ALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCC---CTTTCCSSCCTT-SCEECHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCc---CcCCCCcCCCcc-ccCcCHHHHHHHHHHHH
Confidence 34678999999999999999999 999999999999997543 44 999999974322 68999999999998764
No 97
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.29 E-value=9.9e-13 Score=109.79 Aligned_cols=48 Identities=27% Similarity=0.677 Sum_probs=43.0
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
...|.+|+ +.++||+||.|+++||++||+|||..+| .++|||+.|...
T Consensus 12 ~~~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred CCCcCCCC---CCCeEEECCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 34599998 4578999999999999999999999999 999999999843
No 98
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=1.9e-12 Score=113.31 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=61.9
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
..+.++|.|+||+++|.+||+++|||+||+.||..|+... .. ||.|+..+... ++.+|..|+++|+.+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-~~---cP~~~~~l~~~--~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PT---DPFNRQMLTES--MLEPVPELKEQIQAWM 77 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-SB---CTTTCCBCCGG--GCEECHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-CC---CCCCcCCCChH--hcchHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999864 44 99999999876 7999999999998874
No 99
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.28 E-value=2.3e-12 Score=117.58 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=66.1
Q ss_pred CEEEEEeCCCCEEEEEEc-CCCCcHHHHHHHHHhhcCCCCCCeEEEECCe-----------e----CCCCcCccccCcCC
Q psy11302 1 MYVKIRSLDGSKNCVLVL-SKRTLISDMKTQIENTLDVPVDKQRLFYKGK-----------Q----LEDEYMLFDYNVNL 64 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~-~~~~TV~~LK~~I~~~~gip~~~QrLif~GK-----------~----L~D~~tL~dy~I~~ 64 (764)
|+|+||+.+|+. .|+|+ + ++||.+||++|++.+++|+++|+|+|.|+ + |+|+.+|++|+|++
T Consensus 8 M~irvrs~~G~~-~v~v~~~-~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGP-HITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCT-TSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEECCCCCE-EEEECCC-CCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 899999999976 78998 7 99999999999999999999999999998 4 58999999999999
Q ss_pred CCEEEEEEe
Q psy11302 65 NDVIQLMIK 73 (764)
Q Consensus 65 g~tI~Lvvr 73 (764)
|++|||+..
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999999864
No 100
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.28 E-value=4.2e-12 Score=111.51 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=60.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE-------CCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY-------KGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif-------~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
.+.+...+.+++ ++||++||++|+..+|+||++||||| .|++|+|+.+|++|+|++|++|||+-+.
T Consensus 12 ~~~~~~E~r~~~-s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 12 SRMRVPEKRYGL-AQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CSCCEEEEEEET-TSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCeEEEEEcCc-cCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 456667888987 99999999999999999999999996 6999999999999999999999999753
No 101
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.28 E-value=1.8e-12 Score=106.61 Aligned_cols=48 Identities=40% Similarity=1.099 Sum_probs=43.3
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
++..|.+|+ +.+.||+||.|+++||++||.|||.++| .|+|+|+.|..
T Consensus 8 ~~~~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIP-NGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTC---CCSSCBCCSSSCCCBCSSSSSSCCSSCC-SSCCCCTTTTT
T ss_pred CCCcCCCCC---CCCCEEEcCCCCHHHcccccCCCcCcCC-CCccCChhhcC
Confidence 455699998 4578999999999999999999999999 89999999984
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.27 E-value=2.5e-12 Score=112.85 Aligned_cols=49 Identities=33% Similarity=0.938 Sum_probs=43.4
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
++..|.+|+. ++.+|+||.|+++||++||.|||.++| .|+|+|+.|...
T Consensus 24 n~~~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P-~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCC-SSSCCCCSCCCC
T ss_pred CCCcCcCcCC---CCCEEECCCCCCceecccCCCCCCCCc-CCCcCCccccCC
Confidence 3445999994 468999999999999999999999999 999999999843
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.27 E-value=2.4e-12 Score=118.53 Aligned_cols=56 Identities=30% Similarity=0.964 Sum_probs=48.6
Q ss_pred CCccCCCcc-CccCCCC-CCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 310 ETKHCKDCG-CSICAGK-TSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 310 ~~~~c~~c~-C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
..|.|.+|+ |.+|+.. .+++.+|+||.|+++||++||+|||.++| +|+|+|+.|+.
T Consensus 54 ~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P-~~~W~C~~C~~ 111 (112)
T 3v43_A 54 LRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMP-KGMWICQICRP 111 (112)
T ss_dssp SCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCC-SSCCCCTTTSC
T ss_pred cccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCC-CCCeECCCCCC
Confidence 456666663 9999975 45679999999999999999999999999 89999999984
No 104
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=115.45 Aligned_cols=70 Identities=24% Similarity=0.530 Sum_probs=58.8
Q ss_pred HHHHhhhcccccccccccccCcee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHH
Q psy11302 680 EVLEHIQEKFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILS 754 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe 754 (764)
.....+.+.+.|+||++++.+|++ ++|||+||..||..|+...... ||.||..+... .+..|..+.++++
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~---CP~Cr~~~~~~--~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQ---CPHCRAPLQLR--ELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSB---CTTTCCBCCGG--GCEECTTHHHHHH
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCC---CCCCCCcCCHH--HhHhhHHHHHHHH
Confidence 456678899999999999999999 9999999999999999987545 99999999875 5666665555443
No 105
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.26 E-value=2.2e-12 Score=116.33 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=64.0
Q ss_pred hhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCCCCC
Q psy11302 684 HIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGYSS 762 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg~~~ 762 (764)
.+.+.|.||||+++|.+||+++|||+||+.||..|+.. ... ||.|+..+... ++.+|..|.++|+.+.....+
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~---cP~~~~~l~~~--~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPT---DPFNRQTLTES--MLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSB---CSSSCCBCCTT--SSEECHHHHHHHHHHHHTTTC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCC---CCCCCCCCChh--hceECHHHHHHHHHHHHHhhh
Confidence 35789999999999999999999999999999999985 344 99999999876 799999999999988654443
No 106
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=1.1e-11 Score=110.52 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+||+.+|+.+.+.|.+ ++++..|+++++++.|+++++|||+|.|++|.++.|+++|++++||+|++++++.++
T Consensus 8 i~ikVk~~~g~~i~~~v~~-~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECC-CCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999997 999999999999999999999999999999999999999999999999999987665
No 107
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=6e-12 Score=114.38 Aligned_cols=75 Identities=28% Similarity=0.787 Sum_probs=64.8
Q ss_pred HHhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCccccccccccc--CCCCccHHHHHHHHHhCC
Q psy11302 682 LEHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSC--LETHSNDALQSILSTLFP 758 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~--~~~~vN~~L~~lIe~lfP 758 (764)
.+.+.+.+.|+||++++.+|+++ +|||+||..||..|+... .. ||.||..+.... ..+..|..|.++++.++|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~---CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KY---CPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SB---CTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-Cc---CcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 45678899999999999999998 999999999999999875 34 999999987531 146899999999999999
Q ss_pred CC
Q psy11302 759 GY 760 (764)
Q Consensus 759 g~ 760 (764)
+.
T Consensus 85 ~~ 86 (108)
T 2ckl_A 85 GL 86 (108)
T ss_dssp TH
T ss_pred hH
Confidence 74
No 108
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.23 E-value=5.3e-12 Score=113.49 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=61.5
Q ss_pred hhhcccccccccccccCceecCCC-CcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 684 HIQEKFLCIICQELVYKPITLDCV-HTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt~Cg-H~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
.+.++|.|+||+++|.+||+++|| |+||+.||.+|+... .. ||.||..+... ++.+|..|+++|+.+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-~~---cP~~~~~l~~~--~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QT---DPFNRSPLTMD--QIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CB---CTTTCSBCCTT--TSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-CC---CCCCCCCCChh--hceEcHHHHHHHHHHH
Confidence 457899999999999999999999 999999999999864 34 99999999876 7999999999999875
No 109
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.23 E-value=2.6e-12 Score=107.26 Aligned_cols=47 Identities=36% Similarity=1.051 Sum_probs=42.6
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
++..|.+|+. .+.||+||.|+++||++||.|||..+| .++|+|+.|.
T Consensus 7 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ppl~~~P-~g~W~C~~C~ 53 (66)
T 1xwh_A 7 NEDECAVCRD---GGELICCDGCPRAFHLACLSPPLREIP-SGTWRCSSCL 53 (66)
T ss_dssp CCCSBSSSSC---CSSCEECSSCCCEECTTTSSSCCSSCC-SSCCCCHHHH
T ss_pred CCCCCccCCC---CCCEEEcCCCChhhcccccCCCcCcCC-CCCeECcccc
Confidence 3455999994 478999999999999999999999999 8999999998
No 110
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.23 E-value=6e-12 Score=112.47 Aligned_cols=70 Identities=23% Similarity=0.659 Sum_probs=61.4
Q ss_pred HHHhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..+.+.+.+.|+||++.+.+|+++ +|||+||..|+..|+.... . ||.||..+... .+..|..|.++++.+
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~---CP~Cr~~~~~~--~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT-Q---CPTCCVTVTEP--DLKNNRILDELVKSL 85 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-B---CTTTCCBCCGG--GCEECHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC-C---CCCCCCcCChh--hCCcCHHHHHHHHHH
Confidence 455677889999999999999998 8999999999999998653 3 99999999875 689999999998865
No 111
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.22 E-value=1.7e-11 Score=109.98 Aligned_cols=70 Identities=9% Similarity=-0.030 Sum_probs=61.7
Q ss_pred EEEEEeCCC--CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCe---e----CCCCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDG--SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGK---Q----LEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~G--k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK---~----L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.|+|+.... +.+++++.+ ++||++||++|+..+|+||++|||+|.|+ + ++|+.+|++|+|++|++|||+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~-~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSP-QMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECT-TCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCC-CChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567776443 578999997 99999999999999999999999999883 3 4899999999999999999985
No 112
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-12 Score=115.81 Aligned_cols=55 Identities=35% Similarity=1.009 Sum_probs=49.3
Q ss_pred CccCCCcc-CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 311 TKHCKDCG-CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 311 ~~~c~~c~-C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.|.|.+|. |.+|++..+++.||+||.|+++||++||.|||..+| .++|+|+.|..
T Consensus 48 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P-~g~W~C~~C~~ 103 (111)
T 2ysm_A 48 GWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVP-TNGWKCKNCRI 103 (111)
T ss_dssp TCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCC-SSCCCCHHHHC
T ss_pred CccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCC-CCCcCCcCCcC
Confidence 45555554 999999988889999999999999999999999999 89999999974
No 113
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-12 Score=102.66 Aligned_cols=47 Identities=38% Similarity=1.154 Sum_probs=42.5
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
++..|.+|+. .+.||+||.|+++||++||.|||..+| .++|+|+.|.
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p-~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCC-CSSCCCHHHH
T ss_pred CCCCCccCCC---CCeEEEcCCCCcceECccCCCCcCCCC-CCceEChhhh
Confidence 4456999995 468999999999999999999999999 8999999996
No 114
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.20 E-value=2.5e-12 Score=105.32 Aligned_cols=47 Identities=38% Similarity=1.154 Sum_probs=42.7
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.+..|.+|+. .+.||+||.|+++||++|+.|||..+| .|+|+|+.|.
T Consensus 4 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCC-CSCCCCHHHH
T ss_pred CCCCCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCC-CCceEChhcc
Confidence 3456999995 478999999999999999999999999 8999999997
No 115
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.20 E-value=2.9e-12 Score=112.97 Aligned_cols=50 Identities=32% Similarity=0.862 Sum_probs=44.6
Q ss_pred CCccCccCCCCCC--CCCcEEEecCCCcccccccCCCCCC----CCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTS--PDKLIVCEECQHYYHIWCLKPPLES----VPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~--~~~ll~Cd~C~~~~H~~Cl~PpL~~----~P~~g~W~C~~C~ 365 (764)
.+..|.+|++..+ .+.||+||.|+++||++||.|||.. +| .|+|||+.|.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p-~g~W~C~~C~ 70 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDP-RLVWYCARCT 70 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCT-TCCCCCHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCC-CCCeeCcccc
Confidence 3456999998765 4789999999999999999999995 89 9999999998
No 116
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.6e-12 Score=104.21 Aligned_cols=47 Identities=34% Similarity=1.073 Sum_probs=42.6
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
+..|.+|+. .+.||+||.|+++||++||.|||.++| .++|+|+.|..
T Consensus 11 ~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p-~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAP-EGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCC-CSSCCCTTGGG
T ss_pred CCCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCC-CCceECccccc
Confidence 445999995 479999999999999999999999999 89999999983
No 117
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.20 E-value=2.7e-12 Score=117.82 Aligned_cols=75 Identities=28% Similarity=0.615 Sum_probs=63.9
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc-----cCCCCccHHHHHHHHHhC
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS-----CLETHSNDALQSILSTLF 757 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~-----~~~~~vN~~L~~lIe~lf 757 (764)
..+.+++.|+||++++.+|++++|||+||..||..|+...... ||.||..+... ..++.+|..|.++|..+|
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLC---CPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSB---CTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCC---CCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456789999999999999999999999999999999775555 99999998641 016789999999999999
Q ss_pred CCC
Q psy11302 758 PGY 760 (764)
Q Consensus 758 Pg~ 760 (764)
|.+
T Consensus 87 p~~ 89 (115)
T 3l11_A 87 PRE 89 (115)
T ss_dssp HHH
T ss_pred CHH
Confidence 764
No 118
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=6e-12 Score=119.54 Aligned_cols=68 Identities=28% Similarity=0.746 Sum_probs=53.7
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..+.+++++.|+||++.+.+|++++|||+||..||..|+.... . ||.||..+... ..|..+..+|..+
T Consensus 46 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~----~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 46 MNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-E---CPICRKDIKSK----TYSLVLDNCINKM 113 (138)
T ss_dssp HHHHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-B---CTTTCCBCCCE----EECHHHHHHHHHH
T ss_pred HHHhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-c---CCCCCCcCCCC----CCccchhHHHHHH
Confidence 3445678899999999999999999999999999999998654 3 99999998753 2344444444444
No 119
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.17 E-value=2e-11 Score=106.70 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=63.5
Q ss_pred CEEEEEeCCCCEEEEE-EcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC--CeeCC---CCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVL-VLSKRTLISDMKTQIENTLDVPVDKQRLFYK--GKQLE---DEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~-v~~~~~TV~~LK~~I~~~~gip~~~QrLif~--GK~L~---D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+||+.+|+. .+. +.+ ++||.+||++|++..|+|+++|+|+|+ +|+|. |+.+|++|||.+|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~-~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSS-RTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCT-TCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCC-CCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 887 999999999999999999999999997 48884 78899999999999999874
No 120
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=1.1e-11 Score=120.86 Aligned_cols=74 Identities=24% Similarity=0.759 Sum_probs=62.2
Q ss_pred HhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCCC
Q psy11302 683 EHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPGY 760 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg~ 760 (764)
..+.+.+.|+||++.+.+|+++ +|||+||..||..|+...... ||.||..+.... .+.+|..|.++|..++|+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~~-~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE---CPTCRKKLVSKR-SLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCB---CTTTCCBCCSGG-GEEECHHHHHHHHHHC---
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCC---CCCCCCcCCCcc-cCCcCHHHHHHHHHHHcch
Confidence 3466789999999999999997 999999999999999975555 999999996432 6889999999999999874
No 121
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.2e-11 Score=114.02 Aligned_cols=69 Identities=23% Similarity=0.641 Sum_probs=60.8
Q ss_pred HHHHhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 680 EVLEHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
.+.+.+.+.+.|+||++++.+|+++ +|||+||..||..|+. .. ||.||..+... .+.+|..|.++++.+
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~---CP~Cr~~~~~~--~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TG---CPVCYTPAWIQ--DLKINRQLDSMIQLC 83 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TB---CSSSCCBCSCS--SCCCCHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CC---CcCCCCcCccc--cccccHHHHHHHHHH
Confidence 4556778999999999999999999 9999999999999987 34 99999999765 689999999998754
No 122
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=1.1e-10 Score=103.41 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+|++.+|+.+.+.|.+ ++++..|++.++++.|++++++||+|.|+.|.++.|+++|++++||+|++++++.++
T Consensus 6 i~ikVk~~~g~~v~~~vk~-~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEET-TSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECC-CChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999997 999999999999999999999999999999999999999999999999999976553
No 123
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=108.93 Aligned_cols=69 Identities=26% Similarity=0.487 Sum_probs=59.9
Q ss_pred hhcccccccccccccCceecC-CCCcchHhHHHHHHhhc-----CCCcCCCcc--cccc-cccccCCCCccHHHHHHHHH
Q psy11302 685 IQEKFLCIICQELVYKPITLD-CVHTFCHDCLKRAFKIE-----SDACNSCPY--CRKE-MNKSCLETHSNDALQSILST 755 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~-CgH~FC~~CL~~~~~~~-----~~~~~~CP~--CR~~-i~~~~~~~~vN~~L~~lIe~ 755 (764)
..+.|.||||+++|.+||+++ |||+||+.||..|+... ... ||. |+.. +... ++.+|..|.++|+.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~---CP~tgc~~~~l~~~--~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAY---CPQIGCSHTDIRKS--DLIQDEALRRAIEN 78 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBC---CCSTTCCCCCBCGG--GEEECHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCC---CCcCcCcccccCHh--hCcCCHHHHHHHHH
Confidence 467899999999999999996 99999999999999864 234 999 9877 7665 68999999999998
Q ss_pred hCC
Q psy11302 756 LFP 758 (764)
Q Consensus 756 lfP 758 (764)
+.-
T Consensus 79 ~~~ 81 (94)
T 2yu4_A 79 HNK 81 (94)
T ss_dssp HHT
T ss_pred HHH
Confidence 854
No 124
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.15 E-value=1e-10 Score=99.12 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+|++.+|+.+.+.|.+ ++++..|++..+++.|++++++||+|.|+.|.++.|.+++++++||+|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~-~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECT-TSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECC-CChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 6899999999999999997 9999999999999999999999999999999999999999999999999873
No 125
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=6.2e-11 Score=105.62 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=62.3
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC---ee----CCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG---KQ----LEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G---K~----L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
+.|+|+..... .+.+++.+ ++||.+||++|+..+|+|+++|||+|.| +. |+|+.+|++|+|++|++|||+-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~-~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSR-SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECT-TSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCc-cCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 35778776443 68999997 9999999999999999999999999987 53 5899999999999999999985
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=2.7e-11 Score=126.44 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=63.0
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCCC
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFPG 759 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfPg 759 (764)
+...|.|+||+++|.+||+++|||+||+.||.+|+...... ||.||.++... ++.+|..|.++|+.|...
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~---cP~~~~~~~~~--~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHF---NPVTRSPLTQE--QLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSS---CTTTCCCCCGG--GCEECHHHHHHHHHHHTT
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCC---CcCCCCCCchh--cCcccHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999876555 99999999876 799999999999998753
No 127
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.12 E-value=9.8e-12 Score=103.58 Aligned_cols=50 Identities=30% Similarity=1.001 Sum_probs=43.9
Q ss_pred CCccCccCCCCC--CCCCcEEEecCCCcccccccCCCCCC--C-CCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLES--V-PEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~--~-P~~g~W~C~~C~ 365 (764)
.+..|.+|+... +.+.||+||.|+++||++||.|||.+ + | +++|||+.|.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p-~~~W~C~~C~ 59 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDS-DEKWLCRQCV 59 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHS-SCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCC-CCCEECCCCc
Confidence 445699999873 45899999999999999999999987 4 7 8999999998
No 128
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.11 E-value=5e-11 Score=118.15 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=62.3
Q ss_pred hhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 684 HIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
.+.+.|.||||+++|.+||+++|||+||+.||..|+.....+ ||.|+.++... ++.+|..|.++|+.+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~t---cP~t~~~l~~~--~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHF---DPVTRSPLTQD--QLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSB---CTTTCCBCCGG--GCEECHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCC---CCCCcCCCChh--hCcchHHHHHHHHHHH
Confidence 467889999999999999999999999999999999875445 99999999876 7999999999999874
No 129
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-12 Score=111.94 Aligned_cols=69 Identities=32% Similarity=0.668 Sum_probs=54.8
Q ss_pred HHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcC---CCcCCCcccccccccccCCCCccHHHHHH
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIES---DACNSCPYCRKEMNKSCLETHSNDALQSI 752 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~---~~~~~CP~CR~~i~~~~~~~~vN~~L~~l 752 (764)
.+.+.+.+.|+||++.+.+|++++|||+||..|+..|+.... .....||.||..+... .+..|..|.++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~--~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE--HLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS--GGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh--hCCcCHHHHHh
Confidence 445778999999999999999999999999999999998631 0013399999999865 56777665544
No 130
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2.2e-11 Score=110.77 Aligned_cols=72 Identities=24% Similarity=0.680 Sum_probs=55.8
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHH
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILST 755 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~ 755 (764)
..+.+.+.+.|+||++.+.+|++++|||+||..|+..|+..... ...||.||..+... .+..|..+.++++.
T Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 14 VINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR--SLQESTRFSQLVEE 85 (112)
T ss_dssp HHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT--TCBCCCSSSHHHHH
T ss_pred HHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh--hcCccHHHHHHHHH
Confidence 44556788999999999999999999999999999999986531 12399999999875 45555444444443
No 131
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=2.9e-11 Score=111.73 Aligned_cols=71 Identities=17% Similarity=0.461 Sum_probs=61.5
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+.+.+.+.+.|+||++++.+|++++|||+||..||..|+...... ||.||..+... .+..|..+.++|..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~--~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK---CPVDNEILLEN--QLFPDNFAKREILSL 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSB---CTTTCCBCCGG--GCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCC---CCCCCCCcCHH--hcccCHHHHHHHccc
Confidence 445678899999999999999999999999999999999987655 99999999876 577888888887754
No 132
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-11 Score=105.03 Aligned_cols=49 Identities=29% Similarity=0.856 Sum_probs=43.0
Q ss_pred CCccCccCCCCC--CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 315 KDCGCSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 315 ~~c~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.+..|.+|+..+ +++.||+||.|+++||++|+.||+ +| +|+|||+.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP-~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IP-EGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CC-SSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CC-CCCcCCccCcC
Confidence 445699999775 678999999999999999999984 89 89999999983
No 133
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=7.7e-12 Score=107.64 Aligned_cols=65 Identities=32% Similarity=0.745 Sum_probs=54.3
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhc-----CCCcCCCcccccccccccCCCCccHHHHHH
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIE-----SDACNSCPYCRKEMNKSCLETHSNDALQSI 752 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~-----~~~~~~CP~CR~~i~~~~~~~~vN~~L~~l 752 (764)
+.+.+.+.|+||++.+.+|++++|||+||..|+..|+... ... ||.||..+... .+..|..|.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~---CP~Cr~~~~~~--~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGN---CPVCRVPYPFG--NLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBC---CTTTCCCCCTT--CCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCC---CCCCCCcCCHH--hCCcCHHHHHh
Confidence 4467789999999999999999999999999999999873 344 99999999875 56777665544
No 134
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.09 E-value=2.5e-10 Score=101.61 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+|++.+|+.+.+.|.+ ++++..|+..++++.|++++++||+|.|+.|.++.|+++|++++||+|++++++.
T Consensus 18 i~ikV~~~~g~~i~~~v~~-~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEET-TSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEcc-CCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 6799999999999999997 9999999999999999999999999999999999999999999999999999764
No 135
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.7e-11 Score=102.78 Aligned_cols=67 Identities=24% Similarity=0.553 Sum_probs=55.5
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhCC
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLFP 758 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lfP 758 (764)
..+.+.|+||++.+.+|++++|||+||..||..|+.... . ||.||..+.. .+..|..|...+....|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~---CP~Cr~~~~~---~~~~~~~l~~~~~~~~~ 78 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP-R---CYICDQPTGG---IFNPAKELMAKLQKSGP 78 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS-B---CSSSCCBCCS---CCEECHHHHHHHSSSCS
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC-c---CCCcCccccc---cCCcHHHHHHHHHhhCc
Confidence 456889999999999999999999999999999998643 3 9999999974 57788776666554443
No 136
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.08 E-value=2.1e-10 Score=107.02 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC---e---e-CCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG---K---Q-LEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G---K---~-L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+|+...+. .+.+.+.+ ++||++||++|+..+|+|+++|||+|.| + + ++|+.+|++|+|++|++|||+.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~-~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPA-GMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEET-TSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCC-CCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 36778776443 68899997 9999999999999999999999999987 4 3 4899999999999999999986
No 137
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.06 E-value=4.2e-10 Score=97.10 Aligned_cols=70 Identities=11% Similarity=0.275 Sum_probs=67.4
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
|+|+|++.+|+ .+.+.|.+ ++++..|++.++++.|+++++|||+|.|+.|.++.|++++++++||+|+++
T Consensus 8 i~ikV~~~~g~~~i~~~i~~-~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSP-DSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECT-TSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECC-CChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999996 89999997 999999999999999999999999999999999999999999999999986
No 138
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=2.4e-10 Score=103.82 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+|++.+|+.+.|.|.+ ++++..|+..++++.|++++++||+|.|+.|.++.|+.+|++++||+|++++++.++
T Consensus 25 I~IkVk~~~g~~i~~kVk~-~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECT-TSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcC-CChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999997 999999999999999999999999999999999999999999999999999876554
No 139
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-11 Score=106.21 Aligned_cols=65 Identities=34% Similarity=0.798 Sum_probs=54.0
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhc-----CCCcCCCcccccccccccCCCCccHHHHHH
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIE-----SDACNSCPYCRKEMNKSCLETHSNDALQSI 752 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~-----~~~~~~CP~CR~~i~~~~~~~~vN~~L~~l 752 (764)
+.+.+.+.|+||++.+.+|++++|||+||..|+..|+... ... ||.||..+... .+..|..|.++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~---CP~Cr~~~~~~--~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESS---CPVCRISYQPE--NIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCC---CTTTCCSSCSS--SCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCc---CCCCCCccCHH--hcCccHHHHHh
Confidence 4467889999999999999999999999999999999872 334 99999999875 56777655443
No 140
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.03 E-value=1.1e-10 Score=118.37 Aligned_cols=51 Identities=29% Similarity=0.853 Sum_probs=44.9
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.+..|.+|+ +++.+|+||.|+++||++||.|||..+| .|+|+|+.|.....
