RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11306
(413 letters)
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus
norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A
Length = 260
Score = 279 bits (714), Expect = 7e-93
Identities = 143/254 (56%), Positives = 181/254 (71%), Gaps = 1/254 (0%)
Query: 7 WLNLSLSLVLCYLVVLSSSQNPVERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIASLENV 66
+ + ++ P RFEYKYSFK P+L Q DG+VPFW + GN I S + +
Sbjct: 5 GSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQI 64
Query: 67 RVAPSLRSQKGAIWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFG 126
R+APSL+SQ+G++WTK FE W V++ FRVTGRGRIGADGLA WYT +G DG VFG
Sbjct: 65 RIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQG-LDGPVFG 123
Query: 127 SSDRWKGLGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPY 186
S+D W G+G+FFDSFDND NNP I+ V N+G + +DHQNDGA+Q+LA C RDFRNKPY
Sbjct: 124 SADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPY 183
Query: 187 PTRARIQYYMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADDHDI 246
P RA+I YY TLTV +NG T ++ D E C +VEN+ +P +G+FG+SAATGGLADDHD+
Sbjct: 184 PVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDV 243
Query: 247 LHFLTSSLLPPGAK 260
L FLT L PG +
Sbjct: 244 LSFLTFQLTEPGKE 257
Score = 35.2 bits (80), Expect = 0.028
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 288 QHSQNPVERFEYKYSFKPPYLAQKDG 313
++ P RFEYKYSFK P+L Q DG
Sbjct: 21 TQAELPHRRFEYKYSFKGPHLVQSDG 46
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.52A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A
2a6x_A
Length = 226
Score = 238 bits (609), Expect = 2e-77
Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 19/231 (8%)
Query: 30 ERFEYKYSFKP-PYLAQKDGSVPFWEYGGNCIASLENVRVAPSLRSQKGAIWTKQTTNF- 87
++ YS + + + W G + P ++ KG++W K +
Sbjct: 5 LKWNKGYSLPNLLEVTDQQKELSQWTLGDKVKLEEGRFVLTPG-KNTKGSLWLKPEYSIK 63
Query: 88 EWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGE-VFGSSDRWKGLGLFFDSFDNDNN 146
+ ++ FR G GLAFW E GSS ++ GL + D
Sbjct: 64 DAMTIEWTFRSFGFRGSTKGGLAFWLKQGNEGDSTELFGGSSKKFNGLMILLRLDDKLGE 123
Query: 147 HNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYYMNTLTVWFHNG 206
+ A +NDG D ++ A CL +++ P+ R+ Y N
Sbjct: 124 S----VTAYLNDGTKDLDIESS---PYFASCLFQYQDSMVPSTLRLTYNPL------DNH 170
Query: 207 MTNNEQDIEVCLRVENIYLPKEG--YFGVSAATGGLADDHDILHFLTSSLL 255
+ + D VC + + G SA + +IL +
Sbjct: 171 LLKLQMDNRVCFQTRKVKFMGSSPFRIGTSAINDASKESFEILKMKLYDGV 221
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.42A
{Saccharomyces cerevisiae} SCOP: b.29.1.13
Length = 256
Score = 238 bits (608), Expect = 6e-77
Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 20/263 (7%)
Query: 24 SSQNPVERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIASLENVRVAPSLRSQKGAIWTKQ 83
+ + YS P L W+ G + + + ++ KG++W KQ
Sbjct: 6 GDTSDASKLSSDYSL--PDLINTRKVPNNWQTGEQASLEEGRIVLTSN-QNSKGSLWLKQ 62
Query: 84 TTNFE-WWNVDIVFRVTGRGRIGADGLAFWYTSEKGS-YDGEVFGSSDRWKGLGLFFDSF 141
+ + + ++ FR G G++FW+ + D +++ + GL L D+
Sbjct: 63 GFDLKDSFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDN- 121
Query: 142 DNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYYMNTLTV 201
N P + +NDG D QS A CL +++ P+ R+ Y + +
Sbjct: 122 ---NGPLGPTLRGQLNDGQKPVDKTKIY-DQSFASCLMGYQDSSVPSTIRVTYDLEDDNL 177
Query: 202 WFHNGMTNNEQDIEVCLRVENIYLPKEGY-FGVSAATGGLADDHDILHFLTSSL---LPP 257
+ D +VC + + P Y GV+A G + ++ + +
Sbjct: 178 L------KVQVDNKVCFQTRKVRFPSGSYRIGVTAQNGAVNNNAESFEIFKMQFFNGVIE 231
Query: 258 GAKQQEQVNQEDQKVAQEYAQYE 280
+ K+ +Y +
Sbjct: 232 DSLIPNVNAMGQPKLITKYIDQQ 254
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.00A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A
2a71_A
Length = 222
Score = 234 bits (598), Expect = 8e-76
Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 17/228 (7%)
Query: 30 ERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIASLENVRVAPSLRSQKGAIWTKQTTNFE- 88
+ YS P L W+ G + + + ++ KG++W KQ + +
Sbjct: 5 SKLSSDYSL--PDLINTRKVPNNWQTGEQASLEEGRIVLTSN-QNSKGSLWLKQGFDLKD 61
Query: 89 WWNVDIVFRVTGRGRIGADGLAFWYTSEKGS-YDGEVFGSSDRWKGLGLFFDSFDNDNNH 147
+ ++ FR G G++FW+ + D +++ + GL L D+ N
Sbjct: 62 SFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDN----NGP 117
Query: 148 NNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYYMNTLTVWFHNGM 207
P + +NDG D QS A CL +++ P+ R+ Y + +
Sbjct: 118 LGPTLRGQLNDGQKPVDKTKIY-DQSFASCLMGYQDSSVPSTIRVTYDLEDDNLL----- 171
Query: 208 TNNEQDIEVCLRVENIYLPKEGY-FGVSAATGGLADDHDILHFLTSSL 254
+ D +VC + + P Y GV+A G + ++ +
