BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1131
(353 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 151/157 (96%), Positives = 156/157 (99%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M+ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMYELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/85 (97%), Positives = 85/85 (100%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M+ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MYELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 150/157 (95%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGDLVIFNR
Sbjct: 394 KMLELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 549
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGDLVIFNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/162 (94%), Positives = 158/162 (97%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F M+ +M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL
Sbjct: 391 FNMD-KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 449
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
VIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV
Sbjct: 450 VIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 509
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 510 ENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/85 (97%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 392 KMMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+DK
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIDK 548
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 436 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+D
Sbjct: 496 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFID 547
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 393 MMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTFRMNL 477
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/156 (94%), Positives = 154/156 (98%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQ 454
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+T
Sbjct: 455 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHIT 514
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+K
Sbjct: 515 PRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLEK 550
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLV+FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLE 549
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRVRVLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVRVLPWSTFRMNL 479
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/156 (94%), Positives = 154/156 (98%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQ 454
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+T
Sbjct: 455 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHIT 514
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+K
Sbjct: 515 PRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLEK 550
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLV+FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFLE 549
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRVRVLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVRVLPWSTFRMNL 479
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNR
Sbjct: 394 QMLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 454 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 550
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLV+FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIE 549
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLV+FNRQ
Sbjct: 395 MLELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRVRVLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVRVLPWSTFRMNL 479
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 394 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 395 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHP+PSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHP+PSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLVIFNR
Sbjct: 394 KMMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLVIFNRQ
Sbjct: 395 MMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHP+PSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 396 KMQELVRRGNSQYPGAKYIIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNR 455
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 456 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 515
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 516 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLDQ 552
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 440 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 500 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLD 551
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHP+PSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 397 MQELVRRGNSQYPGAKYIIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQ 456
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 457 PTLHKMSMMGHRVKVLPWSTFRMNL 481
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 150/157 (95%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 394 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 549
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 395 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLVIFNR
Sbjct: 393 KMMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI+DGDLVIFNRQ
Sbjct: 394 MMELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH PQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 APQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH PQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 APQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 150/157 (95%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 390 KMLELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 449
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+
Sbjct: 450 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHI 509
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 510 TPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFINK 546
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 434 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 493
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++
Sbjct: 494 VPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIN 545
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 391 MLELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 450
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 451 PTLHKMSMMGHRVKVLPWSTFRMNL 475
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 150/157 (95%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 150/157 (95%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 375 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNR 434
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 435 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 494
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 495 TPRQIITPQANQPVMGIVQDTLTAVRKMTKRDVFLEK 531
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 419 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 478
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 479 VPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVRKMTKRDVFLE 530
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 376 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQ 435
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 436 PTLHKMSMMGHRVKVLPWSTFRMNL 460
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 396 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 455
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 456 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 515
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 516 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 552
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 440 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 500 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 551
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 397 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 456
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 457 PTLHKMSMMGHRVKVLPWSTFRMNL 481
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 393 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 549
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 497 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 548
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 392 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 436 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 496 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 547
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 393 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTFRMNL 477
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERH+RDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERH+RDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 396 KMHELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 455
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 456 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 515
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 516 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 552
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 440 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 500 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 551
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 397 MHELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 456
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 457 PTLHKMSMMGHRVKVLPWSTFRMNL 481
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 392 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 436 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 496 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 547
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 393 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTFRMNL 477
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 373 KMQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 432
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 433 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 492
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 493 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 529
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 417 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 476
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 477 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 528
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 374 MQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 433
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 434 PTLHKMSMMGHRVKVLPWSTFRMNL 458
>gi|31127010|gb|AAF26623.2|AF138973_1 RNA polymerase II largest subunit [Ctenolepisma lineata]
Length = 624
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 40 KMLDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 160 TPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 196
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 84 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 41 MLDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNLSV 127
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERHIRDGDLVIFNR
Sbjct: 394 KMLELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQWGYKVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 514 TPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 550
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 112/112 (100%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENLHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 549
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERHIRDGDLVIFNRQ
Sbjct: 395 MLELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQWGYKVERHIRDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNLSV 482
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV RGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMKELVHRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLDK 551
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/112 (96%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 499 VPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLD 550
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MKELVHRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 395 KMQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 396 MQDLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNLSV 482
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 155/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGN++YPGAKYIVRDNG+RIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 392 KMQELVRRGNTRYPGAKYIVRDNGDRIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 548
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 436 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 496 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 547
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 84/85 (98%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN++YPGAKYIVRDNG+RIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 393 MQELVRRGNTRYPGAKYIVRDNGDRIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTFRMNL 477
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 149/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 397 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNR 456
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 457 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 516
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 517 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 553
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 441 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 500
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 501 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 552
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 398 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 457
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 458 PTLHKMSMMGHRVKVLPWSTFRMNLSV 484
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RDGDLVIFNR
Sbjct: 395 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+EN+H+
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENLHI 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+EN+H+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEIENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RDGDLVIFNRQ
Sbjct: 396 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 394 RMQKLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 395 MQKLVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERH+RDGDLVIFNR
Sbjct: 376 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDLVIFNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 436 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 496 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 532
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 420 RVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 479
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 480 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 531
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERH+RDGDLVIFNRQ
Sbjct: 377 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDLVIFNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 437 PTLHKMSMMGHRVKVLPWSTFRMNLSV 463
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 372 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 431
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+HV
Sbjct: 432 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHV 491
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 492 TPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEK 528
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 416 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 475
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+HVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 476 VPQSMETRAEVENLHVTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLE 527
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 373 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 432
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 433 PTLHKMSMMGHRVKVLPWSTFRMNL 457
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 391 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+ENIH+
Sbjct: 451 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHI 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 511 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 547
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 435 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 495 VPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 546
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 452 PTLHKMSMMGHRVKVLPWSTFRMNL 476
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV RGNSQYPGAKYI+R+NGERIDLRFHPKPSDLH+QCGYKVERHIRDGDLVIFNR
Sbjct: 390 KMMELVHRGNSQYPGAKYIIRENGERIDLRFHPKPSDLHIQCGYKVERHIRDGDLVIFNR 449
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCT+PYNADFDGDEMNLHVPQSMETRAEVE++H+
Sbjct: 450 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTTPYNADFDGDEMNLHVPQSMETRAEVEHLHI 509
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 510 TPRQIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEK 546
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCT+PYNADFDGDEMNLH
Sbjct: 434 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTTPYNADFDGDEMNLH 493
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVE++H+TPRQIITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 494 VPQSMETRAEVEHLHITPRQIITPQANRPVMGIVQDTLTAVRKMTKRDVFLE 545
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RGNSQYPGAKYI+R+NGERIDLRFHPKPSDLH+QCGYKVERHIRDGDLVIFNRQ
Sbjct: 391 MMELVHRGNSQYPGAKYIIRENGERIDLRFHPKPSDLHIQCGYKVERHIRDGDLVIFNRQ 450
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 451 PTLHKMSMMGHRVKVLPWSTFRMNL 475
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 391 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+ENIH+
Sbjct: 451 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHI 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 511 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 547
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 435 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 495 VPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 546
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 452 PTLHKMSMMGHRVKVLPWSTFRMNL 476
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 392 KMSELVQRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+
Sbjct: 452 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHI 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 548
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 436 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++
Sbjct: 496 VPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIE 547
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 393 MSELVQRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTFRMNL 477
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 397 KMSELVQRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNR 456
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+
Sbjct: 457 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHI 516
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++K
Sbjct: 517 TPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIEK 553
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 441 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 500
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+H+TPRQIITPQ N+PVMGIVQDTLTA+RKMTKRDVF++
Sbjct: 501 VPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFIE 552
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 398 MSELVQRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQ 457
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 458 PTLHKMSMMGHRVKVLPWSTFRMNL 482
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHI+D DLVIFNR
Sbjct: 393 KMIELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIKDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/112 (91%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+D DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIKDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVEN+H+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY+VERHI+D DLVIFNRQ
Sbjct: 394 MIELVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIKDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/157 (94%), Positives = 154/157 (98%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 374 QMQDLVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 530
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/112 (95%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 418 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 478 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 529
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV+RGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 375 MQDLVQRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNLSV 461
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 393 KMQVLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 549
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 497 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 548
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNRQPTL
Sbjct: 397 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTL 456
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHRV+VLPWSTFRMNL
Sbjct: 457 HKMSMMGHRVKVLPWSTFRMNL 478
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 394 KMQVLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNRQPTL
Sbjct: 398 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTL 457
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHRV+VLPWSTFRMNL
Sbjct: 458 HKMSMMGHRVKVLPWSTFRMNL 479
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 394 KMQVLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNRQPTL
Sbjct: 398 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTL 457
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHRV+VLPWSTFRMNL
Sbjct: 458 HKMSMMGHRVKVLPWSTFRMNL 479
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 391 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+ENIH+
Sbjct: 451 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHI 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 511 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 547
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 435 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 495 VPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 546
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 452 PTLHKMSMMGHRVKVLPWSTFRMNL 476
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 391 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+ENIH+
Sbjct: 451 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHI 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 511 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 547
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 435 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 495 VPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 546
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 452 PTLHKMSMMGHRVKVLPWSTFRMNL 476
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNR
Sbjct: 394 KMQVLVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEK 550
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 111/112 (99%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 498 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIE 549
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 81/82 (98%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGY+VERHIRDGDLVIFNRQPTL
Sbjct: 398 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTL 457
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHRV+VLPWSTFRMNL
Sbjct: 458 HKMSMMGHRVKVLPWSTFRMNL 479
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 315 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 374
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 375 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 434
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 435 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 471
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 359 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 419 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 469
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 316 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 375
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 376 PTLHKMSMMGHRVKVLPWSTFRMNL 400
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 386 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 446 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 506 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 430 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 489
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 490 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 540
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 387 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 447 PTLHKMSMMGHRVKVLPWSTFRMNL 471
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYI+R+NG+RIDLRFHPK SDLHLQCGYKVERHIRDGDLV+FNR
Sbjct: 395 KMQELVQRGNSQYPGAKYIIRENGDRIDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 551
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/112 (94%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLV+FNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHIRDGDLVVFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLE 550
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 83/85 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYI+R+NG+RIDLRFHPK SDLHLQCGYKVERHIRDGDLV+FNRQ
Sbjct: 396 MQELVQRGNSQYPGAKYIIRENGDRIDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 386 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 446 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 506 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 430 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 489
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 490 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 540
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 387 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 447 PTLHKMSMMGHRVKVLPWSTFRMNL 471
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERH+RD DLVIFNR
Sbjct: 391 RMQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 451 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL K
Sbjct: 511 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTK 547
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/111 (94%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 435 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL
Sbjct: 495 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFL 545
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERH+RD DLVIFNRQ
Sbjct: 392 MQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 452 PTLHKMSMMGHRVKVLPWSTFRMNL 476
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 386 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 446 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 506 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 542
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 430 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 489
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 490 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 540
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 387 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 447 PTLHKMSMMGHRVKVLPWSTFRMNL 471
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 145/157 (92%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNG+RIDLRFHPK SDLHLQCGYKVERH+ DGDLVIFNR
Sbjct: 395 KMQELVQRGNSQYPGAKYIVRDNGDRIDLRFHPKTSDLHLQCGYKVERHVGDGDLVIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 515 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 551
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 439 KVERHVGDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 499 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 550
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/85 (91%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNG+RIDLRFHPK SDLHLQCGYKVERH+ DGDLVIFNRQ
Sbjct: 396 MQELVQRGNSQYPGAKYIVRDNGDRIDLRFHPKTSDLHLQCGYKVERHVGDGDLVIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 456 PTLHKMSMMGHRVKVLPWSTFRMNL 480
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERH+RD DLVIFNR
Sbjct: 386 RMQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 446 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL K
Sbjct: 506 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTK 542
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/111 (94%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 430 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 489
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL
Sbjct: 490 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFL 540
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYIVRDNGERIDLRFHPKPSDLHLQ GYKVERH+RD DLVIFNRQ
Sbjct: 387 MQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 447 PTLHKMSMMGHRVKVLPWSTFRMNL 471
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/157 (92%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE ENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEAENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/111 (92%), Positives = 108/111 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAE ENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEAENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/157 (92%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM EL RRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 374 RMQELARRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 530
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 418 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 478 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 81/85 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL RRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 375 MQELARRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNL 459
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNG+RIDLR+HPK SDLHLQCGYKVERH+ DGDLVIFNR
Sbjct: 394 KMQELVQRGNSQYPGAKYIVRDNGDRIDLRYHPKTSDLHLQCGYKVERHVGDGDLVIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 514 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/112 (93%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 438 KVERHVGDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 549
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNG+RIDLR+HPK SDLHLQCGYKVERH+ DGDLVIFNRQ
Sbjct: 395 MQELVQRGNSQYPGAKYIVRDNGDRIDLRYHPKTSDLHLQCGYKVERHVGDGDLVIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNL 479
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNR
Sbjct: 375 KMQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNR 434
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 435 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 494
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 495 TARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 531
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIR+GDL+IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 419 KVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 478
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 479 VPQSMETRAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 530
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNRQ
Sbjct: 376 MQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQ 435
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 436 PTLHKMSMMGHRVKVLPWSTFRMNLSV 462
>gi|31127038|gb|AAF26658.2|AF139008_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
Length = 636
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGN+QYPGAKYI+RDNGERIDLR+HPKPSDLHLQCGYKVERHIRDGDLVIFNR
Sbjct: 52 KMQELVRRGNAQYPGAKYIIRDNGERIDLRYHPKPSDLHLQCGYKVERHIRDGDLVIFNR 111
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS T+PYNADFDGDEMNLHVPQSMETRAE+ENIHV
Sbjct: 112 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIENIHV 171
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 172 TPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 208
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 96 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLH 155
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 156 VPQSMETRAEIENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLE 207
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/87 (91%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYI+RDNGERIDLR+HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
Sbjct: 53 MQELVRRGNAQYPGAKYIIRDNGERIDLRYHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 112
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 113 PTLHKMSMMGHRVKVLPWSTFRMNLSV 139
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNR
Sbjct: 375 KMQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNR 434
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 435 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 494
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 495 TARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 531
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIR+GDL+IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 419 KVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 478
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 479 VPQSMETRAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 530
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNRQ
Sbjct: 376 MQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQ 435
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 436 PTLHKMSMMGHRVKVLPWSTFRMNLSV 462
>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
Length = 722
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 153/157 (97%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNR
Sbjct: 40 KMQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 160 TXRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 196
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIR+GDL+IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 84 KVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEVENIHITXRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHIR+GDL+IFNRQ
Sbjct: 41 MQDLVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNLSV 127
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/156 (92%), Positives = 153/156 (98%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LVRRGNSQYPGAKYIVRDNGERIDLR+HPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 378 MQDLVRRGNSQYPGAKYIVRDNGERIDLRYHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 437
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHVT
Sbjct: 438 PTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 497
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++K
Sbjct: 498 PRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEK 533
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 421 RVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 480
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++
Sbjct: 481 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIE 532