T Consensus 6 ~~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTC---CCEEEEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSSS
T ss_pred CCCCCCCCC---CCCceEEcCCCCCccCCccCCCCCCCCC-CCCEEeCceeCccc
Confidence 445699999 4567999999999999999999999999 99999999996543
No 141
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=98.42 Aligned_cols=53 Identities=30% Similarity=0.844 Sum_probs=46.9
Q ss_pred HhhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 683 EHIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+.+++.+.|+||++.+.+|+++ +|||+||..||..|+.... . ||.||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 63 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-R---CPKCNIVVHQT 63 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS-S---CTTTCCCCCSS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC-c---CCCcCcccCcc
Confidence 4467889999999999999997 9999999999999998743 3 99999999865
No 142
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=7.2e-11 Score=97.61 Aligned_cols=55 Identities=24% Similarity=0.715 Sum_probs=47.8
Q ss_pred HHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.+.+.|+||++.+.+|++++|||.||..||..|+...... ||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~ 63 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPK---CTACQESIVKD 63 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCC---CTTTCCCCCTT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCC---CCCCCcCCChh
Confidence 44567889999999999999999999999999999999754444 99999998764
No 143
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=2e-10 Score=105.57 Aligned_cols=70 Identities=27% Similarity=0.642 Sum_probs=57.9
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
..+.+.+.|+||++++.+|++++|||+||..||.+|+...... ||.||..+.... -...+..+.+++..+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~~-~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY---CPSCRYPCFPTD-LESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSB---CTTTCCBCCGGG-CBCCCHHHHHHHHHC
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCc---CCCCCCCCCHhh-ccccHHHHHHHHHHh
Confidence 4466789999999999999999999999999999999875555 999999998652 234577777777654
No 144
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.02 E-value=1.3e-10 Score=115.70 Aligned_cols=50 Identities=30% Similarity=0.907 Sum_probs=44.2
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
++..|.+|+ +++.+|+||.|+++||++||.|||..+| .|+|+|+.|+...
T Consensus 3 ~~~~C~~C~---~~g~ll~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTC---CCSSCEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSS
T ss_pred CCCccccCC---CCCeeeecCCCCcccCccccCCCCCCCC-CCCEECccccCcc
Confidence 345699999 4577999999999999999999999999 9999999998543
No 145
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.00 E-value=2.2e-10 Score=123.46 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=64.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE---ECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF---YKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi---f~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+||. .|+++.|++.+ ++||.+||++|++.+||||++|||| |+|++|+|+.+|++|+|++|++|+||.
T Consensus 6 i~i~Vk~-~g~~~~v~v~~-~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTD-QDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-TTEEEEEEEET-TSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECC-CCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 5788996 69999999998 9999999999999999999999999 999999999999999999999999985
No 146
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.00 E-value=7.3e-10 Score=100.88 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
|+|+|++ +|+.+.|.|.+ ++++..|+..++++.|++++++||+|.|+.|.++.|.+++++++||+|++++++.
T Consensus 32 I~IkV~~-~g~~i~fkIk~-tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCC-CCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 6899999 99999999997 9999999999999999999999999999999999999999999999999998764
No 147
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.00 E-value=5.2e-11 Score=104.99 Aligned_cols=49 Identities=29% Similarity=0.856 Sum_probs=42.7
Q ss_pred CCccCccCCCCC--CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 315 KDCGCSICAGKT--SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 315 ~~c~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.+..|.+|+..+ +.+.||+||.|+.+||++|+.||+ +| .|+|||+.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP-~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IP-EGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CC-SSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cC-CCceECccccC
Confidence 345699999765 566999999999999999999985 89 89999999984
No 148
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.99 E-value=1.9e-10 Score=97.49 Aligned_cols=53 Identities=23% Similarity=0.837 Sum_probs=46.1
Q ss_pred HhhhcccccccccccccCceecC-CCCcchHhHHHHHHhhcC-CCcCCCccccccccc
Q psy11302 683 EHIQEKFLCIICQELVYKPITLD-CVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNK 738 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~-CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~ 738 (764)
+.+.+.+.|+||++++.+|++++ |||+||..||..|+.... .. ||.||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~---CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT---CPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSC---CSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCc---CCCCCCcCCC
Confidence 44678899999999999999999 999999999999998653 34 9999997654
No 149
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.98 E-value=4e-10 Score=103.24 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+|++.+|+.+.|.|.+ ++++..|++.++++.|+++++|||+|.|+.|.++.|+++|++++||+|++++.+.++
T Consensus 27 I~IkVk~~~g~~i~fkVk~-~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKS-RTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp EEEEEEETTSCCEEEEECT-TSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECC-CChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 6899999999999999997 999999999999999999999999999999999999999999999999999876554
No 150
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.97 E-value=2.5e-10 Score=114.27 Aligned_cols=48 Identities=33% Similarity=0.965 Sum_probs=43.1
Q ss_pred CccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
+..|.+|+ +++.+|+||.|+++||++||.|||..+| .|+|+|+.|...
T Consensus 2 ~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTC---CCSSCCCCTTTCCBCCSTTSTTCCSSCC-CTTCCTTTTSCS
T ss_pred CCcCccCC---CCCceeECCCCCchhccccCCCCcccCC-CCCCCCcCccCC
Confidence 34599999 4467999999999999999999999999 999999999844
No 151
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=95.74 Aligned_cols=54 Identities=33% Similarity=0.866 Sum_probs=46.6
Q ss_pred HhhhcccccccccccccCceecCCCCcchHhHHHHHHhh--cCCCcCCCcccccccccc
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKI--ESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~--~~~~~~~CP~CR~~i~~~ 739 (764)
+.+.+.+.|+||++.+.+|++++|||.||..||..|+.. .... ||.||..+...
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~---CP~Cr~~~~~~ 70 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFK---CPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCC---CSSSCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCC---CCCCCCcCCcc
Confidence 446788999999999999999999999999999999973 2334 99999998764
No 152
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.94 E-value=2e-10 Score=109.79 Aligned_cols=72 Identities=19% Similarity=0.508 Sum_probs=55.6
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccccc-------CCCCccHHHHHHH
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSC-------LETHSNDALQSIL 753 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~-------~~~~vN~~L~~lI 753 (764)
+.+.+++.+.|+||++++.+|++++|||+||..||..|+...... ||.||..+.... ..+-.+..+...|
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~---CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i 100 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQN---CAACVHEGIYEEGISILESSSAFPDNAARREV 100 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEE---CHHHHHTTCCCTTTTEECGGGCEECHHHHHHH
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCC---CCCCCCcccccccccccchhhhcccHHHHHHH
Confidence 345678999999999999999999999999999999999876655 999999753210 0233556666666
Q ss_pred HH
Q psy11302 754 ST 755 (764)
Q Consensus 754 e~ 755 (764)
..
T Consensus 101 ~~ 102 (141)
T 3knv_A 101 ES 102 (141)
T ss_dssp HT
T ss_pred cc
Confidence 54
No 153
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=111.07 Aligned_cols=71 Identities=17% Similarity=0.461 Sum_probs=60.6
Q ss_pred HHHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+.+.+.+.+.|+||++++.+|++++|||+||..||.+|+...... ||.||..+... .+..+..+..+|..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~--~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK---CPVDNEILLEN--QLFPDNFAKREILSL 81 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSB---CTTTCCBCCGG--GCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCC---CCCCccCcchh--hhhhhHHHHHHHhhc
Confidence 455678899999999999999999999999999999999876655 99999999876 566777777777653
No 154
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.8e-10 Score=92.28 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=41.7
Q ss_pred HHhhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
.+.+++.+.|+||++.+.+|++++|||+||..||.+|+..... ...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCG-FFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSS-CCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCC-CCcCcCC
Confidence 3456789999999999999999999999999999999985221 1239988
No 155
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=5.8e-10 Score=91.85 Aligned_cols=50 Identities=28% Similarity=0.634 Sum_probs=43.6
Q ss_pred cccccccccc-cccCc----eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQE-LVYKP----ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e-~l~~P----vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+++.|+||++ .+.+| +.++|||+||..|+.+|+...... ||.||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~---CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGN---CPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSS---CTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCc---CCCCCCccccc
Confidence 4688999999 99999 468999999999999998765555 99999999865
No 156
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.88 E-value=6.8e-10 Score=92.53 Aligned_cols=51 Identities=31% Similarity=0.780 Sum_probs=45.6
Q ss_pred hhcccccccccccccCc-------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKP-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.+.|+||++.+.+| +.++|||.||..||.+|+.... . ||.||..+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-T---CPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-B---CTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-C---CCCCCCccChh
Confidence 46789999999999998 8899999999999999998764 3 99999999865
No 157
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.3e-10 Score=93.34 Aligned_cols=51 Identities=31% Similarity=0.692 Sum_probs=45.0
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.+.|+||++.+.+|++++|||.||..||..|+.... . ||.||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-R---CALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS-B---CSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC-c---CcCcCchhCHh
Confidence 356789999999999999999999999999999998653 3 99999998753
No 158
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.85 E-value=6.6e-10 Score=94.83 Aligned_cols=48 Identities=27% Similarity=0.774 Sum_probs=44.0
Q ss_pred ccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
..|.+|++..+++.||+||.|+.+||++|+.+++..+| .++|+|+.|.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~-~~~w~C~~C~ 66 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPE-EMQWFCPKCA 66 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCS-SSCCCCTTTH
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCC-CCCEEChhcc
Confidence 34999998887778999999999999999999999888 7999999998
No 159
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.2e-09 Score=94.80 Aligned_cols=54 Identities=31% Similarity=0.747 Sum_probs=46.9
Q ss_pred HhhhcccccccccccccC----ceecCCCCcchHhHHHHHHhhc--CCCcCCCcccccccccc
Q psy11302 683 EHIQEKFLCIICQELVYK----PITLDCVHTFCHDCLKRAFKIE--SDACNSCPYCRKEMNKS 739 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~----Pvtt~CgH~FC~~CL~~~~~~~--~~~~~~CP~CR~~i~~~ 739 (764)
+.+.+.+.|+||++.+.. |+.++|||.||..|+..|+... ... ||.||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~---CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVR---CPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBC---CTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcC---CCCCCCcccch
Confidence 346788999999999998 9999999999999999999875 234 99999988653
No 160
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=8.2e-10 Score=91.30 Aligned_cols=52 Identities=31% Similarity=0.750 Sum_probs=45.1
Q ss_pred HhhhcccccccccccccCc-------eecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 683 EHIQEKFLCIICQELVYKP-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
..+.+.+.|+||++.+.+| +.++|||.||..||..|+.... . ||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-T---CPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-S---CTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-C---CCCCCCccCc
Confidence 3456789999999999988 8899999999999999998754 3 9999998764
No 161
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=86.56 Aligned_cols=48 Identities=33% Similarity=0.890 Sum_probs=41.1
Q ss_pred HHhhhcccccccccccccCceecCCCCcchHhHHHHHHhh--cCCCcCCCccc
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKI--ESDACNSCPYC 732 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~--~~~~~~~CP~C 732 (764)
.+.+.+.+.|+||++.+.+|++++|||+||..||.+|+.. .... ||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP---CPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCC---CSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCC---CCCC
Confidence 3456788999999999999999999999999999999765 3334 9988
No 162
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.79 E-value=1.7e-09 Score=88.05 Aligned_cols=49 Identities=33% Similarity=0.823 Sum_probs=43.3
Q ss_pred cccccccccccccCc-------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYKP-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+.+.|+||++.+.+| +.++|||.||..|+.+|+.... . ||.||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-T---CPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-B---CTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-C---CCCCCccCCcc
Confidence 468899999999987 7899999999999999998754 3 99999998764
No 163
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.3e-09 Score=111.41 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=58.9
Q ss_pred hhhcccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcc--cccccccccCCCCccHHHHHHHHHh
Q psy11302 684 HIQEKFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPY--CRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~--CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
.....+.||||+++|.+||++ .|||+||+.||..|+..... ..||. |+..+... ++.+|..|.++++.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~--~~CPvtGCr~~l~~~--dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTT--RDCPQAACSQVVSMR--DFVRDPIMELRCKIA 248 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSC--EECSGGGCSCEECGG--GEEECHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCC--CCCCcccccCcCchh--hCCcCHHHHHHHHHH
Confidence 456789999999999999985 99999999999999986421 23999 99999876 799999999888753
No 164
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=96.52 Aligned_cols=47 Identities=28% Similarity=0.799 Sum_probs=41.5
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
| +|+...+.+.||+||.|+++||+.|+.|++..+| + .|+|+.|....
T Consensus 31 C-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 31 C-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-D-TYLCERCQPRN 77 (98)
T ss_dssp C-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-S-SBCCTTTSSSC
T ss_pred e-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-C-CEECCCCcCCC
Confidence 6 6777778899999999999999999999999999 3 89999998543
No 165
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.74 E-value=2.2e-08 Score=89.34 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=61.2
Q ss_pred EEEEEe---CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC------ee-C-CCCcCccccCcCCCCEEEE
Q psy11302 2 YVKIRS---LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG------KQ-L-EDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKt---l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G------K~-L-~D~~tL~dy~I~~g~tI~L 70 (764)
.|+|+. .+|+.+.+.+.+ +.||.+||.+|+..+|+|+..|||+|.+ .. | +|..+|++|+|.+|++|||
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~-~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPD-SMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEET-TSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEecCCCCCcEEEEECCC-CCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 566765 467888899886 9999999999999999999999999973 22 5 6788999999999999999
Q ss_pred EEe
Q psy11302 71 MIK 73 (764)
Q Consensus 71 vvr 73 (764)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 863
No 166
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=3.4e-09 Score=90.18 Aligned_cols=52 Identities=27% Similarity=0.621 Sum_probs=44.1
Q ss_pred hhhcccccccccccccCc---eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 684 HIQEKFLCIICQELVYKP---ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~P---vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.+.|+||++.+..+ +.++|+|.||..||.+|+.... . ||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-S---CPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-S---CTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-c---CcCcCCccCCc
Confidence 356788999999999866 4569999999999999998654 3 99999999865
No 167
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.69 E-value=5.2e-09 Score=82.91 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=41.9
Q ss_pred hhcccccccccccccC---ceecC-CCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 685 IQEKFLCIICQELVYK---PITLD-CVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~---Pvtt~-CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
+++...|+||++.+.. ++.++ |+|.||..||.+|++... . ||.||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~---CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-T---CPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-S---CSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-c---CcCCCCEeE
Confidence 4577899999999987 77787 999999999999998754 3 999998764
No 168
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.69 E-value=7.4e-09 Score=81.95 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=41.0
Q ss_pred cccccccccccccC----ceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 687 EKFLCIICQELVYK----PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 687 e~~~C~IC~e~l~~----Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
....|+||++.+.+ ++.++|+|.||..||.+|+.... . ||.||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-R---CPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-C---CTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-c---CCCCCCcCC
Confidence 46789999999866 77899999999999999999873 4 999998764
No 169
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=6.8e-09 Score=89.34 Aligned_cols=53 Identities=25% Similarity=0.490 Sum_probs=43.1
Q ss_pred hhhccccccccccccc--CceecC--CCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 684 HIQEKFLCIICQELVY--KPITLD--CVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~--~Pvtt~--CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+++++.|+||++.+. +++.++ |||+||..|+..++...... ||.||+.+...
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~---CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL---CPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSB---CTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCC---CCCCCCccCCC
Confidence 4678899999999774 345554 99999999999988655555 99999998765
No 170
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.67 E-value=8.1e-09 Score=85.42 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=42.7
Q ss_pred hcccccccccccccCc-eecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKP-ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P-vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.....|+||++.+.+| +.++|||.||..|+.+|+.... . ||.||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-T---CPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-S---TTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-c---CcCCChhhHh
Confidence 3567899999999997 7789999999999999998764 3 9999999865
No 171
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=3.2e-09 Score=85.22 Aligned_cols=47 Identities=30% Similarity=0.660 Sum_probs=40.4
Q ss_pred hcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.|+||++.+.+|++++|||+||..|+.. .... ||.||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~---CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQ---CPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSS---CSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCC---CCcCCcEeecC
Confidence 46789999999999999999999999999876 2233 99999988754
No 172
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=6.3e-09 Score=88.32 Aligned_cols=52 Identities=31% Similarity=0.668 Sum_probs=44.8
Q ss_pred HHHHhhhcccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 680 EVLEHIQEKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 680 ~~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
...+.+++.+.|+||++.+.+|++++|||. ||..|+..| .. ||.||..+...
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~---CP~Cr~~i~~~ 68 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DK---CPMCYTVITFK 68 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SB---CTTTCCBCSEE
T ss_pred HHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----cc---CCCcCcCccCc
Confidence 344567788999999999999999999999 999999877 33 99999998764
No 173
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.64 E-value=1.2e-08 Score=84.61 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=43.1
Q ss_pred hhccccccccccccc---CceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVY---KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~---~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
......|+||++.+. .++.++|+|.||..||..|+..... ||.||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~----CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK----CPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSB----CTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCC----CcCcCccccCc
Confidence 456789999999885 4577899999999999999987653 99999998764
No 174
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.2e-09 Score=88.50 Aligned_cols=51 Identities=27% Similarity=0.742 Sum_probs=44.2
Q ss_pred hhhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 684 HIQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.+.|+||++.+.+ +.++|||.||..|+.+|+... .. ||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~-~~---CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRH-RN---CPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCC-SS---CHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCc-Cc---CCCcCCcccCC
Confidence 45678999999999999 999999999999999999843 33 99999998754
No 175
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=86.48 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=42.8
Q ss_pred hcccccccccccccCc---eecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKP---ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P---vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.+...|+||++.+..+ +.++|+|.||..||.+|++... . ||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~---CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-T---CPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-S---CTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-c---CcCcCCcCCC
Confidence 4677899999999887 6789999999999999998764 3 9999998865
No 176
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.62 E-value=1.6e-08 Score=92.13 Aligned_cols=47 Identities=32% Similarity=0.849 Sum_probs=41.5
Q ss_pred CCccCccCCCCCCCCCcEEEe--cCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCE--ECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
++..|.+|+ +.++||+|| .|+++||++||. |..+| +|+||||.|.+.
T Consensus 14 ~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P-~g~W~Cp~c~C~ 62 (107)
T 4gne_A 14 HEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPP-YGKWECPWHQCD 62 (107)
T ss_dssp SCSSCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCC-SSCCCCGGGBCT
T ss_pred CCCCCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCC-CCCEECCCCCCC
Confidence 445599998 568899999 899999999998 99999 999999999753
No 177
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=89.74 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=43.1
Q ss_pred hhcccccccccccccC---ceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 685 IQEKFLCIICQELVYK---PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~---Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
..+...|+||++.+.. ++.++|+|.||..||..|+.... . ||.||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~---CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-T---CPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-B---CTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-c---CcCcCccCCC
Confidence 3567899999999887 78899999999999999998654 3 9999998764
No 178
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=85.47 Aligned_cols=51 Identities=25% Similarity=0.606 Sum_probs=43.6
Q ss_pred hhhcccccccccccccCceec---CCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 684 HIQEKFLCIICQELVYKPITL---DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 684 ~l~e~~~C~IC~e~l~~Pvtt---~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.+.....|+||++.+..+..+ +|+|.||..||.+|++... . ||.||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~---CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-V---CPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-B---CTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-c---CCCcCccccc
Confidence 356678999999999877554 9999999999999998765 3 9999999875
No 179
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.61 E-value=1.4e-07 Score=86.83 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|+|+|++.+|..+.|.|.. ++++..|+...+++.|+++.++||+|.|+.|.++.|..++++++||+|++++.+
T Consensus 41 I~LKV~~qdg~ev~fkIk~-tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKM-TTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEET-TSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcc-CChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 4789999999999999997 999999999999999999999999999999999999999999999999999854
No 180
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.57 E-value=1.6e-08 Score=93.73 Aligned_cols=50 Identities=32% Similarity=0.812 Sum_probs=44.9
Q ss_pred hcccccccccccccCc-------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKP-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.|+||++.+.+| ++++|||+||..||.+|+.... . ||.||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-T---CPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-B---CTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-C---CCCCCCcCccc
Confidence 4689999999999999 8999999999999999998765 3 99999998764
No 181
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.55 E-value=3.2e-08 Score=90.23 Aligned_cols=53 Identities=26% Similarity=0.504 Sum_probs=41.2
Q ss_pred cccccccccccccCce------------------ecCCCCcchHhHHHHHHhhcC-CCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVYKPI------------------TLDCVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pv------------------tt~CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~~ 739 (764)
.+..|+||++.|..|. .++|+|.||..||..|+.... .....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997765 679999999999999996421 0112399999998754
No 182
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.6e-08 Score=84.62 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=42.3
Q ss_pred HHhhhcccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 682 LEHIQEKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 682 ~~~l~e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+++.+.|+||++.+.+|+.++|||. ||..|+... .. ||.||..+...
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~---CP~Cr~~i~~~ 69 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DK---CPMCYTVITFK 69 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SB---CTTTCCBCCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CC---CccCCceecCc
Confidence 4455678899999999999999999999 999999642 33 99999998764
No 183
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.49 E-value=7.9e-08 Score=87.96 Aligned_cols=50 Identities=26% Similarity=0.741 Sum_probs=44.9
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
++..|.+|+..++.++||+|+.|+++||++||.|++..+| .+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~-~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLK-RAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTT-STTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccccc-ccCccCCcCC
Confidence 4556999998877778899999999999999999998888 8999999996
No 184
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.42 E-value=1.1e-07 Score=104.43 Aligned_cols=52 Identities=31% Similarity=0.588 Sum_probs=45.5
Q ss_pred hhcccccccccccccCceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
......|+||++.+.+|+.++|||.||..|+..|+...... ||.||..+...
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~---CP~CR~~i~~~ 380 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG---CPFCRCEIKGT 380 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSB---CTTTCCBCCEE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCC---CCCCCCccCCc
Confidence 45568999999999999999999999999999999854445 99999998764
No 185
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.42 E-value=1.5e-07 Score=79.56 Aligned_cols=43 Identities=33% Similarity=1.116 Sum_probs=37.4
Q ss_pred CccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ +.||.||. |+ .+||+.|+. |..+| .+.||||.|..
T Consensus 19 C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~ 64 (71)
T 1wen_A 19 C-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 64 (71)
T ss_dssp S-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCC-SSCCCCTTTSS
T ss_pred E-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCC-CCCEECCCCCc
Confidence 7 6887654 68999999 77 699999999 88999 89999999983
No 186
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.40 E-value=4.7e-08 Score=93.15 Aligned_cols=50 Identities=26% Similarity=0.721 Sum_probs=43.5
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCCC-----C--CCCCCCCCCccCcCCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLE-----S--VPEDDEWFCPSCKRDT 368 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~-----~--~P~~g~W~C~~C~~~~ 368 (764)
.++.|.+|+ +++++|+||.|+++||+.||.|||. + .| .++|+|+.|...+
T Consensus 62 ~~d~C~vC~---~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p-~~~W~C~~C~~~p 118 (142)
T 2lbm_A 62 MDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE-NNQWYCYICHPEP 118 (142)
T ss_dssp CBCSCSSSC---CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS-TTCCCCTTTCCCT
T ss_pred CCCeecccC---CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccC-CCCCEeecccCcc
Confidence 456699999 6789999999999999999999986 2 47 8999999998543
No 187
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.39 E-value=5.9e-08 Score=85.62 Aligned_cols=42 Identities=26% Similarity=0.975 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCcEEEecCC---CcccccccCCCCCCCCCCCCCCCcc-Cc
Q psy11302 319 CSICAGKTSPDKLIVCEECQ---HYYHIWCLKPPLESVPEDDEWFCPS-CK 365 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~---~~~H~~Cl~PpL~~~P~~g~W~C~~-C~ 365 (764)
| +|++..+ +.||.||.|+ .+||+.|+. |...| .+.||||. |.
T Consensus 29 C-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p-~~~W~Cp~cC~ 74 (90)
T 2jmi_A 29 C-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAP-KGKWYCSKDCK 74 (90)
T ss_dssp S-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCT-TSCCCSSHHHH
T ss_pred E-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCC-CCCccCChhhc
Confidence 6 7887644 5799999977 899999998 88899 89999999 97
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=7.8e-07 Score=89.46 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
++|+|+ .+|+...+.+.+ ++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+||+|++++.+.++
T Consensus 30 I~LkV~-~~g~~v~fkIk~-~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp EEEEEE-CSSCEEEEEECT-TSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EEEEEe-cCCCEEEEEEec-CCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 478897 489999999997 999999999999999999999999999999999999999999999999999987554
No 189
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.37 E-value=6.5e-08 Score=83.30 Aligned_cols=51 Identities=29% Similarity=0.724 Sum_probs=43.4
Q ss_pred HHHhhhcccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.+++...|+||++.+.+|+.++|||. ||..|+..+. . ||.||..+...
T Consensus 11 ~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~---CP~Cr~~i~~~ 62 (79)
T 2yho_A 11 KLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----S---CPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----B---CTTTCCBCCEE
T ss_pred HHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----c---CCCCCchhhCe
Confidence 34556778899999999999999999999 9999988652 3 99999998764
No 190
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.36 E-value=6.5e-08 Score=79.13 Aligned_cols=43 Identities=33% Similarity=1.116 Sum_probs=37.2
Q ss_pred CccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ +.||.||. |+ .+||+.|+. |..+| .|.||||.|..
T Consensus 13 C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 13 C-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp T-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred E-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCC-CCCEECcCccC
Confidence 6 7887654 68999999 55 799999999 88999 89999999973
No 191
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.32 E-value=1e-07 Score=77.75 Aligned_cols=43 Identities=33% Similarity=1.118 Sum_probs=37.2
Q ss_pred CccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ +.||.||. |+ .+||+.|+. |...| .++||||.|..
T Consensus 12 C-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 12 C-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp T-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred E-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCC-CCCEECcCccC
Confidence 6 7887644 68999999 77 699999999 88999 89999999973
No 192
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.5e-07 Score=79.73 Aligned_cols=48 Identities=27% Similarity=0.620 Sum_probs=39.5
Q ss_pred cccccccccccccC--------------ceec-CCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 687 EKFLCIICQELVYK--------------PITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~--------------Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
++..|+||++.+.. ++.+ +|+|.|+..||.+|+..+. + ||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~---CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-R---CPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-B---CTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-C---CCCcCCCcch
Confidence 45679999998876 4455 5999999999999998765 4 9999998764
No 193
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.31 E-value=3.2e-07 Score=81.05 Aligned_cols=43 Identities=33% Similarity=1.116 Sum_probs=37.2
Q ss_pred CccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ +.||.||. |+ .+||+.|+. |...| .+.||||.|..