Sbjct: 172 -KVQVDNKVCFQTRKVRFPSGSYRIGVTAQNGAVNNNAESFEIFKMQF 218
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich,
carbohydrate binding protein, cargo receptor, transport;
HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A
2duq_A* 2duo_A* 2e6v_A*
Length = 253
Score = 235 bits (599), Expect = 1e-75
Identities = 81/252 (32%), Positives = 134/252 (53%), Gaps = 8/252 (3%)
Query: 30 ERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIASLENVRVAPSLRSQKGAIWTKQTTNFEW 89
E + ++S PY S+P W++ G+ I + + VR+ P RS++G+IW Q +
Sbjct: 4 EHLKREHSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFLKD 63
Query: 90 WNVDIVFRVTGRGR--IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFFDSFDNDN-- 145
W + + F+V G G+ + DG+A WYT ++ G VFGS D + GL +F D++ ND
Sbjct: 64 WEMHVHFKVHGTGKKNLHGDGIALWYTRDRL-VPGPVFGSKDNFHGLAIFLDTYPNDETT 122
Query: 146 NHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYYMNTLTVWFHN 205
PYI +VN+G++++DH DG LAGC DFRN+ + T ++Y LTV
Sbjct: 123 ERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDL 182
Query: 206 GMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADDHDILHFLTSSLLPPGAKQQEQV 265
++ + + C+ + + LP YFG SA TG L+D+HDI+ L+ +E +
Sbjct: 183 ---EDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVEHTPDEENI 239
Query: 266 NQEDQKVAQEYA 277
+ + + +
Sbjct: 240 DWTKIEPSVNFL 251
Score = 29.5 bits (65), Expect = 1.7
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 295 ERFEYKYSFKPPYLAQKDG 313
E + ++S PY
Sbjct: 4 EHLKREHSLIKPYQGVGSS 22
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL;
1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A*
1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A*
2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A
2phf_A* 2phr_A* 2pht_A* ...
Length = 261
Score = 59.4 bits (143), Expect = 3e-10
Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 18/201 (8%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFF 138
+W K T F ++ ADG+AF+ + GS+ GL F
Sbjct: 67 LWEKSTNRVANLQTQFSFFLSSPLSNPADGIAFFIAPPDTTIPS---GSAGGLLGL---F 120
Query: 139 DSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLA---GCLRDFRNKPY------PTR 189
+ N N + + + D Q + +R + +
Sbjct: 121 NPRTALNESANQVLAVEFDTFFAQNSNTWDPNYQHIGIDVNSIRSSKVVRWERREGKTLN 180
Query: 190 ARIQYYMNTLTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADDHDILH 248
+ Y +T T+ + ++ + V+ LP+ G SAA+G H++
Sbjct: 181 VLVTYNPSTRTIDVVATYPDGQRYQ-LSHVVDLTTILPEWVRVGFSAASGEQFQTHNLES 239
Query: 249 F-LTSSLLPPGAKQQEQVNQE 268
+ TS+LL K+ E + ++
Sbjct: 240 WSFTSTLLYTAQKEDEYLARD 260
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG;
2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A*
1qoo_A* 1qos_A* 1qot_A*
Length = 242
Score = 54.1 bits (129), Expect = 2e-08
Identities = 42/180 (23%), Positives = 59/180 (32%), Gaps = 18/180 (10%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFF 138
IW T + F V G DGLAF+ GSS GLF
Sbjct: 58 IWDSITGKVASFATSFSFVVKADKSDGVDGLAFFLAPANSQIPS---GSSAGM--FGLFS 112
Query: 139 DSFDNDNNH-----NNPYIMAVVNDGNMAFDH--QNDGASQSLAGCLRDFRNKPYPTRAR 191
S +N + Y N + F H + + +S+ D+RN
Sbjct: 113 SSDSKSSNQIIAVEFDTYFGKAYNPWDPDFKHIGIDVNSIKSIKTVKWDWRNG-EVADVV 171
Query: 192 IQY--YMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLAD--DHDIL 247
I Y +LTV I + ++ LP+ G S G A+ HD+L
Sbjct: 172 ITYRAPTKSLTVCLSYPSDGTSNIITASVDLKA-ILPEWVSVGFSGGVGNAAEFETHDVL 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 63/445 (14%), Positives = 112/445 (25%), Gaps = 158/445 (35%)
Query: 9 NLSLSLVLCYLVVLSSSQNPVERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIASLENVRV 68
L + + S N R + L K NC+ L NV
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--------NCLLVLLNV-- 253
Query: 69 APSLRSQKGAIWTKQTTNFEWWNV-DIVFR--VTGRGRIGADGLAFWYTSEKGSYDGEVF 125
+ WN ++ + +T R + D L+ T+ S D
Sbjct: 254 -----------QNAKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSM 296
Query: 126 GSSDRWKGLGLFFDSFDNDNN-------HNNPYIMAVVNDGNMAFDHQNDGASQSLAGCL 178
+ + L D NP ++++ S +
Sbjct: 297 TLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------------AES------I 337
Query: 179 RDFRNKPYPTRARIQYYMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGY--FGVSAA 236
RD W H IE L V ++ + V
Sbjct: 338 RDGLA-------TWDN-------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--- 380
Query: 237 TGGLADDHDILHFLTSSLLPPGAKQ---QEQVNQEDQKVAQE------------------ 275
F S+ +P + + + V +
Sbjct: 381 ------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 276 ---YAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLA--QKDGYQKDHPDAHPNEEEWYE 330