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/87 (91%), Positives = 85/87 (97%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGNSQYPGAKYIVRDNGERIDLR+HPKPSDLHLQCGY+VERHIRDGDLVIFNRQ
Sbjct: 378 MQDLVRRGNSQYPGAKYIVRDNGERIDLRYHPKPSDLHLQCGYRVERHIRDGDLVIFNRQ 437
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 438 PTLHKMSMMGHRVKVLPWSTFRMNLSV 464
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 143/157 (91%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDL+IFNR
Sbjct: 374 KMQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMN+H+PQSMETRAEVENIH+
Sbjct: 434 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNMHIPQSMETRAEVENIHI 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 494 TTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 530
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDL+IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMN+H
Sbjct: 418 KVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNMH 477
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQSMETRAEVENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 478 IPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 529
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/87 (91%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERHIRDGDL+IFNRQ
Sbjct: 375 MQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 435 PTLHKMSMMGHRVKVLPWSTFRMNLSV 461
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/156 (92%), Positives = 152/156 (97%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELVRRGNSQYPGAKYIVRDNGERIDLR+HPK SDLHLQCGY+VERHI+DGDLVIFNRQ
Sbjct: 399 MQELVRRGNSQYPGAKYIVRDNGERIDLRYHPKSSDLHLQCGYRVERHIKDGDLVIFNRQ 458
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIHVT
Sbjct: 459 PTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 518
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++K
Sbjct: 519 PRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEK 554
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 110/112 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 442 RVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIHVTPRQIITPQ N+PVMGIVQDTLTAVRKMT+RDVF++
Sbjct: 502 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIE 553
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLR+HPK SDLHLQCGY+VERHI+DGDLVIFNRQ
Sbjct: 399 MQELVRRGNSQYPGAKYIVRDNGERIDLRYHPKSSDLHLQCGYRVERHIKDGDLVIFNRQ 458
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 459 PTLHKMSMMGHRVKVLPWSTFRMNLSV 485
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/157 (91%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDN ERIDLRFHPK SDLHLQCGYKVERHIRDGDL+IFNR
Sbjct: 394 KMQELVRRGNSQYPGAKYIIRDNDERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 454 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 514 TTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEK 550
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/112 (92%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRDGDL+IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 438 KVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+T RQIITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 498 VPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 549
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDN ERIDLRFHPK SDLHLQCGYKVERHIRDGDL+IFNRQ
Sbjct: 395 MQELVRRGNSQYPGAKYIIRDNDERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 455 PTLHKMSMMGHRVKVLPWSTFRMNLSV 481
>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
Length = 624
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/159 (89%), Positives = 152/159 (95%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGN+QYPGAKYIVRDNG RIDLR+HPKPSDLHLQCGYKVERHI DGDLVIFNR
Sbjct: 40 KMMELVKRGNNQYPGAKYIVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+EN+HV
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHV 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
TPR IITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+K E
Sbjct: 160 TPRMIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKHE 198
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 108/112 (96%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 84 KVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+EN+HVTPR IITPQ N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIENLHVTPRMIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGN+QYPGAKYIVRDNG RIDLR+HPKPSDLHLQCGYKVERHI DGDLVIFNRQ
Sbjct: 41 MMELVKRGNNQYPGAKYIVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNLSV 127
>gi|31127024|gb|AAF26639.2|AF138989_1 RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 624
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/157 (89%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAK+I+RDNG+RIDLRF+PK SDLHLQCGYKVERH+ DGDLV+FNR
Sbjct: 40 KMQELVRRGNSQYPGAKFIIRDNGDRIDLRFNPKSSDLHLQCGYKVERHVHDGDLVVFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAE+ENIHV
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHV 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 160 TPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 196
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGDLV+FNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 84 KVERHVHDGDLVVFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ENIHVTPRQIITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIENIHVTPRQIITPQANKPVMGIVQDTLCAVRKMTKRDVFLE 195
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAK+I+RDNG+RIDLRF+PK SDLHLQCGYKVERH+ DGDLV+FNRQ
Sbjct: 41 MQELVRRGNSQYPGAKFIIRDNGDRIDLRFNPKSSDLHLQCGYKVERHVHDGDLVVFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNL 125
>gi|31127003|gb|AAF26621.2|AF138971_1 RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 624
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 154/159 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LV+RGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI DGDLVIFNR
Sbjct: 40 KMQDLVKRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+EN+HV
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHV 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
TPR I+TPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K E
Sbjct: 160 TPRMIVTPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEE 198
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 84 KVERHIIDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+EN+HVTPR I+TPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIENMHVTPRMIVTPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV+RGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERHI DGDLVIFNRQ
Sbjct: 41 MQDLVKRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNLSV 127
>gi|31127030|gb|AAF26646.2|AF138996_1 RNA polymerase II largest subunit [Nebalia hessleri]
Length = 624
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 142/156 (91%), Positives = 151/156 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGNSQYPGAKYIVRDNG RIDLR+HPKPSDLHLQCGYKVERHI DGDLVIFNR
Sbjct: 40 KMMELVKRGNSQYPGAKYIVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+EN+HV
Sbjct: 100 QPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHV 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
TPR IITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 160 TPRMIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/112 (91%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 84 KVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+EN+HVTPR IITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIENMHVTPRMIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGNSQYPGAKYIVRDNG RIDLR+HPKPSDLHLQCGYKVERHI DGDLVIFNRQ
Sbjct: 41 MMELVKRGNSQYPGAKYIVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVKVLPWSTFRMNLSV 127
>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
Length = 751
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 150/157 (95%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGY+VERH+RDGD+VIFNR
Sbjct: 52 KMQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNR 111
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH +RV PWSTFRMNLS T+PYNADFDGDEMNLHVPQSMETRAE+E + +
Sbjct: 112 QPTLHKMSMMGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAI 171
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 172 VPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDK 208
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 106/112 (94%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD+VIFNRQPTLHKMSMMGH +RV PWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 96 RVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLH 155
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 156 VPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLD 207
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/87 (88%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGY+VERH+RDGD+VIFNRQ
Sbjct: 53 MQELVRRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNRQ 112
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH +RV PWSTFRMNL +
Sbjct: 113 PTLHKMSMMGHHIRVFPWSTFRMNLSV 139
>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bothropolys multidentatus]
Length = 624
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNR
Sbjct: 40 KMQELVRRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH +RVLPWSTFRMNLS T+PYNADFDGDEMNLHVPQSMETRAE+E + +
Sbjct: 100 QPTLHKMSMMGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAI 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 160 VPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 196
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 107/112 (95%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD+VIFNRQPTLHKMSMMGH +RVLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 84 KVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNRQ
Sbjct: 41 MQELVRRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH +RVLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHHIRVLPWSTFRMNLSV 127
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV+RGNSQYPGAKYI+R+NGERIDLR+HPK +DLHLQ GYKVERHIRDGDLVIFNR
Sbjct: 313 KLTELVQRGNSQYPGAKYIIRENGERIDLRYHPKTTDLHLQFGYKVERHIRDGDLVIFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVRVLPWSTFRMNLSCT+PYNADFDGDEMNLHV QS+ETRAE+ENIH+
Sbjct: 373 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTTPYNADFDGDEMNLHVAQSLETRAELENIHI 432
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ NRPVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 433 TPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLEK 469
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/115 (91%), Positives = 110/115 (95%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT+PYNADFDGDEM
Sbjct: 354 FGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTTPYNADFDGDEM 413
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
NLHV QS+ETRAE+ENIH+TPRQIITPQ NRPVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 414 NLHVAQSLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLE 468
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+RGNSQYPGAKYI+R+NGERIDLR+HPK +DLHLQ GYKVERHIRDGDLVIFNRQ
Sbjct: 314 LTELVQRGNSQYPGAKYIIRENGERIDLRYHPKTTDLHLQFGYKVERHIRDGDLVIFNRQ 373
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRVRVLPWSTFRMNL
Sbjct: 374 PTLHKMSMMGHRVRVLPWSTFRMNL 398
>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion magnum]
Length = 624
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 150/157 (95%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNR
Sbjct: 40 KMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH +RV PWSTFRMNLS T+PYNADFDGDEMNLHVPQSMETRAE+E + +
Sbjct: 100 QPTLHKMSMMGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAI 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVF++K
Sbjct: 160 VPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFIEK 196
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/112 (85%), Positives = 106/112 (94%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD+VIFNRQPTLHKMSMMGH +RV PWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 84 KVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVF++
Sbjct: 144 VPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFIE 195
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNRQ
Sbjct: 41 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH +RV PWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHHIRVFPWSTFRMNLSV 127
>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
Length = 734
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNR
Sbjct: 52 KMQELVQRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNR 111
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH +RVLPWSTFRMNLS T+PYNADFDGDEMNLHVPQSMETRAE+E + +
Sbjct: 112 QPTLHKMSMMGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAI 171
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 172 VPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEK 208
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 107/112 (95%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD+VIFNRQPTLHKMSMMGH +RVLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 96 KVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLH 155
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+E + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 156 VPQSMETRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLE 207
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/87 (88%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGN+QYPGAKYI+RDNGERIDLRFHPKPSDLHLQCGYKVERH+RDGD+VIFNRQ
Sbjct: 53 MQELVQRGNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQ 112
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH +RVLPWSTFRMNL +
Sbjct: 113 PTLHKMSMMGHHIRVLPWSTFRMNLSV 139
>gi|328709688|ref|XP_003244040.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 382
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 149/157 (94%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGNSQYPGAKYI+RDNGERIDLR+H KP DL+LQCGYKVERHI+DGDLV+FNR
Sbjct: 222 QMLELVRRGNSQYPGAKYIIRDNGERIDLRYHSKPLDLNLQCGYKVERHIKDGDLVVFNR 281
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADF G EMNLHVPQSMETRAEVENIH+
Sbjct: 282 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFSGGEMNLHVPQSMETRAEVENIHI 341
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T RQIITPQ NRPVMGIVQDTLTAV KMT+RDVF++K
Sbjct: 342 TSRQIITPQANRPVMGIVQDTLTAVTKMTRRDVFIEK 378
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/112 (90%), Positives = 107/112 (95%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGDLV+FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADF G EMNLH
Sbjct: 266 KVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFSGGEMNLH 325
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAEVENIH+T RQIITPQ NRPVMGIVQDTLTAV KMT+RDVF++
Sbjct: 326 VPQSMETRAEVENIHITSRQIITPQANRPVMGIVQDTLTAVTKMTRRDVFIE 377
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYI+RDNGERIDLR+H KP DL+LQCGYKVERHI+DGDLV+FNRQ
Sbjct: 223 MLELVRRGNSQYPGAKYIIRDNGERIDLRYHSKPLDLNLQCGYKVERHIKDGDLVVFNRQ 282
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRVRVLPWSTFRMNL
Sbjct: 283 PTLHKMSMMGHRVRVLPWSTFRMNL 307
>gi|31127032|gb|AAF26647.2|AF138997_1 RNA polymerase II largest subunit [Cypridopsis vidua]
Length = 624
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 137/153 (89%), Positives = 148/153 (96%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LV RGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHL+ GYKVERH+RDGDLVIFNRQPTL
Sbjct: 44 LVHRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLEVGYKVERHVRDGDLVIFNRQPTL 103
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMN+HVPQSMETRAE+EN+H+TPR
Sbjct: 104 HKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNMHVPQSMETRAEIENLHLTPRM 163
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ITPQ N+PVMGIVQDTL AVRKMTKRDVFL+K
Sbjct: 164 VITPQANKPVMGIVQDTLCAVRKMTKRDVFLEK 196
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 109/112 (97%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGDLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMN+H
Sbjct: 84 KVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNMH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+EN+H+TPR +ITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 144 VPQSMETRAEIENLHLTPRMVITPQANKPVMGIVQDTLCAVRKMTKRDVFLE 195
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/82 (92%), Positives = 80/82 (97%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV RGNSQYPGAKYI+RDNGERIDLRFHPKPSDLHL+ GYKVERH+RDGDLVIFNRQPTL
Sbjct: 44 LVHRGNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLEVGYKVERHVRDGDLVIFNRQPTL 103
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHRV+VLPWSTFRMNL
Sbjct: 104 HKMSMMGHRVKVLPWSTFRMNL 125
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 134/162 (82%), Positives = 154/162 (95%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F M+ +M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGY+VERH+R+GD+
Sbjct: 397 FNMD-KMHELVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYRVERHVRNGDI 455
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
++FNRQPTLHKMSMMGHR++VLPWSTFRMNLS T+PYNADFDGDEMNLHVPQS+ETRAEV
Sbjct: 456 IVFNRQPTLHKMSMMGHRIKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEV 515
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
E + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+K
Sbjct: 516 EQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEK 557
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 108/112 (96%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+R+GD+++FNRQPTLHKMSMMGHR++VLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 445 RVERHVRNGDIIVFNRQPTLHKMSMMGHRIKVLPWSTFRMNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAEVE + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+
Sbjct: 505 VPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLE 556
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGY+VERH+R+GD+++FNRQ
Sbjct: 402 MHELVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYRVERHVRNGDIIVFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHR++VLPWSTFRMNL +
Sbjct: 462 PTLHKMSMMGHRIKVLPWSTFRMNLSV 488
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
Length = 887
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 133/157 (84%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERH+++GD+VIFNR
Sbjct: 40 KMHELVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYKVERHVKNGDVVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH++RVLPWSTFR+NLS T+PYNADFDGDEMNLHVPQS+ETRAEV+ + +
Sbjct: 100 QPTLHKMSMMGHKIRVLPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEVQELAL 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 160 VPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEK 196
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/112 (83%), Positives = 108/112 (96%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++GD+VIFNRQPTLHKMSMMGH++RVLPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 84 KVERHVKNGDVVIFNRQPTLHKMSMMGHKIRVLPWSTFRLNLSVTTPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAEV+ + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 144 VPQSLETRAEVQELALVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLE 195
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/87 (85%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGYKVERH+++GD+VIFNRQ
Sbjct: 41 MHELVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYKVERHVKNGDVVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH++RVLPWSTFR+NL +
Sbjct: 101 PTLHKMSMMGHKIRVLPWSTFRLNLSV 127
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 151/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M +LVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGY+VERH+RDGD+++FNR
Sbjct: 398 KMHDLVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNR 457
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH+++VLPWSTFRMNLS T+PYNADFDGDEMNLHVPQS+ETRAEVE + +
Sbjct: 458 QPTLHKMSMMGHKIKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAM 517
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+K
Sbjct: 518 VPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEK 554
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 108/112 (96%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD+++FNRQPTLHKMSMMGH+++VLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 442 RVERHVRDGDIIVFNRQPTLHKMSMMGHKIKVLPWSTFRMNLSVTTPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAEVE + + PRQIITPQ+N+PVMGIVQDTLTAVRKMTKRD+FL+
Sbjct: 502 VPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLE 553
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 84/87 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVRRGN+QYPGAKYI+RDNGERIDLRFHPK SDLHLQCGY+VERH+RDGD+++FNRQ
Sbjct: 399 MHDLVRRGNNQYPGAKYIIRDNGERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNRQ 458
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH+++VLPWSTFRMNL +
Sbjct: 459 PTLHKMSMMGHKIKVLPWSTFRMNLSV 485
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 148/156 (94%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELV RGN+QYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+++GD+++FNRQ
Sbjct: 395 MQELVSRGNNQYPGAKYIVRDNGERIDLRFHPKASDLHLQCGYKVERHVQNGDIIVFNRQ 454
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGH++RVLPWSTFRMNLS T+PYNADFDGDEMN+HVPQS+ETRAE+E + +
Sbjct: 455 PTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMV 514
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+K
Sbjct: 515 PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEK 550
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 107/112 (95%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++GD+++FNRQPTLHKMSMMGH++RVLPWSTFRMNLS T+PYNADFDGDEMN+H
Sbjct: 438 KVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAE+E + + PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+
Sbjct: 498 VPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLE 549
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RGN+QYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+++GD+++FNRQ
Sbjct: 395 MQELVSRGNNQYPGAKYIVRDNGERIDLRFHPKASDLHLQCGYKVERHVQNGDIIVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH++RVLPWSTFRMNL +
Sbjct: 455 PTLHKMSMMGHKIRVLPWSTFRMNLSV 481
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 149/157 (94%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELV RGN+QYPGAKYIVR+NGERIDLRFHPK SDLHLQCGY+VERH+++GD+++FNR
Sbjct: 395 RMQELVSRGNNQYPGAKYIVRENGERIDLRFHPKASDLHLQCGYRVERHVQNGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH++RVLPWSTFRMNLS T+PYNADFDGDEMN+HVPQS+ETRAE+E + +
Sbjct: 455 QPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+K
Sbjct: 515 VPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEK 551
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 107/112 (95%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+++GD+++FNRQPTLHKMSMMGH++RVLPWSTFRMNLS T+PYNADFDGDEMN+H
Sbjct: 439 RVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMNLSVTTPYNADFDGDEMNMH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAE+E + + PRQIITPQ N+PVMGIVQDTLTAVRKMTKRDV+L+
Sbjct: 499 VPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLE 550
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RGN+QYPGAKYIVR+NGERIDLRFHPK SDLHLQCGY+VERH+++GD+++FNRQ
Sbjct: 396 MQELVSRGNNQYPGAKYIVRENGERIDLRFHPKASDLHLQCGYRVERHVQNGDIIVFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGH++RVLPWSTFRMNL +
Sbjct: 456 PTLHKMSMMGHKIRVLPWSTFRMNLSV 482
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/159 (83%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 399 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 459 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD+ E
Sbjct: 519 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLDRGE 557
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 443 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD
Sbjct: 503 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLD 554
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 402 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 461
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 462 LHKMSMMGHRVRILPWSTFRLNLSV 486
>gi|31127042|gb|AAF26663.2|AF139013_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
Length = 624
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/157 (84%), Positives = 147/157 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV RGNSQYPGAKYI+RDNGER+DLRFHPKPSD+HLQ GY+VERH+RDGD+VIFNR
Sbjct: 40 KMHELVHRGNSQYPGAKYIIRDNGERVDLRFHPKPSDVHLQYGYRVERHVRDGDVVIFNR 99
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVRVLPWSTFRMNLS T+PYNADFDGDEMNLHVPQS+ETRAE+E + +
Sbjct: 100 QPTLHKMSMMGHRVRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEKLAM 159
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR IITPQ N+PVMGIVQDTL AVRKMTKRDVFL++
Sbjct: 160 VPRNIITPQANKPVMGIVQDTLMAVRKMTKRDVFLER 196
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD+VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 84 RVERHVRDGDVVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSVTTPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAE+E + + PR IITPQ N+PVMGIVQDTL AVRKMTKRDVFL+
Sbjct: 144 VPQSLETRAEIEKLAMVPRNIITPQANKPVMGIVQDTLMAVRKMTKRDVFLE 195
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/87 (87%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RGNSQYPGAKYI+RDNGER+DLRFHPKPSD+HLQ GY+VERH+RDGD+VIFNRQ
Sbjct: 41 MHELVHRGNSQYPGAKYIIRDNGERVDLRFHPKPSDVHLQYGYRVERHVRDGDVVIFNRQ 100
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRVRVLPWSTFRMNL +
Sbjct: 101 PTLHKMSMMGHRVRVLPWSTFRMNLSV 127
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 368 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 427
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 428 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 487
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 488 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 526
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 412 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 471
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 472 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 523
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 371 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 430
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 431 LHKMSMMGHRVRILPWSTFRLNLSV 455
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 368 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 427
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 428 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 487
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 488 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 526
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 412 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 471
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 472 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 523
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 371 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 430
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 431 LHKMSMMGHRVRILPWSTFRLNLSV 455
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 368 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 427
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 428 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 487
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 488 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 526
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 412 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 471
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 472 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 523
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 371 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 430
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 431 LHKMSMMGHRVRILPWSTFRLNLSV 455
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 400 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 460 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 520 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 558
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 444 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 504 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 555
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 403 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 462
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 463 LHKMSMMGHRVRILPWSTFRLNLSV 487
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 377 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 436
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 437 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 496
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 497 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 535
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 421 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 480
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 481 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 532
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 380 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 439
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 440 LHKMSMMGHRVRILPWSTFRLNLSV 464
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 399 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 459 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 519 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 557
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 443 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 503 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 554
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 402 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 461
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 462 LHKMSMMGHRVRILPWSTFRLNLSV 486
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 399 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 459 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 519 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 557
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 443 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 503 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 554
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 402 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPT 461
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 462 LHKMSMMGHRVRILPWSTFRLNLSV 486
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 129/159 (81%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNR
Sbjct: 398 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNR 457
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 458 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 517
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 518 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 556
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 442 KVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 502 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 553
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNRQPT
Sbjct: 401 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPT 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 461 LHKMSMMGHRVRILPWSTFRLNLSV 485
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 129/159 (81%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNR
Sbjct: 398 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNR 457
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 458 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 517
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 518 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 556
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 442 KVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 502 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 553
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNRQPT
Sbjct: 401 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPT 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 461 LHKMSMMGHRVRILPWSTFRLNLSV 485
>gi|45501363|gb|AAH67295.1| POLR2A protein [Homo sapiens]
Length = 566
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 131/158 (82%), Positives = 149/158 (94%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++V
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERV 558
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>gi|149053074|gb|EDM04891.1| rCG34901 [Rattus norvegicus]
Length = 244
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 131/158 (82%), Positives = 149/158 (94%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 73 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 132
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 133 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 192
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++V
Sbjct: 193 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERV 230
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 117 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 176
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 177 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 228
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 76 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 135
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 136 LHKMSMMGHRVRILPWSTFRLNL 158
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/157 (81%), Positives = 146/157 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELV+RGN+QYPGAKYI+RDNG+RIDLRFHPK SDLHLQCGY+VERHIRD D VIFNR
Sbjct: 402 RMHELVKRGNNQYPGAKYIIRDNGDRIDLRFHPKASDLHLQCGYRVERHIRDNDYVIFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHR+++LPWSTFR+NLS T+PYNADFDGDEMNLHVPQS+ET+AE+ I +
Sbjct: 462 QPTLHKMSMMGHRIKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETKAEISEIIL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ+N+PVMGIVQD+L AVRK TKRDVFL+K
Sbjct: 522 VPRQIITPQSNKPVMGIVQDSLAAVRKFTKRDVFLEK 558
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 103/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRD D VIFNRQPTLHKMSMMGHR+++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 446 RVERHIRDNDYVIFNRQPTLHKMSMMGHRIKILPWSTFRLNLSVTTPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ET+AE+ I + PRQIITPQ+N+PVMGIVQD+L AVRK TKRDVFL+
Sbjct: 506 VPQSLETKAEISEIILVPRQIITPQSNKPVMGIVQDSLAAVRKFTKRDVFLE 557
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 82/87 (94%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RGN+QYPGAKYI+RDNG+RIDLRFHPK SDLHLQCGY+VERHIRD D VIFNRQ
Sbjct: 403 MHELVKRGNNQYPGAKYIIRDNGDRIDLRFHPKASDLHLQCGYRVERHIRDNDYVIFNRQ 462
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHR+++LPWSTFR+NL +
Sbjct: 463 PTLHKMSMMGHRIKILPWSTFRLNLSV 489
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/159 (81%), Positives = 148/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 366 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 425
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTL KMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 426 QPTLRKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 485
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 486 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 524
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 104/112 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTL KMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 410 KVERHMCDGDIVIFNRQPTLRKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 469