T Consensus 39 C-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p-~g~W~Cp~C~~ 84 (91)
T 1weu_A 39 C-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 84 (91)
T ss_dssp S-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCC-CSSCCCTTTCC
T ss_pred E-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCC-CCCEECcCccC
Confidence 6 8887654 68999999 66 799999999 88899 89999999983
No 194
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.31 E-value=1.7e-07 Score=86.85 Aligned_cols=50 Identities=32% Similarity=0.812 Sum_probs=44.2
Q ss_pred hcccccccccccccCc-------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKP-------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~P-------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+.+.|+||++.+..| +.++|||.||..|+.+|+.... . ||.||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~---CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-T---CPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-B---CTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-C---CCCCCCcCChh
Confidence 4578899999999987 8899999999999999998765 3 99999998875
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.6e-07 Score=87.81 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADIDK 78 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~~ 78 (764)
|+|+|+ .+|..+.|.|.+ ++++..|+...+++.|+++.++||+|.|+.|.++.|..++++.+||+|++++.+.++.
T Consensus 58 InLKVk-~dG~eV~FKIKr-tTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEET-TSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEcc-CChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 468887 489999999997 9999999999999999999999999999999999999999999999999999876553
No 196
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.29 E-value=2.8e-07 Score=75.54 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=45.3
Q ss_pred ccccccccccccCceec-CCCCcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCcc
Q psy11302 688 KFLCIICQELVYKPITL-DCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSN 746 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvtt-~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN 746 (764)
.|.|+||+++|.+||.+ +|||+||+.||.+|+..... ||.++..+... ++..|
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~----cP~t~~~L~~~--~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN----DPITNEPLSIE--EIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB----CTTTCCBCCGG--GCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC----CcCCcCCCChh--hcEEC
Confidence 58899999999999999 99999999999999987643 99999998775 44443
No 197
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.26 E-value=1.6e-07 Score=77.24 Aligned_cols=43 Identities=30% Similarity=1.097 Sum_probs=36.7
Q ss_pred CccCCCCCCCCCcEEEec--CC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ +.||.||. |+ .+||+.|+. |...| .+.||||.|..
T Consensus 14 C-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p-~~~w~Cp~C~~ 59 (62)
T 2g6q_A 14 C-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKP-KGKWYCPKCRG 59 (62)
T ss_dssp T-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHT
T ss_pred E-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCC-CCCEECcCccc
Confidence 6 7887644 58999999 55 999999999 77889 89999999973
No 198
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.22 E-value=4.5e-07 Score=74.79 Aligned_cols=49 Identities=27% Similarity=0.537 Sum_probs=42.2
Q ss_pred hcccccccccccccCceec--CCCCc-chHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITL--DCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt--~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.++..|+||++...+++.+ +|||. ||..|+.++...+. . ||.||..+..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~---CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-P---CPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC-C---CTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC-c---CCCcCcchhc
Confidence 3567899999999999987 99999 89999999987543 3 9999998865
No 199
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=3.6e-07 Score=80.74 Aligned_cols=52 Identities=25% Similarity=0.517 Sum_probs=41.0
Q ss_pred cccccccccccccCceec---CCCCcchHhHHHHHHhhc----CCCcCCCcc--cccc--ccc
Q psy11302 687 EKFLCIICQELVYKPITL---DCVHTFCHDCLKRAFKIE----SDACNSCPY--CRKE--MNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt---~CgH~FC~~CL~~~~~~~----~~~~~~CP~--CR~~--i~~ 738 (764)
+.+.|+||++.+..|+++ +|||.||..||...+... ......||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 578999999999988764 799999999999998752 101134999 9998 654
No 200
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.17 E-value=7.6e-08 Score=90.24 Aligned_cols=49 Identities=27% Similarity=0.782 Sum_probs=42.2
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCCC-----CCC--CCCCCCCCccCcCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPL-----ESV--PEDDEWFCPSCKRD 367 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL-----~~~--P~~g~W~C~~C~~~ 367 (764)
.+..|.+|+ +++++++||.|+++||..|+.|++ .++ | .+.|+|+.|...
T Consensus 56 ~~~~C~vC~---dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~-~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDE-NNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTC---CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCT-TSCCCCTTTCCG
T ss_pred CCCcCeecC---CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccC-CCCeEcCCcCCH
Confidence 455699999 778999999999999999999984 454 7 899999999854
No 201
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.15 E-value=7.6e-07 Score=73.15 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=41.3
Q ss_pred cccccccccccccCceec--CCCCc-chHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 687 EKFLCIICQELVYKPITL--DCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt--~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
....|+||++...+++.+ +|||. ||..|+.++...+. . ||.||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~---CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-S---CPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC-B---CTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC-c---CCCcCchhhc
Confidence 456899999999999887 99998 99999999886543 3 9999999865
No 202
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.15 E-value=4.4e-07 Score=98.74 Aligned_cols=51 Identities=25% Similarity=0.665 Sum_probs=44.5
Q ss_pred HHHhhhcccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 681 VLEHIQEKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 681 ~~~~l~e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
..+.+++++.|+||++.+.+|++++|||+ ||..|+..+ .. ||.||..+...
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~---CP~CR~~i~~~ 339 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RK---CPICRGIIKGT 339 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SB---CTTTCCBCCEE
T ss_pred HHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----Cc---CCCCCCCccCe
Confidence 45567788999999999999999999999 999999876 33 99999998764
No 203
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.11 E-value=1.4e-06 Score=79.23 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=38.8
Q ss_pred cccccccccccccCc------------------eecCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 687 EKFLCIICQELVYKP------------------ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 687 e~~~C~IC~e~l~~P------------------vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
++..|.||++.|..+ +.++|+|.|+..||..|+..+. + ||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~---CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-V---CPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-B---CSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-c---CcCCCCcce
Confidence 356799999988865 3479999999999999998754 4 999999864
No 204
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.6e-06 Score=72.35 Aligned_cols=46 Identities=33% Similarity=0.772 Sum_probs=39.6
Q ss_pred hcccccccccccccCceecCCCCc-chHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVYKPITLDCVHT-FCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~CgH~-FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
.+...|+||++...+++.+||||. ||..|+.. ... ||.||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~---CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQ---CPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSS---CTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCC---CCCCCcchhce
Confidence 357789999999999999999999 99999984 233 99999998764
No 205
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-06 Score=73.99 Aligned_cols=41 Identities=27% Similarity=0.946 Sum_probs=34.9
Q ss_pred cCCCCCCCCCcEEEecCC---CcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 321 ICAGKTSPDKLIVCEECQ---HYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 321 vC~~~~~~~~ll~Cd~C~---~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+|++..+ +.||.||.|+ .+||+.|+. |...| .+.||||.|.
T Consensus 10 ~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg--l~~~p-~~~w~Cp~C~ 53 (70)
T 1x4i_A 10 ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAP-KGKWYCPQCT 53 (70)
T ss_dssp TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCC-SSCCCCHHHH
T ss_pred EcCCCCC-CCEeEeCCCCCCccCCcccccc--cCcCC-CCCEECCCCC
Confidence 3776644 5899999976 799999999 77888 8999999998
No 206
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.01 E-value=2e-06 Score=74.27 Aligned_cols=69 Identities=10% Similarity=0.231 Sum_probs=59.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCee-----CCCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQ-----LEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~-----L~D~~tL~dy~I~~g~tI~Lv 71 (764)
|.|.||+.+| ++.|++++ ++||.+|+++|++.++++++.|.|.++-.. +.++.+|++.||++||+|.|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~-~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATK-RETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCS-SCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCC-cChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6789999988 56788886 999999999999999999999888776665 447889999999999999874
No 207
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.01 E-value=7.9e-07 Score=89.19 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=0.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
|+|+| +.+|+.+.|.|.+ ++++..|+...+++.|++++++|++|.|+.|.++.|.+++++++||+|++++.+.++
T Consensus 22 InLKV-~qdGseV~FKIKr-tTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEcc-CChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 67889 7899999999997 999999999999999999999999999999999999999999999999999877554
No 208
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.92 E-value=4.1e-06 Score=70.12 Aligned_cols=44 Identities=30% Similarity=0.835 Sum_probs=38.3
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
| +|++..+++.||.||.|..+||+.|+......+| ..|+|+.|.
T Consensus 22 C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~--~~~~C~~C~ 65 (68)
T 3o70_A 22 C-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCR 65 (68)
T ss_dssp S-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC--SSCCCHHHH
T ss_pred e-ECCCcCCCCCEEECCCCCccccccccCcCcccCC--CcEECCCCC
Confidence 7 8888877778999999999999999997665566 699999997
No 209
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.86 E-value=2.6e-06 Score=78.43 Aligned_cols=47 Identities=34% Similarity=0.825 Sum_probs=38.0
Q ss_pred cCccCCCC-------CCCCCcEEEecCCCcccccccCCCCC---CCCCCCCCCCccCc
Q psy11302 318 GCSICAGK-------TSPDKLIVCEECQHYYHIWCLKPPLE---SVPEDDEWFCPSCK 365 (764)
Q Consensus 318 ~C~vC~~~-------~~~~~ll~Cd~C~~~~H~~Cl~PpL~---~~P~~g~W~C~~C~ 365 (764)
.|.+|.+. +++++||+|+.|++.||++||.+++. .+| .+.|+|+.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVK-TYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHH-HTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccC-CCccCccccC
Confidence 36666543 34679999999999999999998753 467 8899999995
No 210
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.86 E-value=6.6e-05 Score=63.87 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=65.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCC-CeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVD-KQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~-~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
.+.+|......+.+.+.+ +++|.+|-..-..+.+|+++ ..||.|.|-.|..+.++.||.+.+||.|.+|+
T Consensus 11 ~~~~~~~~~~dl~f~I~~-~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPV-DFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEET-TSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecC-CCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 456788878888999997 99999999999999999999 99999999999999999999999999999986
No 211
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.84 E-value=7.1e-06 Score=67.57 Aligned_cols=49 Identities=24% Similarity=0.660 Sum_probs=38.2
Q ss_pred cCccCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 318 GCSICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 318 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.|.+|++..+ .+.||.||.|+.+||..|+............|+|+.|+.
T Consensus 8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3778887754 578999999999999999985544332136899999984
No 212
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.71 E-value=0.00012 Score=65.43 Aligned_cols=70 Identities=13% Similarity=0.287 Sum_probs=64.8
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+.|+|+..+|. .+.+.+.. ++++..|...-+++.|+++...||+|.|..|..+.|..+.++++||+|.++
T Consensus 26 I~LkV~~~dg~~~v~fkIk~-~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSR-DSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEET-TSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECC-CChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 36788888885 78899986 999999999999999999999999999999999999999999999999875
No 213
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.69 E-value=5.3e-06 Score=76.02 Aligned_cols=47 Identities=40% Similarity=0.827 Sum_probs=37.0
Q ss_pred cCccCCCC------CCCCCcEEEecCCCcccccccCC--CC-CCCCCCCCCCCccCc
Q psy11302 318 GCSICAGK------TSPDKLIVCEECQHYYHIWCLKP--PL-ESVPEDDEWFCPSCK 365 (764)
Q Consensus 318 ~C~vC~~~------~~~~~ll~Cd~C~~~~H~~Cl~P--pL-~~~P~~g~W~C~~C~ 365 (764)
.|.+|.+. +.+++||.|+.|+++||++||.. ++ ..+| .+.|+|+.|+
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 62 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALRWQCIECK 62 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSCCCCTTTC
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccccccccCC
Confidence 46666543 35679999999999999999974 23 2567 8999999996
No 214
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.68 E-value=1.3e-05 Score=67.70 Aligned_cols=45 Identities=20% Similarity=0.671 Sum_probs=35.7
Q ss_pred CccCCCCCCC-CCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 319 CSICAGKTSP-DKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
| +|++..+. +.||.||.|..+||+.|+........ ...|+|+.|.
T Consensus 19 C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~-~~~~~C~~C~ 64 (72)
T 1wee_A 19 C-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADAL-PSKFLCFRCI 64 (72)
T ss_dssp C-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCC-CSCCCCHHHH
T ss_pred e-eCCCccCCCCcEEECCCCCCccCCeeeccCccccC-CCcEECCCcc
Confidence 7 58887554 47999999999999999996543222 4799999998
No 215
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.68 E-value=5.9e-06 Score=76.41 Aligned_cols=46 Identities=26% Similarity=0.581 Sum_probs=0.4
Q ss_pred ccccccccccccCc-----------------ee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccc
Q psy11302 688 KFLCIICQELVYKP-----------------IT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMN 737 (764)
Q Consensus 688 ~~~C~IC~e~l~~P-----------------vt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~ 737 (764)
+-.|.||++.|..+ +. ++|+|.|+..||.+|+..+. . ||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~---CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-V---CPLDNREWE 111 (117)
T ss_dssp C-------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-c---CCCCCCeee
Confidence 34699999888763 22 58999999999999998754 3 999999864
No 216
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.64 E-value=1.5e-05 Score=63.15 Aligned_cols=43 Identities=28% Similarity=0.766 Sum_probs=36.5
Q ss_pred cCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 321 ICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 321 vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+|++..+++.||.||.|..+||+.|++.+...+| ..|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~--~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC--SSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC--CcEECcCCC
Confidence 5777767779999999999999999996655556 699999997
No 217
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.63 E-value=9.9e-05 Score=65.48 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEEeC-CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCC--CCcCcccc
Q psy11302 3 VKIRSL-DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLE--DEYMLFDY 60 (764)
Q Consensus 3 I~VKtl-~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~--D~~tL~dy 60 (764)
|+|=.+ .++.+.|.+.+ ++||..||++|++++|||+++|+|||.|+.|. .......|
T Consensus 15 vHVf~~~~a~~h~v~I~~-~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~ 74 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHS-YNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 74 (94)
T ss_dssp EEEEETTTTEEEEEEEET-TCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGS
T ss_pred EEEEEcccceEEEEEecc-chHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccC
Confidence 344333 56778999997 99999999999999999999999999999875 33344444
No 218
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.62 E-value=1.1e-05 Score=63.83 Aligned_cols=49 Identities=18% Similarity=0.647 Sum_probs=37.3
Q ss_pred CccCccCCCCCC-CCCcEEEe-cCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 316 DCGCSICAGKTS-PDKLIVCE-ECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 316 ~c~C~vC~~~~~-~~~ll~Cd-~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
.|.|-+|++..+ ++.||.|| .|+.+||+.|++-...... ...|+|+.|+
T Consensus 2 ~c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp CCSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred cccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccC-CCCEECCCCC
Confidence 366888988765 56899999 8999999999983322222 3789999995
No 219
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=3.5e-05 Score=66.46 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=42.1
Q ss_pred hccccccccccccc--CceecCCC-----CcchHhHHHHHHhhcC-CCcCCCcccccccccc
Q psy11302 686 QEKFLCIICQELVY--KPITLDCV-----HTFCHDCLKRAFKIES-DACNSCPYCRKEMNKS 739 (764)
Q Consensus 686 ~e~~~C~IC~e~l~--~Pvtt~Cg-----H~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~~ 739 (764)
.+...|.||++.+. +++.++|. |.|...||.+|+.... .. ||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~---CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSB---CSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCC---CCCCCCeeecC
Confidence 35678999998763 67888996 9999999999999764 34 99999998754
No 220
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.59 E-value=1.2e-05 Score=72.86 Aligned_cols=47 Identities=26% Similarity=0.761 Sum_probs=37.8
Q ss_pred ccCccCCCCC-CCCCcEEEe-cCCCcccccccCCCCCC--------CCCCCCCCCccCcC
Q psy11302 317 CGCSICAGKT-SPDKLIVCE-ECQHYYHIWCLKPPLES--------VPEDDEWFCPSCKR 366 (764)
Q Consensus 317 c~C~vC~~~~-~~~~ll~Cd-~C~~~~H~~Cl~PpL~~--------~P~~g~W~C~~C~~ 366 (764)
+.|.+|++.- +.+.|+.|| .|+.+||..|+. |+. .| .+.|+||.|..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~-~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEA-SAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCT-TEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCC-CCCEECccccC
Confidence 4588888873 346799998 999999999998 443 46 68999999984
No 221
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.56 E-value=9.1e-06 Score=67.44 Aligned_cols=47 Identities=28% Similarity=0.794 Sum_probs=38.0
Q ss_pred CccCccCCCCCC-CCCcEEEe-cCCCcccccccCCCCCC--------CCCCCCCCCccCc
Q psy11302 316 DCGCSICAGKTS-PDKLIVCE-ECQHYYHIWCLKPPLES--------VPEDDEWFCPSCK 365 (764)
Q Consensus 316 ~c~C~vC~~~~~-~~~ll~Cd-~C~~~~H~~Cl~PpL~~--------~P~~g~W~C~~C~ 365 (764)
...|.+|++..+ ...|+.|| .|..+||..|.. |+. .| .+.|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~-~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEA-SAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCT-TEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccC-CCcEECcCcc
Confidence 345889998754 56899999 999999999998 543 37 6899999996
No 222
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.55 E-value=0.00014 Score=73.78 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
+.|+|+. +|..+.+.+.. ++++.-|++..+++.|++++++||+|.|+.+.++.|..+..+.++|+|+++..+.+.
T Consensus 22 i~ikv~~-~~~~v~~~i~~-~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEEC-SSCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEEc-CCCEEEEEEee-CCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 3578887 78888999996 999999999999999999999999999999999999999999999999999865443
No 223
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.54 E-value=2.5e-05 Score=65.24 Aligned_cols=44 Identities=32% Similarity=0.878 Sum_probs=34.4
Q ss_pred CccCCCCCCCCCcEEEec--CCCcccccccCCCCCCCCC-----CCCCCCccCc
Q psy11302 319 CSICAGKTSPDKLIVCEE--CQHYYHIWCLKPPLESVPE-----DDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~PpL~~~P~-----~g~W~C~~C~ 365 (764)
| +|+...+.+.||.||. |..+||+.|++- ...|. ...|||+.|+
T Consensus 13 C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi--~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 13 C-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLI--PDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp C-TTCCCSCCSCEEECSCTTTCEEEETTTSCC--CSSTTSCCCCCSSCCCHHHH
T ss_pred e-ECCCCcCCCCEEEECCCCCCCeEchhhCCC--CcccccccCCCCcEECcCcc
Confidence 6 6888778889999995 999999999973 22220 2479999997
No 224
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.48 E-value=2.4e-05 Score=67.18 Aligned_cols=45 Identities=27% Similarity=0.844 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCcEEEe--cCCCcccccccCCCCCCCC------CCCCCCCccCcC
Q psy11302 319 CSICAGKTSPDKLIVCE--ECQHYYHIWCLKPPLESVP------EDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~PpL~~~P------~~g~W~C~~C~~ 366 (764)
| +|+...+.+.||.|| .|..+||+.|+.- ...| ....|+|+.|+.
T Consensus 19 C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi--~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 19 C-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL--PDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp C-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC--CCTTTCSCSCSCSSCCCHHHHH
T ss_pred e-ECCCcCCCCCEEEECCccCCccccCEEEcc--ccccccccccCCCCEECCCCCc
Confidence 7 788887778999999 9999999999984 3332 126899999983
No 225
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.47 E-value=9.2e-06 Score=79.75 Aligned_cols=47 Identities=32% Similarity=0.774 Sum_probs=36.5
Q ss_pred CccCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 319 CSICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 319 C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
| +|++..+ .+.|+.||.|+.+||..|+..+.......+.|+|+.|+.
T Consensus 11 C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 11 C-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp T-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred e-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 7 8887644 678999999999999999985433221257999999984
No 226
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.44 E-value=3.8e-05 Score=65.96 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=36.3
Q ss_pred CccCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 319 CSICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 319 C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
| +|++..+ .+.||.||.|..+||..|+.-..........|+|+.|...
T Consensus 15 C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 15 C-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp S-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred E-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 5 7887654 6799999999999999999843322211368999999843
No 227
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.41 E-value=1.2e-05 Score=68.50 Aligned_cols=45 Identities=24% Similarity=0.826 Sum_probs=36.0
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCC---C--CCCCCCCCccCc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLES---V--PEDDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~---~--P~~g~W~C~~C~ 365 (764)
| +|++..+.+.||.||.|+.+||+.|+...... + + ...|+|+.|.
T Consensus 19 C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~-~~~~~C~~C~ 68 (76)
T 1wem_A 19 C-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERN-GEDYICPNCT 68 (76)
T ss_dssp S-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHH-TCCCCCHHHH
T ss_pred E-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCC-CCeEECcCCc
Confidence 6 78887777799999999999999999843221 1 2 4789999998
No 228
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.33 E-value=3.1e-05 Score=84.13 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
+.|+|++ +|....+.+.. ++++..|+...+++.|++++++|++|.|+.|.++.|.+++++++||+|+++..+.++
T Consensus 22 I~LKV~~-~g~~v~FkIk~-~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEec-CChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 4678887 68888999997 999999999999999999999999999999999999999999999999999976543
No 229
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.22 E-value=3.1e-05 Score=65.94 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=34.9
Q ss_pred cCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 321 ICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 321 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+|++..+ .+.||.||.|..+||..|+.-.....+....|+|+.|.
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~ 59 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCE 59 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCc
Confidence 6776644 57899999999999999998543333323689999998
No 230
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.20 E-value=0.0011 Score=58.79 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=65.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
+.|+|+. +|.+..|.+-. ++...-|....+++.|++++..|++|.|..+.++.|-.+.++++||+|.+++
T Consensus 22 IniKV~~-~g~ev~FkIK~-tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRM-SEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECS-SSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEec-CChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 4688885 78999999996 9999999999999999999999999999999999999999999999999987
No 231
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.11 E-value=0.00014 Score=62.40 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=41.1
Q ss_pred CCccCccCCCCCCCCCcEEEecCCCcccccccCCC------------CCCCCCCCCCCCccCcC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPP------------LESVPEDDEWFCPSCKR 366 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~Pp------------L~~~P~~g~W~C~~C~~ 366 (764)
.|..|.||.... .+.++-|..|.+.||..||.++ +...+ +.-|.|+.|.+
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTTCC
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCC-CCCccccccch
Confidence 566699999875 5678889999999999999886 44456 77899999964
No 232
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.98 E-value=0.00082 Score=62.87 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=59.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCC-------------------------------------CeEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVD-------------------------------------KQRL 44 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~-------------------------------------~QrL 44 (764)
.|.|+.++|+..++.|+. +.+|.+++..|+...||+.. .|+|
T Consensus 13 ~LkV~llDg~~ktl~VD~-S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDD-SKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEE-CSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCC-CcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 389999999999999997 99999999999999998855 4455
Q ss_pred EE--CCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 45 FY--KGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 45 if--~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
-. .+..|+++.||.++||.++++|.|-.
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 32 34778889999999999999976643
No 233
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.88 E-value=0.00021 Score=70.99 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=37.0
Q ss_pred CccCCCCCCCC----CcEEEecCCCcccccccCCCC------CCCCCCCCCCCccCcCCCc
Q psy11302 319 CSICAGKTSPD----KLIVCEECQHYYHIWCLKPPL------ESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 319 C~vC~~~~~~~----~ll~Cd~C~~~~H~~Cl~PpL------~~~P~~g~W~C~~C~~~~~ 369 (764)
|.+|++.-+++ .||.||.|+.+||..|....- ..+|+...|+||.|+....
T Consensus 5 CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 66676654443 499999999999999998432 1235234899999996554
No 234
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.00085 Score=56.97 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=39.6
Q ss_pred cccccccccccccCcee-cCCCCcchHhHHHHHHhhcC-CCcCCCccccccccc
Q psy11302 687 EKFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIES-DACNSCPYCRKEMNK 738 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~-~~~~~CP~CR~~i~~ 738 (764)
....|.||++++..-+. ..|+|.|=..||.+||+.+. .. ||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~---CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR---CPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCC---CTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCC---CCCCcCcCCC
Confidence 35679999999875443 38999999999999998763 33 9999998764
No 235
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.76 E-value=0.00022 Score=78.60 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecCC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADID 77 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~~ 77 (764)
.|+|++ +|....|.+.. ++++..|+...+++.|+++.++|++|.|+.|.++.|..+.++++||+|++++.+.++
T Consensus 32 ~lkv~~-~~~~~~~~i~~-~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECC-CChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 567777 77888899986 999999999999999999999999999999999999999999999999999876543
No 236
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.56 E-value=0.0052 Score=53.92 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
|.|.|-..+++...|.|.| ++++.++-+...+++|+++++--|.|++|+|+-+..+.--||.+|..+.|+..
T Consensus 10 m~v~Vl~~n~rr~~VKvtp-~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTP-STVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCT-TSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECC-CCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 6789999999999999997 99999999999999999999999999999999999999999999999999853
No 237
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.47 E-value=0.0008 Score=61.64 Aligned_cols=41 Identities=29% Similarity=0.645 Sum_probs=31.1
Q ss_pred CCCcEEEecCCCcccccccCCCCCCCCC---CCCCCCccCcCCC
Q psy11302 328 PDKLIVCEECQHYYHIWCLKPPLESVPE---DDEWFCPSCKRDT 368 (764)
Q Consensus 328 ~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~---~g~W~C~~C~~~~ 368 (764)
+..||.|+.|+.+||..|+.++...+++ .+.|+||.|..+.
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 4568999999999999999988765542 1359999998543
No 238
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.39 E-value=0.0038 Score=53.85 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=58.0
Q ss_pred EEEEEe--CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC-----CCeEEEECCeeCCCCcCccccCcCCCCEEEE
Q psy11302 2 YVKIRS--LDGSKNCVLVLSKRTLISDMKTQIENTLDVPV-----DKQRLFYKGKQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 2 qI~VKt--l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~-----~~QrLif~GK~L~D~~tL~dy~I~~g~tI~L 70 (764)
.|+|.. -.++++.+.+.. ..||..|.+.|.+.++++. .+.|+.-.|..|.++.+|+||+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~-~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSD-YHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEET-TSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCC-chhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 344443 378999999997 9999999999999998664 3567888999999999999999999999876
No 239
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.36 E-value=0.0014 Score=59.52 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=41.2
Q ss_pred CCccCCCccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCC
Q psy11302 310 ETKHCKDCGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFC 361 (764)
Q Consensus 310 ~~~~c~~c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C 361 (764)
.+|.|..|.|.+|++... +.|..|+++||..|+.+.|...| ...|+|
T Consensus 52 g~W~Cp~c~C~~C~k~~~----~~C~~Cp~sfC~~c~~g~l~~~~-~~~~~c 98 (107)
T 4gne_A 52 GKWECPWHQCDECSSAAV----SFCEFCPHSFCKDHEKGALVPSA-LEGRLC 98 (107)
T ss_dssp SCCCCGGGBCTTTCSBCC----EECSSSSCEECTTTCTTSCEECT-TTTCEE
T ss_pred CCEECCCCCCCcCCCCCC----cCcCCCCcchhhhccCCcceecC-CCCcee
Confidence 457888888999997643 89999999999999999999989 888987
No 240
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.35 E-value=0.002 Score=57.44 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=36.2
Q ss_pred ccccccccccC-ceecCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 690 LCIICQELVYK-PITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 690 ~C~IC~e~l~~-Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.|++|.-.+.. ..++||.|.||..|...|.+.+... ||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~---Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKM---CPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCB---CTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCC---CcCcCCeeee
Confidence 57888754443 3457999999999999988776655 9999998865
No 241
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.26 E-value=0.0014 Score=74.12 Aligned_cols=38 Identities=29% Similarity=0.673 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 328 PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 328 ~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
+..|+.||.|+.+||..|.+-.-......+.|+||.|.