Y + + KLE + ++ V+ + +F L D Y H H E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--H 486
Query: 331 SENQRELRQIFQGQSQLAEWTKAIATGLDA--LQQKQDRILAVVSQGGGIPHQVVPGQPM 388
E R +F LD L+QK
Sbjct: 487 PERMTLFRMVF----------------LDFRFLEQK------------------------ 506
Query: 389 PMINNDALLASQNSLLSTVQELRYH 413
+ ++ + S+L+T+Q+L+++
Sbjct: 507 -IRHDSTAWNASGSILNTLQQLKFY 530
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding
protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1
Length = 234
Score = 52.5 bits (125), Expect = 5e-08
Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 22/190 (11%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
IW ++T N + F + ADG F+ + G LG+F
Sbjct: 52 IWDRETGNVANFVTSFTFVINAPNSYNVADGFTFFIAPV-DTKPQTGGG------YLGVF 104
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQND------GASQSLAGCLRDFRNKPYPTRAR 191
+ + + +++ + +S+ +N
Sbjct: 105 NSAEYDKTTQTVAVEFDTFYNAAWDPSNRDRHIGIDVNSIKSVNTKSWKLQNG-EEANVV 163
Query: 192 IQYYMNT--LTVWFHNGMTNNEQDIEVCLRVENIYL----PKEGYFGVSAATGGLADDHD 245
I + T LTV + E+++ + + L P+ G SA TG H+
Sbjct: 164 IAFNAATNVLTVSLTYPNNSLEEEVTSYTLSDVVSLKDVVPEWVRIGFSATTGAEYAAHE 223
Query: 246 ILHF-LTSSL 254
+L + S L
Sbjct: 224 VLSWSFHSEL 233
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO
(hydrolase-inhibitor), complex (hydrolase-inhibitor)
comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP:
b.29.1.1 PDB: 1viw_B*
Length = 223
Score = 52.0 bits (124), Expect = 7e-08
Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 36/195 (18%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
I T N ++ + + + A GL F + G+
Sbjct: 51 IRDSTTGNVASFDTNFTMNIRTHRQANSAVGLDFVLVPVQPESKGDTVTVE--------- 101
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYY-- 195
FD + + + H DG RI Y
Sbjct: 102 ---FDTFLSRISIDVNNNDIKSVPWDVHDYDGQ----------------NAEVRITYNSS 142
Query: 196 MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---HDILHF-LT 251
+V N T ++ + +E + G SA +G HD+L + +
Sbjct: 143 TKVFSVSLSNPSTGKSNNVSTTVELEK-EVYDWVSVGFSATSGAYQWSYETHDVLSWSFS 201
Query: 252 SSLLPPGAKQQEQVN 266
S + ++ E+ N
Sbjct: 202 SKFINLKDQKSERSN 216
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins,
lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP:
b.29.1.1
Length = 240
Score = 49.4 bits (117), Expect = 5e-07
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 20/189 (10%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGR-GRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
I K + N +N + F + + I A GLAF + G+
Sbjct: 56 IQIKDSNNVASFNTNFTFIIRAKNQSISAYGLAFALVPVNSP-----PQKKQEFLGI--- 107
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKP-YPTRARIQY-- 194
F+ +N N +AVV + + + DF T +I Y
Sbjct: 108 ---FNTNNPEPNARTVAVVFNTFKNRIDFDKNFIKPYVNENCDFHKYNGEKTDVQITYDS 164
Query: 195 YMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---HDILHF-L 250
N L V+ H ++ + + + +E + + G S +G D HD+L +
Sbjct: 165 SNNDLRVFLHFTVSQVKCSVSATVHLEK-EVDEWVSVGFSPTSGLTEDTTETHDVLSWSF 223
Query: 251 TSSLLPPGA 259
+S +
Sbjct: 224 SSKFRNKLS 232
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG;
2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB:
1gnz_A*
Length = 257
Score = 49.8 bits (118), Expect = 5e-07
Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 20/194 (10%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFF 138
+W +T + + + F + G ADGLAF+ + + LGLF
Sbjct: 60 LWDNKTESVASFYTEFTFFLKITGNGPADGLAFFLAP-----PDSDVKDAGEY--LGLFN 112
Query: 139 DSFDNDNNHNNPYIMAV-----VNDGNMAFDH----QNDGASQSLAGCLRDFRNKPYPTR 189
S + N + N ++ H N S +
Sbjct: 113 KSTATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVSVATKRWEDSDIFSGKIAT 172
Query: 190 ARIQYYMNTLTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADD-HDIL 247
ARI Y + + + I + V+ LP+ G+SA+TG IL
Sbjct: 173 ARISYDGSAEILTVVLSYPDGSDYI-LSHSVDMRQNLPESVRVGISASTGNNQFLTVYIL 231
Query: 248 HF-LTSSLLPPGAK 260
+ +S+L K
Sbjct: 232 SWRFSSNLQSTSVK 245
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC
GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP:
b.29.1.1 PDB: 1lec_A* 1led_A*
Length = 243
Score = 47.9 bits (113), Expect = 2e-06
Identities = 37/184 (20%), Positives = 55/184 (29%), Gaps = 25/184 (13%)
Query: 90 WNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFFDSFDNDNNHNN 149
+ F + G ADGLAF+ S + LGLF + +
Sbjct: 72 FYTSFTFLLKNYGAPTADGLAFFLAPVDSS-----VKDYGGF--LGLFRHE--TAADPSK 122
Query: 150 PYIMAVVNDGNMAFD-----------HQNDGASQSLAGCLRDFRNKPYPTRARIQYY--M 196
++AV D + D N S + D A I Y
