BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11303
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02337|BDH_BOVIN D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Bos taurus
GN=BDH1 PE=1 SV=2
Length = 344
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 33/146 (22%)
Query: 21 GALLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALHFSSLGFRVFAG 80
G+LLLY + + TY + + ++++LIT C++ G LA H S GF VFAG
Sbjct: 29 GSLLLYSAPFVPVGRRTYAASVDPVG---SKAVLITGCDSGFGFSLAKHLHSEGFLVFAG 85
Query: 81 FKPSGGENKSECKSEESKSDAYKILRAKLKSCQNHLLSASVNLDDSNVLKVITLPLDVTR 140
C ++ SD K LD ++ T+ L+V +
Sbjct: 86 -----------CLMKDKGSDGVK------------------ELDSMKSDRLRTVQLNVCK 116
Query: 141 EDSLHEAVDIIRRHLPAGEDG-WDII 165
+ + +A ++IR L E G W ++
Sbjct: 117 SEEVDKAAEVIRSSLEDPEKGLWGLV 142
>sp|Q80XN0|BDH_MOUSE D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Mus
musculus GN=Bdh1 PE=1 SV=2
Length = 343
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 23 LLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALHFSSLGFRVFAG 80
LL Y + TY + + + ++ILIT C++ G LA H S GF VFAG
Sbjct: 31 LLFYPASFSPDTRRTYASQ---ADAASGKAILITGCDSGFGFSLAKHLHSKGFLVFAG 85
>sp|P29147|BDH_RAT D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Bdh1 PE=1 SV=2
Length = 343
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 23 LLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALHFSSLGFRVFAG 80
LL Y + TY + + + +++L+T C++ G LA H S GF VFAG
Sbjct: 31 LLFYPASFSPDTRRTYTSQ---ADAASGKAVLVTGCDSGFGFSLAKHLHSKGFLVFAG 85
>sp|Q27979|RDH1_BOVIN 11-cis retinol dehydrogenase OS=Bos taurus GN=RDH5 PE=1 SV=1
Length = 318
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 53 ILITSCETALGLQLALHFSSLGFRVFAG-FKPSGGENKSECKSEESKSDAYKI-----LR 106
I IT C++ G LAL GFRV A PSG E+ S + + +R
Sbjct: 31 IFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDVTDPQSIR 90
Query: 107 AKLKSCQNHLLSASVN--LDDSNVLKVITLPLDVTRED 142
+K + H+ A + ++++ V +I TRED
Sbjct: 91 QAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTRED 128
>sp|Q02338|BDH_HUMAN D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Homo
sapiens GN=BDH1 PE=1 SV=3
Length = 343
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 50 ARSILITSCETALGLQLALHFSSLGFRVFAG 80
++++L+T C++ G LA H S GF VFAG
Sbjct: 55 SKAVLVTGCDSGFGFSLAKHLHSKGFLVFAG 85
>sp|O55240|RDH1_MOUSE 11-cis retinol dehydrogenase OS=Mus musculus GN=Rdh5 PE=1 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 53 ILITSCETALGLQLALHFSSLGFRVFAG-FKPSGGENKSECKSEE 96
I IT C++ G LAL GF+V AG PSG E+ + S
Sbjct: 31 IFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSR 75
>sp|P86198|BDH_MESAU D-beta-hydroxybutyrate dehydrogenase, mitochondrial (Fragments)
OS=Mesocricetus auratus GN=BDH1 PE=1 SV=1
Length = 132
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 52 SILITSCETALGLQLALHFSSLGFRVFAG 80
++L+T C++ G LA H S GF VFAG
Sbjct: 1 AVLVTGCDSGFGFSLAKHLHSKGFLVFAG 29
>sp|P0AFP4|YBBO_ECOLI Uncharacterized oxidoreductase YbbO OS=Escherichia coli (strain
K12) GN=ybbO PE=3 SV=1
Length = 269
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAG 80
+S+LIT C + +GL+ AL GF V AG
Sbjct: 16 KSVLITGCSSGIGLESALELKRQGFHVLAG 45
>sp|P0AFP5|YBBO_ECOL6 Uncharacterized oxidoreductase YbbO OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ybbO PE=3 SV=1
Length = 269
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAG 80
+S+LIT C + +GL+ AL GF V AG
Sbjct: 16 KSVLITGCSSGIGLESALELKRQGFHVLAG 45
>sp|Q92781|RDH1_HUMAN 11-cis retinol dehydrogenase OS=Homo sapiens GN=RDH5 PE=1 SV=1
Length = 318
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 53 ILITSCETALGLQLALHFSSLGFRVFAG-FKPSGGENKSECKSEE 96
+ IT C++ G LAL GFRV A PSG E+ S
Sbjct: 31 VFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSR 75
>sp|Q62730|DHB2_RAT Estradiol 17-beta-dehydrogenase 2 OS=Rattus norvegicus GN=Hsd17b2
PE=2 SV=1
Length = 381