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~ 92 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCc
Confidence 45899999999999999998432222213689999998
No 242
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.19 E-value=0.0052 Score=74.14 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=61.0
Q ss_pred HhhhcccccccccccccCceecCCC-CcchHhHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHhC
Q psy11302 683 EHIQEKFLCIICQELVYKPITLDCV-HTFCHDCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTLF 757 (764)
Q Consensus 683 ~~l~e~~~C~IC~e~l~~Pvtt~Cg-H~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~lf 757 (764)
..+.++|.|||-+++|.+||+++.| ++|-+.+|++|+.... + ||.-|.++... .+.+|..|++.|+.+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-t---dP~Tr~~L~~~--~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-T---DPFNRMPLKLE--DVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-B---CTTTCCBCCGG--GCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-C---CCCCCCCCCcc--cccccHHHHHHHHHHH
Confidence 3456789999999999999999998 6999999999998744 4 99999999876 6899999999998875
No 243
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.13 E-value=0.0014 Score=70.58 Aligned_cols=54 Identities=30% Similarity=0.670 Sum_probs=40.3
Q ss_pred cccccccccccccC----ce----ecCCCCcchHhHHHHHHhhcCCCc-------CCCccccccccccc
Q psy11302 687 EKFLCIICQELVYK----PI----TLDCVHTFCHDCLKRAFKIESDAC-------NSCPYCRKEMNKSC 740 (764)
Q Consensus 687 e~~~C~IC~e~l~~----Pv----tt~CgH~FC~~CL~~~~~~~~~~~-------~~CP~CR~~i~~~~ 740 (764)
....|+||+..+.. |. ...|+|.|-..||.+||+....++ -.||.||++++.++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34579999998775 32 247999999999999998632100 23999999998764
No 244
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.12 E-value=0.00068 Score=76.87 Aligned_cols=46 Identities=22% Similarity=0.603 Sum_probs=34.7
Q ss_pred cCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 321 ICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 321 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
+|++..+ .+.||.||.|+.+||..|++-.-......+.|+|+.|..
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 7777644 678999999999999999984322222126899999983
No 245
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=96.01 E-value=0.0097 Score=55.63 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=65.6
Q ss_pred cceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccccccccccccccEEe
Q psy11302 133 GDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFNENLIGVRVM 212 (764)
Q Consensus 133 g~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~~l~~~~~~~ 212 (764)
+..|-+++ .-||||+|.|.+|..+ - +.|.|++. =....++.+.+|||...... + .++.+||.|-
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~~v~~d-----------~-~~V~f~n~-w~~~~~vp~~~vRlpP~~~~-~-~~f~~gd~VE 68 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVKDVHED-----------S-VTIFFENN-WQSERQIPFGDVRLPPPADY-N-KEITEGDEVE 68 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEEEECSS-----------E-EEEEETTC-TTCCEEEEGGGEECCCCC------CCCTTCEEE
T ss_pred ccEEEEec-CCCCEEEEEEEEEeCC-----------c-EEEEEccc-cCcceEechhhEEcCCCccc-c-cCCCCCCEEE
Confidence 56788999 5599999999988433 2 55777643 12357889999998776665 5 4689999999
Q ss_pred cccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 213 GNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
|=.+.++ .|--=||-+.|+.++. +++.-=++|
T Consensus 69 V~~~~~d-~ep~gWw~a~I~~~kg-----~f~~V~y~~ 100 (128)
T 3h8z_A 69 VYSRANE-QEPCGWWLARVRMMKG-----DFYVIEYAA 100 (128)
T ss_dssp EEECC----CCCEEEEEEEEEEET-----TEEEEEETT
T ss_pred EEecCCC-CCcCccEEEEEEEeeC-----CEEEEEEcC
Confidence 9776544 3333499999988763 466666666
No 246
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.99 E-value=0.0048 Score=50.08 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=38.7
Q ss_pred cccccccccccccCceecCCCC-----cchHhHHHHHHhhc-CCCcCCCcccccccc
Q psy11302 687 EKFLCIICQELVYKPITLDCVH-----TFCHDCLKRAFKIE-SDACNSCPYCRKEMN 737 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~CgH-----~FC~~CL~~~~~~~-~~~~~~CP~CR~~i~ 737 (764)
+...|.||++....|+.+||.+ .|=..||.+|+... ... ||.|++.+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~---C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSB---CTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCc---cCCCCCeee
Confidence 4568999998877888788654 78899999999864 344 999998875
No 247
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.99 E-value=0.006 Score=48.26 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=41.1
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCccccccccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRP 193 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ 193 (764)
+|+||++=|+-..-|.|+.|+|.+|.... -.|.|.|.||.+. ..++..+|||
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~----------~~~~V~fvDYGn~--e~v~~~~lrp 53 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSG----------MTAVVKFIDYGNY--EEVLLSNIKP 53 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CC----------SEEEEEETTTCCE--EEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCC----------CEEEEEEEccCCe--EEEeHHHEEE
Confidence 79999999998888999999999997542 4578999989554 4566778887
No 248
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.79 E-value=0.027 Score=48.43 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=58.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCC---CCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLE---DEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~---D~~tL~dy~I~~g~tI~Lvv 72 (764)
.|.||..+|+.+.-.... ++||.+|..-|.. .+.++....|+ |-.|.|. .+.||.+.|+.++++|.|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~-~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLA-SNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEET-TSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCC-CCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 689999999988777776 9999999999998 67788888998 5578883 47899999999998888753
No 249
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=95.71 E-value=0.01 Score=48.57 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=47.3
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
.-|.|||-|=||=..-...|+|+|..|+.+ +-+|.|+|.+ +-+.++++++|||-.
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSits~----------~~~Y~VkfKd---gT~e~L~~kDIKp~~ 65 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHDST----------SQLYTVKYKD---GTELELKENDIKSGP 65 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEETT----------TTEEEEECTT---SCEEEEETTTEECCC
T ss_pred eEeecCCEEEEEccCCccceEEEEEEeccC----------CceEEEEecC---CCEEEechhccccCC
Confidence 379999999999999999999999999932 3799999874 556899999999954
No 250
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=95.61 E-value=0.011 Score=48.38 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=47.1
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccC
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPL 194 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~r 194 (764)
.-|.|||-|=||=..-...|+|+|..|+.+ +-+|-|+|.+ +-+.++++++|||-
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~s~----------~~~Y~V~fKd---gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYDDA----------SHLYTVKYKD---GTELALKESDIRLQ 61 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEETT----------TTEEEEEETT---SCEEEEEGGGEECS
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEeccC----------CceEEEEecC---CCEEeechhccccc
Confidence 479999999999999999999999999932 3799999874 55689999999996
No 251
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.43 E-value=0.0098 Score=51.56 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCcCCccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcc
Q psy11302 123 KPADSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPK 196 (764)
Q Consensus 123 ~d~~~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~ 196 (764)
.+.+..-|+|||.|=||= +-|.||+|+|..|+.. -.|-|+|+| .-+..++..+|+|-.+
T Consensus 15 ~~~~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-----------~~YtV~F~D---G~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 15 FQGGSSEFQINEQVLACW-SDCRFYPAKVTAVNKD-----------GTYTVKFYD---GVVQTVKHIHVKAFSK 73 (85)
T ss_dssp ------CCCTTCEEEEEC-TTSCEEEEEEEEECTT-----------SEEEEEETT---SCEEEEEGGGEEECC-
T ss_pred cccCCcccccCCEEEEEe-CCCCEeeEEEEEECCC-----------CeEEEEEeC---CCeEEecHHHcccCCh
Confidence 344578999999999999 9999999999999876 359999874 4447788888888554
No 252
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.008 Score=50.99 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=43.9
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
.-++|||.|=|+=. -|.|++|.|.+|+.. -.|.|.|+|| . ...++..+|||-...
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-----------~~~~V~f~Dy-n--~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-----------GTFTVQFYDG-V--IRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-----------SSEEEEETTS-C--EEEECGGGEECCCGG
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-----------CEEEEEEecC-C--eEEecHHHCeeCChh
Confidence 36899999999976 899999999999643 2489999988 3 345567788887654
No 253
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=95.31 E-value=0.038 Score=48.31 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=47.6
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCc--ccccccccccCccccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGS--STMKFDDIRPLPKHLI 199 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~ir~ra~~~~ 199 (764)
-|+||+.|+|.| ..+.|++|.|+.|... +--|+|-|+++...-- +.+.+.+|+|.-.-.+
T Consensus 19 ~F~vGmkLEA~D-~~~~~~~a~i~~v~~~----------~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g~~~~ 80 (88)
T 2eqm_A 19 TFEIGARLEALD-YLQKWYPSRIEKIDYE----------EGKMLVHFERWSHRYDEWIYWDSNRLRPLERPAL 80 (88)
T ss_dssp CCCSSCEEEEEC-TTSCEEEEEEEEEETT----------TTEEEEEESSSTTTEEEEEETTSCCEECCCCCCT
T ss_pred cCCCCCEEEEEc-CCCCeeEEEEEEEecc----------CCEEEEEECCCCCcccEEeeCCCCcEeccccccc
Confidence 699999999999 6789999999866543 2368999999854322 7788889999876655
No 254
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=95.26 E-value=0.015 Score=46.81 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=43.1
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccC
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPL 194 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~r 194 (764)
-|++|+++=|+=..-|.|+.|+|++|... +-.|.|.|.||.+. ..++..+|||-
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~----------~~~~~V~f~DYGn~--e~v~~~~Lr~~ 56 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK----------RETCVVVYTGYGNR--EEQNLSDLLSP 56 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT----------TTEEEEEETTTTEE--EEEEGGGCBCT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC----------CCEEEEEEEcCCCE--EEEcHHHeeCC
Confidence 58999999999877799999999999643 24688999989654 45567788874
No 255
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.24 E-value=0.0013 Score=73.66 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=34.9
Q ss_pred ccCCCCCC-CCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 320 SICAGKTS-PDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 320 ~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
.+|++..+ .+.|+.||.|+.+||..|++-.-...+..+.|+|+.|..
T Consensus 8 CiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred EeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 36776644 689999999999999999983322222126899999983
No 256
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=95.12 E-value=0.015 Score=47.76 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=44.3
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccC
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPL 194 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~r 194 (764)
..+++||++=|+=..-|.|+.|+|.+|.... -.|.|.|.||.+. ..+++++|||.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~----------~~~~V~fvdYGn~--e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEEN----------GTAAITFAGYGNA--EVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTT----------TEEEEEETTTTEE--EEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCC----------CEEEEEEEecCCE--EEEeHHHcEeC
Confidence 4689999999998788999999999998532 3588999999554 44567888874
No 257
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=94.65 E-value=0.023 Score=47.23 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=44.2
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPK 196 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~ 196 (764)
-.|+|||.|=||= +-|.||+|+|..|+.. -.|-|+|+| .-+..++..+|+|-.+
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~-----------~~Y~V~F~d---G~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-----------GTYTVKFYD---GVVQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTT-----------SEEEEEETT---SCEEEEEGGGEEECC-
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCC-----------CeEEEEEeC---CceEEEeHHHcccCCc
Confidence 3699999999997 9999999999999876 359999874 4457788888888654
No 258
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=94.43 E-value=0.028 Score=49.16 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=45.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHL 198 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~ 198 (764)
.++||++|=|+-..-|.|+.|+|..|.... -.|.|.|.||.+..+ +.+.+|||.....
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~----------~~~~V~fiDYGN~E~--V~~~~Lrp~~~~~ 67 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKR----------ETCVVVYTGYGNREE--QNLSDLLSPICEV 67 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTT----------TEEEEEETTTCCEEE--EEGGGCBCCC---
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCC----------CEEEEEEecCCCEEE--EcHHHcccCChhh
Confidence 689999999999889999999999997641 358899999966544 5677899865443
No 259
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.39 E-value=0.18 Score=45.58 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=59.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCC--C-CcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLE--D-EYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~--D-~~tL~dy~I~~g~tI~Lvv 72 (764)
.|.||.++|+.+.-.+.. ++||.+|.+-|....+.+.....|+ |--|.|. | +.||.+.|+.+..+|++..
T Consensus 15 ~IqIRlpdG~rl~~rF~~-~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPS-DAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECT-TSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCC-CCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 689999999988888887 9999999999999888777777887 5688886 3 6899999999887776653
No 260
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=94.21 E-value=0.037 Score=47.18 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=44.5
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
..+++|+++=|+-..-|.|+.|+|++|.... -.|.|.|.||.+. ..++..+|||....
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~----------~~~~V~fvDYGN~--e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSG----------MTAVVKFIDYGNY--EEVLLSNIKPIQTE 73 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTS----------SEEEEEETTTCCE--EEEEGGGEECC---
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCC----------CEEEEEEEcCCCe--EEEeHHHeEECChh
Confidence 4689999999998888999999999997542 4678999999554 45667888886543
No 261
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.81 E-value=0.023 Score=50.15 Aligned_cols=33 Identities=30% Similarity=0.840 Sum_probs=28.2
Q ss_pred ccccccccccc-ccCcee--cCCCCcchHhHHHHHH
Q psy11302 687 EKFLCIICQEL-VYKPIT--LDCVHTFCHDCLKRAF 719 (764)
Q Consensus 687 e~~~C~IC~e~-l~~Pvt--t~CgH~FC~~CL~~~~ 719 (764)
+++.|+||.+. +..|+. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46899999975 778888 8999999999999843
No 262
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=92.72 E-value=0.012 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=41.6
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPK 196 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~ 196 (764)
.|++||.|=|+=. -|.||+|.|..|... -.|.|.|+| .-...++..+|||..+
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~~-----------~~y~V~F~D---Gn~E~V~~s~LrPl~~ 58 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNKD-----------GTYTVKFYD---GVVQTVKHIHVKAFSK 58 (81)
Confidence 5899999999976 899999999999743 268999885 2345666778888643
No 263
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=93.16 E-value=0.18 Score=46.67 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=58.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeC--CC-CcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQL--ED-EYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L--~D-~~tL~dy~I~~g~tI~Lvv 72 (764)
.|.||.++|..+.-.+.. ++||.+|..-|... +.++....|+ |-.|.| .| +.||.+.++.+..+|+|.-
T Consensus 45 ~IqIRlPdG~rl~~rF~~-~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPE-QAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEET-TSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCC-CCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 689999999988888887 99999999999887 7777888888 568889 34 7899999999888777653
No 264
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=92.71 E-value=0.093 Score=44.73 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=46.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~ 199 (764)
-+++|++|=|+-..-|.|+.|+|++|... +-.|.|.|.||.+... ++..+|||..-.++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~----------~~~~~V~fiDYGN~e~--V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSS----------GMTAVVKFTDYGNYEE--VLLSNIKPVQTEAW 67 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSS----------SSEEEEEETTTTEEEE--EEGGGEEECCCCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCC----------CCEEEEEEEcCCCeEE--EcHHHeEeCCHHHh
Confidence 57999999999877899999999998642 2468899998965544 45678888776655
No 265
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.41 E-value=0.033 Score=51.18 Aligned_cols=37 Identities=22% Similarity=0.652 Sum_probs=29.7
Q ss_pred CcEEEecCCCcccccccCCCC------CCCCCCCCCCCccCcC
Q psy11302 330 KLIVCEECQHYYHIWCLKPPL------ESVPEDDEWFCPSCKR 366 (764)
Q Consensus 330 ~ll~Cd~C~~~~H~~Cl~PpL------~~~P~~g~W~C~~C~~ 366 (764)
.|+.||.|..+||..|..-.- ..+|+...|.||.|..
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 388999999999999987432 4567556899999984
No 266
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.50 E-value=0.72 Score=41.54 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=56.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEE--ECCeeCC--CCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLF--YKGKQLE--DEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLi--f~GK~L~--D~~tL~dy~I~~g~tI~Lvv 72 (764)
.|.||..+|+.+.-.+.. ++||.+|..-|... +..+....|+ |-.|.|. .+.||.+.||.+..+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~-~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFK-SWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEES-SSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCC-CCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 689999999988777776 99999999999965 5566777887 5588886 47899999999888876643
No 267
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=91.43 E-value=0.14 Score=47.77 Aligned_cols=57 Identities=11% Similarity=0.244 Sum_probs=40.5
Q ss_pred cccccceeeeeecccC----cccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 129 YYKVGDYVDAILETEG----AWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~g----aWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
-|.+||-|++-...-. .||.|+|+.+.- -.|.|.|+++...--.-+...+|||....
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg------------~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG------------DFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET------------TEEEEEETTC----CEEECGGGEEECCCC
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC------------CEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 4789999999886555 799999988872 38999999887655555567888886543
No 268
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=90.60 E-value=0.48 Score=44.00 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=55.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhc-CCCCCCeEEE--ECCeeCCC-CcCccccCcCCCCEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTL-DVPVDKQRLF--YKGKQLED-EYMLFDYNVNLNDVIQ 69 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~-gip~~~QrLi--f~GK~L~D-~~tL~dy~I~~g~tI~ 69 (764)
.|.||..+|..+.-.+.. ++||.+|.+-|.... +.......|+ |-.|.|.| +.||.+.|+.+..+|+
T Consensus 54 ~IqIRlpdG~rl~~rF~~-~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNH-SHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CEEEEETTTTEEEEECCS-SCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCC-CCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 589999999988888887 999999999999863 4556777887 56899975 6899999998765544
No 269
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=89.67 E-value=0.27 Score=40.81 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=41.0
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCC--CCccccccccccc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKD--DGSSTMKFDDIRP 193 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~ir~ 193 (764)
..|+||..|.|.| ..+.|++|.|++|... +-.+.|-|++... +.-+.+.+-+|+|
T Consensus 11 ~~F~vGmkLEa~d-~~~p~~~AtV~~v~~~----------~~~~~VhfdGw~~~~D~W~~~dS~~i~P 67 (69)
T 3sd4_A 11 ISFEVGAQLEARD-RLKNWYPAHIEDIDYE----------EGKVLIHFKRWNHRYDEWFCWDSPYLRP 67 (69)
T ss_dssp CCCSTTCEEEEEC-TTSCEEEEEEEEEETT----------TTEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred CCcCCCCEEEEEE-CCCCccccEEEEEecc----------CCEEEEEeCCCCCCCCEEEcCCCCCeeE
Confidence 3699999999999 6788999999998533 1346899987633 2236777777777
No 270
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=89.23 E-value=1.5 Score=39.91 Aligned_cols=62 Identities=27% Similarity=0.263 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc--CCC------CCCeEEEE----CCeeCCCC-------------cCccccCcCC
Q psy11302 10 GSKNCVLVLSKRTLISDMKTQIENTL--DVP------VDKQRLFY----KGKQLEDE-------------YMLFDYNVNL 64 (764)
Q Consensus 10 Gk~~~l~v~~~~~TV~~LK~~I~~~~--gip------~~~QrLif----~GK~L~D~-------------~tL~dy~I~~ 64 (764)
+..+.+.|.. .+||.++|++|-..+ |.| +++..|=+ .|++|.|. .||+.|+|.+
T Consensus 23 ~~~i~vkVLd-CDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLN-CDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEET-TCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeec-cCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4557888887 999999999998763 444 34555666 36778663 3789999999
Q ss_pred CCEEEEEE
Q psy11302 65 NDVIQLMI 72 (764)
Q Consensus 65 g~tI~Lvv 72 (764)
|++|.|+-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998864
No 271
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=88.93 E-value=0.32 Score=47.71 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCCCCC-CCCcEEEecCCCcccccccCCCCCC-CCCCCCC----CCccCcCCCccccc
Q psy11302 322 CAGKTS-PDKLIVCEECQHYYHIWCLKPPLES-VPEDDEW----FCPSCKRDTSEVIA 373 (764)
Q Consensus 322 C~~~~~-~~~ll~Cd~C~~~~H~~Cl~PpL~~-~P~~g~W----~C~~C~~~~~~~~~ 373 (764)
|++..+ ...+|.|+.|.++||..|+..+... +| +++ .|..|.....|...
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp--~~~fY~F~C~~C~~~g~E~f~ 65 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLP--FMTNYSFHCNVCHHSGNTYFL 65 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCT--TCCSEEEECTTTSTTSSCEEE
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccc--cceeEEEEccccCCCCcceeE
Confidence 565433 5689999999999999999865443 34 444 49999876655443
No 272
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.13 E-value=0.88 Score=38.24 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=47.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+||........+++.. ..||.+|-++ .|++++.--++-+|+.+..+.. .+||.|.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~-g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDD-DGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECST-TCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCC-CCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEEE
Confidence 9999999855555688776 8899988764 7899999988889999876652 3489888763
No 273
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=87.67 E-value=0.53 Score=41.00 Aligned_cols=57 Identities=25% Similarity=0.493 Sum_probs=43.0
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHL 198 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~ 198 (764)
..++|++|=|+-..-|.|+.|+|++|... -.+.|.|-||... ..++..+|||-....
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-----------~~~~V~fvDyGn~--e~v~~~~lr~l~~~f 83 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-----------GNLDLYFVDFGDN--GDCPLKDLRALRSDF 83 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT-----------SCEEEEETTTCCE--EEECGGGCEECCGGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-----------CeEEEEEEcCCCe--EEEEHHHhhhcCHHH
Confidence 56899999999877899999999999532 2467888888554 455677888765443
No 274
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=87.44 E-value=0.6 Score=39.62 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=36.3
Q ss_pred Cccccccceeeeeec--ccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 127 SQYYKVGDYVDAILE--TEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 127 ~g~ykvg~~vD~~d~--~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
.--|.||+.|-|+.. ..|.|++|+|++|.... ...-|.|-|.++
T Consensus 3 ~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~--------~~~~Y~VHY~gw 48 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDD--------GEVLYLVHYYGW 48 (76)
T ss_dssp CCCSSTTCEEEEEEEETTEEEEEEEEEEEEEEET--------TEEEEEEEETTS
T ss_pred ccccCCCCEEEEEeCCCCCCCEEEEEEEEEEccC--------CceEEEEEeCCc
Confidence 346899999999986 34799999999998763 347899999987
No 275
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.26 E-value=0.37 Score=41.76 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=42.0
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
-.|+|++|=|+=..-++|+-|+|.+|.... .-+|.|-||....+| +..++||-.
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~-----------~veVl~~DyGn~~~V--~~~~LR~L~ 74 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDT-----------LVEVLLYDVGVELVV--NVDCLRKLE 74 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSSS-----------EEEEECTTTCCEEEE--ETTTEEECC
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCCC-----------eEEEEEEccCCEEEE--EccccccCC
Confidence 679999999997777899999999998763 267888777555444 466788854
No 276
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=86.87 E-value=0.7 Score=41.42 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=35.1
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
..|.+|+.|-|.. .|.|++|+|++|.... ...-|.|-|.++
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~~~--------~~~~Y~VHY~Gw 61 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAIKD--------KQVKYFIHYSGW 61 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEEET--------TEEEEEEEETTS
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEEcC--------CCcEEEEEeCCc
Confidence 3689999999988 5899999999999752 447899999987
No 277
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.51 E-value=3.4 Score=41.99 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcCCCCC-CeEEEE-----CCeeCCC-CcCccccCcCCCCEEEEEEeecC
Q psy11302 13 NCVLVLSKRTLISDMKTQIENTLDVPVD-KQRLFY-----KGKQLED-EYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 13 ~~l~v~~~~~TV~~LK~~I~~~~gip~~-~QrLif-----~GK~L~D-~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
+++.++. .+||.+|++.+.+.++++++ +.||-. ....|.| +.||.+++|..+..|.|=++...
T Consensus 154 ~~~~~Sk-~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 154 LSCHFSK-ADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEECT-TCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred EEEEecc-cCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3456675 99999999999999999997 688875 2456765 58999999999999999887543
No 278
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.89 E-value=0.55 Score=48.20 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=39.3
Q ss_pred ccccccccccccCcee-cCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 688 KFLCIICQELVYKPIT-LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 688 ~~~C~IC~e~l~~Pvt-t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
...|.||.+++..-+. ..|+|.|-..|+..|++.+.. ..||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~--~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSS--CBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCC--CCCCCCCCCCCCC
Confidence 5679999999886554 249999999999999986541 2399999987653
No 279
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.07 E-value=0.96 Score=49.25 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=51.4
Q ss_pred hhcccccccccccccCcee-cCCCCcchHh--HHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 685 IQEKFLCIICQELVYKPIT-LDCVHTFCHD--CLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvt-t~CgH~FC~~--CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+.-.+.||+-...|..|+. ..|.|.-|.+ -+........ .+.||.|.+.+... ++.++..+..+|...
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~--~W~CPIC~k~~~~~--dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIP--TWQCPVCQIDIALE--NLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSC--CCBCTTTCCBCCGG--GEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCC--ceeCCCCCcccCHH--HeeEcHHHHHHHHhc
Confidence 4457899999999999998 4799995544 3333332222 37799999998876 799999999998765
No 280
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.02 E-value=3.1 Score=44.94 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=57.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcC----CCCCCeEEEE------CCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLD----VPVDKQRLFY------KGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~g----ip~~~QrLif------~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
.++|... +.+.++.+++ ++||.++..+|.++.. .++++--|+- .|.-|++.+||..|++++|+.|+..