Sbjct: 123 NQVVAVEFDTWINKDWNDPPYPHIGIDVNSIVSVATTRWENDDAYGSSIATAHITYDARS 182
Query: 197 NTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADDHDILHFLTSSLLP 256
LTV + + + + LP++ G SA G + IL + S L
Sbjct: 183 KILTVLLSYEHGRD-YILSHVVDLAK-VLPQKVRIGFSAGV-GYDEVTYILSWHFFSTLD 239
Query: 257 PGAK 260
K
Sbjct: 240 GTNK 243
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin;
HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB:
1g8w_A*
Length = 252
Score = 47.5 bits (112), Expect = 2e-06
Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 26/196 (13%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
IW T + F + ADGLAF G + GL
Sbjct: 57 IWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVP-----VGSQPKDKGGFLGL--- 108
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQND------GASQSLAGCLRDFRNKPYPTRAR 191
FD N++ + + N +D + +S+ DF N
Sbjct: 109 ---FDGSNSNFHTVAVEFDTLYNKDWDPTERHIGIDVNSIRSIKTTRWDFVNG-ENAEVL 164
Query: 192 IQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---HDI 246
I Y N L + + +++ LP+ G SA TG + +D+
Sbjct: 165 ITYDSSTNLLVASLVYPSQKTSFIVSDTVDLKS-VLPEWVSVGFSATTGINKGNVETNDV 223
Query: 247 LHF-LTSSLLPPGAKQ 261
L + S L +
Sbjct: 224 LSWSFASKLSDETTSE 239
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP:
b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A*
Length = 253
Score = 45.9 bits (108), Expect = 8e-06
Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 34/196 (17%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRG-RIGADGLAFWYTSEK----------GSYDGEVFGS 127
IW K+T + + F + ADGLAF+ G ++ G
Sbjct: 59 IWDKETGSVASFAASFNFTFYAPDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGD 118
Query: 128 SDRWKGLGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYP 187
F +S+D N H + ++ + ++D N+
Sbjct: 119 QVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNK-----------------V 161
Query: 188 TRARIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD-- 243
+ I Y + L + + ++ LP+ G SAATG
Sbjct: 162 AKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKT-SLPEWVRIGFSAATGLDIPGES 220
Query: 244 HDILHF-LTSSLLPPG 258
HD+L + S+L
Sbjct: 221 HDVLSWSFASNLPHAS 236
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding,
sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC;
2.75A {Maackia amurensis} SCOP: b.29.1.1
Length = 239
Score = 45.9 bits (108), Expect = 8e-06
Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 20/189 (10%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
IW T + ++ F V I +DGLAF+ LGLF
Sbjct: 58 IWGNTTGSVASFSTSFTFVVKAPNPDITSDGLAFYLAPPDSQIPSGSVSK-----YLGLF 112
Query: 138 FDSFDNDNNHN-----NPYIMAVVNDGNMAFDH--QNDGASQSLAGCLRDFRNKPYPTRA 190
+S + +N + Y + + + H + +S+ D+ N A
Sbjct: 113 NNSNSDSSNQIVAVEFDTYFAHSYDPWDPNYRHIGIDVNGIESIKTVQWDWING-GVAFA 171
Query: 191 RIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLAD--DHDI 246
I Y TL + + ++ LP+ G SAATG + HD+
Sbjct: 172 TITYLAPNKTLIASLVYPSNQTTFSVAASVDLKE-ILPEWVRVGFSAATGYPTEVETHDV 230
Query: 247 LHF-LTSSL 254
L + TS+L
Sbjct: 231 LSWSFTSTL 239
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich,
protein-carbohydrate complex, sugar binding protein;
HET: MAN; 1.90A {Bowringia mildbraedii}
Length = 240
Score = 44.1 bits (103), Expect = 3e-05
Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 25/181 (13%)
Query: 90 WNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFFDSFDNDNNHNN 149
+ F ++ AD L F+ S G LGLF S + +++
Sbjct: 69 FETTFTFSISQGSSTPADALTFFIASPDTKIPSGSGGR-----LLGLFGSSNNAGSDNG- 122
Query: 150 PYIMAVVNDG--NMAFDHQND-------GASQSLAGCLRDFRNKPYPTRARIQYY--MNT 198
+++V D N N + +S A D++N A I Y
Sbjct: 123 --VVSVEFDTYPNTDIGDPNYRHIGIDVNSIRSKAASKWDWQNG-KTATAHISYNSASKR 179
Query: 199 LTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADDHDILHF-LTSSLLP 256
L+V N + V VE N P G SA TG ++IL + SSL+
Sbjct: 180 LSVVSSY---PNSSPVVVSFDVELNNVBPBWVRVGFSATTGQYTQTNNILAWSFRSSLMG 236
Query: 257 P 257
Sbjct: 237 Y 237
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal
activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris}
SCOP: b.29.1.1
Length = 226
Score = 43.6 bits (102), Expect = 4e-05
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 18/184 (9%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFF 138
I + N ++ + FR+ + + + GS LGLF
Sbjct: 54 INDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLKGR------YLGLFN 107
Query: 139 DSFDNDNNHNNPYIMAVV-NDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYY-- 195
+ + + H + V N + + A++S + RI Y