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 470 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 521
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/85 (87%), Positives = 81/85 (95%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 369 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 428
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
L KMSMMGHRVR+LPWSTFR+NL +
Sbjct: 429 LRKMSMMGHRVRILPWSTFRLNLSV 453
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 145/157 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRG +QYPGAKYI+RD G RIDLR+HPKPSDLHLQCGYKVERHIRD D+VIFNR
Sbjct: 397 RMQELVRRGANQYPGAKYIIRDTGHRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFNR 456
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEMN+HVPQS+ETRAE+ + +
Sbjct: 457 QPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETRAEIMELAM 516
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR IITPQ+NRPVMGIVQDTLTAVRK TKRDVF+D+
Sbjct: 517 VPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDR 553
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 104/112 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHIRD D+VIFNRQPTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEMN+H
Sbjct: 441 KVERHIRDDDIVIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNMH 500
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAE+ + + PR IITPQ+NRPVMGIVQDTLTAVRK TKRDVF+D
Sbjct: 501 VPQSVETRAEIMELAMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFID 552
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 81/87 (93%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRG +QYPGAKYI+RD G RIDLR+HPKPSDLHLQCGYKVERHIRD D+VIFNRQ
Sbjct: 398 MQELVRRGANQYPGAKYIIRDTGHRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFNRQ 457
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV++LPWSTFR+NL +
Sbjct: 458 PTLHKMSMMGHRVKILPWSTFRLNLSV 484
>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Scutigerella sp. Scu3]
Length = 624
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 132/153 (86%), Positives = 141/153 (92%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LV RGNSQYPGAKYI+R NGER DLRFHPK SDLHLQ GYKVERH+RDGD+++FNRQPTL
Sbjct: 44 LVXRGNSQYPGAKYIIRXNGERXDLRFHPKXSDLHLQIGYKVERHVRDGDVIVFNRQPTL 103
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMMGH RVLPWSTFRMNLS T+PYNADFDGDEMNLHVPQS ETRAEVE + + PRQ
Sbjct: 104 HKMSMMGHHXRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSNETRAEVEELAIVPRQ 163
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
IITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLDK
Sbjct: 164 IITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDK 196
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD+++FNRQPTLHKMSMMGH RVLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 84 KVERHVRDGDVIVFNRQPTLHKMSMMGHHXRVLPWSTFRMNLSVTTPYNADFDGDEMNLH 143
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEVE + + PRQIITPQ+NRPVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 144 VPQSNETRAEVEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLD 195
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/84 (83%), Positives = 76/84 (90%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV RGNSQYPGAKYI+R NGER DLRFHPK SDLHLQ GYKVERH+RDGD+++FNRQPTL
Sbjct: 44 LVXRGNSQYPGAKYIIRXNGERXDLRFHPKXSDLHLQIGYKVERHVRDGDVIVFNRQPTL 103
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH RVLPWSTFRMNL +
Sbjct: 104 HKMSMMGHHXRVLPWSTFRMNLSV 127
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/164 (79%), Positives = 149/164 (90%), Gaps = 5/164 (3%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK-----VERHIRDGDL 140
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+ DGD+
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKACNKLVERHMCDGDI 460
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE+
Sbjct: 461 VIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 520
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 564
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 104/111 (93%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 451 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 510
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 511 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 561
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 82/90 (91%), Gaps = 5/90 (5%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK-----VERHIRDGDLVIF 57
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+ DGD+VIF
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKACNKLVERHMCDGDIVIF 463
Query: 58 NRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
NRQPTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 NRQPTLHKMSMMGHRVRILPWSTFRLNLSV 493
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/164 (79%), Positives = 149/164 (90%), Gaps = 5/164 (3%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK-----VERHIRDGDL 140
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+ DGD+
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKAFPPQVERHMCDGDI 460
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE+
Sbjct: 461 VIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 520
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 564
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 234 TKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADF 293
T F +VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADF
Sbjct: 442 TGYKAFPPQVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADF 501
Query: 294 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
DGDEMNLH+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 502 DGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 561
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 82/90 (91%), Gaps = 5/90 (5%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK-----VERHIRDGDLVIF 57
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+ DGD+VIF
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKAFPPQVERHMCDGDIVIF 463
Query: 58 NRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
NRQPTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 NRQPTLHKMSMMGHRVRILPWSTFRLNLSV 493
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 146/156 (93%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELVRRGN+QYPGAKYI+RDNGER+DLRFHPKPSDLHLQ GYKVERHIRD D++IFNRQ
Sbjct: 407 MQELVRRGNNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQ 466
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEMNLHVPQS+E++AE+ I +
Sbjct: 467 PTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMV 526
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I+TPQ+N+PVMGIVQD+LTAVRK TKRDVF++K
Sbjct: 527 PRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEK 562
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/115 (76%), Positives = 105/115 (91%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F KVERHIRD D++IFNRQPTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEM
Sbjct: 447 FGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEM 506
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
NLHVPQS+E++AE+ I + PR I+TPQ+N+PVMGIVQD+LTAVRK TKRDVF++
Sbjct: 507 NLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIE 561
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/87 (85%), Positives = 83/87 (95%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGN+QYPGAKYI+RDNGER+DLRFHPKPSDLHLQ GYKVERHIRD D++IFNRQ
Sbjct: 407 MQELVRRGNNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQ 466
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV++LPWSTFR+NL +
Sbjct: 467 PTLHKMSMMGHRVKILPWSTFRLNLSV 493
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 144/157 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRG +QYPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D ++FNR
Sbjct: 394 RMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMM H+V+VLPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AE+ N+ +
Sbjct: 454 QPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLAL 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 514 VPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDR 550
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 103/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++D D ++FNRQPTLHKMSMM H+V+VLPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 438 KVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AE+ N+ + PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 498 LPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLD 549
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 79/87 (90%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRG +QYPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D ++FNRQ
Sbjct: 395 MQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMM H+V+VLPWSTFR+NL +
Sbjct: 455 PTLHKMSMMCHKVKVLPWSTFRLNLSV 481
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 131/169 (77%), Positives = 149/169 (88%), Gaps = 10/169 (5%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK----------VERHI 135
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKAPSQSAWIIGVERHM 460
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+E
Sbjct: 461 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 520
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
TRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 569
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 108/122 (88%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K + ++ VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNA
Sbjct: 445 KAPSQSAWIIGVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNA 504
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVF
Sbjct: 505 DFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVF 564
Query: 352 LD 353
L+
Sbjct: 565 LE 566
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 82/95 (86%), Gaps = 10/95 (10%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK----------VERHIRDG 52
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK VERH+ DG
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKAPSQSAWIIGVERHMCDG 463
Query: 53 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
D+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 DIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 498
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 127/157 (80%), Positives = 144/157 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRG +QYPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D ++FNR
Sbjct: 312 RMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMM H+V+VLPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AE+ N+ +
Sbjct: 372 QPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLAL 431
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD+
Sbjct: 432 VPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLDR 468
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 103/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++D D ++FNRQPTLHKMSMM H+V+VLPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 356 KVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNADFDGDEMNLH 415
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AE+ N+ + PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFLD
Sbjct: 416 LPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLD 467
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 79/87 (90%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRG +QYPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D ++FNRQ
Sbjct: 313 MQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQ 372
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMM H+V+VLPWSTFR+NL +
Sbjct: 373 PTLHKMSMMCHKVKVLPWSTFRLNLSV 399
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 124/157 (78%), Positives = 143/157 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+RDNGER+DLRFHPKPSDLHLQCGYKVERH+RD D+VIFNR
Sbjct: 401 KLQELVSRGHNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++L WSTFR+NLS T+PYNADFDGDEMNLHVPQSMETRAEV + +
Sbjct: 461 QPTLHKMSMMGHRVKILTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+ K
Sbjct: 521 VSRNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTK 557
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD D+VIFNRQPTLHKMSMMGHRV++L WSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHLRDDDVVIFNRQPTLHKMSMMGHRVKILTWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEV + + R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+
Sbjct: 505 VPQSMETRAEVSEMIMVSRNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFV 555
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+RDNGER+DLRFHPKPSDLHLQCGYKVERH+RD D+VIFNRQPT
Sbjct: 404 ELVSRGHNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++L WSTFR+NL +
Sbjct: 464 LHKMSMMGHRVKILTWSTFRLNLSV 488
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 124/157 (78%), Positives = 143/157 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+RDNGER+DLRFHPKPSDLHLQCGYKVERH+RD D+VIFNR
Sbjct: 401 KLQELVSRGHNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++L WSTFR+NLS T+PYNADFDGDEMNLHVPQSMETRAEV + +
Sbjct: 461 QPTLHKMSMMGHRVKILTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+ K
Sbjct: 521 VSRNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTK 557
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD D+VIFNRQPTLHKMSMMGHRV++L WSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHLRDDDVVIFNRQPTLHKMSMMGHRVKILTWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEV + + R +ITPQ+NRPVMGIVQD+L A+RK TKRDVF+
Sbjct: 505 VPQSMETRAEVSEMIMVSRNMITPQSNRPVMGIVQDSLCAIRKFTKRDVFV 555
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+RDNGER+DLRFHPKPSDLHLQCGYKVERH+RD D+VIFNRQPT
Sbjct: 404 ELVSRGHNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++L WSTFR+NL +
Sbjct: 464 LHKMSMMGHRVKILTWSTFRLNLSV 488
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 128/158 (81%), Positives = 141/158 (89%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M E VRRG + YPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D+VIFNRQ
Sbjct: 316 MQERVRRGANVYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDVVIFNRQ 375
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMM HRV+VLPWSTFRMNLS T+PYNADFDGDEMNLH+PQS+ETRAE+ N+
Sbjct: 376 PTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIMNLCAV 435
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL + +
Sbjct: 436 PRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQ 473
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/111 (83%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++D D+VIFNRQPTLHKMSMM HRV+VLPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 359 KVERHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS+ETRAE+ N+ PR IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL
Sbjct: 419 LPQSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFL 469
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 78/87 (89%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M E VRRG + YPGAKYI+RDNGERIDLRFHPK SDLHLQ GYKVERH++D D+VIFNRQ
Sbjct: 316 MQERVRRGANVYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVERHMQDNDVVIFNRQ 375
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMM HRV+VLPWSTFRMNL +
Sbjct: 376 PTLHKMSMMCHRVKVLPWSTFRMNLSV 402
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEICM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 499 LPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 143/157 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELV RG++QYPGAKYI+R+NGERIDLR+HPKPSDLHLQ GYK+ERHI D DL++FNR
Sbjct: 394 RMQELVARGHNQYPGAKYIIRENGERIDLRYHPKPSDLHLQYGYKIERHIVDDDLIVFNR 453
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEMNLHVPQS+ET+AE++ + +
Sbjct: 454 QPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETKAEIQELMM 513
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
R I+TPQ+NRPVMGIVQD+LTA K TKRDVFL+K
Sbjct: 514 VHRNILTPQSNRPVMGIVQDSLTAATKFTKRDVFLEK 550
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 101/112 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
K+ERHI D DL++FNRQPTLHKMSMMGHRV++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 438 KIERHIVDDDLIVFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ET+AE++ + + R I+TPQ+NRPVMGIVQD+LTA K TKRDVFL+
Sbjct: 498 VPQSLETKAEIQELMMVHRNILTPQSNRPVMGIVQDSLTAATKFTKRDVFLE 549
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 81/87 (93%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RG++QYPGAKYI+R+NGERIDLR+HPKPSDLHLQ GYK+ERHI D DL++FNRQ
Sbjct: 395 MQELVARGHNQYPGAKYIIRENGERIDLRYHPKPSDLHLQYGYKIERHIVDDDLIVFNRQ 454
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV++LPWSTFR+NL +
Sbjct: 455 PTLHKMSMMGHRVKILPWSTFRLNLSV 481
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 393 KLQELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AEV I +
Sbjct: 453 QPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 513 VPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 437 RVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AEV I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 497 LPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 396 ELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V++LPWSTFR+NL +
Sbjct: 456 LHKMSMMGHKVKILPWSTFRLNLSV 480
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 393 KLQELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AEV I +
Sbjct: 453 QPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 513 VPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 437 RVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AEV I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 497 LPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 396 ELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V++LPWSTFR+NL +
Sbjct: 456 LHKMSMMGHKVKILPWSTFRLNLSV 480
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 466 KLQELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 525
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AEV I +
Sbjct: 526 QPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAM 585
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 586 VPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 621
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 510 RVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 569
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AEV I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 570 LPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 621
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG+SQYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 469 ELVNRGDSQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 528
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V++LPWSTFR+NL +
Sbjct: 529 LHKMSMMGHKVKILPWSTFRLNLSV 553
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 149/200 (74%), Gaps = 41/200 (20%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK--------------- 130
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKARNRPGSQLREQEAG 460
Query: 131 --------------------------VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 164
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPW
Sbjct: 461 KRVGTLSRPVHKDPDLLAVLKTAALWVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW 520
Query: 165 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 224
STFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQ
Sbjct: 521 STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQ 580
Query: 225 DTLTAVRKMTKRDVFLDKVE 244
DTLTAVRK TKRDVFL++ E
Sbjct: 581 DTLTAVRKFTKRDVFLERGE 600
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 104/111 (93%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 487 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 546
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 547 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 597
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 82/126 (65%), Gaps = 41/126 (32%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK------------------ 44
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKARNRPGSQLREQEAGKRV 463
Query: 45 -----------------------VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF 81
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTF
Sbjct: 464 GTLSRPVHKDPDLLAVLKTAALWVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF 523
Query: 82 RMNLRM 87
R+NL +
Sbjct: 524 RLNLSV 529
>gi|313247739|emb|CBY15868.1| unnamed protein product [Oikopleura dioica]
Length = 523
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 121/153 (79%), Positives = 139/153 (90%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV RG +QYPGAKY++RD GERIDLR+HPKPSDL LQ GY+VERH+RD D+V+FNRQPT
Sbjct: 371 ELVNRGANQYPGAKYVIRDTGERIDLRYHPKPSDLQLQIGYQVERHLRDNDVVVFNRQPT 430
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH V+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+ + + PR
Sbjct: 431 LHKMSMMGHLVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEILQLALVPR 490
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
++TPQ+NRPVMGIVQDTLTAVRK+TKRD F++
Sbjct: 491 MVVTPQSNRPVMGIVQDTLTAVRKLTKRDTFIE 523
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 103/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RD D+V+FNRQPTLHKMSMMGH V+VLPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 412 QVERHLRDNDVVVFNRQPTLHKMSMMGHLVKVLPWSTFRMNLSVTSPYNADFDGDEMNLH 471
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSMETRAE+ + + PR ++TPQ+NRPVMGIVQDTLTAVRK+TKRD F++
Sbjct: 472 VPQSMETRAEILQLALVPRMVVTPQSNRPVMGIVQDTLTAVRKLTKRDTFIE 523
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG +QYPGAKY++RD GERIDLR+HPKPSDL LQ GY+VERH+RD D+V+FNRQPT
Sbjct: 371 ELVNRGANQYPGAKYVIRDTGERIDLRYHPKPSDLQLQIGYQVERHLRDNDVVVFNRQPT 430
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGH V+VLPWSTFRMNL
Sbjct: 431 LHKMSMMGHLVKVLPWSTFRMNL 453
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 117/156 (75%), Positives = 143/156 (91%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG+SQYPGAKYI+RDNG R+DLR+HP+ +DL LQ GY+VERH++DGD+++FNR
Sbjct: 393 KLQELVNRGDSQYPGAKYIIRDNGARVDLRYHPRAADLLLQPGYRVERHMKDGDIIVFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS T+PYNADFDGDEMNLH+PQS+ET+AE+ I +
Sbjct: 453 QPTLHKMSMMGHRVKILPWSTFRMNLSVTTPYNADFDGDEMNLHLPQSLETKAEISEIAM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 513 VPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS T+PYNADFDGDEMNLH
Sbjct: 437 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTTPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AE+ I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 497 LPQSLETKAEISEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 548
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 79/85 (92%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG+SQYPGAKYI+RDNG R+DLR+HP+ +DL LQ GY+VERH++DGD+++FNRQPT
Sbjct: 396 ELVNRGDSQYPGAKYIIRDNGARVDLRYHPRAADLLLQPGYRVERHMKDGDIIVFNRQPT 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 456 LHKMSMMGHRVKILPWSTFRMNLSV 480
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 120/156 (76%), Positives = 140/156 (89%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ ELVRRG +QYPGAKYI+RDNG+R+DLR+HPK SDLHLQCGYKVERH+++ D ++FNRQ
Sbjct: 400 LSELVRRGANQYPGAKYIIRDNGDRVDLRYHPKDSDLHLQCGYKVERHMQNNDYIVFNRQ 459
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
PTLHKMSMM HRV++LPWSTFR+NLS T+PYNADFDGDEMNLH+ QS+ETRAE+ +
Sbjct: 460 PTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLAQSLETRAEINQLAAV 519
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
R IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+K
Sbjct: 520 NRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLEK 555
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++ D ++FNRQPTLHKMSMM HRV++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 443 KVERHMQNNDYIVFNRQPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+ QS+ETRAE+ + R IITPQ NRPVMGIVQDTLTAVRKMTKRDVFL+
Sbjct: 503 LAQSLETRAEINQLAAVNRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLE 554
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 80/87 (91%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVRRG +QYPGAKYI+RDNG+R+DLR+HPK SDLHLQCGYKVERH+++ D ++FNRQ
Sbjct: 400 LSELVRRGANQYPGAKYIIRDNGDRVDLRYHPKDSDLHLQCGYKVERHMQNNDYIVFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMM HRV++LPWSTFR+NL +
Sbjct: 460 PTLHKMSMMCHRVKILPWSTFRLNLSV 486
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/155 (76%), Positives = 137/155 (88%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG+S YPGAKYI+RDNG R+DLR+HP+ SDLHLQ GY VERH+RD D+VIFNRQPT
Sbjct: 386 DLVNRGDSHYPGAKYIIRDNGARVDLRYHPRLSDLHLQIGYTVERHMRDNDIVIFNRQPT 445
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRVRVLPWSTFR+NLS T+PYNADFDGDEMNLH+PQS E +AE+ + + PR
Sbjct: 446 LHKMSMMGHRVRVLPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSQEAKAEILELCMIPR 505
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
I+TPQ NRPVMGIVQDTLTA RK+TKRDVF+D+
Sbjct: 506 MILTPQANRPVMGIVQDTLTACRKLTKRDVFIDRA 540
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 100/111 (90%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQPTLHKMSMMGHRVRVLPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 428 VERHMRDNDIVIFNRQPTLHKMSMMGHRVRVLPWSTFRLNLSVTTPYNADFDGDEMNLHL 487
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E +AE+ + + PR I+TPQ NRPVMGIVQDTLTA RK+TKRDVF+D
Sbjct: 488 PQSQEAKAEILELCMIPRMILTPQANRPVMGIVQDTLTACRKLTKRDVFID 538
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 77/85 (90%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG+S YPGAKYI+RDNG R+DLR+HP+ SDLHLQ GY VERH+RD D+VIFNRQPT
Sbjct: 386 DLVNRGDSHYPGAKYIIRDNGARVDLRYHPRLSDLHLQIGYTVERHMRDNDIVIFNRQPT 445
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRVLPWSTFR+NL +
Sbjct: 446 LHKMSMMGHRVRVLPWSTFRLNLSV 470
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 140/156 (89%), Gaps = 4/156 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAK +NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 451 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 511 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 546
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 435 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 495 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 546
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%), Gaps = 4/85 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAK +NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAK----ENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 453
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 454 LHKMSMMGHRVKILPWSTFRMNLSV 478
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 138/155 (89%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV RG++QYPGAKY++R NGER+DLR+HP+ SDL +Q GYKVERH+RDGD+++FNRQPT
Sbjct: 417 ELVNRGDAQYPGAKYVIRSNGERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPT 476
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ET+AE+ I + PR
Sbjct: 477 LHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPR 536
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
Q+ITPQ N+PVMGIVQD LTAV +TKRD F++
Sbjct: 537 QLITPQANKPVMGIVQDALTAVYMLTKRDTFIEAA 571
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 102/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 458 KVERHMRDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLH 517
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ET+AE+ I + PRQ+ITPQ N+PVMGIVQD LTAV +TKRD F++
Sbjct: 518 LPQSLETKAEIAEIAMVPRQLITPQANKPVMGIVQDALTAVYMLTKRDTFIE 569
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 79/85 (92%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKY++R NGER+DLR+HP+ SDL +Q GYKVERH+RDGD+++FNRQPT
Sbjct: 417 ELVNRGDAQYPGAKYVIRSNGERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPT 476
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V++LPWSTFR+NL +
Sbjct: 477 LHKMSMMGHKVKILPWSTFRLNLSV 501
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/206 (62%), Positives = 146/206 (70%), Gaps = 47/206 (22%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER---HIRDGDLVI 142
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYK H+ DGD+VI
Sbjct: 222 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVI 281
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNL------------------------------- 171
FNRQPTLHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 282 FNRQPTLHKMSMMGHRVRILPWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQ 341
Query: 172 -------------SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRP 218
S T+PYNADFDGDEMNLH+PQS+ETRAE++ + + PR I+TPQ+NRP
Sbjct: 342 SSRYCMYFPDFCFSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRP 401
Query: 219 VMGIVQDTLTAVRKMTKRDVFLDKVE 244
VMGIVQDTLTAVRK TKRDVFLD+ E
Sbjct: 402 VMGIVQDTLTAVRKFTKRDVFLDRGE 427
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 101/152 (66%), Gaps = 44/152 (28%)
Query: 246 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL---------------------- 283
H+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 273 HMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLRYRLKQGRADAKAQGKPLIEFP 332
Query: 284 ----------------------SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 321
S T+PYNADFDGDEMNLH+PQS+ETRAE++ + + PR
Sbjct: 333 VCRINALAQSSRYCMYFPDFCFSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRM 392
Query: 322 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFLD
Sbjct: 393 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLD 424
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 137/159 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+RG +QYPGAK+I+R+ G+RIDLR+HPK +DLHLQ GY+VERH++D D VIFNR
Sbjct: 308 RLTELVKRGANQYPGAKFILRETGDRIDLRYHPKSTDLHLQFGYRVERHMQDNDYVIFNR 367
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMM HRV++LPWSTFR+NLS T+PYNADFDGDEMNLH+ QS+ETRAE+ +
Sbjct: 368 QPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLAQSLETRAEISQLAS 427
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
R IITPQ NRPVMGIVQD+LTAV KMT+RD F+ K E
Sbjct: 428 VKRMIITPQANRPVMGIVQDSLTAVNKMTRRDTFITKDE 466
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 97/114 (85%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F +VERH++D D VIFNRQPTLHKMSMM HRV++LPWSTFR+NLS T+PYNADFDGDEM
Sbjct: 349 FGYRVERHMQDNDYVIFNRQPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDGDEM 408
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
NLH+ QS+ETRAE+ + R IITPQ NRPVMGIVQD+LTAV KMT+RD F+
Sbjct: 409 NLHLAQSLETRAEISQLASVKRMIITPQANRPVMGIVQDSLTAVNKMTRRDTFI 462
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 78/87 (89%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+RG +QYPGAK+I+R+ G+RIDLR+HPK +DLHLQ GY+VERH++D D VIFNRQ
Sbjct: 309 LTELVKRGANQYPGAKFILRETGDRIDLRYHPKSTDLHLQFGYRVERHMQDNDYVIFNRQ 368
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMM HRV++LPWSTFR+NL +
Sbjct: 369 PTLHKMSMMCHRVKILPWSTFRLNLSV 395
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNR
Sbjct: 392 KMRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 452 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL R TKRD F++K
Sbjct: 512 VPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 100/112 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++
Sbjct: 496 VPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFME 547
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNRQ
Sbjct: 393 MRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 453 PSLHKMSMMGHRIKVMPYSTFRLNLSV 479
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 138/158 (87%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ GYKVERH+ +GD+VIFNR
Sbjct: 322 RMQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNNGDVVIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ET+AE++ I +
Sbjct: 382 QPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETKAEIKEICM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
P+QII+PQ+N+PVMGIVQDTL +RK TKRD F+DK
Sbjct: 442 VPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKA 479
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 102/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ +GD+VIFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET+AE++ I + P+QII+PQ+N+PVMGIVQDTL +RK TKRD F+D
Sbjct: 426 VPQSEETKAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVD 477
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ GYKVERH+ +GD+VIFNRQ
Sbjct: 323 MQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNNGDVVIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 383 PSLHKMSMMGHKVRVMPYSTFRLNLSV 409
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 137/158 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ GYKVERH+ DGD+VIFNR
Sbjct: 320 RMQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNDGDVVIFNR 379
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ET AE++ I +
Sbjct: 380 QPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETNAEIKEICM 439
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
P+QII+PQ+N+PVMGIVQDTL +RK TKRD F+DK
Sbjct: 440 VPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKA 477
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 101/112 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 364 KVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 423
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET AE++ I + P+QII+PQ+N+PVMGIVQDTL +RK TKRD F+D
Sbjct: 424 VPQSEETNAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVD 475
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ GYKVERH+ DGD+VIFNRQ
Sbjct: 321 MQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQ 380
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 381 PSLHKMSMMGHKVRVMPYSTFRLNLSV 407
>gi|343482716|gb|AEM45103.1| RNA polymerase II largest subunit [Archaeorhizomyces finlayi]
Length = 740
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 139/157 (88%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +Q+PGAKY++RD GERIDLR+H + D++LQ G++VERHI DGD++IFNR
Sbjct: 312 KLQELVRNGPNQHPGAKYVIRDTGERIDLRYHKRGGDINLQFGWRVERHIVDGDVIIFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+V+P+STFR+NLSCTSPYNADFDGDEMNLHVPQS ETRAEV I +
Sbjct: 372 QPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEMNLHVPQSEETRAEVTEICM 431
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL AVRK TKRD F+ +
Sbjct: 432 VPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFMSR 468
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 103/114 (90%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F +VERHI DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLSCTSPYNADFDGDEM
Sbjct: 353 FGWRVERHIVDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEM 412
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
NLHVPQS ETRAEV I + P+QI++PQ+N+PVMGIVQDTL AVRK TKRD F+
Sbjct: 413 NLHVPQSEETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFM 466
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 75/83 (90%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +Q+PGAKY++RD GERIDLR+H + D++LQ G++VERHI DGD++IFNRQP+
Sbjct: 315 ELVRNGPNQHPGAKYVIRDTGERIDLRYHKRGGDINLQFGWRVERHIVDGDVIIFNRQPS 374
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGH+V+V+P+STFR+NL
Sbjct: 375 LHKMSMMGHKVKVMPYSTFRLNL 397
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNR
Sbjct: 318 KMRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNR 377
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 378 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMM 437
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL R TKRD F++K
Sbjct: 438 VPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 474
