RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11303
         (166 letters)



>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
           PSI-biology, NEW YORK structural genomi research
           consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
          Length = 324

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 26/107 (24%)

Query: 49  TARSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAK 108
           + + ILIT   +  G   A   +  G RV+A  +   G N S  ++    +         
Sbjct: 4   SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND----- 58

Query: 109 LKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVD-IIRRH 154
                               + + TL LDV  + S+  A+D II   
Sbjct: 59  --------------------VDLRTLELDVQSQVSVDRAIDQIIGED 85


>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
           alternative binding mode, oxidoreductase; HET: TES;
           1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
           1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
           3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
           3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
          Length = 327

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 30/104 (28%)

Query: 51  RSILITSCETALGLQLALHFSSL---GFRVFAGFKPSGGENKSECKSEESKSDAYKILRA 107
             +LIT C + +GL LA+  +S     F+V+A             +  +++         
Sbjct: 3   TVVLITGCSSGIGLHLAVRLASDPSQSFKVYAT-----------LRDLKTQGR------- 44

Query: 108 KLKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDII 151
                    L  +          + TL LDV    S+  A + +
Sbjct: 45  ---------LWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 49/208 (23%), Positives = 76/208 (36%), Gaps = 64/208 (30%)

Query: 2   DE-----QTAFVLAIQLIALSCIAGALLLYLLCKMSRRKHTYDTNF----------TTLN 46
           +E     QT  VL   LI     +   L  L+      +  +               T +
Sbjct: 171 EELRDLYQTYHVLVGDLIKF---SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227

Query: 47  VGTARSILITSCETALGL-QLALHFS----SLGFR---VFAGFKPSGGENK--------S 90
                SI I SC   +G+ QLA H+      LGF    + +  K + G ++        +
Sbjct: 228 KDYLLSIPI-SC-PLIGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284

Query: 91  ECKSEES----KSDAYKIL-----RAKLKSCQ----NHLLSASVNLDDSNVLKVITLP-- 135
           E  S ES       A  +L     R     C     N  L  S+ L+DS +     +P  
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVR-----CYEAYPNTSLPPSI-LEDS-LENNEGVPSP 337

Query: 136 -L---DVTREDSLHEAVDIIRRHLPAGE 159
            L   ++T+E  + + V+    HLPAG+
Sbjct: 338 MLSISNLTQEQ-VQDYVNKTNSHLPAGK 364



 Score = 29.6 bits (66), Expect = 0.50
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 33/133 (24%)

Query: 15   ALSCIAGAL----LLYLLCKMSR---------RKHTYDTNFTTLNVGTARSILITSCETA 61
            AL+ +A  +    L+ ++    R         R     +N+  + +   R +  +  + A
Sbjct: 1769 ALASLADVMSIESLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGR-VAASFSQEA 1825

Query: 62   LGLQLALHFSSLGFRVF-AGFKPSG------GENKS-ECKSEESKSDAYKILRA-KLKSC 112
            L   +       G+ V    +          G+ ++ +            +L   KL+  
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--------VTNVLNFIKLQKI 1877

Query: 113  QNHLLSASVNLDD 125
                L  S++L++
Sbjct: 1878 DIIELQKSLSLEE 1890


>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
           midwest center for structural genomics, protein
           structure initiative; 2.00A {Streptomyces avermitilis}
          Length = 281

 Score = 33.8 bits (78), Expect = 0.016
 Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 33/106 (31%)

Query: 49  TARSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAK 108
           +A+  L+T   +  G  +A    + G  V                            R  
Sbjct: 4   SAKVWLVTGASSGFGRAIAEAAVAAGDTVIG------------------------TARRT 39

Query: 109 LKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRH 154
                   L   V            + LDVT  + +      +   
Sbjct: 40  EA------LDDLVAAYPDRAE---AISLDVTDGERIDVVAADVLAR 76


>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
           oxidoreductase (SDR family), structural genomics, PSI;
           2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
          Length = 250

 Score = 31.9 bits (73), Expect = 0.060
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 37/118 (31%)

Query: 49  TARSILITSCETALGLQLALHFSSLG--FRVFAGFKPSGGENKSECKSEESKSDAYKILR 106
           +  S+++T     +GL L            + A             +  E  ++      
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIAT-----------ARDVEKATELKS--- 47

Query: 107 AKLKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRHLPAGEDGWDI 164
                           + DS V     LPL VT + SL   V  +   +  G DG  +
Sbjct: 48  ----------------IKDSRV---HVLPLTVTCDKSLDTFVSKVGEIV--GSDGLSL 84


>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
           dinucleotide binding oxidoreductase; HET: NAP; 1.75A
           {Drosophila melanogaster} SCOP: c.2.1.2
          Length = 267

 Score = 30.4 bits (69), Expect = 0.20
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 36/137 (26%)

Query: 32  SRRKHTYDTNFTTLNVGTARSILITSCETALGLQLALHFSSL---GFRVFAGFKPSGGEN 88
           S   H + ++          SILIT C   LGL L     +L      +F          
Sbjct: 3   SSHHHHHHSSGLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTT-------- 54