Sbjct: 108 TTNYDRDAHTVAVVFDTVSNRIEIDVNSIRPIATESCNFGHNNGE----KAEVRITYDSP 163
Query: 196 MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---HDILHF-LT 251
N L V + + + + +E + G SA +G + H++L + +
Sbjct: 164 KNDLRVSLLYPSSEEKCHVSATVPLEK-EVEDWVSVGFSATSGSKKETTETHNVLSWSFS 222
Query: 252 SSLL 255
S+ +
Sbjct: 223 SNFI 226
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET:
NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP:
b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A*
Length = 253
Score = 43.2 bits (101), Expect = 7e-05
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 18/193 (9%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLFF 138
I+ K T W + + + + GS G LG+F
Sbjct: 56 IYDKSTGAVASWATSFTANIFAPNKSSSADGIAFALVPVGSEPKSNSG------FLGVFD 109
Query: 139 DSFDNDNNHNNPYIMAVVNDGNMAFDHQ----NDGASQSLAGCLRDFRNKPYPTRARIQY 194
+++ ++ + + + + +S+ N I Y
Sbjct: 110 SDVYDNSAQTVAVEFDTFSNTDWDPTSRHIGIDVNSIKSIRTASWGLANG-QNAEILITY 168
Query: 195 Y--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATG---GLADDHDILHF 249
+ L + + + + N LP+ G SA TG G + HD+L +
Sbjct: 169 NAATSLLVASLVHPSRRTSYIVSERVDITN-ELPEYVSIGFSATTGLSEGYTETHDVLSW 227
Query: 250 -LTSSLLPPGAKQ 261
S L +
Sbjct: 228 SFASKLPDDSTTE 240
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein
TN-bindin protein, carbohydrate recognition, sugar
binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa}
SCOP: b.29.1.1
Length = 233
Score = 42.8 bits (100), Expect = 9e-05
Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 29/191 (15%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYD--------GEVFGSSD 129
I T + F + ADGLAF+
Sbjct: 56 IHIHDNTTLASFTTSFSFVMAAPAAAAVADGLAFFLAPPDTQPQARGGFLGLFADRAHDA 115
Query: 130 RWKGLGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTR 189
++ + + FD++ N + N +I N D A
Sbjct: 116 SYQTVAVEFDTYSNAWDPNYTHIGIDTNGIESKKTTPFDMVYGEKA-------------N 162
Query: 190 ARIQY--YMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATG---GLADDH 244
I Y L ++ + + + + LP+ G SA TG G+ + H
Sbjct: 163 IVITYQASTKALAASLVFPVSQTSYAVSARVDLRD-ILPEYVRVGFSATTGLNAGVVETH 221
Query: 245 DILHF-LTSSL 254
DI+ + SL
Sbjct: 222 DIVSWSFAVSL 232
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein
crystallography, group specificity, saccharide free
form; HET: NAG; 2.30A {Psophocarpus tetragonolobus}
SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A*
2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A*
2e7t_A* 2e7q_A*
Length = 242
Score = 42.1 bits (98), Expect = 2e-04
Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 30/185 (16%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGR--GRIGADGLAFWYTSEK-----GSYDGEVFGSSDRW 131
+W T N + F + ADGL F+ G ++ +
Sbjct: 58 VWDSTTGNVASFETRFSFSIRQPFPRPHPADGLVFFIAPPNTQTGEGGGYFGIYNPLSPY 117
Query: 132 KGLGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRAR 191
+ + FD+F N + P+I VN + +A
Sbjct: 118 PFVAVEFDTFRNTWDPQIPHIGIDVNSVISTKTVPFTLDNGGIA-------------NVV 164
Query: 192 IQY--YMNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD------ 243
I+Y L V I + ++ LP+ G SAATG +
Sbjct: 165 IKYDASTKILHVVLVFPSLGTIYTIADIVDLKQ-VLPESVNVGFSAATGDPSGKQRNATE 223
Query: 244 -HDIL 247
HDIL
Sbjct: 224 THDIL 228
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose
specific lectin, SUG binding protein; HET: NAG FUC BMA
MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A*
Length = 242
Score = 41.2 bits (96), Expect = 3e-04
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 25/196 (12%)
Query: 79 IWTKQTTNFEWWNVDIVFRVT--GRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGL 136
IW T + F + + DGL F+ + + GL
Sbjct: 57 IWNCNTGELASFITSFSFFMETSANPKAATDGLTFFLAPPDSPL-----RRAGGY--FGL 109
Query: 137 FFDSFDNDNNHNNPYIMAVVNDGNMAFD--------HQNDGASQSLAGCLRDFRNKPYPT 188
F D+ + + + +D N S + + +
Sbjct: 110 FNDTKCDSSYQTVAVEFDTIGSPVNFWDPGFPHIGIDVNCVKSINAERWNKRYGLN-NVA 168
Query: 189 RARIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATG-GLADDH 244
I Y TLT +++ I V V+ LP+ G S +T G H
Sbjct: 169 NVEIIYEASSKTLTASLTYP--SDQTSISVTSIVDLKEILPEWVSVGFSGSTYIGRQATH 226
Query: 245 DILHF-LTSSLLPPGA 259
++L++ TS+ + +
Sbjct: 227 EVLNWYFTSTFINTNS 242
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary
association, orthorhombic, carbohydrate specificity,
protein crystallography; HET: GAL GLC; 2.15A {Arachis
hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A*
1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A*
1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A*
2dvd_A* 2dvf_A 2dvg_A* ...