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 100/112 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 362 KVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++
Sbjct: 422 VPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFME 473
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNRQ
Sbjct: 319 MRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQ 378
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 379 PSLHKMSMMGHRIKVMPYSTFRLNLSV 405
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 137/157 (87%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM EL+R G +++PGAKYI+R++G R DLRF K +D HL+CGYKVERHI+DGD+VIFNR
Sbjct: 393 RMRELIRNGPNEHPGAKYIIREDGTRFDLRFVKKITDTHLECGYKVERHIQDGDVVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 453 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEIIEIMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL K TKRD F+++
Sbjct: 513 VPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVER 549
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 101/112 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 437 KVERHIQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAE+ I + PRQI++PQ+NRPVMGIVQDTL K TKRD F++
Sbjct: 497 VPQSLETRAEIIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVE 548
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 77/87 (88%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G +++PGAKYI+R++G R DLRF K +D HL+CGYKVERHI+DGD+VIFNRQ
Sbjct: 394 MRELIRNGPNEHPGAKYIIREDGTRFDLRFVKKITDTHLECGYKVERHIQDGDVVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 454 PSLHKMSMMGHRIKVMPYSTFRLNLSV 480
>gi|367479041|gb|AEX16067.1| RPB1, partial [Umbelopsis ramanniana]
Length = 463
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LVR G +++PGAKYI+RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNR
Sbjct: 41 KLQTLVRNGPTEHPGAKYIIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNR 100
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 101 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICM 160
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 161 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFLSK 197
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 85 KVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 144
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 145 VPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFL 195
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 74/84 (88%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKYI+RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNRQP+L
Sbjct: 45 LVRNGPTEHPGAKYIIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSL 104
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH++RV+P+STFR+NL +
Sbjct: 105 HKMSMMGHKIRVMPYSTFRLNLSV 128
>gi|343482718|gb|AEM45104.1| RNA polymerase II largest subunit [Archaeorhizomyces sp. FG15P2b]
Length = 727
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 138/157 (87%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD GERIDLR+H + D++LQ G++VERH+ DGD VIFNR
Sbjct: 311 KLQELVRNGPNEHPGAKYVIRDTGERIDLRYHKRGGDINLQYGWRVERHVVDGDFVIFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+V+P+STFR+NLSCTSPYNADFDGDEMNLHVPQS ETRAE+ I +
Sbjct: 371 QPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEMNLHVPQSEETRAEISEICM 430
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL AVRK TKRD F+ +
Sbjct: 431 VPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFMSR 467
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGD VIFNRQP+LHKMSMMGH+V+V+P+STFR+NLSCTSPYNADFDGDEMNLH
Sbjct: 355 RVERHVVDGDFVIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDEMNLH 414
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL AVRK TKRD F+
Sbjct: 415 VPQSEETRAEISEICMVPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFM 465
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 74/83 (89%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD GERIDLR+H + D++LQ G++VERH+ DGD VIFNRQP+
Sbjct: 314 ELVRNGPNEHPGAKYVIRDTGERIDLRYHKRGGDINLQYGWRVERHVVDGDFVIFNRQPS 373
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGH+V+V+P+STFR+NL
Sbjct: 374 LHKMSMMGHKVKVMPYSTFRLNL 396
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M EL+R G +++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNR
Sbjct: 393 KMRELIRNGPNEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 453 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL R TKRD F+++
Sbjct: 513 VPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIER 549
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 100/112 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 437 KVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++
Sbjct: 497 VPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIE 548
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G +++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNRQ
Sbjct: 394 MRELIRNGPNEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 454 PSLHKMSMMGHRIKVMPYSTFRLNLSV 480
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 136/158 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +Q+PGAKYI+RD GERIDLR+H + D+ LQ GYKVERH+ +GD+VIFNR
Sbjct: 323 RLQELVRNGPNQHPGAKYIIRDTGERIDLRYHQRAGDIPLQYGYKVERHLDNGDVVIFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ET+ E++ I +
Sbjct: 383 QPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETKVEIQEICM 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
P+QII+PQ+N+PVMGIVQDTL VRK T RD F+DK
Sbjct: 443 VPKQIISPQSNKPVMGIVQDTLCGVRKFTNRDCFMDKA 480
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 100/112 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ +GD+VIFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 367 KVERHLDNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 426
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET+ E++ I + P+QII+PQ+N+PVMGIVQDTL VRK T RD F+D
Sbjct: 427 VPQSEETKVEIQEICMVPKQIISPQSNKPVMGIVQDTLCGVRKFTNRDCFMD 478
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +Q+PGAKYI+RD GERIDLR+H + D+ LQ GYKVERH+ +GD+VIFNRQP+
Sbjct: 326 ELVRNGPNQHPGAKYIIRDTGERIDLRYHQRAGDIPLQYGYKVERHLDNGDVVIFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 386 LHKMSMMGHKVRVMPYSTFRLNLSV 410
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/157 (71%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM+ LVRRG YPGAKY++R++GERI+L+F DL L G KVERHI++ D+++FNR
Sbjct: 389 RMYVLVRRGPDHYPGAKYVIRESGERINLKFRASRDDLTLHFGDKVERHIQNDDIIVFNR 448
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLHVPQS+E+RAE+ I +
Sbjct: 449 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESRAEITEICM 508
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI+TPQ+N+PVMGIVQD+LTAVRK T RDVFL+K
Sbjct: 509 VPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEK 545
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/115 (77%), Positives = 106/115 (92%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F DKVERHI++ D+++FNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEM
Sbjct: 430 FGDKVERHIQNDDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 489
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
NLHVPQS+E+RAE+ I + PRQI+TPQ+N+PVMGIVQD+LTAVRK T RDVFL+
Sbjct: 490 NLHVPQSLESRAEITEICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLE 544
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M+ LVRRG YPGAKY++R++GERI+L+F DL L G KVERHI++ D+++FNRQ
Sbjct: 390 MYVLVRRGPDHYPGAKYVIRESGERINLKFRASRDDLTLHFGDKVERHIQNDDIIVFNRQ 449
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 450 PTLHKMSMMGHRVRILPWSTFRLNLSV 476
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 135/155 (87%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKYI+RD GERIDLR+H + ++ LQ G++VERHI DGD++IFNR
Sbjct: 307 KLQELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGEIPLQYGWRVERHIVDGDVIIFNR 366
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I +
Sbjct: 367 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISEICM 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PRQI++PQ N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 427 VPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFL 461
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD++IFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 351 RVERHIVDGDVIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ I + PRQI++PQ N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 411 VPQSEETRAEISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFL 461
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKYI+RD GERIDLR+H + ++ LQ G++VERHI DGD++IFNRQP+
Sbjct: 310 ELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGEIPLQYGWRVERHIVDGDVIIFNRQPS 369
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 370 LHKMSMMGHRIRVMPYSTFRLNLSV 394
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 140/157 (89%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM+EL+R G +++PGA+YI+RD+G+R+DLR+ K SDLHL+ GY+VERHI+DGD V+FNR
Sbjct: 393 RMYELIRNGPNEHPGARYIIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+HV Q+ ETRAEV+ I +
Sbjct: 453 QPSLHKMSIMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTFETRAEVQEICL 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQII+PQ+NRPVMGIVQDTL A +KMT RD F++K
Sbjct: 513 VPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIEK 549
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 101/112 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD V+FNRQP+LHKMS+MGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 437 RVERHIQDGDYVLFNRQPSLHKMSIMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
V Q+ ETRAEV+ I + PRQII+PQ+NRPVMGIVQDTL A +KMT RD F++
Sbjct: 497 VAQTFETRAEVQEICLVPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIE 548
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 79/87 (90%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M+EL+R G +++PGA+YI+RD+G+R+DLR+ K SDLHL+ GY+VERHI+DGD V+FNRQ
Sbjct: 394 MYELIRNGPNEHPGARYIIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHRV+V+P+STFR+NL +
Sbjct: 454 PSLHKMSIMGHRVKVMPYSTFRLNLSV 480
>gi|83320452|gb|ABC02853.1| RNA polymerase II largest subunit, partial [Umbelopsis ramanniana]
Length = 571
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 135/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LVR G +++PGAKY++RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNR
Sbjct: 152 KLQTLVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNR 211
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 212 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICM 271
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL V K T+RD FL K
Sbjct: 272 VPKQIVSPQSNKPVMGIVQDTLAGVNKFTRRDSFLSK 308
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 196 KVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL V K T+RD FL
Sbjct: 256 VPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLAGVNKFTRRDSFL 306
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 74/84 (88%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNRQP+L
Sbjct: 156 LVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSL 215
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHR+RV+P+STFR+NL +
Sbjct: 216 HKMSMMGHRIRVMPYSTFRLNLSV 239
>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
Length = 845
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/168 (66%), Positives = 138/168 (82%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ ++ L +VR G +++PGAKY++RD GERIDLR+H + D+ L GYKVERH
Sbjct: 145 VTPYNIDKLQL----MVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGDIPLSYGYKVERH 200
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+
Sbjct: 201 INDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSV 260
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I P+QI++PQ+N PVMGIVQDTL +RK TKRD FL K
Sbjct: 261 ETRAEITEICRVPKQIVSPQSNXPVMGIVQDTLCGIRKFTKRDCFLTK 308
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 196 KVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I P+QI++PQ+N PVMGIVQDTL +RK TKRD FL
Sbjct: 256 VPQSVETRAEITEICRVPKQIVSPQSNXPVMGIVQDTLCGIRKFTKRDCFL 306
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 73/84 (86%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+VR G +++PGAKY++RD GERIDLR+H + D+ L GYKVERHI DGD+VIFNRQP+L
Sbjct: 156 MVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGDIPLSYGYKVERHINDGDVVIFNRQPSL 215
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHR+RV+P+STFR+NL +
Sbjct: 216 HKMSMMGHRIRVMPYSTFRLNLSV 239
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 141/168 (83%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ +++ ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERH
Sbjct: 386 VTPYNIYQLQ----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERH 441
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
IRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 442 IRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSE 501
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE++ I + PRQI++PQ+N+PVMGIVQDTL VRK + RD FL +
Sbjct: 502 ETRAEIQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLSR 549
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 437 RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ I + PRQI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 497 VPQSEETRAEIQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 547
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERHIRDGD+VIFNRQP+
Sbjct: 396 ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 456 LHKMSMMGHRIRVMPYSTFRLNLSV 480
>gi|367479039|gb|AEX16066.1| RPB1, partial [Umbelopsis isabellina]
Length = 460
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 135/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LVR G +++PGAKY++RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNR
Sbjct: 38 KLQTLVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNR 97
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 98 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICM 157
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL V K T+RD FL K
Sbjct: 158 VPKQIVSPQSNKPVMGIVQDTLAGVNKFTRRDSFLSK 194
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 82 KVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 141
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL V K T+RD FL
Sbjct: 142 VPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLAGVNKFTRRDSFL 192
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 74/84 (88%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RD GERIDLR+H + ++ LQ GYKVERHI DGD+VIFNRQP+L
Sbjct: 42 LVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSL 101
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHR+RV+P+STFR+NL +
Sbjct: 102 HKMSMMGHRIRVMPYSTFRLNLSV 125
>gi|359294815|gb|AEV21778.1| RPB1, partial [Mortierella longicollis]
Length = 464
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 135/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LVR G +++PGAKY++RD GERIDLR+H + ++ L GYKVERHI DGD+VIFNR
Sbjct: 39 KLQTLVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLHYGYKVERHINDGDVVIFNR 98
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 99 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICM 158
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 159 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFLSK 195
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 83 KVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 142
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 143 VPQSLETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFL 193
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 73/84 (86%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RD GERIDLR+H + ++ L GYKVERHI DGD+VIFNRQP+L
Sbjct: 43 LVRNGPTEHPGAKYVIRDTGERIDLRYHKRAGEIPLHYGYKVERHINDGDVVIFNRQPSL 102
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH++RV+P+STFR+NL +
Sbjct: 103 HKMSMMGHKIRVMPYSTFRLNLSV 126
>gi|83320416|gb|ABC02835.1| RNA polymerase II largest subunit, partial [Physoderma maydis]
Length = 748
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 133/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ EL+R G ++PGAKY++R+NGERIDLRF SDL LQ G+ VERH+ DGDL+IFNR
Sbjct: 316 RLLELIRNGPLEHPGAKYVIRENGERIDLRFARNKSDLTLQHGWIVERHVNDGDLIIFNR 375
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQSME RAEV+ I +
Sbjct: 376 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSMEARAEVQEICM 435
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ N+P MGIVQDTL +RK TKRD FL K
Sbjct: 436 VPKQIVSPQANKPCMGIVQDTLCGIRKFTKRDTFLSK 472
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/110 (75%), Positives = 98/110 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGDL+IFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 361 VERHVNDGDLIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 420
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQSME RAEV+ I + P+QI++PQ N+P MGIVQDTL +RK TKRD FL
Sbjct: 421 PQSMEARAEVQEICMVPKQIVSPQANKPCMGIVQDTLCGIRKFTKRDTFL 470
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ EL+R G ++PGAKY++R+NGERIDLRF SDL LQ G+ VERH+ DGDL+IFNRQ
Sbjct: 317 LLELIRNGPLEHPGAKYVIRENGERIDLRFARNKSDLTLQHGWIVERHVNDGDLIIFNRQ 376
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 377 PSLHKMSMMGHRIRVMPYSTFRLNLSV 403
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 134/157 (85%), Gaps = 1/157 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFH-PKPSDLHLQCGYKVERHIRDGDLVIFN 144
RM+ELVRRG ++PGAKY++RD+G RIDLRF + ++HL+ GY+VERHI DGD VIFN
Sbjct: 417 RMYELVRRGALEHPGAKYVIRDDGTRIDLRFSRTQGQEIHLEPGYRVERHIVDGDPVIFN 476
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHKMSMMGHR+RVLPWSTFR+NLS T+PYNADFDGDEMNLHVPQ++ETRAEV I
Sbjct: 477 RQPSLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNLHVPQNLETRAEVTEIM 536
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
RQI+TP NRPVMGIVQDTLT RK+TKRD F++
Sbjct: 537 SVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIE 573
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD VIFNRQP+LHKMSMMGHR+RVLPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 462 RVERHIVDGDPVIFNRQPSLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNLH 521
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ++ETRAEV I RQI+TP NRPVMGIVQDTLT RK+TKRD F++
Sbjct: 522 VPQNLETRAEVTEIMSVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIE 573
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 76/88 (86%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFH-PKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M+ELVRRG ++PGAKY++RD+G RIDLRF + ++HL+ GY+VERHI DGD VIFNR
Sbjct: 418 MYELVRRGALEHPGAKYVIRDDGTRIDLRFSRTQGQEIHLEPGYRVERHIVDGDPVIFNR 477
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMSMMGHR+RVLPWSTFR+NL +
Sbjct: 478 QPSLHKMSMMGHRIRVLPWSTFRLNLSV 505
>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
Length = 868
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 140/166 (84%), Gaps = 4/166 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ +++ ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERH
Sbjct: 193 VTPYNIYQLQ----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERH 248
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
IRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 249 IRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSE 308
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 309 ETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 354
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 244 RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 304 VPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 354
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERHIRDGD+VIFNRQP+
Sbjct: 203 ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPS 262
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 263 LHKMSMMGHRIRVMPYSTFRLNLSV 287
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 141/168 (83%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ +++ ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERH
Sbjct: 386 VTPYNIYQLQ----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERH 441
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
IRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 442 IRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSE 501
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL +
Sbjct: 502 ETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR 549
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 437 RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 497 VPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 547
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERHIRDGD+VIFNRQP+
Sbjct: 396 ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 456 LHKMSMMGHRIRVMPYSTFRLNLSV 480
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 134/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM++L+R G ++YPGA+YI+R +G R DLR+ K SDLHL+ GY+VERHI+DGD V+FNR
Sbjct: 301 RMYQLIRAGPTEYPGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNR 360
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+M HR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE I
Sbjct: 361 QPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSFETRAEASEIIA 420
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL A +KMT RD F++K
Sbjct: 421 VPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEK 457
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD V+FNRQP+LHKMS+M HR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 345 RVERHIQDGDYVLFNRQPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 404
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE I PRQI++PQ+NRPVMGIVQDTL A +KMT RD F++
Sbjct: 405 VPQSFETRAEASEIIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIE 456
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M++L+R G ++YPGA+YI+R +G R DLR+ K SDLHL+ GY+VERHI+DGD V+FNRQ
Sbjct: 302 MYQLIRAGPTEYPGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNRQ 361
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+M HR++V+P+STFR+NL +
Sbjct: 362 PSLHKMSIMAHRIKVMPYSTFRLNLSV 388
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/172 (65%), Positives = 142/172 (82%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + N+ ++ ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G++
Sbjct: 376 RILTYPETVTPYNIHKLQELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWR 435
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 436 VERHITDGDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRINLSVTPPYNADFDGDEMNLHV 495
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL V+K+T+RD FL K
Sbjct: 496 PQSEETRAEIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFLSK 547
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS T PYNADFDGDEMNLH
Sbjct: 435 RVERHITDGDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRINLSVTPPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL V+K+T+RD FL
Sbjct: 495 VPQSEETRAEIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFL 545
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G++VERHI DGD+VIFNRQP+
Sbjct: 394 ELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPS 453
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 454 LHKMSMMGHRVKVMPYSTFRINLSV 478
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/154 (70%), Positives = 135/154 (87%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELVR G +++PGAKY++RD GERIDL+ H + ++ LQ G+KVERH+ DGD+VIFNRQP+
Sbjct: 161 ELVRNGPTEHPGAKYVIRDTGERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPS 220
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ETRAE+ I + P+
Sbjct: 221 LHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETRAEITEICMVPK 280
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL AVRK TKRD FL +
Sbjct: 281 QIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSR 314
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 202 KVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 261
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL AVRK TKRD FL
Sbjct: 262 VPQSVETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFL 312
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD GERIDL+ H + ++ LQ G+KVERH+ DGD+VIFNRQP+
Sbjct: 161 ELVRNGPTEHPGAKYVIRDTGERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPS 220
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 221 LHKMSMMGHKVRVMPYSTFRLNLSV 245
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM EL+RRG ++PGAKY++R++G+R DLRF K +D HL+ GYKVERH++DGD+VIFNR
Sbjct: 364 RMRELIRRGPDEHPGAKYVIREDGQRFDLRFVKKLTDTHLEVGYKVERHVQDGDVVIFNR 423
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS T+PYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 424 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQTLETRAEVIEIMM 483
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQD+L R TKRD F+++
Sbjct: 484 VPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIER 520
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 109/127 (85%), Gaps = 5/127 (3%)
Query: 230 VRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
V+K+T D L+ KVERH++DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS T
Sbjct: 395 VKKLT--DTHLEVGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVT 452
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+PYNADFDGDEMNLHVPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQD+L R T
Sbjct: 453 TPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFT 512
Query: 347 KRDVFLD 353
KRD F++
Sbjct: 513 KRDTFIE 519
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 77/87 (88%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+RRG ++PGAKY++R++G+R DLRF K +D HL+ GYKVERH++DGD+VIFNRQ
Sbjct: 365 MRELIRRGPDEHPGAKYVIREDGQRFDLRFVKKLTDTHLEVGYKVERHVQDGDVVIFNRQ 424
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 425 PSLHKMSMMGHRIKVMPYSTFRLNLSV 451
>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
Length = 868
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWKVERHIVDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMTKRD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFID 355
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMTKRD F+D
Sbjct: 304 VPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFID 355
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWKVERHIVDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 135/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD GERIDLR++ + D+ L GY+VERHI DGD+VIFNR
Sbjct: 329 KLQELVRNGPTEHPGAKYVIRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNR 388
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRVRVLP+STFR+NLS TSPYNADFDGDEMN+HVPQS E+RAE++ I +
Sbjct: 389 QPSLHKMSMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICM 448
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQII+PQ N PVMGIVQDTL A+RK T+RD F+ K
Sbjct: 449 VPRQIISPQANSPVMGIVQDTLCAIRKFTRRDNFMAK 485
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+VIFNRQP+LHKMSMMGHRVRVLP+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 373 RVERHIMDGDVVIFNRQPSLHKMSMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMH 432
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ I + PRQII+PQ N PVMGIVQDTL A+RK T+RD F+
Sbjct: 433 VPQSEESRAEIKEICMVPRQIISPQANSPVMGIVQDTLCAIRKFTRRDNFM 483
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 73/83 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD GERIDLR++ + D+ L GY+VERHI DGD+VIFNRQP+
Sbjct: 332 ELVRNGPTEHPGAKYVIRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPS 391
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVRVLP+STFR+NL
Sbjct: 392 LHKMSMMGHRVRVLPYSTFRLNL 414
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/164 (70%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
Query: 79 STFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 138
+ F +N M + V RG +Q+PGAKYI+RD+G+RIDLR DL+LQ GY VERH++D
Sbjct: 395 TNFNINT-MKQYVDRGPNQHPGAKYIIRDDGQRIDLRHARNAMDLNLQPGYIVERHLKDD 453
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
D++IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQS+ TRA
Sbjct: 454 DVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSLGTRA 513
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
EVE I + R I+TPQ NRPVMGI+QDTLTA+RK+T RD F++K
Sbjct: 514 EVEEIMMVQRNILTPQANRPVMGIIQDTLTAIRKLTFRDTFIEK 557
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 100/111 (90%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++D D++IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 446 VERHLKDDDVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHV 505
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ TRAEVE I + R I+TPQ NRPVMGI+QDTLTA+RK+T RD F++
Sbjct: 506 PQSLGTRAEVEEIMMVQRNILTPQANRPVMGIIQDTLTAIRKLTFRDTFIE 556
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M + V RG +Q+PGAKYI+RD+G+RIDLR DL+LQ GY VERH++D D++IFNRQ
Sbjct: 402 MKQYVDRGPNQHPGAKYIIRDDGQRIDLRHARNAMDLNLQPGYIVERHLKDDDVIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 462 PTLHKMSMMGHRVKVLPWSTFRMNLSV 488
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 109/165 (66%), Positives = 140/165 (84%), Gaps = 1/165 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P R+N+ + ELVR G S++PGAKY++RD GERIDL+ + + ++ LQ G+KVERHI
Sbjct: 142 PELVTRLNIDHLQELVRNGPSEHPGAKYVIRDTGERIDLKHYKRAGEVRLQIGWKVERHI 201
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
DGD+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+H+PQS+E
Sbjct: 202 DDGDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHIPQSVE 261
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
T+AE+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 262 TKAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 306
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 196 KVERHIDDGDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS+ET+AE+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 256 IPQSVETKAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 306
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G S++PGAKY++RD GERIDL+ + + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 155 ELVRNGPSEHPGAKYVIRDTGERIDLKHYKRAGEVRLQIGWKVERHIDDGDIVIFNRQPS 214
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 215 LHKMSMMGHRVRVMPYSTFRLNLSV 239
>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
Length = 872
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 108/156 (69%), Positives = 134/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIDDGDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RK+TKRD F++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVE 355
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIDDGDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QII+PQ+N+PVMGIVQDTL +RK+TKRD F++
Sbjct: 304 VPQSEETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVE 355
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIDDGDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|83320474|gb|ABC02864.1| RNA polymerase II largest subunit, partial [Olpidium brassicae]
Length = 585
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 135/159 (84%), Gaps = 1/159 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVR G +++PGAK+++RD GERIDLR+H + D+ LQ G+KVERH+ DGD++IFNR
Sbjct: 152 RMQELVRNGPNEHPGAKFVIRDTGERIDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNR 211
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCT-SPYNADFDGDEMNLHVPQSMETRAEVENIH 204
QP+LHKMSMMGH+VRV+P+STFR+NLS + SPYNADFDGDEMN+HVPQS+E RAE+ I
Sbjct: 212 QPSLHKMSMMGHKVRVMPYSTFRLNLSVSPSPYNADFDGDEMNMHVPQSIEARAEINEIC 271
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
+ P+QI+ P N+P MGIVQDTL VRKMTKRDVFLDK
Sbjct: 272 MVPKQIVAPAANKPCMGIVQDTLCGVRKMTKRDVFLDKA 310
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT-SPYNADFDGDEMNL 300
KVERH+ DGD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS + SPYNADFDGDEMN+
Sbjct: 196 KVERHLVDGDVIIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVSPSPYNADFDGDEMNM 255
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+E RAE+ I + P+QI+ P N+P MGIVQDTL VRKMTKRDVFLD
Sbjct: 256 HVPQSIEARAEINEICMVPKQIVAPAANKPCMGIVQDTLCGVRKMTKRDVFLD 308
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVR G +++PGAK+++RD GERIDLR+H + D+ LQ G+KVERH+ DGD++IFNRQ
Sbjct: 153 MQELVRNGPNEHPGAKFVIRDTGERIDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNRQ 212
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 213 PSLHKMSMMGHKVRVMPYSTFRLNLSV 239
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 133/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM +L+ G ++PGAKYI+RD+G R DLR+ KPS+LHL GYKVERH++DGD+VIFNR
Sbjct: 304 RMRQLIENGPMKHPGAKYILRDDGTRTDLRYAKKPSELHLDYGYKVERHVQDGDVVIFNR 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+R+LPWSTFR+NLS T+PYNADFDGDEMN+HV QS ETRAE+E I +
Sbjct: 364 QPSLHKMSMMGHRIRILPWSTFRLNLSVTTPYNADFDGDEMNMHVAQSPETRAEIEEIMM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N+PVMGIVQD+L + TKRD F+++
Sbjct: 424 VPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIER 460
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD+VIFNRQP+LHKMSMMGHR+R+LPWSTFR+NLS T+PYNADFDGDEMN+H
Sbjct: 348 KVERHVQDGDVVIFNRQPSLHKMSMMGHRIRILPWSTFRLNLSVTTPYNADFDGDEMNMH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
V QS ETRAE+E I + PRQI++PQ N+PVMGIVQD+L + TKRD F++
Sbjct: 408 VAQSPETRAEIEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIE 459
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +L+ G ++PGAKYI+RD+G R DLR+ KPS+LHL GYKVERH++DGD+VIFNRQ
Sbjct: 305 MRQLIENGPMKHPGAKYILRDDGTRTDLRYAKKPSELHLDYGYKVERHVQDGDVVIFNRQ 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR+R+LPWSTFR+NL +
Sbjct: 365 PSLHKMSMMGHRIRILPWSTFRLNLSV 391
>gi|83320470|gb|ABC02862.1| RNA polymerase II largest subunit, partial [Phycomyces
blakesleeanus]
Length = 564
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 132/153 (86%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI DGD+VIFNRQP+L
Sbjct: 156 LVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDGDVVIFNRQPSL 215
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAEV I + P+Q
Sbjct: 216 HKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQ 275
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I++PQ+N+PVMGIVQDTL +RK T RD F+ K
Sbjct: 276 IVSPQSNKPVMGIVQDTLCGIRKFTLRDCFITK 308
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 196 RVERHINDGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAEV I + P+QI++PQ+N+PVMGIVQDTL +RK T RD F+
Sbjct: 256 VPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFI 306
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 73/84 (86%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI DGD+VIFNRQP+L
Sbjct: 156 LVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDGDVVIFNRQPSL 215
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHRVRV+P+STFR+NL +
Sbjct: 216 HKMSMMGHRVRVMPYSTFRLNLSV 239
>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
Length = 873
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/156 (69%), Positives = 134/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI+D D V+FNR
Sbjct: 200 RLTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWKVERHIQDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKM+KRD FL+
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDNFLE 355
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIQDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QI++PQ+N+PVMGIVQDTL +RKM+KRD FL+
Sbjct: 304 VPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDNFLE 355
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI+D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWKVERHIQDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 239 bits (611), Expect = 1e-60, Method: Composition-based stats.