Query: 89  KSECKSEESKSDAYKILRAKLKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAV 148
              C++ E   +   + +                        +  L +D+   D+  + V
Sbjct: 55  ---CRNREQAKELEDLAKNHSN--------------------IHILEIDLRNFDAYDKLV 91

Query: 149 DIIRRHLPAGEDGWDII 165
             I       + G +++
Sbjct: 92  ADIEGVT--KDQGLNVL 106


>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
           SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
           sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
           3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
           3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
           3ch6_A* 2irw_A* 2ilt_A* ...
          Length = 286

 Score = 29.5 bits (67), Expect = 0.41
 Identities = 10/107 (9%), Positives = 28/107 (26%), Gaps = 37/107 (34%)

Query: 53  ILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKIL----RAK 108
           +++T     +G ++A H + +G  V                          ++    +  
Sbjct: 31  VIVTGASKGIGREMAYHLAKMGAHV--------------------------VVTARSKET 64

Query: 109 LKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRHL 155
           L+   +H L                +   +       + V    + +
Sbjct: 65  LQKVVSHCLELGAA-------SAHYIAGTMEDMTFAEQFVAQAGKLM 104


>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
           LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
          Length = 504

 Score = 28.5 bits (64), Expect = 0.99
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 69  HFSSLGFRVFAGFKPSGGENKSECKSEESKSDAY-KILRAKLKSCQNHLLSASVNLDDSN 127
             +++ F     + P       +      K       ++A +      ++      D +N
Sbjct: 417 EHTNVCFW----YIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKAN 472

Query: 128 VLKVITLPLDVTREDSLHEAVDIIRRH 154
             +++      T+ D +   ++ I R 
Sbjct: 473 FFRMVISNPAATQSD-IDFLIEEIERL 498


>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
           1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
           2nye_A
          Length = 144

 Score = 27.9 bits (63), Expect = 1.0
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 12/62 (19%)

Query: 97  SKSDAYKILRAKLKSCQNHLLSASV----NLDDSNVLKVITLPLDVTREDSLHEAVDIIR 152
              D    +   +K    + LS SV         +   V T     T+ D L   +D IR
Sbjct: 59  EAYD----VLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT----CTKNDKLSTIMDNIR 110

Query: 153 RH 154
           + 
Sbjct: 111 KA 112


>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
           oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
          Length = 311

 Score = 28.4 bits (63), Expect = 1.1
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 30/105 (28%)

Query: 51  RSILITSCETALGLQLALHFSSLGFRVFAGFKPSGGENKSECKSEESKSDAYKILRAKLK 110
           R  ++T     +G ++    SS G  V              C+      +A + L+    
Sbjct: 13  RCAVVTGGNKGIGFEICKQLSSNGIMVVLT-----------CRDVTKGHEAVEKLKN--- 58

Query: 111 SCQNHLLSASVNLDDSNVLKVITLPLDVT-REDSLHEAVDIIRRH 154
                          SN   V+   LDVT    ++    D I+ H
Sbjct: 59  ---------------SNHENVVFHQLDVTDPIATMSSLADFIKTH 88


>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
           genomics, PSI-2, protein structure initiative; 2.30A
           {Aeromonas hydrophila subsp}
          Length = 235

 Score = 26.8 bits (60), Expect = 3.2
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRH 154
            VI +  D+   + +  A       
Sbjct: 50  AVIGIVADLAHHEDVDVAFAAAVEW 74


>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
           1.60A {Thermococcus sibiricus}
          Length = 235

 Score = 26.3 bits (59), Expect = 4.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
           +V    LDV++ +S+ E   
Sbjct: 53  EVFYHHLDVSKAESVEEFSK 72


>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
           unknown function, oxidoreductase, PSI- 2; 2.40A
           {Corynebacterium glutamicum}
          Length = 245

 Score = 26.4 bits (59), Expect = 4.1
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 129 LKVITLPLDVTREDSLHEAVDIIRRH 154
             V  +  D+ +E      VD ++  
Sbjct: 48  EGVEPIESDIVKEVLEEGGVDKLKNL 73


>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
           rossman fold, structural genomics, NPPSFA; 2.40A
           {Thermus thermophilus}
          Length = 234

 Score = 26.3 bits (59), Expect = 4.2
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
             + LP DV  E     AV 
Sbjct: 51  GALPLPGDVREEGDWARAVA 70


>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
           INHA, enoyl acyl carrier reductase, pyrrolid
           carboxamide; HET: NAD 566; 1.62A {Mycobacterium
           tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
           2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
           2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
           3fnh_A* 3oew_A* 2aqh_A* ...
          Length = 269

 Score = 26.4 bits (59), Expect = 4.2
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRHLPAGEDGWDIIL 166
           K   L LDV  E+ L      +   + AG +  D ++
Sbjct: 57  KAPLLELDVQNEEHLASLAGRVTEAIGAG-NKLDGVV 92


>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
           structural genomics, protein structure initiative; 1.87A
           {Rhodopseudomonas palustris}
          Length = 252

 Score = 26.5 bits (59), Expect = 4.3
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRH 154
           +++   LD   ED +   ++    H
Sbjct: 57  RIVARSLDARNEDEVTAFLNAADAH 81