T Consensus 5 ~~~~~~~-~~~~~~~f~~-~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEP-STMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECT-TCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECC-CCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 4566655 7777999998 9999999999988874 4678888888 5677999999999999999988876
Q ss_pred E
Q psy11302 72 I 72 (764)
Q Consensus 72 v 72 (764)
-
T Consensus 83 ~ 83 (371)
T 3ivf_A 83 K 83 (371)
T ss_dssp E
T ss_pred C
Confidence 4
No 281
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=83.48 E-value=4.6 Score=37.43 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=48.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhc--CCC------CCCeEEEE----CCe-eCCCC-------------cCccccCc
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTL--DVP------VDKQRLFY----KGK-QLEDE-------------YMLFDYNV 62 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~--gip------~~~QrLif----~GK-~L~D~-------------~tL~dy~I 62 (764)
++..+.+.|.. .+||.++|++|-+.+ ++| +++..|=+ .|. +|.|. .||..|+|
T Consensus 15 ~~~~i~VkVLd-CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 15 GMDSLSVRAMD-TDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCCEEEEEET-TSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCCceeeeeec-cCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 45567888887 999999999998873 344 45666776 344 37652 47999999
Q ss_pred CCCCEEEEEEe
Q psy11302 63 NLNDVIQLMIK 73 (764)
Q Consensus 63 ~~g~tI~Lvvr 73 (764)
.+|++|.|..+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999998754
No 282
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=83.00 E-value=3.7 Score=33.95 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=45.7
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCCcHHHHHHHHHhhcCCCC--CCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGS-KNCVLVLSKRTLISDMKTQIENTLDVPV--DKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk-~~~l~v~~~~~TV~~LK~~I~~~~gip~--~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+||.+..- ...+++. ..||.+|.+.+....++.. ....+.-+|+.+.+. +.-+++||.|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~~--~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFIK--ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEEE--CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEeeC--CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----CcCCCCCCEEEEEC
Confidence 88999988431 1346664 5899999999987543322 445677788875432 34488999999873
No 283
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=82.80 E-value=0.12 Score=56.49 Aligned_cols=66 Identities=26% Similarity=0.642 Sum_probs=45.6
Q ss_pred CCCCCCcCCc-------CCccCCCccCccCCCCCCCCCcEEEe--cCCCcccccccCCCCC-----CCCCCCCCCCccCc
Q psy11302 300 VPECTTCNDV-------ETKHCKDCGCSICAGKTSPDKLIVCE--ECQHYYHIWCLKPPLE-----SVPEDDEWFCPSCK 365 (764)
Q Consensus 300 ~~~C~~C~~~-------~~~~c~~c~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~PpL~-----~~P~~g~W~C~~C~ 365 (764)
..-|..|++. ......+.-|..|+ +++.+++|| .|.+.|...|+.--+- ++-....|.|--|.
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~---~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICC---SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTC---CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcC---CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 4456777732 11223455699999 567999999 9999999999864331 22224679999999
Q ss_pred CCC
Q psy11302 366 RDT 368 (764)
Q Consensus 366 ~~~ 368 (764)
...
T Consensus 147 p~p 149 (386)
T 2pv0_B 147 PSS 149 (386)
T ss_dssp SCC
T ss_pred Ccc
Confidence 665
No 284
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=82.73 E-value=7.7 Score=31.74 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=44.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+|..-.+ ...+++.. ..||.+|.+.+ ++++....+..+|..+..+. -+++||.|.++-
T Consensus 5 m~i~vNg~~~-~~~~~~~~-~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDG-KKILESGA-PRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTE-EEEEEESS-CCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCccC-ceeEECCC-CCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 5666655422 23556665 68999999876 56777778889999997665 478899999874
No 285
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=82.33 E-value=3.6 Score=38.66 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=46.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc--CCCC------CCeEEEE----CCe-eCCCC-------------cCccccCcCC
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTL--DVPV------DKQRLFY----KGK-QLEDE-------------YMLFDYNVNL 64 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~--gip~------~~QrLif----~GK-~L~D~-------------~tL~dy~I~~ 64 (764)
..+.+.|.. .+||.++|++|-+.+ |+|- ++.-|=+ +|+ +|.|. .||+.|+|.+
T Consensus 41 ~~i~VkVLd-CDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLD-CDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEET-TCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEec-cccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888887 999999999998874 4543 3344544 343 46653 3899999999
Q ss_pred CCEEEEEEee
Q psy11302 65 NDVIQLMIKA 74 (764)
Q Consensus 65 g~tI~Lvvr~ 74 (764)
|++|.|+-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999998654
No 286
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.22 E-value=1.3 Score=48.19 Aligned_cols=68 Identities=16% Similarity=0.339 Sum_probs=51.6
Q ss_pred hhcccccccccccccCcee-cCCCCcchH--hHHHHHHhhcCCCcCCCcccccccccccCCCCccHHHHHHHHHh
Q psy11302 685 IQEKFLCIICQELVYKPIT-LDCVHTFCH--DCLKRAFKIESDACNSCPYCRKEMNKSCLETHSNDALQSILSTL 756 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvt-t~CgH~FC~--~CL~~~~~~~~~~~~~CP~CR~~i~~~~~~~~vN~~L~~lIe~l 756 (764)
+.-.+.||+-...|..|+. ..|.|.-|- .-+........ .+.||.|.+.+... ++.++..+..+|...
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~--~W~CPiC~k~~~~~--dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKP--TWICPVCDKKAAYE--SLILDGLFMEILNDC 282 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSC--CCBCTTTCSBCCGG--GEEEBHHHHHHHTTC
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCC--CeECCCCCcccCHH--HeEEcHHHHHHHHhC
Confidence 4557899999999999998 579999554 43343333322 37799999998876 799999999998764
No 287
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=81.95 E-value=0.86 Score=40.89 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=42.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
..++|++|=|+-..-|.|+-|+|++|... -.+.|.|-||... ..++..+|||-...
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-----------~~~~V~fvDyGn~--e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-----------GNLDLYFVDFGDN--GDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-----------SCEEEEETTTCCE--EEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-----------CeEEEEEEeCCCe--EEEehHHhhcCcHH
Confidence 46899999999877899999999988642 2467888888555 44556778876543
No 288
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.27 E-value=1.9 Score=37.25 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=55.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE---CCeeCCCCcCccccCcCC
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY---KGKQLEDEYMLFDYNVNL 64 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif---~GK~L~D~~tL~dy~I~~ 64 (764)
.+.|.....+.+.+.|+| ..++.+|--.|.++-.++|+.-.|.- .+..|+-+.+|.||||++
T Consensus 12 RLvVNy~~tQKtVvRVSP-~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSP-HASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECS-SSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCC-CCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 466777788889999998 99999999999999999999988884 667888899999999987
No 289
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.97 E-value=1.3 Score=38.49 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=35.7
Q ss_pred cccccceeeeeec---ccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCC
Q psy11302 129 YYKVGDYVDAILE---TEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYK 179 (764)
Q Consensus 129 ~ykvg~~vD~~d~---~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~ 179 (764)
-|+||+.|-|... ..|.|++|+|++|.... ....|+|-|.++.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~--------~~~~YyVHY~g~N 54 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS--------GRKLFYVHYIDFN 54 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSS--------SCCCEEEEECSSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC--------CCcEEEEEeCCCC
Confidence 6899999999985 58899999999987642 3477999999883
No 290
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=80.80 E-value=0.21 Score=48.14 Aligned_cols=51 Identities=20% Similarity=0.661 Sum_probs=38.1
Q ss_pred CCccCccCCCCCCCCCcEEEe--cCCCcccccccCCCC-----CCCCCCCCCCCccCcCCC
Q psy11302 315 KDCGCSICAGKTSPDKLIVCE--ECQHYYHIWCLKPPL-----ESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 315 ~~c~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~PpL-----~~~P~~g~W~C~~C~~~~ 368 (764)
.+.-|.+|+ +++.+++|| .|.+.|-..|+.--+ .++-....|.|.-|.+.+
T Consensus 78 ~~~yC~wC~---~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICC---GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTS---CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEec---CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 345599999 568999999 899999999975322 222225689999999654
No 291
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=80.61 E-value=9.1 Score=33.32 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=47.4
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCCcHHHHHHHHHhhcC-C----------CCCCeEEEECCeeCCCCcCccccCc
Q psy11302 1 MYVKIRSLD------G-SKNCVLVLSKRTLISDMKTQIENTLD-V----------PVDKQRLFYKGKQLEDEYMLFDYNV 62 (764)
Q Consensus 1 MqI~VKtl~------G-k~~~l~v~~~~~TV~~LK~~I~~~~g-i----------p~~~QrLif~GK~L~D~~tL~dy~I 62 (764)
|+|+||.+- | ....+++.. ..||.+|.+.+..... + ......+..+|+.... ++-|
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~-~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCC-CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 788888762 4 466788765 7899999999987642 1 1244568889988864 4557
Q ss_pred CCCCEEEEE
Q psy11302 63 NLNDVIQLM 71 (764)
Q Consensus 63 ~~g~tI~Lv 71 (764)
++||.|.++
T Consensus 84 ~dGDeV~i~ 92 (98)
T 1vjk_A 84 KDGDVVGVF 92 (98)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 899998886
No 292
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=80.17 E-value=2.2 Score=42.88 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=53.1
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccccccc-cccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFN-ENLI 207 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~-~l~~ 207 (764)
--+||.-|=++- +.+.|+.++|++|+... ...-|+|+|++.++ ..++ +.--|+++- ++. .|.|
T Consensus 8 ~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~--------~g~~YkVkF~~~g~---~ivs---~~hiA~~~~-p~~~~l~v 71 (213)
T 3dlm_A 8 DLIVSMRILGKK-RTKTWHKGTLIAIQTVG--------PGKKYKVKFDNKGK---SLLS---GNHIAYDYH-PPADKLYV 71 (213)
T ss_dssp TEETTCEEEEEC-TTSBEEEEEEEEEEEET--------TEEEEEEEESSSCE---EEEC---GGGEEESSC-CCGGGCCT
T ss_pred cEEEccEEEEEe-cCCcEEEEEEEEEEECC--------CCeEEEEEEcCCCC---EEee---cceEEEecC-CCccEEeE
Confidence 456888888888 55999999999999983 34779999995433 2333 333455433 444 8999
Q ss_pred ccEEecccC
Q psy11302 208 GVRVMGNYN 216 (764)
Q Consensus 208 ~~~~~~~~~ 216 (764)
|-+|.++|-
T Consensus 72 G~RVVA~~~ 80 (213)
T 3dlm_A 72 GSRVVAKYK 80 (213)
T ss_dssp TCEEEEEEE
T ss_pred EEEEEEEec
Confidence 999999995
No 293
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=80.10 E-value=3.8 Score=37.55 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=46.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc--CCC------CCCeEEEE-CC---e-eCCCC-------------cCccccCcC
Q psy11302 10 GSKNCVLVLSKRTLISDMKTQIENTL--DVP------VDKQRLFY-KG---K-QLEDE-------------YMLFDYNVN 63 (764)
Q Consensus 10 Gk~~~l~v~~~~~TV~~LK~~I~~~~--gip------~~~QrLif-~G---K-~L~D~-------------~tL~dy~I~ 63 (764)
...+.+.|.. .+||.++|++|-..+ |.| +++..|-+ .| . +|.|. .||+.|+|.
T Consensus 26 ~~~i~VkVLd-CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 104 (117)
T 4e74_A 26 SPEVPVKILN-CDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVP 104 (117)
T ss_dssp CCCEEEEEET-TSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCC
T ss_pred CCceEeeeec-CCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCC
Confidence 3447888887 999999999998763 444 34555665 23 3 35552 479999999
Q ss_pred CCCEEEEEEee
Q psy11302 64 LNDVIQLMIKA 74 (764)
Q Consensus 64 ~g~tI~Lvvr~ 74 (764)
+|++|-|+-+.
T Consensus 105 dgatl~l~~~~ 115 (117)
T 4e74_A 105 DGSVVALVSKQ 115 (117)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEeCC
Confidence 99999998653
No 294
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=79.95 E-value=1.8 Score=38.03 Aligned_cols=40 Identities=13% Similarity=-0.113 Sum_probs=34.7
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
-|.||+.|-|+. .|.|++|+|++|.... ....|+|-|.++
T Consensus 23 ~~~vG~kv~v~~--~~~~y~AkIl~ir~~~--------~~~~YyVHY~g~ 62 (92)
T 2ro0_A 23 DIIIKCQCWVQK--NDEERLAEILSINTRK--------APPKFYVHYVNY 62 (92)
T ss_dssp SCCTTCEEEEEE--TTEEEEEEEEEEECSS--------SSCEEEEEETTS
T ss_pred cccCCCEEEEEE--CCEEEEEEEEEEEEcC--------CCcEEEEEeCCc
Confidence 589999999996 7899999999998753 348899999988
No 295
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=79.70 E-value=5.6 Score=34.26 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=53.5
Q ss_pred EEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 16 LVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 16 ~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
.++- ..++..||..++.+.+++-+.--+...+.+|+++++|.|.+|+-.-.|++.+....
T Consensus 8 hmDI-~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik~ 67 (89)
T 2juo_A 8 AIDI-NEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVIS 67 (89)
T ss_dssp EEES-SSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEEC
T ss_pred hccc-cCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEEe
Confidence 3443 68899999999999999999999999999999999999999998889999987643
No 296
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.62 E-value=0.74 Score=38.89 Aligned_cols=56 Identities=25% Similarity=0.683 Sum_probs=34.0
Q ss_pred CCCCcCCcCCccCCCccCccCCCCCCCCC-cEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 302 ECTTCNDVETKHCKDCGCSICAGKTSPDK-LIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 302 ~C~~C~~~~~~~c~~c~C~vC~~~~~~~~-ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|+-|.+.-.. .|.+|......+. .+.--.|...||..|+..-|..-. .||.|+..
T Consensus 17 ~C~IC~~~~~~-----~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~CR~~ 73 (81)
T 2ecl_A 17 TCAICRVQVMD-----ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-----RCPLCQQD 73 (81)
T ss_dssp CBTTTTBCTTS-----CCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-----BCTTTCCB
T ss_pred CCcccChhhhc-----cCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-----CCCCcCCC
Confidence 45555553322 2444543222222 334447999999999987766533 89999954
No 297
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=79.61 E-value=1.7 Score=38.27 Aligned_cols=41 Identities=12% Similarity=-0.103 Sum_probs=35.1
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
.-|+||+.|-|+. .|.|++|+|++|.... ...-|+|=|.++
T Consensus 24 ~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~--------g~~~YYVHY~g~ 64 (94)
T 2rnz_A 24 DDIIIKCQCWVQK--NDEERLAEILSINTRK--------APPKFYVHYVNY 64 (94)
T ss_dssp GGCCTTEEEEEEC--SSCEEEEEEEEEECSS--------SSCEEEEECTTS
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcC--------CCcEEEEEeCCc
Confidence 3589999999985 7899999999998763 458899999988
No 298
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=79.60 E-value=1.1 Score=34.31 Aligned_cols=45 Identities=24% Similarity=0.560 Sum_probs=31.0
Q ss_pred cCccCCCCCCCC-CcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 318 GCSICAGKTSPD-KLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 318 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.+|...-..+ .......|...||..|+..-+.. ...||.|+..
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-----CCcCcCCCCE
Confidence 488887654433 33444469999999999876654 2479999843
No 299
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=78.93 E-value=4 Score=41.01 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=50.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcCCCCC-CeEEEE---C--CeeCCC-CcCccccCcCCCCEEEEEEeec
Q psy11302 13 NCVLVLSKRTLISDMKTQIENTLDVPVD-KQRLFY---K--GKQLED-EYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 13 ~~l~v~~~~~TV~~LK~~I~~~~gip~~-~QrLif---~--GK~L~D-~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
+++.++. .+||.+|++.+.+.++++++ +.||-. . ...|.| +.||.+++|.++..|.|=+|..
T Consensus 142 ~~~~~Sk-~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 142 VTRRFSK-ADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEECT-TSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred eEEEEcc-cchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4677775 99999999999999999997 688763 2 345665 5799999999999999988753
No 300
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=78.88 E-value=1.9 Score=40.41 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=36.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCC
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYK 179 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~ 179 (764)
.|.||+.|-|+.. -|.|++|+|+.|..... ....-|+|-|.++-
T Consensus 12 ~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~------~~~~~YyVHY~gwN 55 (133)
T 1wgs_A 12 TVEIGETYLCRRP-DSTWHSAEVIQSRVNDQ------EGREEFYVHYVGFN 55 (133)
T ss_dssp CCCTTSEEEEEET-TTEEEEEEEEEEEEETT------TTEEEEEEECTTTC
T ss_pred ccCCCCEEEEEeC-CCCEEEEEEEEEEeccC------CCceEEEEeccCcC
Confidence 5899999999984 58999999999987532 24588999998873
No 301
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=78.37 E-value=2.5 Score=34.75 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=42.1
Q ss_pred CccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 127 SQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 127 ~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
..-|++||.|=|+. +-|--++|.|++|.+.. -.|-|+|+ ++-..=+..++|++-|
T Consensus 11 ~~~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~----------gtC~V~F~---D~s~~w~~~kdi~~~~ 65 (66)
T 2eqj_A 11 ACKFEEGQDVLARW-SDGLFYLGTIKKINILK----------QSCFIIFE---DSSKSWVLWKDIQTGA 65 (66)
T ss_dssp CCCSCTTCEEEEEC-TTSCEEEEEEEEEETTT----------TEEEEEET---TTEEEEEETTTEECCC
T ss_pred cccccCCCEEEEEE-ccCcEEEeEEEEEccCC----------cEEEEEEc---cCCEEEEEeecccccC
Confidence 45799999999998 88999999999999863 35788876 4444555556665544
No 302
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.01 E-value=0.77 Score=38.69 Aligned_cols=45 Identities=29% Similarity=0.542 Sum_probs=33.2
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
|.+|...-.+ -+.|..|...||..|+..-|.+.. .=.||.|+.+-
T Consensus 18 C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w 62 (74)
T 2ct0_A 18 CNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNA---EPRCPHCNDYW 62 (74)
T ss_dssp CSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCS---SCCCTTTCSCC
T ss_pred CcchhhHccc--CCccCCCCchhhHHHHHHHHHhcC---CCCCCCCcCcC
Confidence 8888765443 357889999999999987776542 24899998543
No 303
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=74.56 E-value=3.3 Score=32.92 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=23.7
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQG 236 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (764)
++++|+.+|+=|.-| |-||.|.|+++..
T Consensus 3 ~~~~G~~c~A~~s~D-----g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED-----GCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTT-----SCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCC-----CCEEEEEEEEEcC
Confidence 578999999999644 7899999998854
No 304
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=73.96 E-value=3.2 Score=33.63 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQG 236 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (764)
+.++||.+|+=|- +-|-||.|.|+++..
T Consensus 8 ~~~vGd~c~A~~s-----~Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 8 SWKVGDKCMAVWS-----EDGQCYEAEIEEIDE 35 (64)
T ss_dssp CCCTTCEEEEECT-----TTSSEEEEEEEEEET
T ss_pred CCCCCCEEEEEEC-----CCCCEEEEEEEEEcC
Confidence 5789999999995 347899999999875
No 305
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=73.48 E-value=5 Score=34.57 Aligned_cols=46 Identities=11% Similarity=0.222 Sum_probs=39.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCe
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGK 49 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK 49 (764)
|.|+|..- -++.|.|.+ ..+..+|.++|.++.+++++...|.|.-.
T Consensus 6 ~~VKV~~~--~tvairvp~-~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQP-GLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECT-TCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCC-CCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 35566553 689999997 99999999999999999999999999764
No 306
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=72.59 E-value=4.6 Score=34.12 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=28.7
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecC
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGK 251 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~ 251 (764)
..++|+.|++=|.. -|-||.|.|+++.... ..+.-.|++.
T Consensus 9 ~~~~G~~c~A~~s~-----Dg~wYRA~I~~i~~~~---~~~~V~fiDY 48 (78)
T 2d9t_A 9 VWKPGDECFALYWE-----DNKFYRAEVEALHSSG---MTAVVKFTDY 48 (78)
T ss_dssp CCCTTCEEEEECTT-----TCCEEEEEEEEECSSS---SEEEEEETTT
T ss_pred CCCcCCEEEEEECC-----CCCEEEEEEEEEeCCC---CEEEEEEEcC
Confidence 47899999999974 3789999999986421 2233445664
No 307
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.37 E-value=0.52 Score=38.84 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=33.1
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-..+..+..-.|...||..|+..-+..- ..||.|+...
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~ 70 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADS 70 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcC
Confidence 488888654445555566799999999998655432 4899998543
No 308
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=72.00 E-value=1.1 Score=40.12 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=24.8
Q ss_pred cEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 331 LIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 331 ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.+.--.|...||..|+.+-|..- -.||.|+..
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~ 98 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNRE 98 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTC-----SBCSSSCSB
T ss_pred eEeecccCcEECHHHHHHHHHcC-----CcCcCCCCc
Confidence 34456899999999998776653 379999965
No 309
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.99 E-value=2 Score=35.37 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=30.9
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-.....+.--.|...||..|+..-+..- ..||.|+...
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 62 (78)
T 2ect_A 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-----DSCPVCRKSL 62 (78)
T ss_dssp CCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-----CSCTTTCCCC
T ss_pred CCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-----CcCcCcCCcc
Confidence 488887654433343334699999999997655432 4899999543
No 310
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=70.98 E-value=0.89 Score=41.66 Aligned_cols=28 Identities=29% Similarity=0.711 Sum_probs=0.0
Q ss_pred ecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 335 EECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 335 d~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
-.|...||..|+.+-|..-. .||.|+.+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~-----~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQ-----VCPLDNRE 109 (117)
T ss_dssp ---------------------------------
T ss_pred CCcCceEcHHHHHHHHHcCC-----cCCCCCCe
Confidence 47999999999998776533 79999854
No 311
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=70.14 E-value=11 Score=34.85 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=42.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhc----CCCCC----CeEEEE----CCeeCCC----------C----cCccccCcCC
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTL----DVPVD----KQRLFY----KGKQLED----------E----YMLFDYNVNL 64 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~----gip~~----~QrLif----~GK~L~D----------~----~tL~dy~I~~ 64 (764)
..+.+.|.. .+||.++|++|-..+ +.|-+ +..|=+ .|.+|.| + .||+.|+|.+
T Consensus 39 ~~v~VkVLd-CDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D 117 (126)
T 3kuz_A 39 RNISVNVLD-CDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN 117 (126)
T ss_dssp CEEEEEEET-TCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred CceEeeeec-CCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence 467888887 999999999997763 66543 344443 1234433 1 3678899999
Q ss_pred CCEEEEE
Q psy11302 65 NDVIQLM 71 (764)
Q Consensus 65 g~tI~Lv 71 (764)
|++|-|+
T Consensus 118 gatlal~ 124 (126)
T 3kuz_A 118 GSTIKVF 124 (126)
T ss_dssp TCEEEEE
T ss_pred CCEEEEe
Confidence 9999876
No 312
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=69.92 E-value=6.2 Score=38.75 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=61.7
Q ss_pred cccccceeeeeec---ccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCC-cccccccccccCccccc----c
Q psy11302 129 YYKVGDYVDAILE---TEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDG-SSTMKFDDIRPLPKHLI----T 200 (764)
Q Consensus 129 ~ykvg~~vD~~d~---~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~ir~ra~~~~----~ 200 (764)
.+++||.|=|+-. .-+.|+-|.|+++..+ ..-|.|.-.| +|.. ...++.++|-|-....- .
T Consensus 44 ~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~----------~~rYeV~D~d-~eg~~~~~~s~~~IIPLP~~~a~p~t~ 112 (180)
T 3mea_A 44 VARPGDKVAARVKAVDGDEQWILAEVVSYSHA----------TNKYEVDDID-EEGKERHTLSRRRVIPLPQWKANPETD 112 (180)
T ss_dssp CCCTTCEEEEEEECCC--EEEEEEEEEEEETT----------TTEEEEEECC-TTCCEEEEEEGGGEEECCSBBCCTTTC
T ss_pred ccCCCCEEEEEcCCCCCCccEEEEEEEEEcCC----------CCEEEEecCC-CCCceeEEeCHHHEEECCCcCCCcccC
Confidence 5788999998863 2378999999998643 2578887664 3322 47788888887764221 1
Q ss_pred cccccccccEEecccCCCCCccccceeeeeEeee
Q psy11302 201 EFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKK 234 (764)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (764)
++..+..|++||+=| |.-.- .|-|+|..-
T Consensus 113 ~~~~f~~G~~VLAlY----P~TT~-FY~A~V~~~ 141 (180)
T 3mea_A 113 PEALFQKEQLVLALY----PQTTC-FYRALIHAP 141 (180)
T ss_dssp GGGSCCTTCEEEEEC----TTSSE-EEEEEEEEC
T ss_pred ccccCCCCCEEEEeC----CCCce-eeEEEEecC
Confidence 366799999999988 33333 467777663
No 313
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=69.04 E-value=1.4 Score=35.42 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=32.3
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...-..+..+..-.|...||..|+..-+..- ..||.|+....
T Consensus 16 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 62 (69)
T 2kiz_A 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIE 62 (69)
T ss_dssp SBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSC
T ss_pred CCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCcccc
Confidence 488887554444445556799999999998655442 36999985543
No 314
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=71.29 E-value=1.1 Score=38.89 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=33.1
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
.|.||+.|-|.. -+.|++|+|++|.... ...-|.|-|.++
T Consensus 12 ~~~~Gekv~~~~--~~~~y~AkIl~i~~~~--------~~~~YyVHY~Gw 51 (85)
T 2lrq_A 12 LFVDGERVLCFH--GPLIYEAKVLKTKPDA--------TPVEYYIHYAGW 51 (85)
Confidence 689999999998 4689999999998752 346788988876
No 315
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=67.54 E-value=21 Score=30.38 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=45.4
Q ss_pred CEEEEEeCC------CCEEEEEEcCCCCcHHHHHHHHHhhcC------CC-------CCCeEEEECCeeCCCCcCccccC
Q psy11302 1 MYVKIRSLD------GSKNCVLVLSKRTLISDMKTQIENTLD------VP-------VDKQRLFYKGKQLEDEYMLFDYN 61 (764)
Q Consensus 1 MqI~VKtl~------Gk~~~l~v~~~~~TV~~LK~~I~~~~g------ip-------~~~QrLif~GK~L~D~~tL~dy~ 61 (764)
|+|+|+.+- |....+++. ..||.+|.+.+...+. .. .....+.-+|+...+..-+ +.-
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~--~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~ 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS--GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATA 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC--CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCB
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC--CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcC
Confidence 788888752 433356654 5899999999998753 01 1135677788887642222 345
Q ss_pred cCCCCEEEEEE
Q psy11302 62 VNLNDVIQLMI 72 (764)
Q Consensus 62 I~~g~tI~Lvv 72 (764)
|++||.|.++-
T Consensus 78 L~~gDeV~i~P 88 (93)
T 3dwg_C 78 IADGDSVTILP 88 (93)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 88999998874
No 316
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=66.66 E-value=2.7 Score=40.53 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=41.3
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHL 198 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~ 198 (764)
..++|+++=|+-..-|.|+-|+|++|... -.+.|.|-||..... ..+|||-....
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~-----------~~~~V~fvDyGn~~~----v~~lr~l~~~f 101 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDD-----------GKCEVHFIDFGNNAV----TQQFRQLPEEL 101 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECST-----------TCEEEEETTTTEEEE----ESCEECCCHHH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCC-----------CEEEEEEEecCCeEE----hhhhhccCHHH
Confidence 56899999999877899999999998653 146788888865544 35777655443
No 317
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=66.49 E-value=1 Score=38.79 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=32.3
Q ss_pred ccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
..|.+|...-..+..+..-.|...||..|+..-|..- -.||.|+...