Identities = 105/156 (67%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 389 KLTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNR 448
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+E I
Sbjct: 449 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICA 508
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 509 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 544
Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 433 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 492
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+E I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 493 VPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 544
Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/83 (65%), Positives = 72/83 (86%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQP+
Sbjct: 392 ELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPS 451
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+V+P+STFRMNL
Sbjct: 452 LHKMSMMAHRVKVMPYSTFRMNL 474
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 132/156 (84%), Gaps = 2/156 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +YPGA+YI+RD GERIDLR+ K D+ LQ G+ VERH+RDGD V+FNR
Sbjct: 400 RLTELVRNGPVEYPGARYIIRDTGERIDLRY--KRGDVSLQIGWVVERHLRDGDYVLFNR 457
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE++ I
Sbjct: 458 QPSLHKMSMMSHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAW 517
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQI++PQ N+PVMGIVQDTL + KMT+RD+FLD
Sbjct: 518 VPRQIVSPQANKPVMGIVQDTLCGIYKMTQRDIFLD 553
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 99/111 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RDGD V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 443 VERHLRDGDYVLFNRQPSLHKMSMMSHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 502
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE++ I PRQI++PQ N+PVMGIVQDTL + KMT+RD+FLD
Sbjct: 503 PQSEETRAELKEIAWVPRQIVSPQANKPVMGIVQDTLCGIYKMTQRDIFLD 553
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +YPGA+YI+RD GERIDLR+ K D+ LQ G+ VERH+RDGD V+FNRQ
Sbjct: 401 LTELVRNGPVEYPGARYIIRDTGERIDLRY--KRGDVSLQIGWVVERHLRDGDYVLFNRQ 458
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 459 PSLHKMSMMSHRVRVMPYSTFRLNLSV 485
>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
Length = 872
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLSELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RK+T+RD FL+
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLE 355
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RK+T+RD FL+
Sbjct: 304 VPQSEETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLE 355
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LSELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1785
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 134/156 (85%), Gaps = 1/156 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV+ G + YPGAK+IVR+NG+RIDLR+HPK SDL LQ GY VERH+ + D VIFNRQPT
Sbjct: 295 KLVQNG-TLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPT 353
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+PQS+ET+AE+ + R
Sbjct: 354 LHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSR 413
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ITPQ N+PVMGIVQDTLTAV KMT+RDVFL++ E
Sbjct: 414 LVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSE 449
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 97/111 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ + D VIFNRQPTLHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 336 VERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHL 395
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ET+AE+ + R +ITPQ N+PVMGIVQDTLTAV KMT+RDVFL+
Sbjct: 396 PQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLN 446
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G + YPGAK+IVR+NG+RIDLR+HPK SDL LQ GY VERH+ + D VIFNRQPT
Sbjct: 295 KLVQNG-TLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPT 353
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+VLPWSTFR+NL +
Sbjct: 354 LHKMSMMCHRVKVLPWSTFRLNLSV 378
>gi|83320468|gb|ABC02861.1| RNA polymerase II largest subunit, partial [Orphella haysii]
Length = 750
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 134/152 (88%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
+VR G +++PGAKY++RD GERIDLR++ + D+ LQ GY+VERH+ D D+VIFNRQP+L
Sbjct: 334 MVRNGPTEHPGAKYVIRDTGERIDLRYNKRGGDIPLQIGYRVERHLVDNDVVIFNRQPSL 393
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE++ I + PRQ
Sbjct: 394 HKMSMMGHRVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIKEICMVPRQ 453
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
I++PQ+N+PVMGIVQDTL A+RK TKRD FL+
Sbjct: 454 IVSPQSNKPVMGIVQDTLAAIRKFTKRDCFLE 485
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 102/112 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 374 RVERHLVDNDVVIFNRQPSLHKMSMMGHRVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 433
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE++ I + PRQI++PQ+N+PVMGIVQDTL A+RK TKRD FL+
Sbjct: 434 VPQSEETRAEIKEICMVPRQIVSPQSNKPVMGIVQDTLAAIRKFTKRDCFLE 485
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 73/84 (86%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+VR G +++PGAKY++RD GERIDLR++ + D+ LQ GY+VERH+ D D+VIFNRQP+L
Sbjct: 334 MVRNGPTEHPGAKYVIRDTGERIDLRYNKRGGDIPLQIGYRVERHLVDNDVVIFNRQPSL 393
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHRVRV+P+STFR+NL +
Sbjct: 394 HKMSMMGHRVRVMPFSTFRLNLSV 417
>gi|336126930|gb|AEI17890.1| RNA polymerase II largest subunit [fungal sp. FSU 1945]
Length = 463
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/168 (66%), Positives = 138/168 (82%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ R+ + LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERH
Sbjct: 34 VTPYNIDRLQV----LVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERH 89
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I D D+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+
Sbjct: 90 INDDDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSL 149
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAEV I + P+QI++PQ+N+PVMGIVQDTL +RK T RD FL K
Sbjct: 150 ETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFLTK 197
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 85 RVERHINDDDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 144
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAEV I + P+QI++PQ+N+PVMGIVQDTL +RK T RD FL
Sbjct: 145 VPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFL 195
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 72/84 (85%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI D D+VIFNRQP+L
Sbjct: 45 LVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSL 104
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHRVRV+P+STFR+NL +
Sbjct: 105 HKMSMMGHRVRVMPYSTFRLNLSV 128
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 130/155 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G ++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD V+FNR
Sbjct: 200 KLSELVRNGPDEHPGAKYVIRDTGERIDLRYHKRAGDIRLQYGWKVERHIVDGDAVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR E+ I +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRTELSQICM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P QII+PQ+NRPVMGIVQDTL VRKMT RD F+
Sbjct: 320 VPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFI 354
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIVDGDAVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETR E+ I + P QII+PQ+NRPVMGIVQDTL VRKMT RD F+
Sbjct: 304 VPQSEETRTELSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFI 354
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G ++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD V+FNRQ
Sbjct: 201 LSELVRNGPDEHPGAKYVIRDTGERIDLRYHKRAGDIRLQYGWKVERHIVDGDAVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD +FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIDDGDPXLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RK+TKRD F++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVE 355
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIDDGDPXLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QII+PQ+N+PVMGIVQDTL +RK+TKRD F++
Sbjct: 304 VPQSEETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVE 355
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERHI DGD +FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHIDDGDPXLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
[Schistosoma mansoni]
Length = 1900
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 134/156 (85%), Gaps = 1/156 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV+ G + YPGAK+IVR+NG+RIDLR+HPK SDL LQ GY VERH+ + D VIFNRQPT
Sbjct: 410 KLVQNG-TLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPT 468
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+PQS+ET+AE+ + R
Sbjct: 469 LHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSR 528
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ITPQ N+PVMGIVQDTLTAV KMT+RDVFL++ E
Sbjct: 529 LVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSE 564
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 97/111 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ + D VIFNRQPTLHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 451 VERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHL 510
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ET+AE+ + R +ITPQ N+PVMGIVQDTLTAV KMT+RDVFL+
Sbjct: 511 PQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLN 561
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G + YPGAK+IVR+NG+RIDLR+HPK SDL LQ GY VERH+ + D VIFNRQPT
Sbjct: 410 KLVQNG-TLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPT 468
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+VLPWSTFR+NL +
Sbjct: 469 LHKMSMMCHRVKVLPWSTFRLNLSV 493
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V+ G ++PGAKY++RDNGERIDLR+ D+HLQ GYKVERH+ D D+VIFNR
Sbjct: 324 RLQKYVQNGPMEHPGAKYVIRDNGERIDLRYSKVGRDIHLQPGYKVERHLMDDDVVIFNR 383
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE++ + +
Sbjct: 384 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETRAEIQELCM 443
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI+TPQ N P MGIVQDTL A+RK T+RD FL K
Sbjct: 444 VPKQIVTPQKNGPCMGIVQDTLCAIRKFTRRDCFLSK 480
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 3/120 (2%)
Query: 236 RDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 292
RD+ L KVERH+ D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNAD
Sbjct: 359 RDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNAD 418
Query: 293 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
FDGDEMNLHVPQS ETRAE++ + + P+QI+TPQ N P MGIVQDTL A+RK T+RD FL
Sbjct: 419 FDGDEMNLHVPQSYETRAEIQELCMVPKQIVTPQKNGPCMGIVQDTLCAIRKFTRRDCFL 478
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V+ G ++PGAKY++RDNGERIDLR+ D+HLQ GYKVERH+ D D+VIFNRQP+LH
Sbjct: 329 VQNGPMEHPGAKYVIRDNGERIDLRYSKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLH 388
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMSMMGHRV+V+P+STFR+NL +
Sbjct: 389 KMSMMGHRVKVMPYSTFRLNLSV 411
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 133/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI D D+VIFNR
Sbjct: 313 KLQALVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAEV I +
Sbjct: 373 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICM 432
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK T RD F+ K
Sbjct: 433 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTK 469
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 357 RVERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 416
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAEV I + P+QI++PQ+N+PVMGIVQDTL +RK T RD F+
Sbjct: 417 VPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFM 467
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI D D+VIFNRQP+L
Sbjct: 317 LVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSL 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHRV+V+P+STFR+NL +
Sbjct: 377 HKMSMMGHRVKVMPYSTFRLNLSV 400
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 238 bits (606), Expect = 4e-60, Method: Composition-based stats.
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+VR G +++PGAKY++R+NG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 312 KLTEMVRNGPNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 372 QPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSELCA 431
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 432 VPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 467
Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 356 KVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 415
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QII+PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 416 VPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 467
Score = 129 bits (323), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/83 (65%), Positives = 72/83 (86%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E+VR G +++PGAKY++R+NG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQP+
Sbjct: 315 EMVRNGPNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPS 374
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+V+P+STFRMNL
Sbjct: 375 LHKMSMMCHRVKVMPYSTFRMNL 397
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 131/152 (86%), Gaps = 1/152 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G +++PGAKY+ +DNG+RIDL+F + +HLQ GYKVERHI DGDLVIFNRQP+
Sbjct: 124 QLVNNGPNEHPGAKYVFKDNGDRIDLKF-ARSGSVHLQVGYKVERHINDGDLVIFNRQPS 182
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ET+AEV+ I + P+
Sbjct: 183 LHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPK 242
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
QI++PQ N+PVMGIVQDTL +RK TKRD FL
Sbjct: 243 QIVSPQANKPVMGIVQDTLCGIRKFTKRDCFL 274
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGDLVIFNRQP+LHKMSMMGH+++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 164 KVERHINDGDLVIFNRQPSLHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 223
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AEV+ I + P+QI++PQ N+PVMGIVQDTL +RK TKRD FL
Sbjct: 224 VPQSYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFL 274
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGAKY+ +DNG+RIDL+F + +HLQ GYKVERHI DGDLVIFNRQP+
Sbjct: 124 QLVNNGPNEHPGAKYVFKDNGDRIDLKF-ARSGSVHLQVGYKVERHINDGDLVIFNRQPS 182
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+++V+P+STFR+NL +
Sbjct: 183 LHKMSMMGHKIKVMPYSTFRLNLSV 207
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ V+ G +++PGAKY++RDNGERIDLR+ + D+HLQ GYKVERH+ D DL+IFNR
Sbjct: 307 RLMACVQNGPTEHPGAKYVIRDNGERIDLRYSKRGGDIHLQTGYKVERHLVDDDLIIFNR 366
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+HVPQ+ ETRAEV+ + +
Sbjct: 367 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQTHETRAEVQELCM 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N P MGIVQD+L VRK TKRD FL K
Sbjct: 427 VPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFLPK 463
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D DL+IFNRQP+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 351 KVERHLVDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + PRQI++PQ N P MGIVQD+L VRK TKRD FL
Sbjct: 411 VPQTHETRAEVQELCMVPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFL 461
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ V+ G +++PGAKY++RDNGERIDLR+ + D+HLQ GYKVERH+ D DL+IFNRQ
Sbjct: 308 LMACVQNGPTEHPGAKYVIRDNGERIDLRYSKRGGDIHLQTGYKVERHLVDDDLIIFNRQ 367
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 368 PSLHKMSMMGHRVKVMPYSTFRLNLSV 394
>gi|384491453|gb|EIE82649.1| RNA polymerase I [Rhizopus delemar RA 99-880]
Length = 651
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 134/157 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI D D+VIFNR
Sbjct: 365 KLQQLVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNR 424
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAEV I +
Sbjct: 425 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICM 484
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK T RD FL K
Sbjct: 485 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFLSK 521
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 409 RVERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 468
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ETRAEV I + P+QI++PQ+N+PVMGIVQDTL +RK T RD FL
Sbjct: 469 VPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFL 519
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G ++PGAKY++RDNGERIDLR+ + ++ LQ GY+VERHI D D+VIFNRQP+
Sbjct: 368 QLVRNGPLEHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPS 427
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 428 LHKMSMMGHRVKVMPYSTFRLNLSV 452
>gi|397135862|gb|AFO11426.1| RNA polymerase I, partial [Dekkera bruxellensis]
Length = 793
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 134/155 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +QYPGA+Y++RD+GERIDLRF+ + D+ LQ G+KVERH+ DGD V+FNR
Sbjct: 144 QLTQLVRNGPNQYPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNR 203
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+VRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS ET+AE+E I
Sbjct: 204 QPSLHKMSMMCHKVRVMPFSTFRINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEICA 263
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PRQI++PQ+N+PVMGIVQDTL VRKMT RD F+
Sbjct: 264 VPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFV 298
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMSMM H+VRV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 188 KVERHLMDGDPVLFNRQPSLHKMSMMCHKVRVMPFSTFRINLSVTTPYNADFDGDEMNMH 247
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AE+E I PRQI++PQ+N+PVMGIVQDTL VRKMT RD F+
Sbjct: 248 VPQSYETKAELEEICAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFV 298
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +QYPGA+Y++RD+GERIDLRF+ + D+ LQ G+KVERH+ DGD V+FNRQ
Sbjct: 145 LTQLVRNGPNQYPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNRQ 204
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+VRV+P+STFR+NL +
Sbjct: 205 PSLHKMSMMCHKVRVMPFSTFRINLSV 231
>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
Length = 869
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 110/156 (70%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+ VERH D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWXVERHXLDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSXICM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QIITPQ+N+PVMGIVQDTL VRKMTKRD F D
Sbjct: 320 VPLQIITPQSNKPVMGIVQDTLCGVRKMTKRDTFCD 355
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 245 VERHXLDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 304
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I + P QIITPQ+N+PVMGIVQDTL VRKMTKRD F D
Sbjct: 305 PQSEETRAELSXICMVPLQIITPQSNKPVMGIVQDTLCGVRKMTKRDTFCD 355
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+ VERH D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYIIRDTGERIDLRYHKRAGDIALQYGWXVERHXLDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 131/152 (86%), Gaps = 1/152 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G +++PGAKY+ +DNG+RIDL+F + +HLQ GYKVERHI DGDLVIFNRQP+
Sbjct: 310 QLVNNGPNEHPGAKYVFKDNGDRIDLKF-ARSGSVHLQVGYKVERHINDGDLVIFNRQPS 368
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ET+AEV+ I + P+
Sbjct: 369 LHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPK 428
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
QI++PQ N+PVMGIVQDTL +RK TKRD FL
Sbjct: 429 QIVSPQANKPVMGIVQDTLCGIRKFTKRDCFL 460
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGDLVIFNRQP+LHKMSMMGH+++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 350 KVERHINDGDLVIFNRQPSLHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AEV+ I + P+QI++PQ N+PVMGIVQDTL +RK TKRD FL
Sbjct: 410 VPQSYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFL 460
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGAKY+ +DNG+RIDL+F + +HLQ GYKVERHI DGDLVIFNRQP+
Sbjct: 310 QLVNNGPNEHPGAKYVFKDNGDRIDLKF-ARSGSVHLQVGYKVERHINDGDLVIFNRQPS 368
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+++V+P+STFR+NL +
Sbjct: 369 LHKMSMMGHKIKVMPYSTFRLNLSV 393
>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
Length = 866
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+E I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 355
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+E I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
Length = 869
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKYI+RD+GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 199 RLTEYVRNGPNEHPGAKYIIRDSGERIDLRYHKRVGDIQLQYGWKVERHLMDNDPVLFNR 258
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 259 QPSLHKMSMMAHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 318
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD FLD
Sbjct: 319 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLD 354
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 243 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLH 302
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL +RKMT RD FLD
Sbjct: 303 VPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLD 354
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKYI+RD+GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 200 LTEYVRNGPNEHPGAKYIIRDSGERIDLRYHKRVGDIQLQYGWKVERHLMDNDPVLFNRQ 259
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 260 PSLHKMSMMAHRVKVMPFSTFRLNLSV 286
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G++VERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDITLQYGWRVERHIVDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMTKRD FL+
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLN 355
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 RVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL +RKMTKRD FL+
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLN 355
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G++VERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDITLQYGWRVERHIVDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 136/168 (80%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIR 136
P + + N+ + + + + YPGAK+IVR+NG+RIDLR+HPK +DL LQ GY VERH+
Sbjct: 352 PENVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHML 411
Query: 137 DGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMET 196
+ D VIFNRQPTLHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+PQS+ET
Sbjct: 412 NDDYVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVET 471
Query: 197 RAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+AE+ + R +ITPQ N+PVM IVQDTLTAV KMT+RDVFL++ E
Sbjct: 472 KAEISQLARVSRLVITPQANKPVMSIVQDTLTAVNKMTQRDVFLNRAE 519
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ + D VIFNRQPTLHKMSMM HRV+VLPWSTFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 406 VERHMLNDDYVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHL 465
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ET+AE+ + R +ITPQ N+PVM IVQDTLTAV KMT+RDVFL+
Sbjct: 466 PQSVETKAEISQLARVSRLVITPQANKPVMSIVQDTLTAVNKMTQRDVFLN 516
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G + YPGAK+IVR+NG+RIDLR+HPK +DL LQ GY VERH+ + D VIFNRQPT
Sbjct: 365 KLVQNG-TLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDYVIFNRQPT 423
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+VLPWSTFR+NL +
Sbjct: 424 LHKMSMMCHRVKVLPWSTFRLNLSV 448
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+S+FRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSSFRMNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKM+KRD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFID 355
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+S+FRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL +RKM+KRD F+D
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFID 355
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+S+FRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSSFRMNLSV 287
>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
Length = 873
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYIIRDTGERIDLRYHKRVGDIALQYGWKVERHIVDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS T+PYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMTKRD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFIE 355
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 244 KVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QI++PQ+N+PVMGIVQDTL +RKMTKRD F++
Sbjct: 304 VPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFIE 355
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKYI+RD GERIDLR+H + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYIIRDTGERIDLRYHKRVGDIALQYGWKVERHIVDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
Length = 870
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 133/155 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +QYPGA+Y++RD+GERIDLRF+ + D+ LQ G+KVERH+ DGD V+FNR
Sbjct: 397 QLTQLVRNGPNQYPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNR 456
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+ RV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS ET+AE+E I
Sbjct: 457 QPSLHKMSMMCHKXRVMPFSTFRINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEICA 516
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PRQI++PQ+N+PVMGIVQDTL VRKMT RD F+
Sbjct: 517 VPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFV 551
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMSMM H+ RV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 441 KVERHLMDGDPVLFNRQPSLHKMSMMCHKXRVMPFSTFRINLSVTTPYNADFDGDEMNMH 500
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AE+E I PRQI++PQ+N+PVMGIVQDTL VRKMT RD F+
Sbjct: 501 VPQSYETKAELEEICAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSFV 551
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +QYPGA+Y++RD+GERIDLRF+ + D+ LQ G+KVERH+ DGD V+FNRQ
Sbjct: 398 LTQLVRNGPNQYPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNRQ 457
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+ RV+P+STFR+NL +
Sbjct: 458 PSLHKMSMMCHKXRVMPFSTFRINLSV 484
>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
Length = 872
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFID 355
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 304 VPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFID 355
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 134/167 (80%), Gaps = 1/167 (0%)
Query: 75 VLPWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
P + NL M ++VR G + +PGAK+++RD GERIDLR+ + D+HLQ GYKVER
Sbjct: 295 TFPETVTPYNLEMLSQMVRNGPNVHPGAKHVIRDTGERIDLRYSKRGGDIHLQYGYKVER 354
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+ D D +IFNRQP+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 355 HLLDDDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 414
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
ETRAE++ + + P+QI++PQ N PVMGIVQDTL +RK TKRD FL
Sbjct: 415 HETRAEIQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFL 461
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D +IFNRQP+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 351 KVERHLLDDDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ + + P+QI++PQ N PVMGIVQDTL +RK TKRD FL
Sbjct: 411 VPQSHETRAEIQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFL 461
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ++VR G + +PGAK+++RD GERIDLR+ + D+HLQ GYKVERH+ D D +IFNRQ
Sbjct: 308 LSQMVRNGPNVHPGAKHVIRDTGERIDLRYSKRGGDIHLQYGYKVERHLLDDDYIIFNRQ 367
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRV+++P+STFR+NL +
Sbjct: 368 PSLHKMSMMGHRVKIMPYSTFRLNLSV 394
>gi|359294821|gb|AEV21781.1| RPB1, partial [Mortierella hyalina]
Length = 459
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 36 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 93
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 94 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 153
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 154 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 190
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 65 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 124
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 125 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 184
Query: 349 DVFL 352
D FL
Sbjct: 185 DCFL 188
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 39 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 96
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 97 LHKMSMMGHKIRVMPYSTFRLNLSV 121
>gi|359294819|gb|AEV21780.1| RPB1, partial [Mortierella hyalina]
Length = 461
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 192
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 67 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 126
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 127 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 186
Query: 349 DVFL 352
D FL
Sbjct: 187 DCFL 190
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 392 KLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 452 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 512 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFID 547
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 496 VPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFID 547
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 393 LTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 453 PSLHKMSMMAHRVRVMPYSTFRLNLSV 479
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 132/158 (83%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ E+VR G +++PGAKY++R+NG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEMVRNGPNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQ 260
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM HRVRV+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 261 PSLHKMSMMCHRVRVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSELCAV 320
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P QII+PQ+N+PVMGIVQDTL VRKMT RD FL+ E
Sbjct: 321 PLQIISPQSNKPVMGIVQDTLCGVRKMTLRDSFLEYSE 358
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMCHRVRVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QII+PQ+N+PVMGIVQDTL VRKMT RD FL+
Sbjct: 304 VPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDSFLE 355
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E+VR G +++PGAKY++R+NG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEMVRNGPNEHPGAKYVIRENGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFRMNL +
Sbjct: 261 PSLHKMSMMCHRVRVMPYSTFRMNLSV 287
>gi|359294825|gb|AEV21783.1| RPB1, partial [Mortierella wolfii]
Length = 464
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 41 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 98
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 99 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAELTEICM 158
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 159 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFLSK 195
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSP
Sbjct: 70 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSP 129
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKR
Sbjct: 130 YNADFDGDEMNLHVPQSVETRAELTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKR 189
Query: 349 DVFL 352
D FL
Sbjct: 190 DCFL 193
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 44 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 101
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 102 LHKMSMMGHRIRVMPYSTFRLNLSV 126
>gi|397135960|gb|AFO11475.1| RNA polymerase I, partial [Dipodascus albidus]
Length = 870
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTQYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICL 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QIITPQ+N+P MGIVQDTL +RK+TKRD F+D
Sbjct: 320 VPLQIITPQSNKPCMGIVQDTLCGIRKLTKRDSFID 355
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I + P QIITPQ+N+P MGIVQDTL +RK+TKRD F+D
Sbjct: 304 VPQSEETRAELSQICLVPLQIITPQSNKPCMGIVQDTLCGIRKLTKRDSFID 355
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTQYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|359294827|gb|AEV21784.1| RPB1, partial [Mortierella wolfii]
gi|359294829|gb|AEV21785.1| RPB1, partial [Mortierella wolfii]
Length = 467
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 44 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 101
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 102 QPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAELTEICM 161
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 162 VPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFLSK 198
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSP
Sbjct: 73 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSP 132
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKR
Sbjct: 133 YNADFDGDEMNLHVPQSVETRAELTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKR 192
Query: 349 DVFL 352
D FL
Sbjct: 193 DCFL 196
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 47 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 104
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 105 LHKMSMMGHRIRVMPYSTFRLNLSV 129
>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
Length = 870
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 143/183 (78%), Gaps = 7/183 (3%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G +++PGAKYI+RD G+RIDLR++ + D+ LQ G+KVERH+ DGD V+FNR
Sbjct: 199 KLTELVMNGPNEHPGAKYIIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDGDPVLFNR 258
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 259 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELLNICA 318
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD-----KVERHIRDGDLVIFNRQPT 260
P QI++PQ+N+P MGIVQDTL VRKMT RD F+D + I+D D VI QPT
Sbjct: 319 VPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIDYDQMMNILYWIKDWDGVI--PQPT 376
Query: 261 LHK 263
+ K
Sbjct: 377 ILK 379
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 243 KVERHLMDGDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 302
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RD F+D
Sbjct: 303 VPQSEETRAELLNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFID 354
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV G +++PGAKYI+RD G+RIDLR++ + D+ LQ G+KVERH+ DGD V+FNRQ
Sbjct: 200 LTELVMNGPNEHPGAKYIIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDGDPVLFNRQ 259
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 260 PSLHKMSMMCHRVKVMPYSTFRLNLSV 286
>gi|359294823|gb|AEV21782.1| RPB1, partial [Mortierella alpina]
Length = 461
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGIRKFTKRDCFLTK 192
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 67 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 126
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL +RK TKR
Sbjct: 127 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGIRKFTKR 186
Query: 349 DVFL 352
D FL
Sbjct: 187 DCFL 190
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|359294807|gb|AEV21774.1| RPB1, partial [Gamsiella multidivaricata]
Length = 464
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 44 KLQELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 101
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 102 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 161
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 162 VPKQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 198