Length = 232
Score = 40.5 bits (94), Expect = 5e-04
Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 20/186 (10%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGR-GRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
IW+ T N + F + ADG+ F+ + +G
Sbjct: 54 IWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAP---------EDTQIPAGSIGGG 104
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQN------DGASQSLAGCLRDFRNKPYPTRAR 191
+ + + N ++ D S + +
Sbjct: 105 TLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSVSGAVVKVT 164
Query: 192 IQYYMNTLTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADD-HDILHF 249
+ Y +T T+ N + + V+ LP+ FG SA+ H I +
Sbjct: 165 VIYDSSTKTLSVAVTNDNGDITT-IAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSW 223
Query: 250 -LTSSL 254
TS+L
Sbjct: 224 SFTSTL 229
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly
roll, sugar binding protein; 1.81A {Robinia
pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A*
Length = 237
Score = 39.4 bits (91), Expect = 0.001
Identities = 43/190 (22%), Positives = 63/190 (33%), Gaps = 27/190 (14%)
Query: 72 LRSQKGAIWTKQTTNFEWWNVDIVFRVTGRG-RIGADGLAFWYTSEKGSYDGEVFGSSDR 130
L + IW T N + F + ADGLAF+
Sbjct: 51 LYAAPFQIWDSTTGNVASFVTSFTFIIQAPNPATTADGLAFFLAPVDTQP-----LDLGG 105
Query: 131 WKGLGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDG--------ASQSLAGCLRDFR 182
LG+F D + N +N I+AV D D G + +S+ ++
Sbjct: 106 M--LGIFKDGYFNKSNQ----IVAVEFDTFSNGDWDPKGRHLGINVNSIESIKTVPWNWT 159
Query: 183 NKPYPTRARIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATG-- 238
N I Y +LT I+ + V+ LP+ FG SA TG
Sbjct: 160 NG-EVANVFISYEASTKSLTASLVYPSLETSFIIDAIVDVKI-VLPEWVRFGFSATTGID 217
Query: 239 -GLADDHDIL 247
G +D+L
Sbjct: 218 KGYVQTNDVL 227
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor,
sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP:
b.29.1.1
Length = 133
Score = 36.2 bits (83), Expect = 0.004
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 30/136 (22%)
Query: 138 FDSFDN------DNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRAR 191
FD++ N + H + ++ + +D QN A
Sbjct: 8 FDTYLNPDYGDPNYIHIGIDVNSIRSKVTAKWDWQNG-----------------KIATAH 50
Query: 192 IQYYMNT--LTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADDHDILH 248
I Y + L+V + + + +E + LP+ G+SA+TG + + +
Sbjct: 51 ISYNSVSKRLSVTSYY---AGSKPATLSYDIELHTVLPEWVRVGLSASTGQDKERNTVHS 107
Query: 249 F-LTSSLLPPGAKQQE 263
+ TSSL AK++
Sbjct: 108 WSFTSSLWTNVAKKEN 123
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin,
legume lectin fungal, sugar binding protein; 2.04A
{Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A*
Length = 251
Score = 37.5 bits (86), Expect = 0.005
Identities = 34/204 (16%), Positives = 52/204 (25%), Gaps = 35/204 (17%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGLF 137
IW T + F + ADGLAF+ + D G L
Sbjct: 59 IWDSATGLVASFATSFRFTIYAPNIATIADGLAFFLAPVASAPDS---------GGGFLG 109
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQND-------GASQSLAGCLRDFRNKPYPTRA 190
+ + N F + S+ N +
Sbjct: 110 LFDSAVSGSTYQTVAVEFDTYENTVFTDPPYTHIGFDVNSISSIKTVKWSLANG-EAAKV 168
Query: 191 RIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---HD 245
I Y + L + + + + + LP+ G SAATG HD
Sbjct: 169 LITYNSAVKLLVASLVYPSSKTSFILADIVDLSS-VLPEWVRVGFSAATGASGGKIETHD 227
Query: 246 ILHF-----------LTSSLLPPG 258
+ + SS L G
Sbjct: 228 VFSWSFASKLAGXXTKDSSFLDGG 251
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.008
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 259 AKQQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLAQKD 312
+QE + + + + + +++E+ K +++ + F Q D
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF----------YQQPD 150
Score = 36.3 bits (83), Expect = 0.010
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 261 QQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLAQKDGYQKDHPD 320
Q +++ QE + + + + K+L+E S+ + + K A+KD
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK--------AKKD-------- 119
Query: 321 AHPNEEEWYESENQRELRQIFQGQSQLAEWTKAIATGLDALQQKQDRIL 369
EEW + Q E + + +++A+ KA QQ I+
Sbjct: 120 ----LEEWN--QRQSEQVEKNKINNRIAD--KAF------YQQPDADII 154
Score = 31.7 bits (71), Expect = 0.32
Identities = 9/77 (11%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 260 KQQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLAQKDGYQKDHP 319
+Q++++ + D A + +E ++ ++ +E + Q + +K+
Sbjct: 93 EQRKRLQELD-------AASKVMEQEWREKAKKDLEEW---------NQRQSEQVEKNKI 136
Query: 320 DAHPNEEEWYESENQRE 336
+ ++ +Y+ Q +
Sbjct: 137 NNRIADKAFYQ---QPD 150
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB:
1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B*
1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B*
1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B
Length = 52
Score = 33.3 bits (76), Expect = 0.011