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~ 87 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-----GTCPVCRCMF 87 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-----CBCTTTCCBS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-----CcCcCcCccC
Confidence 3488887544444445445699999999998765432 3899998543
No 318
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=65.06 E-value=19 Score=37.18 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEEE---CCe--eCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLFY---KGK--QLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLif---~GK--~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|.|.|..+|| +..+.+++ .+|+.+|-+.|.+..|+.... -=|.| .|. -|+.+.+|.+.++..+....|..|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~-~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQP-NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECT-TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECC-CCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 5789999998 67899998 999999999999999976543 34555 233 4677888888776666666666554
Q ss_pred c
Q psy11302 75 D 75 (764)
Q Consensus 75 ~ 75 (764)
.
T Consensus 80 k 80 (294)
T 1ef1_A 80 K 80 (294)
T ss_dssp S
T ss_pred E
Confidence 3
No 319
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=64.25 E-value=21 Score=37.26 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=54.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEEE--CCe--eCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLFY--KGK--QLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLif--~GK--~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|.+.|..+|| ++.+.+++ ++|+.+|-+.|.+..|+...+ --|.| .|. -|+.+.+|.+..+..+..+.|..|.
T Consensus 23 ~~~~V~lldg-~~~~~v~~-~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEM-KWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEECSSC-EEEEEEET-TCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCC-CCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 4678999999 78899998 999999999999999976432 34555 343 3777888988876666666566554
No 320
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.09 E-value=1.3 Score=36.23 Aligned_cols=48 Identities=27% Similarity=0.500 Sum_probs=31.9
Q ss_pred ccCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
..|.+|...-.....+.--.|...||..|+..-+..- -.||.|+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 3488887654433333333699999999998655432 27999996543
No 321
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=63.88 E-value=2 Score=32.68 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=31.6
Q ss_pred cCccCCCCC-CCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 318 GCSICAGKT-SPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 318 ~C~vC~~~~-~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.+|...- +.+..+..-.|...||..|+..-+..- ..||.|+..
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~ 52 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGP 52 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCc
Confidence 488887653 233456667899999999997554432 589999854
No 322
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.73 E-value=5.4 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.5
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQG 236 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (764)
.++|||.||+-|- | |-||.+.|+++..
T Consensus 9 ~~kvGd~clA~ws-D-----g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 9 DFKAGEEVLARWT-D-----CRYYPAKIEAINK 35 (74)
T ss_dssp CCCTTCEEEEECS-S-----SSEEEEEEEEEST
T ss_pred CCCCCCEEEEECC-C-----CCEEEEEEEEECC
Confidence 4789999999996 4 7899999999864
No 323
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.16 E-value=6.3 Score=34.22 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=30.7
Q ss_pred cccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 203 NENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
.++.+|.+|++-+-. ..+-|-||.|+|.+++......+-|. =+.|
T Consensus 8 ~~~~vG~kv~v~~~~--~~~~~~~y~AkIl~i~~~~~~~~YyV-HY~g 52 (87)
T 2eko_A 8 GEIIEGCRLPVLRRN--QDNEDEWPLAEILSVKDISGRKLFYV-HYID 52 (87)
T ss_dssp CSCCTTCEEEBCEEC--TTCCEECCEEEEEEECCSSSCCCEEE-EECS
T ss_pred ccccCCCEEEEEEcc--cCCCCeEEEEEEEEEEEcCCCcEEEE-EeCC
Confidence 468899999998822 33467899999999887544333332 2445
No 324
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=62.61 E-value=7 Score=30.34 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=21.9
Q ss_pred cccccEEecccCCCCCccccceeeeeEeeeccc
Q psy11302 205 NLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGK 237 (764)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (764)
.++|+.+++=|- +-|-||.|.|+++...
T Consensus 2 wk~G~~c~A~~s-----~Dg~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYW-----EDNKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEET-----TTTEEEEEEEEEC--C
T ss_pred CCCCCEEEEEEC-----CCCCEEEEEEEEEeCC
Confidence 479999999994 3468999999998653
No 325
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=62.46 E-value=4.8 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEEC
Q psy11302 13 NCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYK 47 (764)
Q Consensus 13 ~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~ 47 (764)
..+.|.. ++|+.+|+..|++.+|+|+++|||-.=
T Consensus 58 ~~~rv~k-~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLK-NSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCT-TSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEec-cCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 3567664 999999999999999999999998753
No 326
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=62.34 E-value=14 Score=31.86 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=40.6
Q ss_pred CCCEEEEEEcCCC-CcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEe
Q psy11302 9 DGSKNCVLVLSKR-TLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIK 73 (764)
Q Consensus 9 ~Gk~~~l~v~~~~-~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr 73 (764)
+|+.+.+ .. . .||.+|.+.+ ++++....+..+|..+..+. ..+.-|++||.|.++--
T Consensus 26 NGe~~el--~~-~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~-~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKDVKW--KK-DTGTIQDLLASY----QLENKIVIVERNKEIIGKER-YHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEEECC--SS-SCCBHHHHHHHT----TCTTSCCEEEETTEEECGGG-TTTSBCCSSSEEEEEEE
T ss_pred CCEEEEC--CC-CCCcHHHHHHHh----CCCCCCEEEEECCEECChhh-cCCcCCCCCCEEEEEcc
Confidence 5665543 33 4 7999998876 57777778889999986432 23445899999998853
No 327
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=61.90 E-value=11 Score=33.19 Aligned_cols=33 Identities=6% Similarity=-0.062 Sum_probs=26.3
Q ss_pred cccccccccEEecccCCCCCccccceeeeeEeeecccccc
Q psy11302 201 EFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLT 240 (764)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 240 (764)
.=..+.+|.+|++-. .|-||.|+|.+++.....
T Consensus 22 ~~~~~~vG~kv~v~~-------~~~~yeAeIl~ir~~~g~ 54 (94)
T 2rnz_A 22 SVDDIIIKCQCWVQK-------NDEERLAEILSINTRKAP 54 (94)
T ss_dssp CGGGCCTTEEEEEEC-------SSCEEEEEEEEEECSSSS
T ss_pred ccccccCCCEEEEEE-------CCEEEEEEEEEEEEcCCC
Confidence 335689999999985 478999999998875443
No 328
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.37 E-value=2.3 Score=36.11 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=31.9
Q ss_pred ccCccCCCCCCCCCcEEEecCC-----CcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 317 CGCSICAGKTSPDKLIVCEECQ-----HYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 317 c~C~vC~~~~~~~~ll~Cd~C~-----~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
..|.+|....+.+..|. --|. +.||..||..-|.. .+...||.|+....
T Consensus 16 ~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~---~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 16 DICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKS---SDTRCCELCKYEFI 69 (80)
T ss_dssp CCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHH---HCCSBCSSSCCBCC
T ss_pred CCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHHHHHhh---CCCCCCCCCCCeee
Confidence 34888876544333332 3343 89999999876653 23569999996543
No 329
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=60.80 E-value=29 Score=29.25 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=42.2
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
-|.+||-|=||. +-|-.+-+.|++|.... --|.|+|+ |+...=+..++|.+-|
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~----------e~ClV~F~---D~S~~W~~~kdi~~~~ 78 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAR----------EVCLVQFE---DDSQFLVLWKDISPAA 78 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTT----------TEEEEEET---TSCEEEEETTTBCCCC
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCC----------CEEEEEEc---CCCeEEEEeecccccc
Confidence 689999999998 88999999999998874 46889977 5566666667776654
No 330
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.52 E-value=5.1 Score=34.20 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=29.1
Q ss_pred hcccccccccccccCceecC----CCCcchHhHHHHHHhhc
Q psy11302 686 QEKFLCIICQELVYKPITLD----CVHTFCHDCLKRAFKIE 722 (764)
Q Consensus 686 ~e~~~C~IC~e~l~~Pvtt~----CgH~FC~~CL~~~~~~~ 722 (764)
...+.|.+|++-+.+--... =.|.||..|-...++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 35688999999988754433 46999999999888764
No 331
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.41 E-value=1.7 Score=38.56 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=25.7
Q ss_pred cEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 331 LIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 331 ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.+..-.|...||..|+..-|..-.....-.||.|+....
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 333557999999999987663211123458999995443
No 332
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=60.20 E-value=8.3 Score=32.51 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=28.8
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecC
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGK 251 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~ 251 (764)
++++|+.+++=|-- -|-||.|.|+++..... .+.-.|++.
T Consensus 17 ~~kvGd~C~A~ys~-----Dg~wYRA~I~~i~~~~~---~~~V~fvDY 56 (77)
T 3pnw_C 17 MWKPGDECFALYWE-----DNKFYRAEVEALHSSGM---TAVVKFIDY 56 (77)
T ss_dssp TCCTTCEEEEEETT-----TTEEEEEEEEEECTTSS---EEEEEETTT
T ss_pred CCCcCCEEEEEECC-----CCCEEEEEEEEEeCCCC---EEEEEEEcC
Confidence 47899999999943 47899999999875422 223346664
No 333
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=60.11 E-value=8.9 Score=33.28 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=29.4
Q ss_pred cccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecC
Q psy11302 203 NENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGK 251 (764)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~ 251 (764)
..++|||.+|+=|. +-|-||.|.|+.+.... .-+.-.|++.
T Consensus 9 ~~~kvGd~C~A~ys-----~Dg~wYrA~I~~i~~~~---~~~~V~fiDY 49 (88)
T 1g5v_A 9 QQWKVGDKCSAIWS-----EDGCIYPATIASIDFKR---ETCVVVYTGY 49 (88)
T ss_dssp CCCCSSCEEEEECT-----TTCCEEEEEEEEEETTT---TEEEEEETTT
T ss_pred CCCCCCCEEEEEEC-----CCCCEEEEEEEEecCCC---CEEEEEEecC
Confidence 35789999999996 34789999999986531 1233445654
No 334
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=59.13 E-value=60 Score=27.18 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=40.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcC-C-----CC-----CCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTLD-V-----PV-----DKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~g-i-----p~-----~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
....+++.. ..||.+|.+.+..... + .. ....+.-+|+.... ++-|++||.|.++-
T Consensus 18 ~~~~~~~~~-~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDG-DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCT-TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCC-CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 567788765 6899999999988753 1 11 23578889998875 34478899998873
No 335
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.17 E-value=9.9 Score=33.28 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=26.3
Q ss_pred ccccccccEEecccCCCCCccccceeeeeEeeecccccce
Q psy11302 202 FNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTT 241 (764)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 241 (764)
=..+.+|.+|++-+ .|-||.|+|.+++......
T Consensus 21 ~~~~~vG~kv~v~~-------~~~~y~AkIl~ir~~~~~~ 53 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK-------NDEERLAEILSINTRKAPP 53 (92)
T ss_dssp TTSCCTTCEEEEEE-------TTEEEEEEEEEEECSSSSC
T ss_pred cccccCCCEEEEEE-------CCEEEEEEEEEEEEcCCCc
Confidence 35689999999986 4789999999988754433
No 336
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=57.05 E-value=32 Score=39.70 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=45.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhc--CCC------CCCeEEEE----CCe-eCCCC-------------cCccccCcC
Q psy11302 10 GSKNCVLVLSKRTLISDMKTQIENTL--DVP------VDKQRLFY----KGK-QLEDE-------------YMLFDYNVN 63 (764)
Q Consensus 10 Gk~~~l~v~~~~~TV~~LK~~I~~~~--gip------~~~QrLif----~GK-~L~D~-------------~tL~dy~I~ 63 (764)
...+.+.|.. .+||.++|++|-... |+| +++.-|=+ .|+ +|.|. .||+.|+|.
T Consensus 246 ~~~i~vkVLd-CDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 324 (627)
T 3ig3_A 246 SAQVPVKVLN-CDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVT 324 (627)
T ss_dssp -CEEEEEEET-TCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CCceeeEeec-cCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCC
Confidence 3567888887 999999999998763 443 45555654 233 45542 379999999
Q ss_pred CCCEEEEEEee
Q psy11302 64 LNDVIQLMIKA 74 (764)
Q Consensus 64 ~g~tI~Lvvr~ 74 (764)
+|++|.|+-+.
T Consensus 325 Dga~v~L~p~~ 335 (627)
T 3ig3_A 325 DGSLVALVPKQ 335 (627)
T ss_dssp TTCEEEEEEC-
T ss_pred CCceEEEEecc
Confidence 99999987654
No 337
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=56.94 E-value=27 Score=37.47 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=55.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC-CCeEEEECC---------eeCCCCcCccccCcCCCCEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPV-DKQRLFYKG---------KQLEDEYMLFDYNVNLNDVIQL 70 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~-~~QrLif~G---------K~L~D~~tL~dy~I~~g~tI~L 70 (764)
+.+.|..++|....+.+++ .+|+.+|-+.|++..|+.. +..-|++.. .-|+.+++|.+.++....++++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~-~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDD-SKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEEECTTSCEEEEEEET-TSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred eEEEEECcCCCEEEEEECC-CCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 4688999999999999998 9999999999999999653 334565532 3445567777777766677777
Q ss_pred EEee
Q psy11302 71 MIKA 74 (764)
Q Consensus 71 vvr~ 74 (764)
.++.
T Consensus 165 rvKf 168 (371)
T 3ivf_A 165 RRKF 168 (371)
T ss_dssp EECC
T ss_pred EEEE
Confidence 6654
No 338
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=56.45 E-value=25 Score=36.58 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=53.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEEECC-----eeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLFYKG-----KQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLif~G-----K~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|.+.|..+||....+.+++ .+|+.+|-+.|.+..|+.... .-|.|.. .-|+.+++|.+......-++.+.++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~-~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvkf 96 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEK-HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKF 96 (296)
T ss_dssp CEEEEECTTSCEEEEECCT-TCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEESS
T ss_pred EEEEEEccCCCEEEEEECC-CCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEEE
Confidence 5789999999999999998 999999999999999976433 4566532 34677777777654444456665553
No 339
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=55.66 E-value=8.4 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=27.1
Q ss_pred cccccccccEEecccCCCCCccccceeeeeEeeecccc
Q psy11302 201 EFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKR 238 (764)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 238 (764)
.++.+.+|.+|++-+-. ...|-||.|+|.+++...
T Consensus 2 e~~~~~vGekV~~~~~d---~k~~~~y~AkIl~i~~~~ 36 (76)
T 2lcc_A 2 DMEPCLTGTKVKVKYGR---GKTQKIYEASIKSTEIDD 36 (76)
T ss_dssp CCCCSSTTCEEEEEEEE---TTEEEEEEEEEEEEEEET
T ss_pred cccccCCCCEEEEEeCC---CCCCCEEEEEEEEEEccC
Confidence 46789999999998741 334689999999977643
No 340
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=60.35 E-value=2.5 Score=38.41 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=35.3
Q ss_pred CccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 127 SQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 127 ~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
.|-.++|.-|.++-.. +.|.||.|.+|+-. .+|+|.|||-
T Consensus 54 kG~l~vG~~ve~~~~~-~~~~~~~I~~i~D~-----------S~YtVVFdDG 93 (118)
T 2lcd_A 54 KGPLRVGAIVETRTSD-GSFQEAIISKLTDA-----------SWYTVVFDDG 93 (118)
Confidence 7888999999999864 79999999999876 7999999854
No 341
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=54.17 E-value=64 Score=29.01 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=42.1
Q ss_pred CEEEEEeCC------C--CEEEEEEcC--CCCcHHHHHHHHHhhcCCCCCCeEEEEC-Ce------eCCCCc---Cc--c
Q psy11302 1 MYVKIRSLD------G--SKNCVLVLS--KRTLISDMKTQIENTLDVPVDKQRLFYK-GK------QLEDEY---ML--F 58 (764)
Q Consensus 1 MqI~VKtl~------G--k~~~l~v~~--~~~TV~~LK~~I~~~~gip~~~QrLif~-GK------~L~D~~---tL--~ 58 (764)
|+|+|+.+. | +.+.+++.. ...||.+|.+.|.+.+ |....+||.. |+ +|-++. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678888752 3 356788773 1369999999999876 1112222211 21 222222 11 3
Q ss_pred ccCcCCCCEEEEEEee
Q psy11302 59 DYNVNLNDVIQLMIKA 74 (764)
Q Consensus 59 dy~I~~g~tI~Lvvr~ 74 (764)
++-+++||.|.++-..
T Consensus 90 dt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 90 DYQLQDQDSILFISTL 105 (114)
T ss_dssp TCBCCSSEEEEEEECS
T ss_pred CcCCCCCCEEEEeCCC
Confidence 5668999998886433
No 342
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=53.86 E-value=16 Score=30.39 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+| +|+.+.+ . ..||.+|.+. .++++...-+..+|.++..+ ...+.-+++||.|.++--..+
T Consensus 1 M~I~v---NG~~~e~--~--~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgG 64 (73)
T 2kl0_A 1 MLVTI---NGEQREV--Q--SASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQG 64 (73)
T ss_dssp CCEEE---TTEEECC--C--CSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCC
T ss_pred CEEEE---CCEEEEc--C--CCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccC
Confidence 55554 5766554 3 5899998774 57888888899999998643 233445889999999864433
No 343
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=53.63 E-value=5.2 Score=35.19 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=37.7
Q ss_pred hhcccccccccccccCceecCCC-CcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 685 IQEKFLCIICQELVYKPITLDCV-HTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvtt~Cg-H~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+.--+.|..|--.... .+.|. |-+|..||...++...+ ||.|.+.+..+
T Consensus 25 ~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~Sdr----CpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNR----CPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSE----ETTTTEECCCC
T ss_pred ccCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccC----CcccCCcCCcc
Confidence 3456779888765543 33455 99999999999988776 99999999875
No 344
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.44 E-value=22 Score=28.62 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=41.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|.|+|...+|+...+ .. ..|+.+|-..|....+ ..-.-...+|+..+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~~~~--~~-g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEIKRL--PQ-GATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCEEEE--CT-TCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCEEEc--CC-CCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 889998888987544 44 6999999888743221 1122234688877654 3456788888875
No 345
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.40 E-value=19 Score=28.89 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=42.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
|+|+| +|+.+.+ .. ..||.+|.+.+ ++++....+..+|..+.... ..+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~~~--~~-~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAMQC--AA-GQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEECC--CT-TCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEEEc--CC-CCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEEe
Confidence 55544 5666544 33 68999999887 56677778889999886421 1233478899998874
No 346
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=52.33 E-value=17 Score=41.89 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=45.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhh--cCCCC------CCeEEEE----CCe-eCCCC-------------cCccccCcCC
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENT--LDVPV------DKQRLFY----KGK-QLEDE-------------YMLFDYNVNL 64 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~--~gip~------~~QrLif----~GK-~L~D~-------------~tL~dy~I~~ 64 (764)
..+.+.|.. .+||.++|++|-.. .|+|- ++.-|=+ .|+ +|.|. .||+.|+|.+
T Consensus 274 ~~i~VkVLd-CDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLD-CDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEET-TSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeec-cCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 447888887 99999999999865 24443 4455555 233 46653 3899999999
Q ss_pred CCEEEEEEee
Q psy11302 65 NDVIQLMIKA 74 (764)
Q Consensus 65 g~tI~Lvvr~ 74 (764)
|++|.|+-+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999887543
No 347
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=52.26 E-value=2.3 Score=38.33 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=25.1
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCK 365 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~ 365 (764)
|.+|++.+ |+.|+..||++|+.+| .|.|..|.
T Consensus 10 C~~C~~~~-------C~~C~~c~~~~~~~~~--------~~~~~~c~ 41 (117)
T 4bbq_A 10 CKACVQGE-------CGVCHYCRDMKKFGGP--------GRMKQSCV 41 (117)
T ss_dssp SHHHHSCC-------CSCSHHHHHSGGGTSC--------CCSCCCCG
T ss_pred CcCcCCcC-------CCCCCCCcCCcccCCC--------Cccccchh
Confidence 77888642 9999999999999865 37777775
No 348
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=51.37 E-value=11 Score=31.04 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=29.0
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
..++|+.||+=| ..|-||.+.|+.+.... .|.-.|-+
T Consensus 6 ~~~vGd~vmArW------~D~~yYpA~I~si~~~~----~Y~V~F~d 42 (67)
T 3p8d_A 6 EFQINEQVLACW------SDCRFYPAKVTAVNKDG----TYTVKFYD 42 (67)
T ss_dssp CCCTTCEEEEEC------TTSCEEEEEEEEECTTS----EEEEEETT
T ss_pred ccccCCEEEEEc------CCCCEeeEEEEEECCCC----eEEEEEeC
Confidence 468999999999 56789999999988763 25555655
No 349
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.41 E-value=16 Score=31.75 Aligned_cols=48 Identities=19% Similarity=0.555 Sum_probs=36.2
Q ss_pred ccccccccccccC-----cee--cCCCCcchHhHHHHHHhhcCCCcCCCccccccccc
Q psy11302 688 KFLCIICQELVYK-----PIT--LDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNK 738 (764)
Q Consensus 688 ~~~C~IC~e~l~~-----Pvt--t~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~ 738 (764)
.-.|.||-+.+-- +.. -.|+-..|+.|++--.+..... ||.|.+.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~---CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQN---CPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSS---CTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCcc---ccccCCcccc
Confidence 3579999986331 222 3788889999999888877766 9999988853
No 350
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=49.38 E-value=61 Score=27.99 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=40.4
Q ss_pred CEEEEEeC------C-C-CEEEEEEc--CCCCcHHHHHHHHHhhcCCC-C--------C----CeEEEECCeeCCCCcCc
Q psy11302 1 MYVKIRSL------D-G-SKNCVLVL--SKRTLISDMKTQIENTLDVP-V--------D----KQRLFYKGKQLEDEYML 57 (764)
Q Consensus 1 MqI~VKtl------~-G-k~~~l~v~--~~~~TV~~LK~~I~~~~gip-~--------~----~QrLif~GK~L~D~~tL 57 (764)
|+|+|+.+ - | +...+++. . ..||.+|.+.|.+...-. + . ...+.-+|.-.. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~-~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~ 77 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKED-PVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LE 77 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCS-CCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCC-CCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---cc
Confidence 57888764 2 3 44567765 4 689999999998876311 1 1 012334444221 11
Q ss_pred --cccCcCCCCEEEEE
Q psy11302 58 --FDYNVNLNDVIQLM 71 (764)
Q Consensus 58 --~dy~I~~g~tI~Lv 71 (764)
.++-|++||.|.++
T Consensus 78 ~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 78 GEKDYILEDGDIISFT 93 (99)
T ss_dssp TGGGCBCCTTCEEEEE
T ss_pred CCCCcCcCCCCEEEEE
Confidence 24558899998886
No 351
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=49.25 E-value=62 Score=27.96 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=32.6
Q ss_pred EEEEEeCCCCEE-EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEE
Q psy11302 2 YVKIRSLDGSKN-CVLVLSKRTLISDMKTQIENTLDVPVDKQRL 44 (764)
Q Consensus 2 qI~VKtl~Gk~~-~l~v~~~~~TV~~LK~~I~~~~gip~~~QrL 44 (764)
.|+.|.-..+.+ +|.++....+|.+||++|..+.++-....-|
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 467777766555 8888877899999999999988775444443
No 352
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=47.63 E-value=1.4 Score=35.35 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=31.0
Q ss_pred cCccCCCCCCCCCcEEEecCC---CcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQ---HYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~---~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|....++..++-| .|. +.+|..||..-+.. .+.+.|+.|....
T Consensus 8 ~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~---~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 8 VCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI---SRNTACQICGVVY 57 (60)
T ss_dssp EETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH---HTCSBCTTTCCBC
T ss_pred EeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh---CCCCccCCCCCee
Confidence 48888765443333333 444 49999999876653 3568999998543
No 353
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=47.63 E-value=42 Score=38.51 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=55.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCC-CeEEEECC-----eeCCCCcCccccCcCCCCEEEEEEee
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVD-KQRLFYKG-----KQLEDEYMLFDYNVNLNDVIQLMIKA 74 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~-~QrLif~G-----K~L~D~~tL~dy~I~~g~tI~Lvvr~ 74 (764)
|.|.|..+|| ++.|.+++ ++|+.+|-..|....|+... -.-|+|.. ..|+.+.+|.+.++..+..+.|.+|.
T Consensus 5 i~v~V~llDg-t~e~~vd~-~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQ-TTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEECSSC-EEEEEEET-TCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECC-CCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 4688999998 67899998 99999999999999997643 34566632 35677788888777666666666665
Q ss_pred cC
Q psy11302 75 DI 76 (764)
Q Consensus 75 ~~ 76 (764)
.-
T Consensus 83 kf 84 (575)
T 2i1j_A 83 KF 84 (575)
T ss_dssp SS
T ss_pred EE
Confidence 43
No 354
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=46.79 E-value=4.3 Score=28.55 Aligned_cols=12 Identities=25% Similarity=0.985 Sum_probs=9.8
Q ss_pred CCCCCCCccCcC
Q psy11302 355 EDDEWFCPSCKR 366 (764)
Q Consensus 355 ~~g~W~C~~C~~ 366 (764)
..|+|.|+.|..
T Consensus 2 k~gDW~C~~C~~ 13 (32)
T 2lk0_A 2 KFEDWLCNKCCL 13 (32)
T ss_dssp CCSEEECTTTCC
T ss_pred CCCCCCcCcCcC
Confidence 469999999963
No 355
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=46.55 E-value=25 Score=29.51 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCC-CCCeEEEECCeeCCCCcCccccCcCCCCEEEEEEeecC
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVP-VDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMIKADI 76 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip-~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~~ 76 (764)
|+|+| +|+.+.+.... ..||.+|.+.+ +++ +...-+..+|.++.-+ ...++-+++||.|.++--..+
T Consensus 1 M~I~v---NGe~~e~~~~~-~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgG 68 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAE-SLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGG 68 (78)
T ss_dssp CEEEE---TTEEEECSSCS-CEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCC
T ss_pred CEEEE---CCEEEEcCCCC-CCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecC
Confidence 66655 46655432103 58999998765 677 7777789999999654 233445789999998854433
No 356
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=46.09 E-value=25 Score=35.37 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=41.0
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
..++|+++=|+-. -|.|+-|+|++|... -.+.|.|-||..... ++..+|||-...
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~-----------~~~~V~~vDyGn~~~--v~~~~lr~l~~~ 119 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESP-----------AKIHVFYIDYGNREV--LPSTRLGTLSPA 119 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET-----------TEEEEEETTTCCEEE--ECGGGEECCCGG
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCC-----------CeEEEEEEeCCCeEE--EeHHHhhcCCHh
Confidence 4579999999976 699999999999653 257888887855544 456677766543
No 357
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=45.00 E-value=16 Score=31.61 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=29.0
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
..+||+.||+=| ..|-||.|.|+.+....+ |.-.|-+
T Consensus 21 ~f~vGd~VlArW------~D~~yYPAkI~sV~~~~~----YtV~F~D 57 (85)
T 3qii_A 21 EFQINEQVLACW------SDCRFYPAKVTAVNKDGT----YTVKFYD 57 (85)
T ss_dssp CCCTTCEEEEEC------TTSCEEEEEEEEECTTSE----EEEEETT
T ss_pred ccccCCEEEEEe------CCCCEeeEEEEEECCCCe----EEEEEeC
Confidence 478999999999 457799999999988743 5555555
No 358
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=44.50 E-value=22 Score=31.74 Aligned_cols=28 Identities=18% Similarity=-0.078 Sum_probs=23.2
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKR 238 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 238 (764)
.+.+|++|++=+ .|.||+|+|.+++...