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 73 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 132
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + P+QI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 133 YNADFDGDEMNLHVPQSVETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCGVRKFTKR 192
Query: 349 DVFL 352
D FL
Sbjct: 193 DCFL 196
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 47 ELVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 104
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 105 LHKMSMMGHKIRVMPYSTFRLNLSV 129
>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
Length = 870
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+VR G +++PGAKY++RDNG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEMVRNGPNEHPGAKYVIRDNGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQIAA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSYETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E+VR G +++PGAKY++RDNG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEMVRNGPNEHPGAKYVIRDNGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMCHRVKVMPYSTFRMNLSV 287
>gi|397135890|gb|AFO11440.1| RNA polymerase I, partial [Priceomyces castillae]
Length = 872
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+PVMGIVQDTL VRKMT RD+F+D
Sbjct: 320 VPLQIVSAQSNKPVMGIVQDTLCGVRKMTLRDIFID 355
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++ Q+N+PVMGIVQDTL VRKMT RD+F+D
Sbjct: 304 VPQSPETRAELSEICAVPLQIVSAQSNKPVMGIVQDTLCGVRKMTLRDIFID 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 135/160 (84%), Gaps = 2/160 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGA+Y++RD+G+RIDLR+H + D+ LQ G+KVERHI DGD V+FNR
Sbjct: 200 RLSELVRNGPNEHPGARYVIRDSGDRIDLRYHKRAGDIALQFGWKVERHINDGDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E RAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEEARAELSQLCL 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL--DKV 243
P QI++PQ+N+PVMGIVQDTL +RKMT RD F+ DKV
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDKV 359
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHINDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E RAE+ + + P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSEEARAELSQLCLVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGA+Y++RD+G+RIDLR+H + D+ LQ G+KVERHI DGD V+FNRQ
Sbjct: 201 LSELVRNGPNEHPGARYVIRDSGDRIDLRYHKRAGDIALQFGWKVERHINDGDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
Length = 871
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RK++ RD FLD
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLD 355
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RK++ RD FLD
Sbjct: 304 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLD 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFID 355
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 304 VPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFID 355
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDVVLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT RDVF++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIE 355
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RDVF++
Sbjct: 304 VPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIE 355
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDVVLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
Length = 870
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVLNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+E I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+E I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVLNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIE 355
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIE 355
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RDNG+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDNGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 316 KLQKLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 373
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 374 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 433
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 434 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 470
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 345 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 404
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 405 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 464
Query: 349 DVFL 352
D FL
Sbjct: 465 DCFL 468
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 319 KLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 376
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 377 LHKMSMMGHKIRVMPYSTFRLNLSV 401
>gi|359294813|gb|AEV21777.1| RPB1, partial [Mortierella verticillata]
Length = 453
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQKLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 192
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/121 (75%), Positives = 106/121 (87%), Gaps = 3/121 (2%)
Query: 235 KRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSPYNA
Sbjct: 70 KREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNA 129
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKRD F
Sbjct: 130 DFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCF 189
Query: 352 L 352
L
Sbjct: 190 L 190
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 KLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 131/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
++V+ G +++PGAKY++RDNGER+DLR+ + D+HLQ GYKVERH+ D D +IFNRQP+
Sbjct: 401 QMVQNGPNEHPGAKYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPS 460
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE++ + + P
Sbjct: 461 LHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPL 520
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ N PVMGIVQDTL +RK +KRD FL +
Sbjct: 521 QIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFLKR 554
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D +IFNRQP+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 442 KVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ + + P QI++PQ N PVMGIVQDTL +RK +KRD FL
Sbjct: 502 VPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFL 552
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
++V+ G +++PGAKY++RDNGER+DLR+ + D+HLQ GYKVERH+ D D +IFNRQP+
Sbjct: 401 QMVQNGPNEHPGAKYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPS 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+++P+STFR+NL +
Sbjct: 461 LHKMSMMGHRVKIMPYSTFRLNLSV 485
>gi|359294809|gb|AEV21775.1| RPB1, partial [Mortierella verticillata]
Length = 461
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQKLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 192
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 67 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 126
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 127 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 186
Query: 349 DVFL 352
D FL
Sbjct: 187 DCFL 190
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 KLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|359294817|gb|AEV21779.1| RPB1, partial [Mortierella verticillata]
Length = 461
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQKLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 192
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 67 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 126
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 127 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 186
Query: 349 DVFL 352
D FL
Sbjct: 187 DCFL 190
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 KLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 131/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
++V+ G +++PGAKY++RDNGER+DLR+ + D+HLQ GYKVERH+ D D +IFNRQP+
Sbjct: 304 QMVQNGPNEHPGAKYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPS 363
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE++ + + P
Sbjct: 364 LHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPL 423
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ N PVMGIVQDTL +RK +KRD FL +
Sbjct: 424 QIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFLKR 457
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D +IFNRQP+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 345 KVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 404
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ + + P QI++PQ N PVMGIVQDTL +RK +KRD FL
Sbjct: 405 VPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFL 455
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
++V+ G +++PGAKY++RDNGER+DLR+ + D+HLQ GYKVERH+ D D +IFNRQP+
Sbjct: 304 QMVQNGPNEHPGAKYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPS 363
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+++P+STFR+NL +
Sbjct: 364 LHKMSMMGHRVKIMPYSTFRLNLSV 388
>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
Length = 870
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVE 355
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVE 355
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RDNG+RIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 388 RLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNR 447
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 448 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 507
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 508 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 543
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 432 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 492 VPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 543
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RDNG+RIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 389 LTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQ 448
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 449 PSLHKMSMMAHRVKVMPYSTFRLNLSV 475
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 134/155 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ++V+ G +++PGAKY+++D+G+RIDLR++ + D+HLQ GY+VERH+ D D+VIFNR
Sbjct: 314 KMQQMVQNGPTEHPGAKYVIKDDGQRIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNR 373
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ET+AE+ + +
Sbjct: 374 QPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCM 433
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P+QI++PQ N P+MGIVQDTL +RK TKRD FL
Sbjct: 434 VPKQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFL 468
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 358 RVERHLMDDDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 417
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AE+ + + P+QI++PQ N P+MGIVQDTL +RK TKRD FL
Sbjct: 418 VPQSYETKAELMELCMVPKQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFL 468
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 77/87 (88%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ++V+ G +++PGAKY+++D+G+RIDLR++ + D+HLQ GY+VERH+ D D+VIFNRQ
Sbjct: 315 MQQMVQNGPTEHPGAKYVIKDDGQRIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNRQ 374
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 375 PSLHKMSMMGHRVRVMPYSTFRLNLSV 401
>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
Length = 871
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIQLQYGWKVERHLIDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E++N+
Sbjct: 260 QPSLHKMSMMAHRVKVMPFSTFRINLSVTSPYNADFDGDEMNLHVPQSHETRSELKNLAA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL VRKMT +D+F++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIFIE 355
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLIDEDPVLFNRQPSLHKMSMMAHRVKVMPFSTFRINLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E++N+ P QII+PQ+N+PVMGIVQDTL VRKMT +D+F++
Sbjct: 304 VPQSHETRSELKNLAAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIFIE 355
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIQLQYGWKVERHLIDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPFSTFRINLSV 287
>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
Length = 853
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + VR G +++PGAKYIVRD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTQYVRNGPNEHPGAKYIVRDTGERIDLRYHKRVGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLAGIRKMTLRDTFID 355
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/199 (52%), Positives = 131/199 (65%), Gaps = 13/199 (6%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSME---TRAEV---ENIHVTPRQIITPQNNRP-VM 220
R+N S + D + D + VP+S+ T E NIH + + N P
Sbjct: 157 RVNFSARTVITGDPNLDLDQVGVPKSIARTLTYPEAVTPYNIHRLTQYVRNGPNEHPGAK 216
Query: 221 GIVQDTLTAVR-KMTKR--DVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 274
IV+DT + + KR D+ L KVERH+ D D V+FNRQP+LHKMSMM HRV+V+
Sbjct: 217 YIVRDTGERIDLRYHKRVGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVM 276
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + P QI++PQ+N+PVMGI
Sbjct: 277 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGI 336
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTL +RKMT RD F+D
Sbjct: 337 VQDTLAGIRKMTLRDTFID 355
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + VR G +++PGAKYIVRD GERIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTQYVRNGPNEHPGAKYIVRDTGERIDLRYHKRVGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|83320418|gb|ABC02836.1| RNA polymerase II largest subunit, partial [Rhizoclosmatium sp.
JEL347-h]
Length = 573
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 130/155 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ V+ G +++PGAKY++RDNG+RIDL++ + DL LQ GYKVERH+ D DL+IFNR
Sbjct: 153 RLTACVQNGPTEHPGAKYVIRDNGDRIDLKYSKRGGDLQLQYGYKVERHLVDDDLIIFNR 212
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 213 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQTHETRAEVQELCM 272
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PRQI++PQ N P MGIVQDTL VRK TKRD FL
Sbjct: 273 VPRQIVSPQKNAPCMGIVQDTLCGVRKFTKRDNFL 307
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D DL+IFNRQP+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 197 KVERHLVDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLH 256
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + PRQI++PQ N P MGIVQDTL VRK TKRD FL
Sbjct: 257 VPQTHETRAEVQELCMVPRQIVSPQKNAPCMGIVQDTLCGVRKFTKRDNFL 307
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ V+ G +++PGAKY++RDNG+RIDL++ + DL LQ GYKVERH+ D DL+IFNRQ
Sbjct: 154 LTACVQNGPTEHPGAKYVIRDNGDRIDLKYSKRGGDLQLQYGYKVERHLVDDDLIIFNRQ 213
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 214 PSLHKMSMMGHRVKVMPYSTFRLNLSV 240
>gi|397135814|gb|AFO11402.1| RNA polymerase I, partial [Ambrosiozyma monospora]
Length = 870
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS T+PYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMCHRVKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSYETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGARKMTLRDIFIE 355
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS T+PYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTTPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL RKMT RD+F++
Sbjct: 304 VPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGARKMTLRDIFIE 355
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMCHRVKVMPYSTFRMNLSV 287
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M+EL+R G +++PGAKYI+RD+G+R+DLRF K SDLHL+ GYKVERHI+DGD++IFNR
Sbjct: 316 KMYELIRNGPTEHPGAKYIIRDDGQRLDLRFARKASDLHLEYGYKVERHIQDGDVIIFNR 375
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+++P+STFR+NLS T+PYNADFDGDEMN+HVPQ+ RAEV + +
Sbjct: 376 QPSLHKMSMMGHKVKIMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQTPGARAEVIELMM 435
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI+T Q+N+PV+GIVQDTL +T+RD F++K
Sbjct: 436 VPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIEK 472
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD++IFNRQP+LHKMSMMGH+V+++P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 360 KVERHIQDGDVIIFNRQPSLHKMSMMGHKVKIMPYSTFRLNLSVTTPYNADFDGDEMNMH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ RAEV + + P+QI+T Q+N+PV+GIVQDTL +T+RD F++
Sbjct: 420 VPQTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIE 471
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 80/87 (91%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M+EL+R G +++PGAKYI+RD+G+R+DLRF K SDLHL+ GYKVERHI+DGD++IFNRQ
Sbjct: 317 MYELIRNGPTEHPGAKYIIRDDGQRLDLRFARKASDLHLEYGYKVERHIQDGDVIIFNRQ 376
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH+V+++P+STFR+NL +
Sbjct: 377 PSLHKMSMMGHKVKIMPYSTFRLNLSV 403
>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
Length = 872
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RDNG+RIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 355
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 355
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RDNG+RIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|359294811|gb|AEV21776.1| RPB1, partial [Mortierella verticillata]
Length = 335
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNR
Sbjct: 38 KLQKLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNR 95
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH++RV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+ETRAE+ I +
Sbjct: 96 QPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICM 155
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+N+PVMGIVQDTL VRK TKRD FL K
Sbjct: 156 VPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTK 192
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 3/124 (2%)
Query: 232 KMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+ KR+V L KVERHI DGD+VIFNRQP+LHKMSMMGH++RV+P+STFR+NLS TSP
Sbjct: 67 RWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSP 126
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS+ETRAE+ I + PRQI++PQ+N+PVMGIVQDTL VRK TKR
Sbjct: 127 YNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKR 186
Query: 349 DVFL 352
D FL
Sbjct: 187 DCFL 190
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++RD+G+RIDLR++ + ++ LQ G+KVERHI DGD+VIFNRQP+
Sbjct: 41 KLVRNGPTEHPGAVYVIRDDGQRIDLRWNKR--EVPLQLGWKVERHINDGDVVIFNRQPS 98
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH++RV+P+STFR+NL +
Sbjct: 99 LHKMSMMGHKIRVMPYSTFRLNLSV 123
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+P+MGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVE 355
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QII+PQ+N+P+MGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVE 355
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 507 VPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIIDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 320 VPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 355
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIIDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 355
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 346 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNR 405
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 406 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAA 465
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT RD F+D
Sbjct: 466 VPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFID 501
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 390 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 449
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RD F+D
Sbjct: 450 VPQSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFID 501
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 347 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQ 406
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 407 PSLHKMSMMAHRVKVMPYSTFRLNLSV 433
>gi|149845600|emb|CAL00209.1| RNA polymerase II large subunit [Glomus proliferum]
Length = 477
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 132/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 196
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE++ I + P+
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPK 256
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 257 QIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 290
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 178 KVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 237
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 238 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 288
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 196
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSV 221
>gi|149845602|emb|CAL00210.1| RNA polymerase II large subunit [Glomus proliferum]
Length = 478
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 132/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 196
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE++ I + P+
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPK 256
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 257 QIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 290
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 178 KVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 237
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 238 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 288
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 196
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSV 221
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 447 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 491 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVRVMPYSTFRLNLSV 474
>gi|149845592|emb|CAL00204.1| RNA polymerase II large subunit [Funneliformis mosseae]
Length = 496
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 139 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 197
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 198 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 257
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 258 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 299
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 187 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 246
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 247 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 297
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 146 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 205
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 206 LHKMSMMGHKVRVMPFSTFRLNLSV 230
>gi|397135864|gb|AFO11427.1| RNA polymerase I, partial [Kodamaea ohmeri]
Length = 870
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 136/172 (79%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNLR-MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + N++ + LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+K
Sbjct: 406 RILTYPETVTPYNIKKLSALVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEIALQYGWK 465
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD VIFNRQP+LHK SMMGHRVRVLP+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 466 VERHIVDGDFVIFNRQPSLHKESMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHV 525
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAEV + + P QI++PQ N P+MGIVQDTL V K+ +RDVFLD+
Sbjct: 526 PQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKLCRRDVFLDR 577
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD VIFNRQP+LHK SMMGHRVRVLP+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 465 KVERHIVDGDFVIFNRQPSLHKESMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMH 524
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P QI++PQ N P+MGIVQDTL V K+ +RDVFLD
Sbjct: 525 VPQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKLCRRDVFLD 576
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD VIFNRQP+L
Sbjct: 425 LVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEIALQYGWKVERHIVDGDFVIFNRQPSL 484
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRVLP+STFR+NL +
Sbjct: 485 HKESMMGHRVRVLPYSTFRLNLSV 508
>gi|149845597|emb|CAL00208.1| RNA polymerase II large subunit [Glomus proliferum]
Length = 498
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 137/162 (84%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 139 FNVDL-LQELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDI 197
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 198 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 257
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 258 KEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 299
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 187 KVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 246
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 247 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 297
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 146 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 205
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 206 LHKMSMMGHKVRVMPFSTFRLNLSV 230
>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
Length = 860
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR+H + D+ LQ G++VERH+ D D V+FNR
Sbjct: 198 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIDLQYGWRVERHLMDDDPVLFNR 257
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 258 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCS 317
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 318 VPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFID 353
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 242 RVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 301
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL VRKMT RD F+D
Sbjct: 302 VPQSEETRAELSQLCSVPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFID 353
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR+H + D+ LQ G++VERH+ D D V+FNRQ
Sbjct: 199 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIDLQYGWRVERHLMDDDPVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 259 PSLHKMSMMAHRVKVMPYSTFRLNLSV 285
>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
Length = 871
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RDNG+R+DLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPNEHPGAKYVIRDNGDRLDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE 355
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE 355
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RDNG+R+DLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDNGDRLDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|83320432|gb|ABC02843.1| RNA polymerase II largest subunit, partial [Dimargaris
bacillispora]
Length = 753
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 133/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + VR G +Q+PGAKYIVRDNG+RIDLR++ ++ LQ G++VERH+ GDLVIFNR
Sbjct: 321 QLQQAVRNGPTQHPGAKYIVRDNGDRIDLRYNKLGGEIPLQYGWRVERHLVSGDLVIFNR 380
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+ I +
Sbjct: 381 QPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIREICM 440
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ I++PQ N+PVMGIVQDTL AVR+ TKRD FL K
Sbjct: 441 VPKNIVSPQANKPVMGIVQDTLCAVRRFTKRDTFLTK 477
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ GDLVIFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 365 RVERHLVSGDLVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 424
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ I + P+ I++PQ N+PVMGIVQDTL AVR+ TKRD FL
Sbjct: 425 VPQSEETRAEIREICMVPKNIVSPQANKPVMGIVQDTLCAVRRFTKRDTFL 475
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ VR G +Q+PGAKYIVRDNG+RIDLR++ ++ LQ G++VERH+ GDLVIFNRQP+
Sbjct: 324 QAVRNGPTQHPGAKYIVRDNGDRIDLRYNKLGGEIPLQYGWRVERHLVSGDLVIFNRQPS 383
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 384 LHKMSMMGHKVRVMPYSTFRLNLSV 408
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
Length = 867
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G +++PGAKY++RDNG+RIDLR + + D+ L G+KVERH+ D D V+FNR
Sbjct: 200 RLTELVRNGPNEHPGAKYVIRDNGDRIDLRXNKRAGDIALXYGWKVERHLMDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFID 355
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F+D
Sbjct: 304 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFID 355
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RDNG+RIDLR + + D+ L G+KVERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPNEHPGAKYVIRDNGDRIDLRXNKRAGDIALXYGWKVERHLMDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
Length = 872
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Query: 76 LPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
P R N+ +M LV G + +PGA+ I+RD+G+RIDLRF K SD HL+ GY++ERH
Sbjct: 306 FPEMVTRFNIAQMRRLVANGPNVHPGARTIIRDDGKRIDLRFVKKSSDQHLEVGYRIERH 365
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I DGD+++FNRQP+LHKMS+M H++RV+PWSTFR+NLSCT+PYNADFDGDEMNLHVPQSM
Sbjct: 366 IHDGDVILFNRQPSLHKMSIMAHKIRVMPWSTFRLNLSCTTPYNADFDGDEMNLHVPQSM 425
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
TRAE I + PRQI++PQ N+PV+GIVQDTL K T RD FLDK
Sbjct: 426 MTRAEALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKA 474
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
++ERHI DGD+++FNRQP+LHKMS+M H++RV+PWSTFR+NLSCT+PYNADFDGDEMNLH
Sbjct: 361 RIERHIHDGDVILFNRQPSLHKMSIMAHKIRVMPWSTFRLNLSCTTPYNADFDGDEMNLH 420
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQSM TRAE I + PRQI++PQ N+PV+GIVQDTL K T RD FLD
Sbjct: 421 VPQSMMTRAEALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLD 472
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LV G + +PGA+ I+RD+G+RIDLRF K SD HL+ GY++ERHI DGD+++FNRQ
Sbjct: 318 MRRLVANGPNVHPGARTIIRDDGKRIDLRFVKKSSDQHLEVGYRIERHIHDGDVILFNRQ 377
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M H++RV+PWSTFR+NL
Sbjct: 378 PSLHKMSIMAHKIRVMPWSTFRLNL 402
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/170 (64%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ +M ELVR G +PGAKY++RDNGERIDLR H +P ++ LQ G+K
Sbjct: 311 RTLTFPETVNSYNINKMHELVRNGPDIHPGAKYVIRDNGERIDLRHHKQPQNIQLQVGWK 370
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK S MGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 371 VERHIVDGDYIIFNRQPSLHKESRMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 430
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAEV N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 PQSEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 480
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK S MGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 370 KVERHIVDGDYIIFNRQPSLHKESRMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 429
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 430 VPQSEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 480
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVR G +PGAKY++RDNGERIDLR H +P ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 327 MHELVRNGPDIHPGAKYVIRDNGERIDLRHHKQPQNIQLQVGWKVERHIVDGDYIIFNRQ 386
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK S MGHRVRV+P+STFR+NL +
Sbjct: 387 PSLHKESRMGHRVRVMPYSTFRLNLSV 413
>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
Length = 870
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+VR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEMVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+V+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMCHKVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD FL+
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLE 355
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM H+V+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMCHKVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL VRKMT RD FL+
Sbjct: 304 VPQSYETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLE 355
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E+VR G +++PGAKY++RD+G+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEMVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+V+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMCHKVKVMPYSTFRMNLSV 287
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 133/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G +Q+PGAKY++RDNG+R+DLRF +L LQ G+ VERH+ DGD++IFNR
Sbjct: 311 KLQELVHNGPTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+E +AE++ + +
Sbjct: 371 QPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLEAKAEIQQLCM 430
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P QII+PQ+N+PVMGIVQDTL + K T+RD F+DK
Sbjct: 431 VPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDK 467
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 99/111 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 356 VERHLDDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 415
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+E +AE++ + + P QII+PQ+N+PVMGIVQDTL + K T+RD F+D
Sbjct: 416 PQSLEAKAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMD 466
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G +Q+PGAKY++RDNG+R+DLRF +L LQ G+ VERH+ DGD++IFNRQP+
Sbjct: 314 ELVHNGPTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPS 373
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V+V+P+STFR+NL +
Sbjct: 374 LHKMSMMGHKVKVMPYSTFRLNLSV 398
>gi|358441935|gb|AEU11318.1| RPB1 [Funneliformis geosporum]
Length = 617
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|358441937|gb|AEU11319.1| RPB1 [Funneliformis caledonium]
Length = 617
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 346 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 405
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 406 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 465
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 466 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 501
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 390 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 449
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 450 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 501
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 347 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 406
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 407 PSLHKMSMMAHRVKVMPYSTFRLNLSV 433
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +L++ G +++PGA+Y++RDNGERIDLR+H + DL LQ G+KVERHI DGD +IFNR
Sbjct: 327 KLHQLIKNGPNEHPGARYVIRDNGERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNR 386
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 387 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 446
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 447 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQ 483
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 371 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 430
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 431 VPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 482
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +L++ G +++PGA+Y++RDNGERIDLR+H + DL LQ G+KVERHI DGD +IFNRQ
Sbjct: 328 LHQLIKNGPNEHPGARYVIRDNGERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNRQ 387
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 388 PSLHKESMMGHRVRVMPYSTFRLNLSV 414
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 131/155 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGAKY++RD GERIDLR+H + ++ LQ G++VERHI D D V+FNR
Sbjct: 199 KLTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEITLQYGWRVERHIVDDDPVLFNR 258
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 259 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELTQICA 318
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P QI++PQ+N+PVMGIVQDTL +RK+TKRD FL