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 224 YLPKEGYFGVSAATGGLADDHDIL 247
+P+ G SA TG H++L
Sbjct: 15 VVPEWVRIGFSATTGAEYAAHEVL 38
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein,
saccharide, protein-carbohydrate interactions, lactose,
glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli}
SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A*
1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A
1uzy_A* 3n35_A* 3n36_A* 3n3h_A*
Length = 239
Score = 35.9 bits (82), Expect = 0.015
Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 26/183 (14%)
Query: 79 IWTKQTTNFEWWNVDIVFRVT--GRGRIGADGLAFWYTSEKGSYDGEVFGSSDRWKGLGL 136
+W T + F + + ADGL F+ K + G+
Sbjct: 59 MWDSTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-----AQGYGYLGV-- 111
Query: 137 FFDSFDNDNNHNNPYIMAVVNDGNMAFDHQND-------GASQSLAGCLRDFRNKPYPTR 189
+ +N + N Q + +
Sbjct: 112 --FNNSKQDNSYQTLAVEFDTFSNPWDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVA--N 167
Query: 190 ARIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGGLADD---H 244
I+Y L V + I + V+ LP G+S ATG D H
Sbjct: 168 VVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQ-VLPDWVDVGLSGATGAQRDAAETH 226
Query: 245 DIL 247
D+
Sbjct: 227 DVY 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.026
Identities = 45/244 (18%), Positives = 75/244 (30%), Gaps = 82/244 (33%)
Query: 213 DIEVCLRVENIYLPKEGYFGVS-----------AATGGLADDHDI----------LHFLT 251
+E L V P +F S T G A D + L +++
Sbjct: 15 SLEHVLLV-----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 252 SSLLPPGAKQQEQVNQEDQKVAQEYAQYEKK-LEEQKQHS-------QNPVERFEYKYSF 303
S + + +V Q DQ + ++E LE H+ +N + K
Sbjct: 70 SLV------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 304 KPPYLAQ---KDGYQKDHP----------DAHP--------NEEEWYESENQRELRQIFQ 342
K A+ K + K +A N ++++E ELR ++Q
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDLYQ 178
Query: 343 -GQSQLAEWTKAIATGLDALQQKQDRILAVVSQGGGI------PHQVVPGQP-------- 387
+ + K A L L + V +QG I P P +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPIS 237
Query: 388 MPMI 391
P+I
Sbjct: 238 CPLI 241
Score = 32.3 bits (73), Expect = 0.37
Identities = 52/370 (14%), Positives = 97/370 (26%), Gaps = 166/370 (44%)
Query: 170 ASQSLAGCLRD-F-RNKPYPTRARIQYYMNTLTVWFHNGMTNNEQ--DIEVCLRVENIYL 225
ASQ L++ F + P PT ++E E+ + +L
Sbjct: 30 ASQ-----LQEQFNKILPEPTEGFAA---------------DDEPTTPAELVGK----FL 65
Query: 226 PKEGYFG--VSAATGGLADD----------HDIL-----HFLTSSLLPPGAKQQEQVNQE 268
GY V + G D + L H L + LL +
Sbjct: 66 ---GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT--- 119
Query: 269 DQKVAQEY--AQYEKKLEEQKQHS--------------------Q-NPVERFE-----YK 300
+++ + Y A+ K K+ + Q N + FE Y+
Sbjct: 120 -KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 301 -YSFKPPYLAQ-------------------KDGYQK--------DHPDAHPNEE------ 326
Y + + + + ++P P+++
Sbjct: 179 TY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 327 -----------EWYE------SENQRELRQIFQGQSQLAEWT---KAIATGL--DALQQK 364
Y ELR +G + ++ AIA ++
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 365 QDRILAVVSQGGGIPHQVVP-----------------GQPMPMINNDALLA----SQNSL 403
+ + V+ G ++ P G P PM L+ +Q +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQV 349
Query: 404 LSTVQELRYH 413
V + H
Sbjct: 350 QDYVNKTNSH 359
Score = 30.4 bits (68), Expect = 1.3
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 52/163 (31%)
Query: 301 YSFKPP----YLAQ--KDGYQKDHPDAHPNEEEWYESE--NQRELRQIFQG-------QS 345
+ P ++A ++ + K P+ P E + E EL F G S
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 346 QLAEWTKAIATGLDALQQ---KQDRILAVVSQGGGIPHQVVP----------------GQ 386
++ ++ + + L + + + I A+ ++ + +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 387 PMPMINNDALLAS--------------QNSLLSTVQELR--YH 413
P +N AL + Q + +ELR Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein;
HET: NAG; 2.00A {Lotus tetragonolobus}
Length = 234
Score = 35.1 bits (80), Expect = 0.027
Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 25/195 (12%)
Query: 79 IWTKQTTNFEWWNVDIVFRVTGRGR-IGADGLAFWYTSEK----GSYDGEVFGSSDRWKG 133
IW T N + F V+ R DG+ F+ + G G +D
Sbjct: 51 IWDSATGNVASFITSFSFIVSNVQRYPPTDGVVFFLAPWGTEIPPNSQGGYLGITDSSNS 110
Query: 134 ----LGLFFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTR 189
+ + FDS N + + + D N + SL + +
Sbjct: 111 QNQFVAVEFDSHPNVWDPKSLRSSHIGIDVN---------SIMSLKAVNWNRVSGSLEK- 160
Query: 190 ARIQYY--MNTLTVWFHNGMTNNEQDIEVCLRVENIYLPKEGYFGVSAATGG-LADDHDI 246
A I Y LTV + I + ++ + P++ G SA T + HDI
Sbjct: 161 ATIIYDSDTKILTVVMTHQNGQI-TTISQEIDLKTVL-PEKVSVGFSATTWNPERERHDI 218
Query: 247 LHF-LTSSLLPPGAK 260
+ TS+L P +
Sbjct: 219 YSWSFTSTLKEPEEQ 233
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis}
SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A
1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A
1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ...