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAGF----KPSGGENKSEC-------KSEESKS 99
+++L+T ++ G LA H LGF VFAG P E + C + + +K
Sbjct: 84 KAVLVTGADSGFGHALAKHLDKLGFTVFAGVLDKEGPGAEELRKNCSERLSVLQMDVTKP 143
Query: 100 DAYKILRAKL-KSCQNHLLSASVNLDDSNVLKVIT----LPLDVTRE---DSLHEAVDII 151
+ K + +++ + Q+ L A VN ++ VL +P+ V R+ + AV++
Sbjct: 144 EQIKDVHSEVAEKIQDKGLWAVVN--NAGVLHFPIDGELIPMTVYRKCMAVNFFGAVEVT 201
Query: 152 RRHLP 156
+ LP
Sbjct: 202 KVFLP 206
>sp|P51658|DHB2_MOUSE Estradiol 17-beta-dehydrogenase 2 OS=Mus musculus GN=Hsd17b2 PE=2
SV=2
Length = 381
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESK 98
+++L+T ++ G LA H LGF VFAG G E + S+
Sbjct: 84 KAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSE 131
>sp|P37059|DHB2_HUMAN Estradiol 17-beta-dehydrogenase 2 OS=Homo sapiens GN=HSD17B2 PE=1
SV=1
Length = 387
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 10 AIQLIALSCIAGALLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALH 69
A+ L+ LS G +L + C + +TY + L V +++L+T + LG L +
Sbjct: 46 AVCLLILSPFWGLILFSVSCFL---MYTYLSGQELLPV-DQKAVLVTGGDCGLGHALCKY 101
Query: 70 FSSLGFRVFAGFKPSGGENKSECK 93
LGF VFAG G E +
Sbjct: 102 LDELGFTVFAGVLNENGPGAEELR 125
>sp|P50233|DHI2_RAT Corticosteroid 11-beta-dehydrogenase isozyme 2 OS=Rattus norvegicus
GN=Hsd11b2 PE=1 SV=1
Length = 400
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFA 79
R++LIT C+T G + A ++GF V A
Sbjct: 83 RAVLITGCDTGFGKETAKKLDAMGFTVLA 111
>sp|P51661|DHI2_MOUSE Corticosteroid 11-beta-dehydrogenase isozyme 2 OS=Mus musculus
GN=Hsd11b2 PE=2 SV=2
Length = 386
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFA 79
R++LIT C+T G + A ++GF V A
Sbjct: 83 RAVLITGCDTGFGKETAKKLDAMGFTVLA 111
>sp|Q6D656|BTUC_ERWCT Vitamin B12 import system permease protein BtuC OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=btuC PE=3 SV=1
Length = 331
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 8 VLAIQLIALSCIAGALLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCET-ALGLQL 66
+L + +++LS IAGALL+ L R+H +T L +G A I+ ++ T A+
Sbjct: 116 LLPVWVLSLSAIAGALLITFLLLHFARRHISNTRL--LLIGIALGIICSAVMTWAVYFST 173
Query: 67 ALHFSSLGFRVFAGFK 82
+L L + + GF
Sbjct: 174 SLDLRQLMYWMMGGFS 189
>sp|P0CN94|GPN3_CRYNJ GPN-loop GTPase 3 homolog CNB04680 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CNB04680 PE=3 SV=1
Length = 287
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 114 NHLLSASVNL-DDSNVLKVITLPLDVTREDSLHEAVDIIRRHLPAGED 160
N L A V+L +D N++ LPLDVT EDS++ + I + GED
Sbjct: 212 NQLNRAVVSLIEDQNIVSF--LPLDVTSEDSVNTVLSHIDNMMQYGED 257
>sp|P0CN95|GPN3_CRYNB GPN-loop GTPase 3 homolog CNBB1090 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CNBB1090 PE=3
SV=1
Length = 287
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 114 NHLLSASVNL-DDSNVLKVITLPLDVTREDSLHEAVDIIRRHLPAGED 160
N L A V+L +D N++ LPLDVT EDS++ + I + GED
Sbjct: 212 NQLNRAVVSLIEDQNIVSF--LPLDVTSEDSVNTVLSHIDNMMQYGED 257
>sp|P80365|DHI2_HUMAN Corticosteroid 11-beta-dehydrogenase isozyme 2 OS=Homo sapiens
GN=HSD11B2 PE=1 SV=2
Length = 405
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 45 LNVGTARSILITSCETALGLQLALHFSSLGFRVFA 79
L V T R++LIT C++ G + A S+GF V A
Sbjct: 78 LPVAT-RAVLITGCDSGFGKETAKKLDSMGFTVLA 111
>sp|Q9SJ61|CDPKP_ARATH Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana
GN=CPK25 PE=2 SV=1
Length = 520
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 100 DAYKILRAKLKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSL--HEAVDIIRR 153
D+ K R K +N L + NLD+S++ ++ +P DV ED++ +E ++ I R
Sbjct: 446 DSGKSGRVTYKELKNGLERFNTNLDNSDINSLMQIPTDVHLEDTVDYNEFIEAIVR 501
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,513,603
Number of Sequences: 539616
Number of extensions: 2010416
Number of successful extensions: 5589
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5574
Number of HSP's gapped (non-prelim): 25
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)