RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11303
(166 letters)
>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid
dehydrogenase type 2 (type 2 17beta-HSD)-like, classical
(c) SDRs. 17beta-hydroxysteroid dehydrogenases are a
group of isozymes that catalyze activation and
inactivation of estrogen and androgens. This
classical-SDR subgroup includes the human proteins: type
2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD,
dehydrogenase/reductase SDR family member 9,
short-chain dehydrogenase/reductase family 9C member 7,
3-hydroxybutyrate dehydrogenase type 1, and retinol
dehydrogenase 5. SDRs are a functionally diverse family
of oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 281
Score = 47.3 bits (113), Expect = 7e-07
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 53 ILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLKSC 112
+LIT C++ G LA SLGF V AG C ++ K LR + C
Sbjct: 3 VLITGCDSGFGNLLAKKLDSLGFTVLAG-----------CLTKN--GPGAKELR---RVC 46
Query: 113 QNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRHLPA 157
S+ L+ TL LDVT+ + + A ++ H+
Sbjct: 47 -------------SDRLR--TLQLDVTKPEQIKRAAQWVKEHVGE 76
>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid
dehydrogenase-like, classical (c) SDRs.
17beta-hydroxysteroid dehydrogenases are a group of
isozymes that catalyze activation and inactivation of
estrogen and androgens. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 248
Score = 43.4 bits (103), Expect = 1e-05
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 33/104 (31%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLK 110
+ +LIT C + +GL LAL ++ G+RV A + KL+
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNP----------------------DKLE 38
Query: 111 SCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRH 154
S L + + L LDVT E+S+ AV +
Sbjct: 39 S-----------LGELLNDNLEVLELDVTDEESIKAAVKEVIER 71
>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional.
Length = 277
Score = 32.7 bits (75), Expect = 0.068
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFA 79
RSILIT C + +G A S G+RVFA
Sbjct: 5 RSILITGCSSGIGAYCARALQSDGWRVFA 33
>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional.
Length = 256
Score = 32.0 bits (73), Expect = 0.094
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAG 80
+S+LIT C + +GL+ AL G+RV A
Sbjct: 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA 32
>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated.
Length = 273
Score = 31.1 bits (71), Expect = 0.18
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 123 LDDSNVLKVITLPLDVTREDSLHEAVDII 151
++D L V L LDVT E S+ AVD I
Sbjct: 40 MEDLASLGVHPLSLDVTDEASIKAAVDTI 68
>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 450
Score = 30.6 bits (70), Expect = 0.32
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 TLPLDVTREDSLHEAVDIIRRHLPAGEDGWDII 165
L LD+T D A I HL G DI+
Sbjct: 260 ALALDITAPD----APARIAEHLAERHGGLDIV 288
>gnl|CDD|236342 PRK08862, PRK08862, short chain dehydrogenase; Provisional.
Length = 227
Score = 29.7 bits (67), Expect = 0.65
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 53 ILITSCETALGLQLALHFSSLG 74
ILITS + LG ++ HF+ LG
Sbjct: 8 ILITSAGSVLGRTISCHFARLG 29
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
Length = 319
Score = 29.2 bits (65), Expect = 0.87
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 1 MDEQTAFVL----AIQLIALSCIAGALLLYLLCKMSRRKHTYDTNFTTLNVGTARSILIT 56
+D TAFVL AI S IAG LL + S + D + VG ++
Sbjct: 234 VDFATAFVLSVVAAISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVGFVIGVIQD 293
Query: 57 SCETALGLQLALHFSSLG 74
SCETAL + F+++
Sbjct: 294 SCETALNSSTDVLFTAVA 311
>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 234
Score = 29.2 bits (66), Expect = 0.88
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 31/103 (30%)
Query: 53 ILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLKSC 112
L+T + +G +A + G +V ++EE+ ++ I
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLA-----------DRNEEALAELAAIEALG---- 45
Query: 113 QNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRHL 155
+ + DV+ E+ + V+
Sbjct: 46 ----------------GNAVAVQADVSDEEDVEALVEEALEEF 72
>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional.
Length = 274
Score = 29.0 bits (65), Expect = 0.99
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 50 ARSILITSCETALGLQLALHFSSLGFRVFA 79
+LIT C + +G LA F + G+ V+A
Sbjct: 1 MPVVLITGCSSGIGRALADAFKAAGYEVWA 30
>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine
esterification of lipoteichoic acid and wall teichoic
acid (D-alanine transfer protein) [Cell envelope
biogenesis, outer membrane].
Length = 245
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 49 TARSILITSCETALGLQLALHFSSLGFRV 77
T +ILIT + +GL LA F LG V
Sbjct: 4 TGNTILITGGASGIGLALAKRFLELGNTV 32
>gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional.
Length = 240
Score = 28.7 bits (64), Expect = 1.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 52 SILITSCETALGLQLALHFSSLGFRVFA 79
++LIT + +G QLAL ++ G++V A
Sbjct: 3 AVLITGATSGIGKQLALDYAKQGWQVIA 30
>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2. Short-chain
dehydrogenases/reductases (SDRs, aka Tyrosine-dependent
oxidoreductases) are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are
approximately 350 residues. Sequence identity between
different SDR enzymes are typically in the 15-30%
range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 228
Score = 28.4 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 49 TARSILITSCETALGLQLALHFSSLGFRV 77
T ++LIT + +GL LA F G V
Sbjct: 4 TGNTVLITGGTSGIGLALARKFLEAGNTV 32
>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional.