Length = 237
Score = 31.0 bits (69), Expect = 0.56
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 138 FDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYY-- 195
D++ N + + Y ++ ++ +S + +N A I Y
Sbjct: 9 LDTYPNTDIGDPSYPHIGIDIKSV----------RSKKTAKWNMQNG-KVGTAHIIYNSV 57
Query: 196 MNTLTVWFHNGMTNNEQDIEVCLRVE-NIYLPKEGYFGVSAATGGLADDHDIL 247
L+ N V V+ + LP+ G+SA+TG + + IL
Sbjct: 58 DKRLSAVVS---YPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTIL 107
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 31.1 bits (71), Expect = 0.72
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 259 AKQQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYL-AQKDG---Y 314
+++ Q +KV + + Q E+K + NP F Y P L Q++ +
Sbjct: 332 EQEKAWRKQSRRKVMEAFEQAERKPK------PNPNLLFSDVYQEMPAQLRKQQESLARH 385
Query: 315 QKDHPDAHPNEE 326
+ + + +P +
Sbjct: 386 LQTYGEHYPLDH 397
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 30.0 bits (66), Expect = 0.84
Identities = 18/110 (16%), Positives = 41/110 (37%)
Query: 261 QQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLAQKDGYQKDHPD 320
+V D K A+E + ++ LE+Q++ + ++ + Y + + +
Sbjct: 40 NAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELE 99
Query: 321 AHPNEEEWYESENQRELRQIFQGQSQLAEWTKAIATGLDALQQKQDRILA 370
E + R+ + + +L E KA+ +D Q +R
Sbjct: 100 EKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANV 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 35/56 (62%)
Query: 268 EDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYLAQKDGYQKDHPDAHP 323
E Q + KKL+ S K Y D+ P
Sbjct: 18 EKQAL--------KKLQA----------------SLKL--------YA---DDSAP 38
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC;
1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB:
1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A*
1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Length = 516
Score = 29.3 bits (65), Expect = 2.7
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 32 FEYKYSFKPPYLAQKDGSVPFWEYGGN 58
E+K ++ KDG+V W+
Sbjct: 479 IEFKA-----FIKSKDGTVKSWQTIQQ 500
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J*
1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J*
1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H*
1giy_P ...
Length = 157
Score = 28.0 bits (62), Expect = 3.4
Identities = 6/46 (13%), Positives = 8/46 (17%)
Query: 175 AGCLRDFRNKPYPTRARIQYYMNTLTVWFHNGMTNNEQDIEVCLRV 220
R+ Y R I F G +
Sbjct: 3 GAHFRNSIKPAYTRREYISGIPGKGIAQFKMGNNGAGPTYPAQVEN 48
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 259 AKQQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERFEYKYSFKPPYL-AQKD 312
+ Q + + V + E+ H + FE Y P +L Q+
Sbjct: 351 EEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQ 405
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 27.8 bits (61), Expect = 5.5
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 175 AGCLRDFRNKPYPTRARIQYYMNTLTVWFHNGMTNNEQD 213
A C R +NKPYP + ++ + G D
Sbjct: 4 ARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVD 42
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.6 bits (60), Expect = 5.7
Identities = 5/39 (12%), Positives = 19/39 (48%)
Query: 259 AKQQEQVNQEDQKVAQEYAQYEKKLEEQKQHSQNPVERF 297
+QE + + + + + +++E+ K +++ + F
Sbjct: 122 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 27.8 bits (61), Expect = 7.0
Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 9/138 (6%)
Query: 30 ERFEYKYSFKPPYLAQKDGSVPFWEYGGNCIA---SLENVRVAPSLRSQKGAIWTKQTTN 86
E + P + Q DG+V G N I E + ++P + I + +N
Sbjct: 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229
Query: 87 FEWWNVDIVFRVTGRG-RIGADGLAFWYTSEKGS-YDGEVFGSS-DRWKGLGLFFDSFDN 143
+ + ++ ++ + DG++ + + Y G++ S+ +
Sbjct: 230 LQLTDAELGSKIERYSEKPICDGISI---DKDHNIYVGDLAHSAIGVITSADRAYKLLVT 286
Query: 144 DNNHNNPYIMAVVNDGNM 161
D + +DG +
Sbjct: 287 DEKLSWTDSFNFGSDGYL 304
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 7.2
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 139 DSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQSLAGCLRDFRNKPYPTRARIQYYMNT 198
+ F+ N I V+ + ++ AS+ A F+++ + I T
Sbjct: 910 ELFNGYNPEKKEMIQEVIVEEDLEPFE----ASKETA---EQFKHQH-GDKVDIFEIPET 961
Query: 199 LTVW 202
Sbjct: 962 GEYS 965
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 27.3 bits (61), Expect = 7.9
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 137 FFDSFDNDNNHNNPYIMAVVNDGNMAFDHQNDGASQ 172
F D + ++ I+++ + G + N SQ
Sbjct: 87 FDDEIYPELKYDRRGILSMASKGASKKPNTN--GSQ 120
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 27.4 bits (60), Expect = 8.0
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 175 AGCLRDFRNKPYPTRARIQYYMNTLTVWFHNGMTNNEQD 213
A C R +NKPYP + + F G + D
Sbjct: 6 ARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVD 44
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
(helicase/DNA), DNA unwinding, hydrolase/DNA complex;
HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
c.37.1.19
Length = 673
Score = 27.5 bits (62), Expect = 9.0
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 254 LLPPGAKQQEQVNQEDQKVAQEYAQYEKKLEE 285
L P + + D+ A Y Y+ L+
Sbjct: 146 LKTPSQAAASAIGERDRIFAHCYGLYDAHLKA 177
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 26.9 bits (59), Expect = 9.0
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 7/34 (20%)
Query: 179 RDFRNKPYPTRARI-------QYYMNTLTVWFHN 205
R F P+ I + VWF N
Sbjct: 104 RHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.414
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,419,383
Number of extensions: 378794
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 68
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)