>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
           genomics, PSI-biology, NEW YORK structural genomi
           research consortium; 2.08A {Sinorhizobium meliloti}
          Length = 264

 Score = 26.4 bits (59), Expect = 4.5
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
             +   LDVT   S+     
Sbjct: 54  TALAQVLDVTDRHSVAAFAQ 73


>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
           lactamase inhibitor, AN biosynthesis, NADPH,
           oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
           clavuligerus} PDB: 2jap_A*
          Length = 247

 Score = 26.3 bits (59), Expect = 4.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
           KV  L LDV     +  AV 
Sbjct: 57  KVHVLELDVADRQGVDAAVA 76


>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
           genomics, structural genomics consortium,
           oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
           c.2.1.2
          Length = 279

 Score = 26.4 bits (59), Expect = 5.0
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRHL 155
            +I    D++ E+ +      IR   
Sbjct: 84  TLIPYRCDLSNEEDILSMFSAIRSQH 109


>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
           oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
          Length = 266

 Score = 26.0 bits (58), Expect = 5.5
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
             +   +DVT + +   A+ 
Sbjct: 60  NTLCAQVDVTDKYTFDTAIT 79


>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
           nucleotide-binding, serine/threonine-protei kinase,
           magnesium, CBS domain; HET: AMP; 2.10A {Rattus
           norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
           2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
          Length = 330

 Score = 26.1 bits (57), Expect = 6.6
 Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 97  SKSDAYKILRAKLKSCQNHLLSASVNLDDSNVLKVITLPLDVTREDSLHEAVDIIRRH 154
           SK D   +   K  +  +  ++ ++         V+         ++L   ++ +   
Sbjct: 241 SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----CYLHETLEAIINRLVEA 294


>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
           structural genomics center for infectious DI
           oxidoreductase; 1.85A {Mycobacterium ulcerans}
          Length = 257

 Score = 25.6 bits (57), Expect = 7.4
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRH 154
           +      DVT E ++  A+D+    
Sbjct: 53  RARFAAADVTDEAAVASALDLAETM 77


>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
           structural genomics, seattle structural genomics CEN
           infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
           avium} PDB: 3uwr_A*
          Length = 286

 Score = 25.6 bits (57), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
           +++T  +DV   D+L  AVD
Sbjct: 77  RIVTAEVDVRDYDALKAAVD 96


>2l2f_A Cyanovirin-N homolog; lectin, carbohydrate binding protein, binding
           protein; NMR {Gibberella zeae}
          Length = 108

 Score = 24.9 bits (54), Expect = 7.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 90  SECKSEESKSDAYKILRAKLKSCQNHLLSASVNLDD 125
           S    +    D   +LRA+L       + A+VNL +
Sbjct: 60  SNITLDIEGDDNIPVLRAELNPMDGDPVEANVNLSE 95


>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
           fold, structural genomics, joint center for structural
           genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
           d.37.1.1
          Length = 157

 Score = 25.3 bits (56), Expect = 7.9
 Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 4/25 (16%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRH 154
           K       V  +  + E VD I   
Sbjct: 25  KPTV----VEEDTPIEEIVDRILED 45


>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
           domain, lipid synthesis, fatty acid biosynthesis; HET:
           AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
          Length = 152

 Score = 25.3 bits (56), Expect = 8.3
 Identities = 2/25 (8%), Positives = 8/25 (32%), Gaps = 4/25 (16%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRH 154
            V+         ++L   ++ +   
Sbjct: 102 GVLK----CYLHETLETIINRLVEA 122


>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
           oxidoreductase, PSI-2, protein structure initiative;
           1.90A {Novosphingobium aromaticivorans DSM12444}
          Length = 319

 Score = 25.8 bits (57), Expect = 8.5
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 130 KVITLPLDVTREDSLHEAVDIIRRHLPA 157
           +V+ + LDV   +    A D +      
Sbjct: 60  EVMGVQLDVASREGFKMAADEVEARFGP 87


>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
           regulator, plant CBS domain, thiored chloroplast,
           membrane protein; 1.91A {Arabidopsis thaliana}
          Length = 180

 Score = 25.5 bits (56), Expect = 9.0
 Identities = 3/24 (12%), Positives = 10/24 (41%), Gaps = 4/24 (16%)

Query: 131 VITLPLDVTREDSLHEAVDIIRRH 154
           +      V    S+ +A++++   
Sbjct: 16  LHV----VKPSTSVDDALELLVEK 35


>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
           genomics center for infectious disease, ssgcid,
           nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
          Length = 277

 Score = 25.6 bits (57), Expect = 9.2
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
           +++   +D    D L + VD
Sbjct: 74  RIVAAVVDTRDFDRLRKVVD 93


>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
           {Pseudomonas aeruginosa}
          Length = 272

 Score = 25.7 bits (57), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 130 KVITLPLDVTREDSLHEAVD 149
           +V+ L LDV    ++  AVD
Sbjct: 70  RVLPLTLDVRDRAAMSAAVD 89


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0850    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,343,143
Number of extensions: 119502
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 56
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)