Length = 280
Score = 28.1 bits (63), Expect = 2.0
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 28/101 (27%)
Query: 54 LITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLKSCQ 113
++T + GL L + G+ V A + E +
Sbjct: 7 IVTGASSGFGLLTTLELAKKGYLVIATMRNP--EKQEN---------------------- 42
Query: 114 NHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRH 154
LLS + L+ +KV L DVT ++S+H +++
Sbjct: 43 --LLSQATQLNLQQNIKVQQL--DVTDQNSIHNFQLVLKEI 79
>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional.
Length = 270
Score = 28.1 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 53 ILITSCETALGLQLALHFSSLGFRV-FAGFKPSGGE 87
++IT + LG +AL ++ G+R+ A GGE
Sbjct: 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGE 38
>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional.
Length = 283
Score = 28.1 bits (62), Expect = 2.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 58 CETALGLQLALHFSSLGFRVFAGFKP 83
CET G ++A+H + FR+F G +P
Sbjct: 246 CETLDGTRMAIHQAVDAFRLFTGLEP 271
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 654
Score = 27.8 bits (62), Expect = 3.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 129 LKVITLPLDVTREDSLHEAVDIIRRHLPAGED 160
K + PLD D + +AV+I+R ++
Sbjct: 25 AKERSHPLDPLTADEIKQAVEIVRAEADFKKN 56
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 27.6 bits (61), Expect = 3.8
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 6 AFVLAIQLIALSC-IAGALLLYLLCKMSRRK 35
AF+LAI + +A + +L + S RK
Sbjct: 401 AFLLAIICTCAALLVALVVWGCILYRRSNRK 431
>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated.
Length = 238
Score = 27.2 bits (61), Expect = 4.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 119 ASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIR 152
SV +V+ L LDVT S+ A +
Sbjct: 42 ESVTDLGP---RVVPLQLDVTDPASVAAAAEAAS 72
>gnl|CDD|182825 PRK10904, PRK10904, DNA adenine methylase; Provisional.
Length = 271
Score = 27.0 bits (60), Expect = 4.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 148 VDIIRRHLPAGE 159
+D I+RHLP GE
Sbjct: 18 LDDIKRHLPKGE 29
>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9. This subgroup has
the canonical active site tetrad and NAD-binding motif
of the classical SDRs. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 227
Score = 27.0 bits (60), Expect = 4.5
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 32/99 (32%)
Query: 51 RSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLK 110
++I IT + +G + AL F+ G+ V Y I L
Sbjct: 1 KAIFITGAASGIGRETALLFARNGWFV----------------------GLYDIDEDGLA 38
Query: 111 SCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVD 149
+ L NV+ LDVT + A+
Sbjct: 39 ALA-------AELGAENVV---AGALDVTDRAAWAAALA 67
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 27.2 bits (61), Expect = 5.2
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 135 PLDVTREDSLHEAVDIIRRHLPA 157
L VT E+ + A+D +RR LP
Sbjct: 420 ALTVTTEE-IDAAIDALRRALPE 441
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 27.0 bits (60), Expect = 5.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 22 ALLLYLLCKMSRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALHFSSLGFRVFAGF 81
A+L+ L KM RR++ ++ TA++I +T+ G Q A + F +FAG
Sbjct: 77 AVLIDALAKMLRREYGWNI--------TAQNIALTN-----GSQSAFFYL---FNLFAGR 120
Query: 82 KPSGGENK 89
+ G E K
Sbjct: 121 RSDGTEKK 128
>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional.
Length = 257
Score = 26.9 bits (60), Expect = 5.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 49 TARSILITSCETALGLQLALHFSSLGFRVFAG 80
+++ILIT + G ++AL + G V AG
Sbjct: 1 MSKTILITGAGSGFGREVALRLARKGHNVIAG 32
>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains in
the acetoin utilization proteins in bacteria. Acetoin is
a product of fermentative metabolism in many prokaryotic
and eukaryotic microorganisms. They produce acetoin as
an external carbon storage compound and then later reuse
it as a carbon and energy source during their stationary
phase and sporulation. In addition these CBS domains are
associated with a downstream ACT domain, which is linked
to a wide range of metabolic enzymes that are regulated
by amino acid concentration. Pairs of ACT domains bind
specifically to a particular amino acid leading to
regulation of the linked enzyme. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown.
Length = 121
Score = 26.0 bits (58), Expect = 6.2
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 130 KVITLPLDVTREDSLHEAVDIIR----RHLP 156
V+T +T ++ EA++++R RHLP
Sbjct: 2 DVVT----ITPTTTIAEALELMREHKIRHLP 28
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 26.4 bits (58), Expect = 8.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 96 ESKSDAYKILRAKLKSCQN 114
ESK++A KIL L+ CQN
Sbjct: 5 ESKTEALKILGQDLEKCQN 23
>gnl|CDD|235159 PRK03784, PRK03784, vtamin B12-transporter permease; Provisional.
Length = 331
Score = 26.5 bits (59), Expect = 8.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 7 FVLAIQLIALSCIAGALLL-YLLCKMSRRKHTYDTNFTTLNVGTARSILI 55
+L ++L IAGALL+ +L + +RR + T+R +L
Sbjct: 112 GLLPPWALSLCAIAGALLITLILLRFARRHR----------LSTSRLLLA 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.387
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,984,233
Number of extensions: 679646
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 50
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)