T Consensus 22 ~f~vGekVl~~~-------~~~~YeAkIl~v~~~~ 49 (102)
T 2f5k_A 22 KFQEGERVLCFH-------GPLLYEAKCVKVAIKD 49 (102)
T ss_dssp SCCTTCEEEEES-------SSSEEEEEEEEEEEET
T ss_pred ccCCCCEEEEEE-------CCEEEEEEEEEEEEcC
Confidence 478999999976 3789999999988643
No 359
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=43.89 E-value=18 Score=35.53 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=40.1
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKH 197 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~ 197 (764)
.++|++|=|+-..-|.|+-|+|++|.. -.+.|.|-||..... ++..++||-...
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~------------~~~~V~~vDyG~~~~--v~~~~l~~l~~~ 105 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQG------------SNATVLYIDYGNKET--LPTNRLAALPPA 105 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEET------------TEEEEEETTTCCEEE--EEGGGEEECCGG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecC------------CeEEEEEEecCCeEE--EchHHcccCChh
Confidence 579999999987779999999999854 246788877755444 455677765543
No 360
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=43.85 E-value=47 Score=27.20 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcC-----CCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 12 KNCVLVLSKRTLISDMKTQIENTLD-----VPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 12 ~~~l~v~~~~~TV~~LK~~I~~~~g-----ip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
...++ .. ..||.+|.+.+..... ++.....+..+|+.... +.-+++||.|.++
T Consensus 18 ~~~~~-~~-~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-AD-FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SC-CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CC-CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 44555 33 6899999999986532 23344578889998864 3457889999886
No 361
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=43.83 E-value=74 Score=31.90 Aligned_cols=96 Identities=18% Similarity=0.297 Sum_probs=63.1
Q ss_pred cCCccccccceeeeeeccc-CcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccccccc
Q psy11302 125 ADSQYYKVGDYVDAILETE-GAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLITEFN 203 (764)
Q Consensus 125 ~~~g~ykvg~~vD~~d~~~-gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~~~~~ 203 (764)
|-.+-+-||--|=|+-.+. ..||.|=|+--.....+ .-=|.|-|| +.-...+...+||+-.+..-.-|+
T Consensus 64 p~~~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N-------~~RyLVFFD---DG~~~Yv~~~~V~~Vc~~s~~vW~ 133 (213)
T 3dlm_A 64 PPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKN-------KLRFLIFFD---DGYASYVTQSELYPICRPLKKTWE 133 (213)
T ss_dssp CCGGGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTT-------TSCEEEEET---TSCEEEECGGGEEEBSSCCSSGGG
T ss_pred CCccEEeEEEEEEEEecCCCCcceeeeEEEECCccCC-------CceEEEEEe---CCCcceecCceEEEEEEcccchhh
Confidence 3345566777776665543 36888888766655442 245778765 222355666777766655544444
Q ss_pred c------------------------cccccEEecccCCCCCccccceeeeeEeeeccc
Q psy11302 204 E------------------------NLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGK 237 (764)
Q Consensus 204 ~------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (764)
+ |++||.|++-.| |.|+++.|...+-+
T Consensus 134 di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~-------g~w~~~~V~~vD~S 184 (213)
T 3dlm_A 134 DIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWE-------GTWWKSRVEEVDGS 184 (213)
T ss_dssp GCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEET-------TEEEEEEEEEEETT
T ss_pred hcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEec-------CcEEEEEEEEEcce
Confidence 4 568999999555 99999999988753
No 362
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=43.68 E-value=44 Score=35.51 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECC-eeCCC-CcCcccc
Q psy11302 10 GSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKG-KQLED-EYMLFDY 60 (764)
Q Consensus 10 Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~G-K~L~D-~~tL~dy 60 (764)
-....+.+.+ ..|+.+|+++|+++.+++++.|.|+|.+ ...-+ ......|
T Consensus 321 ~~~~~~~~~~-~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 321 MTAHKIYIHS-YNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TEEEEEEECT-TCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred ceEEEEEcCc-hhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 3445778786 9999999999999999999999999998 44333 3344444
No 363
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.45 E-value=58 Score=28.22 Aligned_cols=46 Identities=4% Similarity=0.120 Sum_probs=36.3
Q ss_pred EEEEe-CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCC-eEEEECCe
Q psy11302 3 VKIRS-LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDK-QRLFYKGK 49 (764)
Q Consensus 3 I~VKt-l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~-QrLif~GK 49 (764)
|+||. ..|..+.+.+.+ +.+..+|.++|.+.++++..+ ..|-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~-~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEP-SISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECT-TCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 44554 357888999997 999999999999999988655 56667544
No 364
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=49.12 E-value=5.1 Score=34.37 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=23.4
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeeccc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGK 237 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (764)
++++||.||+-|. | |-||.+.|+.+...
T Consensus 6 ~~kvGd~clAkws-D-----g~wY~A~I~~v~~~ 33 (81)
T 2ldm_A 6 EFQINEQVLASWS-D-----SRFYPAKVTAVNKD 33 (81)
Confidence 4789999999887 4 57999999998653
No 365
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.71 E-value=5.3 Score=32.30 Aligned_cols=43 Identities=21% Similarity=0.504 Sum_probs=28.0
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-.. .+.. .|...||..|+..-+..- ..||.|+...
T Consensus 17 ~C~IC~~~~~~--~~~~-~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~ 59 (71)
T 2d8t_A 17 ECAICLQTCVH--PVSL-PCKHVFCYLCVKGASWLG-----KRCALCRQEI 59 (71)
T ss_dssp BCSSSSSBCSS--EEEE-TTTEEEEHHHHHHCTTCS-----SBCSSSCCBC
T ss_pred CCccCCcccCC--CEEc-cCCCHHHHHHHHHHHHCC-----CcCcCcCchh
Confidence 37777744222 2222 699999999987554432 5899999544
No 366
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=42.20 E-value=8.5 Score=33.23 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=23.3
Q ss_pred CccCccCCCCCCCCCcEEEec--CCCcccccccC
Q psy11302 316 DCGCSICAGKTSPDKLIVCEE--CQHYYHIWCLK 347 (764)
Q Consensus 316 ~c~C~vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~ 347 (764)
.-.|.+|++. ..+..+.|.. |..+||..|-.
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHH
Confidence 4458889754 2467888975 99999999953
No 367
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.89 E-value=9 Score=29.18 Aligned_cols=42 Identities=29% Similarity=0.733 Sum_probs=27.1
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSC 364 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C 364 (764)
.|.+|...-....++ .|...||..|+..-+..+ ...-.||.|
T Consensus 17 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~--~~~~~CP~C 58 (58)
T 2ecj_A 17 SCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL--ERDFPCPVC 58 (58)
T ss_dssp BCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS--CCSCCCSCC
T ss_pred CCccCCcccCccEeC---CCCCccCHHHHHHHHHhc--CCCCCCCCC
Confidence 377777554333333 699999999987654432 235678877
No 368
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=41.87 E-value=38 Score=26.87 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 8 LDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 8 l~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
++|+.+.+ . ..||.+|.+.+ ++++....+..+|..+..+. -.+.-+++||.|.++-
T Consensus 4 vNg~~~~~--~--~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRPL--E--GKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEECC--T--TCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEE
T ss_pred ECCEEEEc--C--CCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEe
Confidence 46766654 3 58999999887 45667777888999886431 2234478999999885
No 369
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.63 E-value=27 Score=30.14 Aligned_cols=34 Identities=32% Similarity=0.702 Sum_probs=27.9
Q ss_pred CCcEEEecCC-CcccccccCCCCCCCCCCCCCCCccCcC
Q psy11302 329 DKLIVCEECQ-HYYHIWCLKPPLESVPEDDEWFCPSCKR 366 (764)
Q Consensus 329 ~~ll~Cd~C~-~~~H~~Cl~PpL~~~P~~g~W~C~~C~~ 366 (764)
=.||+|..|. .+-|..|.. |... ...|.|..|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~~--~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRPN--SKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCTT--CSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHhC--CcCC--CCCEECCcCcc
Confidence 4899999997 599999997 5433 47899999983
No 370
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=41.61 E-value=12 Score=30.38 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=30.9
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCC--CCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESV--PEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~--P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-....++ .|+..||..|+..-+... ...+.-.||.|+...
T Consensus 14 ~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 14 TCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp EETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 377777543332232 699999999998766542 112357899999544
No 371
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.53 E-value=3.9 Score=33.99 Aligned_cols=44 Identities=23% Similarity=0.549 Sum_probs=29.1
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...-.. .++ -.|...||..|+..-+.. ...||.|+....
T Consensus 17 ~C~IC~~~~~~-p~~--~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQN-PVV--TKCRHYFCESCALEHFRA-----TPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCS-EEE--CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC
T ss_pred CCcCCCchhcC-eeE--ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc
Confidence 37777643322 222 479999999998765543 248999997655
No 372
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=41.41 E-value=27 Score=31.10 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=35.7
Q ss_pred ccccccceeeeeecc---cCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 128 QYYKVGDYVDAILET---EGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 128 g~ykvg~~vD~~d~~---~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
--|.+||-|=|...+ -+-|+||+|++|...... ......-|.|-|.++
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~---~~~~~~~Y~VHY~GW 68 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNE---HGLRFYEYKIHFQGW 68 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECT---TSCEEEEEEEEETTS
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCc---cccCceEEEEEeCCC
Confidence 468999999997743 678999999999875321 012347899999876
No 373
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=40.24 E-value=45 Score=28.76 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=31.6
Q ss_pred EEEEeC-CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE
Q psy11302 3 VKIRSL-DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY 46 (764)
Q Consensus 3 I~VKtl-~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif 46 (764)
++||.. ++..+.|.|.+ +.+..+|+.+|..+..+ +.+.|++
T Consensus 13 ~KVK~yy~DDIiAIrvP~-di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKG-DTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp EEEEECBTTCCEEEEECS-CCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred eEEEEEecCcEEEEECCC-CCCHHHHHHHHHHHhcc--cceEEEE
Confidence 344443 56788999997 99999999999999988 3455444
No 374
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=39.85 E-value=9.3 Score=34.44 Aligned_cols=71 Identities=10% Similarity=0.184 Sum_probs=41.6
Q ss_pred CEEEEEeCC------CCEEEEEEcC---CCCcHHHHHHHHHhhcCCCCCCeEEEE-CC--e------eCCCCcCc-----
Q psy11302 1 MYVKIRSLD------GSKNCVLVLS---KRTLISDMKTQIENTLDVPVDKQRLFY-KG--K------QLEDEYML----- 57 (764)
Q Consensus 1 MqI~VKtl~------Gk~~~l~v~~---~~~TV~~LK~~I~~~~gip~~~QrLif-~G--K------~L~D~~tL----- 57 (764)
|+|+|+.+. |+...+++.. ...||.+|-..|.+.+ +....+||- +| . +|-++.-.
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 677777653 4555666552 1249999999998875 222333332 23 1 33333322
Q ss_pred cccCcCCCCEEEEEEe
Q psy11302 58 FDYNVNLNDVIQLMIK 73 (764)
Q Consensus 58 ~dy~I~~g~tI~Lvvr 73 (764)
.+|-+++||.|.++-.
T Consensus 83 ldt~L~dgD~V~fist 98 (110)
T 2k9x_A 83 MDYVLNDGDTVEFIST 98 (110)
T ss_dssp SCCCCCSSCEEEEEEC
T ss_pred cccCCCCcCEEEEeCC
Confidence 3577999999887643
No 375
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=39.78 E-value=38 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.5
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQG 236 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (764)
.+++||.+++-|. +-|-||-|.|+++..
T Consensus 27 ~~~~G~~c~a~~~-----~d~~wyRA~I~~~~~ 54 (94)
T 3fdr_A 27 TVHVGDIVAAPLP-----TNGSWYRARVLGTLE 54 (94)
T ss_dssp CCCTTCEEEEEET-----TTTEEEEEEEEEECT
T ss_pred CCCCCCEEEEEEC-----CCCeEEEEEEEEECC
Confidence 3689999999994 348999999999864
No 376
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=39.52 E-value=25 Score=35.20 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=42.3
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~ 199 (764)
.++|+++=|+-..-|.|+-|+|++|... -.+.|.|-||.... .++..+|||-....+
T Consensus 66 ~~~G~~c~a~~~~d~~WyRa~V~~~~~~-----------~~~~V~~vDyGn~~--~v~~~~l~~l~~~f~ 122 (226)
T 4b9x_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPS-----------GNVKVHFVDYGNVE--EVTTDQLQAILPQFL 122 (226)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSS-----------SEEEEECTTTCCEE--EEEGGGEECCCGGGS
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-----------CeEEEEEEecCCEE--EEEHHHhccChHHHc
Confidence 4689999999888899999999988643 23778888886554 455667777655443
No 377
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.26 E-value=18 Score=27.57 Aligned_cols=17 Identities=41% Similarity=1.365 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCccCcCC
Q psy11302 349 PLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~ 367 (764)
+...+| .+|.||.|...
T Consensus 23 ~f~~lP--~dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLP--DDWCCPVCGVS 39 (46)
T ss_dssp CGGGSC--TTCBCTTTCCB
T ss_pred chhhCC--CCCcCcCCCCc
Confidence 455778 57999999854
No 378
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.06 E-value=29 Score=28.55 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=41.6
Q ss_pred ccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
.-|++||-|=||..+ |-.+-+.|++|..+. --+.|+|+ |+-..=+..+||++-|
T Consensus 8 ~~f~eGqdVLarWsD-GlfYlGtV~kV~~~~----------~~ClV~Fe---D~s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD-GLLYLGTIKKVDSAR----------EVCLVQFE---DDSQFLVLWKDISPAA 61 (68)
T ss_dssp CCCCTTCEEEEECTT-SSEEEEEEEEEETTT----------TEEEEEET---TTEEEEEETTTEECCC
T ss_pred cccccCCEEEEEecC-CcEEEeEEEEEecCC----------cEEEEEEc---cCCeeeeeeecccccc
Confidence 368999999999954 999999999999763 45778866 5555666667777655
No 379
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.87 E-value=8.5 Score=33.64 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=29.8
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
|.+|...-....++ .|++.||..|+..-+..- .+...||.|+....
T Consensus 24 C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 24 CPICLELIKEPVST---KCDHIFCKFCMLKLLNQK--KGPSQCPLCKNDIT 69 (112)
T ss_dssp CSSSCCCCSSCCBC---TTSCCCCSHHHHHHHHSS--SSSCCCTTTSCCCC
T ss_pred CcccChhhcCeEEC---CCCCHHHHHHHHHHHHhC--CCCCCCcCCCCcCC
Confidence 77776543322222 699999999987554432 24578999986543
No 380
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=38.57 E-value=8 Score=30.68 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=30.3
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCcc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTSE 370 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~~ 370 (764)
.|.+|...-.. ....-.|...||..|+..-+.. ...||.|+.....
T Consensus 7 ~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCCC
T ss_pred CCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhHh
Confidence 48888754322 2244579999999998754432 2489999965543
No 381
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=38.50 E-value=1e+02 Score=26.56 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=42.2
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCCcHHHHHHHHHhhcC-CCC-----C----Ce-------EEEECCeeCCCCcC
Q psy11302 1 MYVKIRSLD------G-SKNCVLVLSKRTLISDMKTQIENTLD-VPV-----D----KQ-------RLFYKGKQLEDEYM 56 (764)
Q Consensus 1 MqI~VKtl~------G-k~~~l~v~~~~~TV~~LK~~I~~~~g-ip~-----~----~Q-------rLif~GK~L~D~~t 56 (764)
|+|+|+.+- | +++.++ ..||.+|.+.+..... +.. . .. .+..+|+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~----~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS----GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE----CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe----CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC
Confidence 688888863 3 344444 3799999999987742 111 0 13 67788887742211
Q ss_pred ccccCcCCCCEEEEE
Q psy11302 57 LFDYNVNLNDVIQLM 71 (764)
Q Consensus 57 L~dy~I~~g~tI~Lv 71 (764)
.++-+++||.|.++
T Consensus 80 -~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 -LETLLKDSDEIGIL 93 (99)
T ss_dssp -TTSCCCTTEEEEEE
T ss_pred -CCCCCCCCCEEEEE
Confidence 23457899999886
No 382
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=38.02 E-value=4.9 Score=43.47 Aligned_cols=49 Identities=29% Similarity=0.608 Sum_probs=33.6
Q ss_pred CccCCCCCCC-C--CcEEEe--cCCCcccccccCCCCCCCCCCC-------CCCCccCcCCC
Q psy11302 319 CSICAGKTSP-D--KLIVCE--ECQHYYHIWCLKPPLESVPEDD-------EWFCPSCKRDT 368 (764)
Q Consensus 319 C~vC~~~~~~-~--~ll~Cd--~C~~~~H~~Cl~PpL~~~P~~g-------~W~C~~C~~~~ 368 (764)
|.+|-....+ + ....|+ .|...||..||..-|.+.+ .+ -=-||.|+.+-
T Consensus 311 CaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~-~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM-DGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHH-SSSCTTTCCEEECTTTCCEE
T ss_pred CcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCC-CccccccccCCCCCCCCCcC
Confidence 7787765443 2 334698 8999999999987666554 21 12599999543
No 383
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.90 E-value=32 Score=27.85 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCccccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 126 DSQYYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 126 ~~g~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
++.-|++||-|=||. +-|-.+-+.|++|..+. --+.|.|+ ++...=+..+||++-|
T Consensus 4 g~~~f~eGqdVLarW-sDGlfYlgtV~kV~~~~----------~~ClV~Fe---D~s~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRW-TDGLYYLGKIKRVSSSK----------QSCLVTFE---DNSKYWVLWKDIQHAG 59 (63)
T ss_dssp SCCCCCTTCEEEEEC-TTSCEEEEEECCCCSTT----------SEEEEEET---TSCEEEEEGGGEECCS
T ss_pred CccceecCCEEEEEe-cCCCEEEEEEEEEecCC----------CEEEEEEc---cCceeEEEeecccccC
Confidence 456799999999998 78999999999998763 45778876 5555556566666543
No 384
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=37.51 E-value=40 Score=30.46 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=33.7
Q ss_pred ccccccceeeeeecc---cCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCC
Q psy11302 128 QYYKVGDYVDAILET---EGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKY 178 (764)
Q Consensus 128 g~ykvg~~vD~~d~~---~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~ 178 (764)
-.|.+||-|=|.-.+ -+-|+||+|++|....... .....-|.|-|.+.
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~---g~~~~~Y~VHY~GW 68 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEK---GRKIPEYLIHFNGW 68 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTT---CCEEEEEEEEETTS
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcc---cccceEEEEEECCC
Confidence 368999999997421 1389999999999763200 00137899999876
No 385
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.47 E-value=7.4 Score=31.30 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=30.0
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-. +..++ .|...||..|+..-+.. . .+.-.||.|+...
T Consensus 22 ~C~IC~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~-~-~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 22 ICPICLDILQ-KPVTI--DCGHNFCLKCITQIGET-S-CGFFKCPLCKTSV 67 (73)
T ss_dssp BCTTTCSBCS-SEEEC--TTCCEEEHHHHHHHCSS-S-CSCCCCSSSCCCC
T ss_pred EeccCCcccC-CeEEc--CCCChhhHHHHHHHHHc-C-CCCCCCCCCCCcC
Confidence 4788875432 22222 89999999999765542 1 2456899999543
No 386
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.66 E-value=8.9 Score=39.16 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=30.0
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
|.+|..---. -..|..|...||..|+.--+.. .+.--||.|...
T Consensus 183 C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~---~~~~~CP~C~~~ 226 (238)
T 3nw0_A 183 CNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQS---NAEPRCPHCNDY 226 (238)
T ss_dssp CTTTCSBCSS--CEECSSSCCEECHHHHHHHTTT---CSSCBCTTTCCB
T ss_pred CcchhhHHhC--CcccCccChHHHHHHHHHHHHh---CCCCCCCCCCCC
Confidence 6666654333 3678889999999999644333 234589999753
No 387
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=36.37 E-value=25 Score=34.48 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=42.0
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~ 199 (764)
.++|+++=|+-..-|.|+-|+|++|.... .+.|.|-||.... .++..+|||-....+
T Consensus 66 ~~~G~~c~a~~~~d~~wyRa~V~~~~~~~-----------~~~V~~vDyG~~~--~v~~~~l~~l~~~f~ 122 (201)
T 4b9w_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSG-----------NVKVHFVDYGNVE--EVTTDQLQAILPQFL 122 (201)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTS-----------CEEEEETTTCCEE--EECGGGEEECCGGGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCC-----------eEEEEEEccCCEE--EEEHHHhccChHhHc
Confidence 46899999998888999999999886431 2678888886554 455677877655443
No 388
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=36.01 E-value=12 Score=34.98 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=29.1
Q ss_pred ccccccccccccc---Cc--eecCCCCcchHhHHHHHHhhcCCCcCCCcccccc
Q psy11302 687 EKFLCIICQELVY---KP--ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKE 735 (764)
Q Consensus 687 e~~~C~IC~e~l~---~P--vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~ 735 (764)
..-.|.+|+..+- .+ +-..|.|.+|..|-...-.......+.|-.|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4567999998773 11 2258999999998432111111112557777654
No 389
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=35.84 E-value=6 Score=36.53 Aligned_cols=42 Identities=24% Similarity=0.672 Sum_probs=27.4
Q ss_pred CccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 319 CSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 319 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
|.+|...-.. .+. -.|++.||..|+..-+..- -.||.|+...
T Consensus 56 C~iC~~~~~~--~~~-~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 97 (138)
T 4ayc_A 56 CIICSEYFIE--AVT-LNCAHSFCSYCINEWMKRK-----IECPICRKDI 97 (138)
T ss_dssp CTTTCSBCSS--EEE-ETTSCEEEHHHHHHHTTTC-----SBCTTTCCBC
T ss_pred CcccCcccCC--ceE-CCCCCCccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 7777743322 222 2699999999987554433 3699998654
No 390
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=35.08 E-value=14 Score=32.57 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=31.1
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...-.. ...+ .|+..||..|+..-+. .+...||.|+....
T Consensus 17 ~C~iC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 17 QCGICMEILVE-PVTL--PCNHTLCKPCFQSTVE----KASLCCPFCRRRVS 61 (115)
T ss_dssp BCTTTCSBCSS-CEEC--TTSCEECHHHHCCCCC----TTTSBCTTTCCBCH
T ss_pred CCccCCcccCc-eeEc--CCCCHHhHHHHHHHHh----HCcCCCCCCCcccC
Confidence 48888754322 2333 7999999999986554 34578999997654
No 391
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=34.78 E-value=57 Score=28.52 Aligned_cols=42 Identities=10% Similarity=-0.037 Sum_probs=31.5
Q ss_pred cceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCC
Q psy11302 133 GDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKD 180 (764)
Q Consensus 133 g~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~ 180 (764)
|+.|=|+- .-|.|.+|+|++|..... .+...-|+|-|.++-.
T Consensus 18 ~e~vlc~~-~dg~~yeAeIl~ir~~~~-----~~~~~~YYVHY~g~Nk 59 (92)
T 2bud_A 18 DKIYFIRR-EDGTVHRGQVLQSRTTEN-----AAAPDEYYVHYVGLNR 59 (92)
T ss_dssp TSCEEEEC-TTSCEEEEEEEEEECTTT-----CSSCCEEEEECSSSCT
T ss_pred CCEEEEEe-CCCCEEEEEEEEEeeccC-----CCCCcEEEEEeCCccc
Confidence 56777776 468999999999987632 1245789999998843
No 392
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.86 E-value=7.7 Score=31.02 Aligned_cols=41 Identities=22% Similarity=0.581 Sum_probs=28.5
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.+|...-.. .--.|...||..|+..-+. ....||.|+..
T Consensus 17 ~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~ 57 (70)
T 2ecn_A 17 ECCICMDGRAD----LILPCAHSFCQKCIDKWSD-----RHRNCPICRLQ 57 (70)
T ss_dssp CCSSSCCSCCS----EEETTTEEECHHHHHHSSC-----CCSSCHHHHHC
T ss_pred CCeeCCcCccC----cccCCCCcccHHHHHHHHH-----CcCcCCCcCCc
Confidence 48888754333 2346999999999986554 24589999843
No 393
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=33.27 E-value=47 Score=26.55 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=39.9
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLP 195 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra 195 (764)
-|++||-|=||-.+ |-.+-|.|++|.+.. --|.|+|+ ++...=+..++|++-|
T Consensus 3 ~f~~GedVLarwsD-G~fYlGtI~~V~~~~----------~~clV~F~---D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 3 RLWEGQDVLARWTD-GLLYLGTIKKVDSAR----------EVCLVQFE---DDSQFLVLWKDISPAA 55 (58)
T ss_dssp SCCTTCEEEEECTT-SCEEEEEEEEEETTT----------TEEEEEET---TSCEEEEEGGGEEECS
T ss_pred ccccCCEEEEEecC-CCEEeEEEEEEecCC----------CEEEEEEc---CCCeEEEEhHHccccc
Confidence 37899999999955 999999999998874 36889977 4555556556665543
No 394
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.89 E-value=20 Score=34.22 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=29.6
Q ss_pred ccccccccccccc---Cc--eecCCCCcchHhHHHHHHhhcCCCcCCCcccccc
Q psy11302 687 EKFLCIICQELVY---KP--ITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKE 735 (764)
Q Consensus 687 e~~~C~IC~e~l~---~P--vtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~ 735 (764)
.+-.|.+|+..|. ++ +-..|.|.+|..|-. +.. ....+.|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~--~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP--EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS--SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC--CCCcEeeHHHHHH
Confidence 5678999998653 22 225899999999952 111 1122668888654
No 395
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.71 E-value=1.4e+02 Score=26.38 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=49.1
Q ss_pred EEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE-------CCeeCCCCcCccc----cCcCCCCEEEEE
Q psy11302 3 VKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY-------KGKQLEDEYMLFD----YNVNLNDVIQLM 71 (764)
Q Consensus 3 I~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif-------~GK~L~D~~tL~d----y~I~~g~tI~Lv 71 (764)
|+|=..||...+|.|++ ++|+.++-++++++.++..+.-.=+| --+.|+|...|-+ +.+.....+.+.