Sbjct: 319 VPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDNFL 353
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 243 RVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 302
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RK+TKRD FL
Sbjct: 303 VPQSEETRAELTQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDNFL 353
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD GERIDLR+H + ++ LQ G++VERHI D D V+FNRQ
Sbjct: 200 LTQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEITLQYGWRVERHIVDDDPVLFNRQ 259
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 260 PSLHKMSMMAHRVKVMPYSTFRLNLSV 286
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 135/168 (80%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D HLQ G+ VER
Sbjct: 308 RVTPYNIGYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAHLQYGWIVER 362
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 363 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 422
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK+T RD FLD
Sbjct: 423 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLD 470
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+
Sbjct: 360 VERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHI 419
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK+T RD FLD
Sbjct: 420 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLD 470
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D HLQ G+ VERH++DGD V+FNRQP+
Sbjct: 319 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAHLQYGWIVERHLKDGDFVLFNRQPS 377
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 378 LHKMSMMSHRVKLMPYSTFRLNLSV 402
>gi|358441931|gb|AEU11316.1| RPB1 [Funneliformis mosseae]
gi|358441941|gb|AEU11321.1| RPB1 [Funneliformis mosseae]
Length = 603
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|358441933|gb|AEU11317.1| RPB1 [Funneliformis mosseae]
Length = 617
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
Length = 1000
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G + +PGAK ++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 318 RLHQLVRNGPNDHPGAKCVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNR 377
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHR+RVLP+STFR++LS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 378 QPSLHKESMMGHRIRVLPYSTFRLHLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 437
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P QI++PQ N P+MGIVQDTL V KMT+RDVFLD+
Sbjct: 438 VPLQIVSPQRNGPLMGIVQDTLCGVYKMTRRDVFLDR 474
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHR+RVLP+STFR++LS TSPYNADFDGDEMNLH
Sbjct: 362 KVERHIIDGDFIIFNRQPSLHKESMMGHRIRVLPYSTFRLHLSVTSPYNADFDGDEMNLH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P QI++PQ N P+MGIVQDTL V KMT+RDVFLD
Sbjct: 422 VPQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKMTRRDVFLD 473
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G + +PGAK ++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 319 LHQLVRNGPNDHPGAKCVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQ 378
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHR+RVLP+STFR++L +
Sbjct: 379 PSLHKESMMGHRIRVLPYSTFRLHLSV 405
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDVQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLE 542
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLE 542
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDVQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVVPYSTFRLNLSV 474
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 131/155 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGAKY++RD GERIDLR+H + ++ LQ G++VERHI D D V+FNR
Sbjct: 200 KLSQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEISLQYGWRVERHIVDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELRMLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P QI++PQ+N+PVMGIVQD+L VRKMTKRD FL
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDSLCGVRKMTKRDSFL 354
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 RVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + P QI++PQ+N+PVMGIVQD+L VRKMTKRD FL
Sbjct: 304 VPQSEETRAELRMLCAVPLQIVSPQSNKPVMGIVQDSLCGVRKMTKRDSFL 354
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD GERIDLR+H + ++ LQ G++VERHI D D V+FNRQ
Sbjct: 201 LSQLVRNGPNEHPGAKYVIRDTGERIDLRYHKRAGEISLQYGWRVERHIVDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 491 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVRVMPYSTFRLNLSV 474
>gi|358441939|gb|AEU11320.1| RPB1 [Funneliformis mosseae]
Length = 535
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+Y++RD GERIDLRFH + DL LQ G+KVERHI DGD +IFNR
Sbjct: 302 KLHQLVKNGPNEHPGARYVIRDGGERIDLRFHRRAGDLVLQYGWKVERHIVDGDFIIFNR 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 362 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 422 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 457
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 346 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 406 VPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 457
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+Y++RD GERIDLRFH + DL LQ G+KVERHI DGD +IFNRQ
Sbjct: 303 LHQLVKNGPNEHPGARYVIRDGGERIDLRFHRRAGDLVLQYGWKVERHIVDGDFIIFNRQ 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 363 PSLHKESMMGHRVRVMPYSTFRLNLSV 389
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA+Y+ RD GERIDL++H + D+ LQ G+ VERH+ D D V+FNR
Sbjct: 198 KLTELVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYGWIVERHLMDDDPVLFNR 257
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 258 QPSLHKMSMMAHRVKVMPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEETRAELSQICA 317
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P+MGIVQDTL VRKMT RDVF++
Sbjct: 318 VPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIE 353
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 243 VERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSATSPYNADFDGDEMNLHV 302
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I P QI++PQ+N+P+MGIVQDTL VRKMT RDVF++
Sbjct: 303 PQSEETRAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIE 353
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 70/85 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGA+Y+ RD GERIDL++H + D+ LQ G+ VERH+ D D V+FNRQ
Sbjct: 199 LTELVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYGWIVERHLMDDDPVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMM HRV+V+P+STFRMNL
Sbjct: 259 PSLHKMSMMAHRVKVMPYSTFRMNL 283
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 491 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVRVMPYSTFRLNLSV 474
>gi|358441929|gb|AEU11315.1| RPB1 [Funneliformis coronatum]
Length = 534
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 133/154 (86%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE++ I + P+
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPK 460
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 461 QIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSK 494
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFL 492
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHKVRVMPFSTFRLNLSV 425
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKYI+RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+QI++ Q+N+P MGIVQDTL VRKMT RD F++
Sbjct: 320 VPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE 355
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++ Q+N+P MGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKYI+RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 69 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 128
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 129 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 188
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 189 VPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIE 224
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 113 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 172
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 173 VPQSEETRAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIE 224
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 70 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 129
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 130 PSLHKMSMMAHRVKVMPYSTFRLNLSV 156
>gi|149845589|emb|CAL00203.1| RNA polymerase II large subunit [Rhizophagus intraradices]
Length = 487
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 131/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 146 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 205
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H+PQS+ET+AE+ I + P+
Sbjct: 206 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPK 265
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 266 QIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 299
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 187 KVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 246
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS+ET+AE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 247 IPQSVETKAEIREICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 297
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 146 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 205
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 206 LHKMSMMGHKVRVMPFSTFRLNLSV 230
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKYI+RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+QI++ Q+N+P MGIVQDTL VRKMT RD F++
Sbjct: 507 VPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE 542
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++ Q+N+P MGIVQDTL VRKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIE 542
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKYI+RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G +++PGAKY++RD+GERIDLR H + D++L G+KVERHI DGD +IFNR
Sbjct: 321 KLHQLVRNGPNEHPGAKYVIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDFIIFNR 380
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 381 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 440
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 441 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 477
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 365 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 424
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 425 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 475
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+GERIDLR H + D++L G+KVERHI DGD +IFNRQ
Sbjct: 322 LHQLVRNGPNEHPGAKYVIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDFIIFNRQ 381
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 382 PSLHKESMMGHRVRVMPYSTFRLNLSV 408
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 133/169 (78%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ +LVR G ++PGAKYI+RD GERIDLR++ D LQ G+ VER
Sbjct: 302 RVTPFNIHKLQ----QLVRNGPDEHPGAKYILRDTGERIDLRYNKNAGDTPLQYGWTVER 357
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+++GD+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 358 HLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 417
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I + PRQI+ PQ N+P MGIVQD L +RK T RD F+ K
Sbjct: 418 EETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAK 466
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+++GD+VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 355 VERHLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 414
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS ETRAE+ I + PRQI+ PQ N+P MGIVQD L +RK T RD F+
Sbjct: 415 PQSEETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFM 464
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G ++PGAKYI+RD GERIDLR++ D LQ G+ VERH+++GD+VIFNRQP+
Sbjct: 313 QLVRNGPDEHPGAKYILRDTGERIDLRYNKNAGDTPLQYGWTVERHLQNGDVVIFNRQPS 372
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 373 LHKMSMMGHRVRVMPYSTFRLNLSV 397
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 135/164 (82%), Gaps = 2/164 (1%)
Query: 82 RMNLR-MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
R N++ + ELVRRG +YPGA+Y++RD GERIDL+++ K SD LQ G+ VERH++DGD
Sbjct: 395 RYNIQYLTELVRRGPQEYPGARYVIRDTGERIDLKYN-KRSDSLLQFGWIVERHLKDGDY 453
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMNLHVPQS ETRAE+
Sbjct: 454 VLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAEL 513
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
I PRQI++PQ N+PVMGIVQDTL +RK T RD F+D ++
Sbjct: 514 SQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFVDWIQ 557
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 444 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNLHV 503
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD F+D
Sbjct: 504 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFVD 554
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVRRG +YPGA+Y++RD GERIDL+++ K SD LQ G+ VERH++DGD V+FNRQ
Sbjct: 401 LTELVRRGPQEYPGARYVIRDTGERIDLKYN-KRSDSLLQFGWIVERHLKDGDYVLFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+++P+STFR+NL +
Sbjct: 460 PSLHKMSMMSHRVKIMPYSTFRLNLSV 486
>gi|397135816|gb|AFO11403.1| RNA polymerase I, partial [Candida boidinii]
Length = 870
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 131/157 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+Y++RD+GERIDLRFH + DL LQ G++VERHI DGD +IFNR
Sbjct: 321 KLHQLVKNGPNEHPGARYVIRDSGERIDLRFHRRAGDLVLQYGWQVERHIVDGDFIIFNR 380
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 381 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCM 440
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL +
Sbjct: 441 VPLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVFLSE 477
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 365 QVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 424
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 425 VPQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVFL 475
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+Y++RD+GERIDLRFH + DL LQ G++VERHI DGD +IFNRQ
Sbjct: 322 LHQLVKNGPNEHPGARYVIRDSGERIDLRFHRRAGDLVLQYGWQVERHIVDGDFIIFNRQ 381
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 382 PSLHKESMMGHRVRVMPYSTFRLNLSV 408
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 320 VPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIE 355
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIE 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID 542
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 491 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID 542
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|358850892|gb|AEU11314.1| RPB1, partial [Glomus deserticola]
Length = 603
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 81 FRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
F ++L + ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD+
Sbjct: 334 FNVDL-LQELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDV 392
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
+IFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS+ET+AE+
Sbjct: 393 IIFNRQPSLHKMSMMGHRVRVMPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEI 452
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL K
Sbjct: 453 KEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDSFLSK 494
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 103/111 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 382 KVERHINNGDVIIFNRQPSLHKMSMMGHRVRVMPFSTFRLNLSVTTPYNADFDGDEMNMH 441
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD FL
Sbjct: 442 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDSFL 492
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 341 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 400
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 401 LHKMSMMGHRVRVMPFSTFRLNLSV 425
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G S++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNR
Sbjct: 381 KLTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNR 440
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 441 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 500
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 501 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 536
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 425 RVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 484
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 485 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 536
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G S++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNRQ
Sbjct: 382 LTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNRQ 441
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 442 PSLHKMSMMAHRVKVMPYSTFRLNLSV 468
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCS 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE 542
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE 542
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
punctatus]
Length = 792
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 103/155 (66%), Positives = 132/155 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E+VR+G ++ GAKY+++D+G+RIDLR++ + D+HLQ GY+VERH+ D D+VIFNR
Sbjct: 316 RLQEMVRKGPLEHGGAKYVIKDDGQRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNR 375
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR NLS TSPYNADFDGDEMNLHVPQS ET+AE+ + +
Sbjct: 376 QPSLHKMSMMGHRVKVMPYSTFRXNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCM 435
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P+QI++PQ N PVMGIVQDTL +RK TKRD FL
Sbjct: 436 VPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFL 470
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR NLS TSPYNADFDGDEMNLH
Sbjct: 360 RVERHLMDNDIVIFNRQPSLHKMSMMGHRVKVMPYSTFRXNLSVTSPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ET+AE+ + + P+QI++PQ N PVMGIVQDTL +RK TKRD FL
Sbjct: 420 VPQSYETKAELMELCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFL 470
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E+VR+G ++ GAKY+++D+G+RIDLR++ + D+HLQ GY+VERH+ D D+VIFNRQP+
Sbjct: 319 EMVRKGPLEHGGAKYVIKDDGQRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNRQPS 378
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR NL +
Sbjct: 379 LHKMSMMGHRVKVMPYSTFRXNLSV 403
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD GERIDLR H + S++ LQ G+KVERH+ DGD +IFNR
Sbjct: 325 KLHELVRNGPNEHPGAKYVIRDTGERIDLRHHKRASEITLQYGWKVERHLMDGDFIIFNR 384
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV N+ +
Sbjct: 385 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVMNLCM 444
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N+P+MGI+QDTL + K+ ++DVF+ K
Sbjct: 445 VPLNIVSPQGNKPLMGIIQDTLCGIYKICRKDVFITK 481
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 369 KVERHLMDGDFIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 428
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV N+ + P I++PQ N+P+MGI+QDTL + K+ ++DVF+
Sbjct: 429 VPQSEETRAEVMNLCMVPLNIVSPQGNKPLMGIIQDTLCGIYKICRKDVFI 479
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD GERIDLR H + S++ LQ G+KVERH+ DGD +IFNRQ
Sbjct: 326 LHELVRNGPNEHPGAKYVIRDTGERIDLRHHKRASEITLQYGWKVERHLMDGDFIIFNRQ 385
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 386 PSLHKESMMGHRVKVMPYSTFRLNLSV 412
>gi|83320440|gb|ABC02847.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 585
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 132/154 (85%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 155 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 214
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE++ I + P+
Sbjct: 215 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPK 274
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL A+RK TKRD F K
Sbjct: 275 QIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFXSK 308
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 102/110 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 196 KVERHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
VPQS+ET+AE++ I + P+QI++PQ+N+PVMGIVQDTL A+RK TKRD F
Sbjct: 256 VPQSVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCF 305
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G + +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 155 ELVKNGPTVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPS 214
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 215 LHKMSMMGHKVRVMPFSTFRLNLSV 239
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
Query: 76 LPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
LP R N+ + L++ G S +PGAKY+++ NG+RIDLR+ DL+LQ G+ VERH
Sbjct: 306 LPEIVTRYNIGHLQALLKNGPSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERH 365
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+
Sbjct: 366 INDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSV 425
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
E +AE++ + + P QI++PQ N+PVMGIVQDTL +RK T+RD FL K
Sbjct: 426 EAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLTK 473
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 98/110 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 362 VERHINDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 421
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS+E +AE++ + + P QI++PQ N+PVMGIVQDTL +RK T+RD FL
Sbjct: 422 PQSVEAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFL 471
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L++ G S +PGAKY+++ NG+RIDLR+ DL+LQ G+ VERHI DGD++IFNRQP+L
Sbjct: 321 LLKNGPSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERHINDGDIIIFNRQPSL 380
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH+V+V+P+STFR+NL +
Sbjct: 381 HKMSMMGHKVKVMPYSTFRLNLSV 404
>gi|83320414|gb|ABC02834.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 542
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
Query: 76 LPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
LP R N+ + L++ G S +PGAKY+++ NG+RIDLR+ DL+LQ G+ VERH
Sbjct: 112 LPEIVTRYNIGHLQALLKNGPSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERH 171
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+
Sbjct: 172 INDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSV 231
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
E +AE++ + + P QI++PQ N+PVMGIVQDTL +RK T+RD FL K
Sbjct: 232 EAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLTK 279
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 98/110 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 168 VERHINDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 227
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS+E +AE++ + + P QI++PQ N+PVMGIVQDTL +RK T+RD FL
Sbjct: 228 PQSVEAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFL 277
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L++ G S +PGAKY+++ NG+RIDLR+ DL+LQ G+ VERHI DGD++IFNRQP+L
Sbjct: 127 LLKNGPSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERHINDGDIIIFNRQPSL 186
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH+V+V+P+STFR+NL +
Sbjct: 187 HKMSMMGHKVKVMPYSTFRLNLSV 210
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 133/156 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G YPGAK++VRDNGE+I+L+++ + D LQ GY+VER++ D D++IFNR
Sbjct: 319 RLQEYVRNGRDAYPGAKFVVRDNGEQINLQYNKQRGDFPLQIGYRVERNLIDDDVIIFNR 378
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E+RAE++ I +
Sbjct: 379 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAEIKEICM 438
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+Q I+PQ+N+PVMGIVQDTL A+RK T+RD FLD
Sbjct: 439 VPKQFISPQSNKPVMGIVQDTLCAIRKFTRRDNFLD 474
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 101/112 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VER++ D D++IFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 363 RVERNLIDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E+RAE++ I + P+Q I+PQ+N+PVMGIVQDTL A+RK T+RD FLD
Sbjct: 423 VPQSEESRAEIKEICMVPKQFISPQSNKPVMGIVQDTLCAIRKFTRRDNFLD 474
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E VR G YPGAK++VRDNGE+I+L+++ + D LQ GY+VER++ D D++IFNRQP+
Sbjct: 322 EYVRNGRDAYPGAKFVVRDNGEQINLQYNKQRGDFPLQIGYRVERNLIDDDVIIFNRQPS 381
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 382 LHKMSMMGHRVKVMPYSTFRLNLSV 406
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 491 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
Length = 870
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFRMNL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRMNLSV 287
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 491 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 388 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 101/161 (62%), Positives = 132/161 (81%), Gaps = 4/161 (2%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G++VERH+ DGD ++FNRQ
Sbjct: 134 MQQLVRNGPNEHPGAKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQ 193
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTS----PYNADFDGDEMNLHVPQSMETRAEVEN 202
P+LHKMSMMGH+VR++P+STFR+NLS PYNADFDGDEMN+HVPQS+E +AE+
Sbjct: 194 PSLHKMSMMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDEMNMHVPQSLEAKAEINE 253
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
I + P+QI+ P +++P MGIVQDTL +RKMTKRDVFLDK
Sbjct: 254 ICMVPKQIVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKA 294
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 97/116 (83%), Gaps = 4/116 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP----YNADFDGDE 297
+VERH+ DGD ++FNRQP+LHKMSMMGH+VR++P+STFR+NLS P YNADFDGDE
Sbjct: 177 RVERHLVDGDTIVFNRQPSLHKMSMMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDE 236
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
MN+HVPQS+E +AE+ I + P+QI+ P +++P MGIVQDTL +RKMTKRDVFLD
Sbjct: 237 MNMHVPQSLEAKAEINEICMVPKQIVAPASSKPCMGIVQDTLCGIRKMTKRDVFLD 292
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 75/87 (86%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LVR G +++PGAKY++RD GERIDLR+H + D+ LQ G++VERH+ DGD ++FNRQ
Sbjct: 134 MQQLVRNGPNEHPGAKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQ 193
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH+VR++P+STFR+NL +
Sbjct: 194 PSLHKMSMMGHKVRIMPYSTFRLNLSV 220
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDVQLQYGWKVERHIMDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLE 355
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDEDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLE 355
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRSGDVQLQYGWKVERHIMDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVVPYSTFRLNLSV 287
>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
Length = 872
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSHETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIE 355
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135880|gb|AFO11435.1| RNA polymerase I, partial [Lodderomyces elongisporus]
Length = 872
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G S++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNR
Sbjct: 200 KLTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 RVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G S++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNRQ
Sbjct: 201 LTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 507 VPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 542
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++ Q+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 542
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 134/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G +YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 309 RVTPYNIAQLQ----ELVRNGPREYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 363
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RDGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 364 HLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 423
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 424 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 471
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH+RDGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 335 VVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPY 394
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 395 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 454
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 455 DTLCGIRKFTLRDTFLD 471
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH+RDGD V+FNRQP+
Sbjct: 320 ELVRNGPREYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLRDGDYVLFNRQPS 378
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 379 LHKMSMMSHRVKLMPYSTFRLNLSV 403
>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 132/155 (85%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +L+R G +++PGAKY++RD GERIDLR+H + D+ LQ G+ VERHI+DGD V+FNR
Sbjct: 200 KLSQLIRNGPNEHPGAKYVIRDTGERIDLRYHKRTGDIPLQYGWIVERHIQDGDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
QI++PQ+N+PVMGIVQD+L +RK+TKRD F+
Sbjct: 320 VSLQIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFI 354
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 97/110 (88%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DGD V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 245 VERHIQDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 304
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS ETRAE+ + + QI++PQ+N+PVMGIVQD+L +RK+TKRD F+
Sbjct: 305 PQSEETRAELSQLCMVSLQIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFI 354
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +L+R G +++PGAKY++RD GERIDLR+H + D+ LQ G+ VERHI+DGD V+FNRQ
Sbjct: 201 LSQLIRNGPNEHPGAKYVIRDTGERIDLRYHKRTGDIPLQYGWIVERHIQDGDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 392 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 452 QPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 512 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 547
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 496 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 547
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 393 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 453 PSLHKMSMMSHRVKVMPYSTFRLNLSV 479
>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID 355
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F+D
Sbjct: 304 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFID 355
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 391 RVTPYNIAYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 445
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 446 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 505
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 506 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 553
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 417 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 476
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 477 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 536
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 537 DTLCGIRKFTLRDTFLD 553
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 402 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 461 LHKMSMMSHRVKLMPYSTFRLNLSV 485
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 385 RVTPYNITYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 439
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 440 HLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 499
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + PRQII+PQ N+PVMGIVQDTL VRK T RD FLD
Sbjct: 500 EETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLD 547
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 101/127 (79%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T
Sbjct: 421 LRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVT 480
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMN+HVPQS ETRAE+ + PRQII+PQ N+PVMGIVQDTL VRK T
Sbjct: 481 PPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFT 540
Query: 347 KRDVFLD 353
RD FLD
Sbjct: 541 LRDCFLD 547
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 396 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 454
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 455 LHKMSMMSHRVRLMPYSTFRLNLSV 479
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 388 RVTPYNIAYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 442
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 443 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 502
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 503 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 550
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 414 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 473
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 474 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 533
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 534 DTLCGIRKFTLRDTFLD 550
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 399 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 458 LHKMSMMSHRVKLMPYSTFRLNLSV 482
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 392 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 452 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 512 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 547
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 496 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 547
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 393 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 453 PSLHKMSMMAHRVKVMPYSTFRLNLSV 479
>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCS 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE 355
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIE 355
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
Length = 1579
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 391 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 451 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 511 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 546
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 435 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 495 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 546
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 392 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 452 PSLHKMSMMCHRVKVMPYSTFRLNLSV 478
>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAK+++RD G+RIDL++H K D+ LQ G++VERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKHVIRDTGDRIDLKYHKKAGDIQLQYGWRVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HR +++P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE++N+
Sbjct: 260 QPSLHKMSMMCHRAKIMPYSTFRINLSVTSPYNADFDGDEMNLHVPQSAETRAELQNLVA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D V+FNRQP+LHKMSMM HR +++P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 RVERHLMDDDPVLFNRQPSLHKMSMMCHRAKIMPYSTFRINLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE++N+ P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSAETRAELQNLVAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAK+++RD G+RIDL++H K D+ LQ G++VERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKHVIRDTGDRIDLKYHKKAGDIQLQYGWRVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HR +++P+STFR+NL +
Sbjct: 261 PSLHKMSMMCHRAKIMPYSTFRINLSV 287
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV+ G +Q+PGAKY++RDNG RIDLR++ + DL LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVKNGPNQHPGAKYVIRDNGTRIDLRYNKRAGDLQLQYGWKVERHIVDEDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ET+AE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETKAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT R+ F+D
