BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11303
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
           Complex With Nad
 pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
           Complex With Quinate And Nadh
 pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
           Complex With Shikimate And Nadh
          Length = 283

 Score = 29.3 bits (64), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 57  SCETALGLQLALHFSSLGFRVFAGFKP 83
            CET  G ++A+H +   FR+F G +P
Sbjct: 245 GCETLDGTRMAIHQAVDAFRLFTGLEP 271


>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
           Corynebacterium Glutamicum
          Length = 302

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 57  SCETALGLQLALHFSSLGFRVFAGFKP 83
            CET  G ++A+H +   FR+F G +P
Sbjct: 264 GCETLDGTRMAIHQAVDAFRLFTGLEP 290


>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
          Complexed With Nad+
 pdb|4IIN|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
          Complexed With Nad+
 pdb|4IIN|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
          Complexed With Nad+
 pdb|4IIN|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
          Complexed With Nad+
 pdb|4IJK|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
 pdb|4IJK|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
 pdb|4IJK|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
 pdb|4IJK|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
          Protein]reductase From Helicobacter Pylori 26695
          Length = 271

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 49 TARSILITSCETALGLQLALHFSSLGFRVFAGFKPS 84
          T +++LIT     +G ++A   +S+G +V+  ++ +
Sbjct: 28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,039,319
Number of Sequences: 62578
Number of extensions: 123911
Number of successful extensions: 315
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)