T Consensus 12 vkvf~~Dgssksi~V~~-~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~ 90 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAA-GATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFR 90 (100)
T ss_dssp EEEEETTSCEEEEEECT-TCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEEC
T ss_pred EEEEecCCCEEEEEECC-CCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEe
Confidence 56667899999999998 99999999999999987655544333 3356777665433 445555555554
Q ss_pred Ee
Q psy11302 72 IK 73 (764)
Q Consensus 72 vr 73 (764)
-|
T Consensus 91 kr 92 (100)
T 1wgr_A 91 KN 92 (100)
T ss_dssp SC
T ss_pred cc
Confidence 33
No 396
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=32.63 E-value=53 Score=26.62 Aligned_cols=54 Identities=6% Similarity=0.174 Sum_probs=38.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCe--EEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 11 SKNCVLVLSKRTLISDMKTQIENTLDVPVDKQ--RLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 11 k~~~l~v~~~~~TV~~LK~~I~~~~gip~~~Q--rLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
....+++.. ..||.+|.+.+.....- .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~-~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQ-ALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSS-CEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 345666654 68999999999876420 1233 788899988754 347889999886
No 397
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=31.43 E-value=6.5 Score=34.23 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=32.6
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...- ..-+.|-.|+..||..|+..-+..-. -.||.|+....
T Consensus 24 ~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQR----AQCPHCRAPLQ 69 (100)
T ss_dssp BCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHTC----SBCTTTCCBCC
T ss_pred CCccCCccc--cCccccCCCCChhhHHHHHHHHHHCc----CCCCCCCCcCC
Confidence 488887543 34566688999999999976554332 58999996543
No 398
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=30.93 E-value=46 Score=37.11 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=74.3
Q ss_pred Cccccccceeeee---ecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCC----cccccccccccCccccc
Q psy11302 127 SQYYKVGDYVDAI---LETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDG----SSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 127 ~g~ykvg~~vD~~---d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~ir~ra~~~~ 199 (764)
.+--|+||.|=++ ....+.|.=|.|+++.... --|+|.-.|-.+.| ...++.++|-|-.++--
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~----------~~y~v~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 454 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADG----------TRFEVRDPEPDELGNSGKVYKCNRKELLLIPPGFP 454 (522)
T ss_dssp CCCBCTTCEEEECCC-----CCEEEEEEEEEETTT----------TEEEEEECSCBTTBTTCEEEEECGGGEEEECSSCC
T ss_pred ccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCC----------CEEEEeCCCCCCCCCCCeeEEccHHHEEECCCCCc
Confidence 3345899999997 3356899999999998553 37888876333332 35666666666543222
Q ss_pred ccccccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEecCCCccccccccchhhhhhhhcccCchhhh
Q psy11302 200 TEFNENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIGKKGLETRLENCKIKFVKELYKIESPKLLA 279 (764)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg~~~~~~~l~~c~i~f~~e~~~iE~~~~l~ 279 (764)
=..+++|+.||.=| |.-.- .|-|+|..-. ++. -+.-.|-|++ +.. +..-|+..|-++-|.+++
T Consensus 455 --~~~~~~~~~v~a~~----p~tt~-fy~a~v~~~~--~~~--~~~~~f~~~~--~~~----~~~~~~~~~v~~~~~~~~ 517 (522)
T 3mp6_A 455 --TKNYPPGTKVLARY----PETTT-FYPAIVIGTK--RDG--TCRLRFDGEE--EVD----KETEVTRRLVLPSPTALA 517 (522)
T ss_dssp --CCCCCTTCEEEEEC----TTCSE-EEEEEEEEEC--TTS--CEEEEETTC----------CCEEECGGGEEECHHHHC
T ss_pred --ccCCCCCCEEEEEC----CCCcc-eEeEEEecCC--CCC--eEEEEecCCC--CCC----ccccccceeEEecCchhc
Confidence 14589999999988 44444 5788887732 221 2344444432 111 334456666666554443
No 399
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.79 E-value=16 Score=25.70 Aligned_cols=11 Identities=27% Similarity=1.226 Sum_probs=9.5
Q ss_pred CCCCCCccCcC
Q psy11302 356 DDEWFCPSCKR 366 (764)
Q Consensus 356 ~g~W~C~~C~~ 366 (764)
.|||.|+.|..
T Consensus 4 ~gDW~C~~C~~ 14 (33)
T 2k1p_A 4 ANDWQCKTCSN 14 (33)
T ss_dssp SSSCBCSSSCC
T ss_pred CCCcccCCCCC
Confidence 68999999974
No 400
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.61 E-value=12 Score=30.76 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=29.8
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCC--CCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLES--VPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~--~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...-... .++ .|...||..|+..-+.. .. .+.-.||.|+....
T Consensus 21 ~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~~~~~-~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 21 TCPICLELLTQP-LSL--DCGHSFCQACLTANHKKSMLD-KGESSCPVCRISYQ 70 (85)
T ss_dssp CCTTTCSCCSSC-BCC--SSSCCBCTTHHHHHHHHHHHT-TSCCCCTTTCCSSC
T ss_pred CCCCCCcccCCc-eeC--CCCCHHHHHHHHHHHHHhhcC-CCCCcCCCCCCccC
Confidence 377777543322 222 69999999998754432 11 24568999995443
No 401
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.72 E-value=9.6 Score=30.15 Aligned_cols=43 Identities=23% Similarity=0.503 Sum_probs=28.4
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.+|...-....+ -.|+..||..|+..-+. .+...||.|+..
T Consensus 17 ~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 17 KCEKCHLVLCSPKQ---TECGHRFCESCMAALLS----SSSPKCTACQES 59 (66)
T ss_dssp ECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT----TSSCCCTTTCCC
T ss_pred CCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH----hCcCCCCCCCcC
Confidence 37777654332222 27999999999876553 234589999854
No 402
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=29.70 E-value=32 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEE
Q psy11302 14 CVLVLSKRTLISDMKTQIENTLDVPVDKQRLFY 46 (764)
Q Consensus 14 ~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif 46 (764)
.+.|.. ++|+.+|+++|++.+|+|+++|||-.
T Consensus 39 ~~rv~k-~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 39 VFKVLK-NSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEET-TSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred eEEEcC-cCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 567774 99999999999999999999999853
No 403
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=29.09 E-value=1.6e+02 Score=27.19 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=62.8
Q ss_pred ccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCcc------ccccccc
Q psy11302 130 YKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPK------HLITEFN 203 (764)
Q Consensus 130 ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~------~~~~~~~ 203 (764)
.++||.|=+.|.+ |..-...|+.+..... +....+|.|..+ +...+.++....=..+. ..+ .=.
T Consensus 21 L~~GD~Vla~d~~-G~~~~s~V~~~~~r~~-----~~~~~f~~I~t~---~g~~L~lTp~H~i~v~~~~~~~~~~v-~A~ 90 (145)
T 1at0_A 21 LSIGDRVLSMTAN-GQAVYSEVILFMDRNL-----EQMQNFVQLHTD---GGAVLTVTPAHLVSVWQPESQKLTFV-FAD 90 (145)
T ss_dssp CCTTCEEEEECTT-SCEEEEEEEEEEEEEE-----EEEEEEEEEEET---TSCEEEECTTCEEEEEETTTTEEEEE-EGG
T ss_pred cCCCCEEEEECCC-CCEEEEEEEEEEeeCC-----CcceeEEEEEEC---CCCEEEEeCCCEEEEecCCCCcEEEE-EHH
Confidence 3799999999964 7765555555543311 012367777764 11234444333222222 223 557
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecccccceeeEEEEEec
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQGKRLTTELIATVFIG 250 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~lg 250 (764)
+|++||.|++... +.|-+.-..|.++.. .....+|+-|...
T Consensus 91 ~l~~GD~v~~~~~-----~~~~~~~~~V~~v~~-~~~~G~yaPlT~~ 131 (145)
T 1at0_A 91 RIEEKNQVLVRDV-----ETGELRPQRVVKVGS-VRSKGVVAPLTRE 131 (145)
T ss_dssp GCCTTCEEEEECT-----TTCCEEEEEEEEEEE-EEEEEEEEEEESS
T ss_pred HCcCCCEEEEecC-----CCCCEEEEEEEEEEE-EEEeeeEccccCc
Confidence 8999999998763 245578888888776 3345688866555
No 404
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=28.91 E-value=53 Score=28.95 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.3
Q ss_pred ccccccEEecccCCCCCccccceeeeeEeeecc
Q psy11302 204 ENLIGVRVMGNYNAEEPRERGYWHDMIIEKKQG 236 (764)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (764)
.+++|+.|++-|.- -|-||-+.|+++..
T Consensus 32 ~~~~G~~c~a~~~~-----d~~wyRA~V~~~~~ 59 (110)
T 2diq_A 32 TVHVGDIVAAPLPT-----NGSWYRARVLGTLE 59 (110)
T ss_dssp CCCTTCEEEECCTT-----TCSCEEEEECCCCS
T ss_pred CCCCCCEEEEEECC-----CCeEEEEEEEEECC
Confidence 46899999999953 37899999999765
No 405
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=28.05 E-value=40 Score=31.53 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred ccccccceeeeeecccCcccceeeeeeEe
Q psy11302 128 QYYKVGDYVDAILETEGAWFESQITHILV 156 (764)
Q Consensus 128 g~ykvg~~vD~~d~~~gaWfea~i~~i~~ 156 (764)
.-|.+|+.|=|.. -+-|+||+|++|..
T Consensus 8 ~~f~~gekvl~~h--g~llYeAKVl~v~~ 34 (136)
T 2k3y_A 8 QEFALGGRVLAFH--GPLMYEAKILKIWD 34 (136)
T ss_dssp GSCCTTSEEEEEC--SSCEEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCeeEEEEEEEEEe
Confidence 3699999999988 46699999999996
No 406
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.72 E-value=50 Score=26.51 Aligned_cols=40 Identities=35% Similarity=0.722 Sum_probs=27.8
Q ss_pred cccccccccccCce---ecCCCCcchHhHHHHHHhhcCCCcCCCccc
Q psy11302 689 FLCIICQELVYKPI---TLDCVHTFCHDCLKRAFKIESDACNSCPYC 732 (764)
Q Consensus 689 ~~C~IC~e~l~~Pv---tt~CgH~FC~~CL~~~~~~~~~~~~~CP~C 732 (764)
..|-.|+..+.... -..|.+.||..| ..|..... ..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC--D~fiHe~L--h~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC--DVFVHDSL--HSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH--HHTTTTTS--CSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch--hHHHHhhc--cCCcCC
Confidence 45888988875543 247999999999 44554442 249987
No 407
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=27.52 E-value=18 Score=28.26 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=18.4
Q ss_pred CCC--Cceeecceecchhhhhhhcc
Q psy11302 420 GPI--PGIEVGQSYLYRFQASEAGV 442 (764)
Q Consensus 420 G~i--pGv~vG~~~~~r~~~~~~G~ 442 (764)
|.| |++.+|-.|.++.+...+++
T Consensus 28 G~I~Pp~~KvGr~wrv~~~a~~v~~ 52 (52)
T 2og0_A 28 SRIFPPPVKDGREYLFHESAVKVDL 52 (52)
T ss_dssp TCEESCCEEETTEEEEETTCEECC-
T ss_pred CCCCCcccccCCEEEEcccceeeCC
Confidence 557 89999999999988766553
No 408
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=27.44 E-value=88 Score=26.22 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=42.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCeeCCCCcCccccCcCCCCEEEEEE
Q psy11302 2 YVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLMI 72 (764)
Q Consensus 2 qI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lvv 72 (764)
+|+|-+++|..+.+. .-.|+.++=..|....+-.. .--..+|+...-+ +-+++|++|.++.
T Consensus 7 ~i~v~tP~G~~~~lp---~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDVISLP---IGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCEEEEE---TTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEEE
T ss_pred eEEEECCCCCEEEec---CCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEEc
Confidence 589999999887766 36899999888765443211 2234478776654 4468899998875
No 409
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=27.33 E-value=46 Score=37.98 Aligned_cols=57 Identities=12% Similarity=0.318 Sum_probs=43.9
Q ss_pred cccccceeeeeecccCcccceeeeeeEecCCCCCCCCCCCeEEEEEeCCCCCCCcccccccccccCccccc
Q psy11302 129 YYKVGDYVDAILETEGAWFESQITHILVDINKEKPYDEDDLIFKVVHLKYKDDGSSTMKFDDIRPLPKHLI 199 (764)
Q Consensus 129 ~ykvg~~vD~~d~~~gaWfea~i~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ir~ra~~~~ 199 (764)
..++|+++=|+-. -|.|+-|+|++|... -.|.|.|-||..... ++..+|||-...++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~~-----------~~~~V~fvDyGn~e~--v~~~~Lr~l~~~f~ 467 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVESP-----------AKIHVFYIDYGNREV--LPSTRLGTLSPAFS 467 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET-----------TEEEEEETTTCCEEE--ECGGGEECCCGGGS
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcCC-----------CeEEEEEEeCCCeEE--EEHHHCccCCHHHh
Confidence 4679999999986 799999999999863 357899888855544 55677887765444
No 410
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=26.71 E-value=15 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=0.0
Q ss_pred cCCCCCCCCcCCcCCccCCCccCccCCCC
Q psy11302 297 RQIVPECTTCNDVETKHCKDCGCSICAGK 325 (764)
Q Consensus 297 r~~~~~C~~C~~~~~~~c~~c~C~vC~~~ 325 (764)
|...|.|..|...... ..-.|..|+..
T Consensus 5 ~~g~W~C~~C~~~N~~--~~~~C~~C~~p 31 (92)
T 3gj8_B 5 SVGSWECPVCCVSNKA--EDSRCVSCTSE 31 (92)
T ss_dssp -----------------------------
T ss_pred CCcCCCCCcCCCEecc--ccceecccCCC
Confidence 6778999999975322 34458888864
No 411
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=26.60 E-value=13 Score=25.90 Aligned_cols=14 Identities=21% Similarity=0.959 Sum_probs=11.3
Q ss_pred CCCCCCCccCcCCC
Q psy11302 355 EDDEWFCPSCKRDT 368 (764)
Q Consensus 355 ~~g~W~C~~C~~~~ 368 (764)
.+|+|-|..|..+.
T Consensus 15 regdwcchkcvpeg 28 (36)
T 4b2u_A 15 REGDWCCHKCVPEG 28 (36)
T ss_dssp GGCCSSSSEEEEET
T ss_pred CccCeeeecccccC
Confidence 38999999998544
No 412
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.33 E-value=57 Score=24.91 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=26.2
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...-..-.++ .|...|+..|+.. ..-.||.|+...
T Consensus 8 ~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~--------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 8 RCQQCQAEAKCPKLL---PCLHTLCSGCLEA--------SGMQCPICQAPW 47 (56)
T ss_dssp SCSSSCSSCBCCSCS---TTSCCSBTTTCSS--------SSSSCSSCCSSS
T ss_pred CceEeCCccCCeEEc---CCCCcccHHHHcc--------CCCCCCcCCcEe
Confidence 488887544333333 4888899889863 235799998543
No 413
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=26.29 E-value=46 Score=38.98 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=40.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHhhcCCCCCCeEEEECCe-eCCCCcCcccc
Q psy11302 9 DGSKNCVLVLSKRTLISDMKTQIENTLDVPVDKQRLFYKGK-QLEDEYMLFDY 60 (764)
Q Consensus 9 ~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~~~QrLif~GK-~L~D~~tL~dy 60 (764)
..+...+.+.+ ..|+.+|+..|++.+||+++.|.|++.+. .|.......+|
T Consensus 320 ~~~~~~~~i~~-~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTE-NENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCT-TCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCC-CccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34556788886 99999999999999999999999998654 44445555554
No 414
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=25.95 E-value=12 Score=35.52 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=31.2
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCC
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~ 368 (764)
.|.+|...- ..-+.+..|+..||..|+..-+.. +...||.|+...
T Consensus 56 ~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDML--KNTMTTKECLHRFCADCIITALRS----GNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----TCCBCTTTCCBC
T ss_pred CCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----CcCCCCCCCCcC
Confidence 488887432 234555689999999998755442 346899999654
No 415
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.68 E-value=15 Score=26.31 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=10.3
Q ss_pred cccccccccccccCc
Q psy11302 687 EKFLCIICQELVYKP 701 (764)
Q Consensus 687 e~~~C~IC~e~l~~P 701 (764)
+-|.||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 457788887766655
No 416
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=15 Score=30.42 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=29.8
Q ss_pred cCccCCCCCCCCC-cEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCC
Q psy11302 318 GCSICAGKTSPDK-LIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 318 ~C~vC~~~~~~~~-ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~ 367 (764)
.|.+|...-..+. ...--.|...||..|+..-+..- .+...||.|+..
T Consensus 17 ~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS--INGVRCPFCSKI 65 (88)
T ss_dssp BCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC--SSCBCCTTTCCC
T ss_pred CCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC--CCCcCCCCCCCc
Confidence 3777765433221 12223799999999987554432 134689999954
No 417
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.59 E-value=39 Score=29.17 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=31.9
Q ss_pred hhcccccccccccccCcee--cCCCCcchHhHHHHH------------HhhcCCCcCCCcccc
Q psy11302 685 IQEKFLCIICQELVYKPIT--LDCVHTFCHDCLKRA------------FKIESDACNSCPYCR 733 (764)
Q Consensus 685 l~e~~~C~IC~e~l~~Pvt--t~CgH~FC~~CL~~~------------~~~~~~~~~~CP~CR 733 (764)
+..+-.|.||...-..-.. -.|+-.|-..||.+. ..+....++.||.|.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 4467789999843322211 258889999999986 222223358899994
No 418
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=25.51 E-value=84 Score=35.51 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=38.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCCcHHHHHHHHHhhcCCCC--CCeEEEE
Q psy11302 1 MYVKIRSLDGSKNCVLVLSKRTLISDMKTQIENTLDVPV--DKQRLFY 46 (764)
Q Consensus 1 MqI~VKtl~Gk~~~l~v~~~~~TV~~LK~~I~~~~gip~--~~QrLif 46 (764)
|.+.|..++|....+.+++ .+|+.+|-+.|++..|+.. +..-|++
T Consensus 217 ~~~~V~l~dg~~~~~~v~~-~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINS-HTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECT-TCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCC-CCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4688999999999999998 9999999999999999974 3344554
No 419
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.37 E-value=32 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=37.8
Q ss_pred ccccccccccccc---CceecCCCCcchHhHHHHHHhhcCCCcCCCcccccccccc
Q psy11302 687 EKFLCIICQELVY---KPITLDCVHTFCHDCLKRAFKIESDACNSCPYCRKEMNKS 739 (764)
Q Consensus 687 e~~~C~IC~e~l~---~Pvtt~CgH~FC~~CL~~~~~~~~~~~~~CP~CR~~i~~~ 739 (764)
+-|.|..|...|. ......=+..||..|..+.|..... |..|...|...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~----C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGA----GGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCS----SSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCc----cccCCCCcCch
Confidence 4689999999885 3444566788999999998865333 99999988754
No 420
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.29 E-value=52 Score=28.12 Aligned_cols=19 Identities=37% Similarity=1.095 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCccCcCCCc
Q psy11302 349 PLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~~~ 369 (764)
+...+| .+|.||.|.....
T Consensus 53 ~fedlP--ddW~CPvCga~K~ 71 (81)
T 2kn9_A 53 RWDDIP--DDWSCPDCGAAKS 71 (81)
T ss_dssp CTTTSC--TTCCCTTTCCCGG
T ss_pred ChhHCC--CCCcCCCCCCCHH
Confidence 445677 6899999985433
No 421
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.98 E-value=40 Score=29.17 Aligned_cols=19 Identities=37% Similarity=1.163 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCccCcCCCc
Q psy11302 349 PLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~~~ 369 (764)
+...+| .+|.||.|.....
T Consensus 61 ~fedlP--ddW~CPvCga~K~ 79 (87)
T 1s24_A 61 RFEDIP--DDWCCPDCGATKE 79 (87)
T ss_dssp CGGGCC--TTCCCSSSCCCGG
T ss_pred ChhHCC--CCCCCCCCCCCHH
Confidence 456777 6899999985443
No 422
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.67 E-value=68 Score=24.94 Aligned_cols=17 Identities=41% Similarity=1.226 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCccCcCC
Q psy11302 349 PLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~ 367 (764)
+...+| .+|.||.|...
T Consensus 29 ~f~~lP--~dw~CP~Cg~~ 45 (52)
T 1e8j_A 29 KFEDLP--DDWACPVCGAS 45 (52)
T ss_dssp CTTSSC--TTCCCSSSCCC
T ss_pred chHHCC--CCCcCCCCCCc
Confidence 445677 68999999854
No 423
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=24.18 E-value=8.8 Score=34.54 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=28.8
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...-.. .+.+ .|++.||..|+..-+. .....||.|+....
T Consensus 54 ~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 54 QCICCQELVFR-PITT--VCQHNVCKDCLDRSFR----AQVFSCPACRYDLG 98 (124)
T ss_dssp BCTTTSSBCSS-EEEC--TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCC
T ss_pred CCCcCChHHcC-cEEe--eCCCcccHHHHHHHHh----HCcCCCCCCCccCC
Confidence 37777643222 2222 7999999999875544 23358999996554
No 424
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.24 E-value=50 Score=31.10 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=31.5
Q ss_pred cccccccccccccCceecCCCCcchHhHHHHHHhh-------cCCCcCCCccccc
Q psy11302 687 EKFLCIICQELVYKPITLDCVHTFCHDCLKRAFKI-------ESDACNSCPYCRK 734 (764)
Q Consensus 687 e~~~C~IC~e~l~~Pvtt~CgH~FC~~CL~~~~~~-------~~~~~~~CP~CR~ 734 (764)
.+..|.+|.+--.--.--.|-..||..||.+-+.. .....+.||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45679999863321111379999999999976631 1222477999974
No 425
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.52 E-value=57 Score=25.41 Aligned_cols=17 Identities=41% Similarity=1.228 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCccCcCC
Q psy11302 349 PLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~ 367 (764)
+...+| .+|.||.|...
T Consensus 28 ~f~~lP--~dw~CP~Cg~~ 44 (52)
T 1yk4_A 28 KFEDLP--DDWVCPLCGAP 44 (52)
T ss_dssp CGGGSC--TTCBCTTTCCB
T ss_pred CHhHCC--CCCcCCCCCCC
Confidence 345677 68999999853
No 426
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.29 E-value=62 Score=25.46 Aligned_cols=18 Identities=33% Similarity=1.075 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCccCcCCC
Q psy11302 349 PLESVPEDDEWFCPSCKRDT 368 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~~ 368 (764)
+...+| .+|.||.|....
T Consensus 29 ~f~~lP--~dw~CP~Cga~K 46 (55)
T 2v3b_B 29 RWEDIP--ADWVCPDCGVGK 46 (55)
T ss_dssp CGGGSC--TTCCCTTTCCCG
T ss_pred ChhHCC--CCCcCCCCCCCH
Confidence 345677 689999998543
No 427
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.88 E-value=57 Score=27.01 Aligned_cols=17 Identities=29% Similarity=1.058 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCccCcCC
Q psy11302 349 PLESVPEDDEWFCPSCKRD 367 (764)
Q Consensus 349 pL~~~P~~g~W~C~~C~~~ 367 (764)
+...+| .+|.||.|...
T Consensus 33 ~f~~lP--ddw~CP~Cga~ 49 (70)
T 1dx8_A 33 PFVDLS--DSFMCPACRSP 49 (70)
T ss_dssp CGGGSC--TTCBCTTTCCB
T ss_pred chhhCC--CCCcCCCCCCC
Confidence 345677 58999999853
No 428
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=20.78 E-value=22 Score=31.02 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=30.1
Q ss_pred cCccCCCCCCCCCcEEEecCCCcccccccCCCCCCCCCCCCCCCccCcCCCc
Q psy11302 318 GCSICAGKTSPDKLIVCEECQHYYHIWCLKPPLESVPEDDEWFCPSCKRDTS 369 (764)
Q Consensus 318 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~PpL~~~P~~g~W~C~~C~~~~~ 369 (764)
.|.+|...- ..-+....|+..||..|+..-+..- -.||.|+....
T Consensus 17 ~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~ 61 (108)
T 2ckl_A 17 MCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETS-----KYCPICDVQVH 61 (108)
T ss_dssp BCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSC-----SBCTTTCCBSC
T ss_pred CCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhC-----CcCcCCCcccc
Confidence 488887432 2234445899999999987544432 48999986543
No 429
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.69 E-value=36 Score=30.20 Aligned_cols=13 Identities=31% Similarity=0.963 Sum_probs=11.6
Q ss_pred cchHhHHHHHHhh
Q psy11302 709 TFCHDCLKRAFKI 721 (764)
Q Consensus 709 ~FC~~CL~~~~~~ 721 (764)
-||+.||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 430
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=20.62 E-value=2.5e+02 Score=23.04 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=36.7
Q ss_pred EEEcCCCCcHHHHHHHHHhhcC------C-----CCCCeEEEECCeeCCCCcCccccCcCCCCEEEEE
Q psy11302 15 VLVLSKRTLISDMKTQIENTLD------V-----PVDKQRLFYKGKQLEDEYMLFDYNVNLNDVIQLM 71 (764)
Q Consensus 15 l~v~~~~~TV~~LK~~I~~~~g------i-----p~~~QrLif~GK~L~D~~tL~dy~I~~g~tI~Lv 71 (764)
+++.. ..||.+|.+.+..... + ......+..+|+......- .+.-+++||.|.++
T Consensus 19 ~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEE
T ss_pred EEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEe
Confidence 45554 6899999999987742 1 0134578889987753211 23348899999886
No 431
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.48 E-value=36 Score=30.10 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=11.6
Q ss_pred cchHhHHHHHHhh
Q psy11302 709 TFCHDCLKRAFKI 721 (764)
Q Consensus 709 ~FC~~CL~~~~~~ 721 (764)
-||+.||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999984
No 432
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.42 E-value=2.3e+02 Score=24.57 Aligned_cols=51 Identities=8% Similarity=0.206 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHhhcCCCCCCeEEEE--CCeeCCCCcCccccCcCCCCEEEEEEeec
Q psy11302 22 TLISDMKTQIENTLDVPVDKQRLFY--KGKQLEDEYMLFDYNVNLNDVIQLMIKAD 75 (764)
Q Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLif--~GK~L~D~~tL~dy~I~~g~tI~Lvvr~~ 75 (764)
.+..+|+.+..+.++++....+|+. .|-+++|+.-+.. + +..|+-+++...
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~t--L-p~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQT--L-GDNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTT--S-CSSEEEEEEETT
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhh--C-CCCCEEEEEcCC
Confidence 6799999999999999877777776 4888776543322 2 355666666543
Done!