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRNNFID 355
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIVDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET+AE+ + P QI++PQ+N+P MGIVQDTL VRKMT R+ F+D
Sbjct: 304 VPQSEETKAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRNNFID 355
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +Q+PGAKY++RDNG RIDLR++ + DL LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVKNGPNQHPGAKYVIRDNGTRIDLRYNKRAGDLQLQYGWKVERHIVDEDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV+ G +++PGAKY++RD GERIDLR+H + D+ LQ G+ VERH++D D V+FNR
Sbjct: 200 RLSQLVQNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGWTVERHLQDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 260 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELTQLAM 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQD+L +RK+T RD FL+
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLN 355
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 97/111 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 245 VERHLQDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 304
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ + + P QI++PQ+N+PVMGIVQD+L +RK+T RD FL+
Sbjct: 305 PQSEETRAELTQLAMVPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLN 355
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR+H + D+ LQ G+ VERH++D D V+FNRQ
Sbjct: 201 LSQLVQNGPNEHPGAKYVIRDTGERIDLRYHKRAGDIPLQYGWTVERHLQDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVRVMPYSTFRLNLSV 287
>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
Length = 872
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 355
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 304 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 355
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 385 RVTPYNITYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 439
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 440 HLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 499
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + PRQII+PQ N+PVMGIVQDTL VRK T RD FLD
Sbjct: 500 EETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLD 547
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 101/127 (79%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T
Sbjct: 421 LRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVT 480
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMN+HVPQS ETRAE+ + PRQII+PQ N+PVMGIVQDTL VRK T
Sbjct: 481 PPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFT 540
Query: 347 KRDVFLD 353
RD FLD
Sbjct: 541 LRDCFLD 547
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 396 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 454
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 455 LHKMSMMSHRVRLMPYSTFRLNLSV 479
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 394 RVTPYNIAYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQLGWIVER 448
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 449 HLKDGDYVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 508
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 509 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLD 556
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+
Sbjct: 420 VVRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVRLMPY 479
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQI++PQ N+PVMGIVQ
Sbjct: 480 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQ 539
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 540 DTLCGIRKFTLRDTFLD 556
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 405 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQLGWIVERHLKDGDYVLFNRQPS 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 464 LHKMSMMSHRVRLMPYSTFRLNLSV 488
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 131/157 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+Y++RD GERIDLR+H + D+ LQ G+KVERHI DGD +IFNR
Sbjct: 321 KLHQLVKNGPNEHPGARYVIRDTGERIDLRYHKRAGDISLQYGWKVERHIVDGDYIIFNR 380
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 381 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 440
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 441 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQ 477
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 365 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 424
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 425 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLN 476
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+Y++RD GERIDLR+H + D+ LQ G+KVERHI DGD +IFNRQ
Sbjct: 322 LHQLVKNGPNEHPGARYVIRDTGERIDLRYHKRAGDISLQYGWKVERHIVDGDYIIFNRQ 381
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 382 PSLHKESMMGHRVRVMPYSTFRLNLSV 408
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 232 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 291
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 292 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 351
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 352 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 387
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 276 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 335
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 336 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 387
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 233 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 292
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 293 PSLHKMSMMAHRVKVIPYSTFRLNLSV 319
>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
heterogama]
Length = 639
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 130/154 (84%), Gaps = 1/154 (0%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFNRQPT 148
LV G S +PGAKY++RD GERIDL+ S + LQ G+KVERH+ DGD++IFNRQP+
Sbjct: 156 LVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPS 215
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS+ET+AE+ I + P+
Sbjct: 216 LHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPK 275
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
Q+++PQ+N+PVMGIVQDTL AVRK TKRD FL K
Sbjct: 276 QVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTK 309
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD++IFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 197 KVERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMH 256
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE+ I + P+Q+++PQ+N+PVMGIVQDTL AVRK TKRD FL
Sbjct: 257 VPQSVETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFL 307
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFNRQPT 62
LV G S +PGAKY++RD GERIDL+ S + LQ G+KVERH+ DGD++IFNRQP+
Sbjct: 156 LVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPS 215
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 216 LHKMSMMGHRVRVMPYSTFRLNLSV 240
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 388 RVTPYNIAYLQ----ELVRNGPTVYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 442
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 443 HLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 502
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 503 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 550
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+
Sbjct: 414 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPY 473
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 474 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 533
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 534 DTLCGIRKFTLRDTFLD 550
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 399 ELVRNGPTVYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 458 LHKMSMMSHRVRLMPYSTFRLNLSV 482
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 377 VPWS-IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 435
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 436 SDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 495
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 496 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 555
Query: 241 DK 242
+K
Sbjct: 556 EK 557
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 445 KVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 505 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 556
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH++DGD V+FNR
Sbjct: 401 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNR 460
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 461 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 488
>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
Length = 872
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|149845604|emb|CAL00211.1| RNA polymerase II large subunit [Glomus proliferum]
Length = 478
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 130/154 (84%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQ +
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQSS 196
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS+ET+AE++ I P+
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICTVPK 256
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 257 QIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 290
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQ +LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 178 KVERHINNGDIIIFNRQSSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMH 237
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE++ I P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 238 VPQSVETKAEIKEICTVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 288
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 70/85 (82%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQ +
Sbjct: 137 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQSS 196
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 197 LHKMSMMGHKVRVMPFSTFRLNLSV 221
>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
Length = 871
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 199 RLTEYVINGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNR 258
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 259 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 318
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 319 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 354
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 243 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 302
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 303 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 354
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V G +++PGAKY++RD G+RIDLR+H + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 200 LTEYVINGPNEHPGAKYVIRDTGDRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQ 259
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 260 PSLHKMSMMAHRVKVMPYSTFRLNLSV 286
>gi|397135894|gb|AFO11442.1| RNA polymerase I, partial [Schwanniomyces occidentalis]
Length = 872
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QII+PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSPETRAELSEICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSK 478
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 391 RVTPYNIAYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 445
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 446 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 505
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 506 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 553
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 417 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 476
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 477 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 536
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 537 DTLCGIRKFTLRDTFLD 553
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 402 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 461 LHKMSMMSHRVKLMPYSTFRLNLSV 485
>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
Length = 871
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 320 VPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 355
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++ Q+N+P MGIVQDTL +RK+T RD FL+
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLE 355
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVIPYSTFRLNLSV 287
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 378 VPWS-IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 436
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 437 SDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 496
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 497 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 556
Query: 241 DK 242
+K
Sbjct: 557 EK 558
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 446 KVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 506 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 557
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH++DGD V+FNR
Sbjct: 402 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNR 461
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 462 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 489
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 378 VPWS-IALNLTYPETVTPYNIERLQELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 436
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 437 SDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 496
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 497 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 556
Query: 241 DK 242
+K
Sbjct: 557 EK 558
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 446 KVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 506 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 557
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH++DGD V+FNR
Sbjct: 402 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNR 461
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 462 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 489
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 130/154 (84%), Gaps = 1/154 (0%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFNRQPT 148
LV G S +PGAKY++RD GERIDL+ S + LQ G+KVERH+ DGD++IFNRQP+
Sbjct: 335 LVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPS 394
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS+ET+AE+ I + P+
Sbjct: 395 LHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPK 454
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
Q+++PQ+N+PVMGIVQDTL AVRK TKRD FL K
Sbjct: 455 QVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTK 488
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 102/111 (91%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD++IFNRQP+LHKMSMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 376 KVERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMH 435
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS+ET+AE+ I + P+Q+++PQ+N+PVMGIVQDTL AVRK TKRD FL
Sbjct: 436 VPQSVETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFL 486
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFNRQPT 62
LV G S +PGAKY++RD GERIDL+ S + LQ G+KVERH+ DGD++IFNRQP+
Sbjct: 335 LVENGPSVHPGAKYVIRDTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPS 394
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 395 LHKMSMMGHRVRVMPYSTFRLNLSV 419
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG A+YI+RD+G+R+DLR+ K
Sbjct: 53 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIRDDGQRLDLRYLKKS 111
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD+HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 112 SDMHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 171
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 172 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 231
Query: 241 DK 242
+K
Sbjct: 232 EK 233
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 121 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 180
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 181 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 232
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG A+YI+RD+G+R+DLR+ K SD+HL+ GYKVERH+ DGD V+FNR
Sbjct: 77 ELVEYGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDMHLELGYKVERHLNDGDFVLFNR 136
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 137 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 164
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++R++G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++R++G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 355
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 304 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 355
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMCHRVKVMPYSTFRLNLSV 287
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G S YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 295 RVTPYNIAYLQ----ELVRNGPSTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 349
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 350 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 409
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 410 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 457
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 321 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 380
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 381 STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 440
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 441 DTLCGIRKFTLRDTFLD 457
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G S YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 306 ELVRNGPSTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 365 LHKMSMMSHRVKLMPYSTFRLNLSV 389
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
Length = 871
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +R +T RD FL+
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLE 355
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +R +T RD FL+
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLE 355
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVIPYSTFRLNLSV 287
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 355
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 355
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVIPYSTFRLNLSV 287
>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
Length = 1003
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 323 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 383 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 443 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 479
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 367 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 426
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 427 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 477
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 324 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 383
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 384 PSLHKESMMGHRVRVMPYSTFRLNLSV 410
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 199 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNR 258
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ NI
Sbjct: 259 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNICA 318
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 319 VPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE 354
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 243 KVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 302
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ NI P QI++PQ+N+P MGIVQDTL VRKMT RD F++
Sbjct: 303 VPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE 354
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 200 LTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQ 259
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 260 PSLHKMSMMCHRVKVMPYSTFRLNLSV 286
>gi|83320412|gb|ABC02833.1| RNA polymerase II largest subunit, partial [Allomyces arbuscula]
Length = 739
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G +Q+PGAKY++RDNG+R+DLRF +L LQ G+ VERH+ DGD++IFNR
Sbjct: 307 KLQELVHNGPTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNR 366
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMN+HVPQ +E +AE++ + +
Sbjct: 367 QPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQPLEAKAEIQQLCM 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P QII+PQ+N+PVMGIVQDTL + K T+RD F+DK
Sbjct: 427 VPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDK 463
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 98/111 (88%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 352 VERHLDDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 411
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ +E +AE++ + + P QII+PQ+N+PVMGIVQDTL + K T+RD F+D
Sbjct: 412 PQPLEAKAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMD 462
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G +Q+PGAKY++RDNG+R+DLRF +L LQ G+ VERH+ DGD++IFNRQP+
Sbjct: 310 ELVHNGPTQHPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPS 369
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V+V+P+STFR+NL +
Sbjct: 370 LHKMSMMGHKVKVMPYSTFRLNLSV 394
>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
Length = 1017
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + +L LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGELSLQYGWKVERHITDGDFIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+EV N+
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRSEVANLCW 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQI++P N P+MGIVQD+L KMT++DV+L+
Sbjct: 442 VPRQILSPAKNGPLMGIVQDSLCGFYKMTRKDVYLN 477
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHITDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+EV N+ PRQI++P N P+MGIVQD+L KMT++DV+L+
Sbjct: 426 VPQSEETRSEVANLCWVPRQILSPAKNGPLMGIVQDSLCGFYKMTRKDVYLN 477
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + +L LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGELSLQYGWKVERHITDGDFIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 478
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 478
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
Length = 863
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 198 RLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 257
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 258 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 317
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 318 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE 353
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 242 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 301
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 302 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE 353
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 199 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 259 PSLHKMSMMAHRVKVMPYSTFRLNLSV 285
>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
Length = 872
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD++++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIYIE 355
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD++++
Sbjct: 304 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIYIE 355
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 325 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 384
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 385 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 444
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 445 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 481
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 369 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 428
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 429 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 479
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 326 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 385
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 386 PSLHKESMMGHRVRVMPYSTFRLNLSV 412
>gi|83320462|gb|ABC02858.1| RNA polymerase II largest subunit, partial [Rhizophagus
intraradices]
Length = 585
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/154 (66%), Positives = 130/154 (84%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 155 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 214
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NL TSPYNADFDGDEMN+H+PQS+ET+AE+ I + P+
Sbjct: 215 LHKMSMMGHKVRVMPFSTFRLNLFVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPK 274
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ+N+PVMGIVQDTL +RK TKRD FL K
Sbjct: 275 QIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSK 308
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 100/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI +GD++IFNRQP+LHKMSMMGH+VRV+P+STFR+NL TSPYNADFDGDEMN+H
Sbjct: 196 KVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLFVTSPYNADFDGDEMNMH 255
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS+ET+AE+ I + P+QI++PQ+N+PVMGIVQDTL +RK TKRD FL
Sbjct: 256 IPQSVETKAEIREICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFL 306
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 70/83 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G S +PGAKY++RD GERIDL+ + + LQ G+KVERHI +GD++IFNRQP+
Sbjct: 155 ELVKNGPSVHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPS 214
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGH+VRV+P+STFR+NL
Sbjct: 215 LHKMSMMGHKVRVMPFSTFRLNL 237
>gi|397135854|gb|AFO11422.1| RNA polymerase I, partial [Candida abiesophila]
Length = 870
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+VR G +++PGAKY++RDNG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEMVRNGPNEHPGAKYVIRDNGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+ST RMNLS TSPYNAD DGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMCHRVKVMPYSTXRMNLSVTSPYNADXDGDEMNLHVPQSXETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTXRDNFIE 355
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+ST RMNLS TSPYNAD DGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTXRMNLSVTSPYNADXDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSXETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTXRDNFIE 355
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E+VR G +++PGAKY++RDNG+RIDLRF+ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEMVRNGPNEHPGAKYVIRDNGDRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+ST RMNL +
Sbjct: 261 PSLHKMSMMCHRVKVMPYSTXRMNLSV 287
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
+K
Sbjct: 555 EK 556
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 555
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 387 RVTPYNITYLQ----ELVRNGPTVYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 441
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 442 HLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 501
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL VRK T RD FL+
Sbjct: 502 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDTFLE 549
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+
Sbjct: 413 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPY 472
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 473 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 532
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL VRK T RD FL+
Sbjct: 533 DTLCGVRKFTLRDTFLE 549
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 398 ELVRNGPTVYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 456
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 457 LHKMSMMSHRVRLMPYSTFRLNLSV 481
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 228 bits (582), Expect = 3e-57, Method: Composition-based stats.
Identities = 108/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ L + ELVR G ++YPGA+Y+VRD GERIDLR++ + +D LQ G+ VER
Sbjct: 390 RVTPYNI----LYLQELVRNGPNEYPGARYVVRDTGERIDLRYNRR-ADTFLQYGWIVER 444
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 445 HLKDGDFVLFNRQPSLHKMSMMCHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 504
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I RQI++PQ N PVMGIVQD L VRK+T RD FLD
Sbjct: 505 EETRAEMSQIASVTRQIVSPQANSPVMGIVQDALCGVRKLTLRDTFLD 552
Score = 180 bits (457), Expect = 8e-43, Method: Composition-based stats.
Identities = 87/137 (63%), Positives = 104/137 (75%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 416 VVRDTGERIDLRYNRRADTFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMPY 475
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMNLHVPQS ETRAE+ I RQI++PQ N PVMGIVQ
Sbjct: 476 STFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIASVTRQIVSPQANSPVMGIVQ 535
Query: 337 DTLTAVRKMTKRDVFLD 353
D L VRK+T RD FLD
Sbjct: 536 DALCGVRKLTLRDTFLD 552
Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats.
Identities = 54/83 (65%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++YPGA+Y+VRD GERIDLR++ + +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 401 ELVRNGPNEYPGARYVVRDTGERIDLRYNRR-ADTFLQYGWIVERHLKDGDFVLFNRQPS 459
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+++P+STFR+NL
Sbjct: 460 LHKMSMMCHRVKLMPYSTFRLNL 482
>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
Length = 863
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 198 RLTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 257
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 258 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 317
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 318 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 353
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 242 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 301
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 302 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 353
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD+G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 199 LTEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 259 PSLHKMSMMAHRVKVMPYSTFRLNLSV 285
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 478
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVVPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVVPYSTFRLNLSV 409
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 442 VPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLTK 478
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 426 VPQSEETRAEVSQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFL 476
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 392 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 452 QPSLHKMSMMSHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 512 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 547
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHLMDNDPVLFNRQPSLHKMSMMSHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 496 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 547
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 393 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+V+V+P+STFR+NL +
Sbjct: 453 PSLHKMSMMSHKVKVMPYSTFRLNLSV 479
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 53 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 111
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 112 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 171
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 172 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFI 231
Query: 241 DK 242
+K
Sbjct: 232 EK 233
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 121 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 180
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 181 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIE 232
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 77 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNR 136
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 137 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 164
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 243 RVTPYNIAYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 297
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RDGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 298 HLRDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 357
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVM IVQDTL +RK T RD FLD
Sbjct: 358 EETRAELSQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLD 405
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH+RDGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 269 VVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDFVLFNRQPSLHKMSMMSHRVKLMPY 328
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVM IVQ
Sbjct: 329 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMAIVQ 388
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 389 DTLCGIRKFTLRDTFLD 405
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH+RDGD V+FNRQP+
Sbjct: 254 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLRDGDFVLFNRQPS 312
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 313 LHKMSMMSHRVKLMPYSTFRLNLSV 337
>gi|83320438|gb|ABC02846.1| RNA polymerase II largest subunit, partial [Conidiobolus coronatus]
Length = 749
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 137/170 (80%), Gaps = 4/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ R+ E VR G + +PGAKY++RD GERIDLR + + +++ L GY VER
Sbjct: 309 RVTPYNIQRLR----EAVRNGPNVHPGAKYVIRDTGERIDLRHYRRNAEVPLMVGYIVER 364
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
HI D D+VIFNRQP+LHKMSMMGH ++V+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 365 HIIDNDVVIFNRQPSLHKMSMMGHLIKVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 424
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
E+RAEV NI + PRQI++PQ+N+PVMGIVQDTL +RK T+RD FLD+
Sbjct: 425 EESRAEVLNICMVPRQIVSPQSNKPVMGIVQDTLCGIRKFTQRDAFLDRA 474
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 99/111 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI D D+VIFNRQP+LHKMSMMGH ++V+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 362 VERHIIDNDVVIFNRQPSLHKMSMMGHLIKVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 421
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E+RAEV NI + PRQI++PQ+N+PVMGIVQDTL +RK T+RD FLD
Sbjct: 422 PQSEESRAEVLNICMVPRQIVSPQSNKPVMGIVQDTLCGIRKFTQRDAFLD 472
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E VR G + +PGAKY++RD GERIDLR + + +++ L GY VERHI D D+VIFNRQP+
Sbjct: 320 EAVRNGPNVHPGAKYVIRDTGERIDLRHYRRNAEVPLMVGYIVERHIIDNDVVIFNRQPS 379
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH ++V+P+STFR+NL +
Sbjct: 380 LHKMSMMGHLIKVMPYSTFRLNLSV 404
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 228 bits (582), Expect = 3e-57, Method: Composition-based stats.
Identities = 107/154 (69%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
E V G +++PGA+Y++R NG+RIDL +L L G KVERHIRDGD+V+FNRQP+
Sbjct: 396 EAVDNGPNEHPGARYVIRQNGDRIDLS-RAGAIELQLNVGDKVERHIRDGDIVLFNRQPS 454
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ET+AE+ I + PR
Sbjct: 455 LHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPR 514
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ NRPVMGIVQDTL VRK TKRD FL K
Sbjct: 515 QIVSPQANRPVMGIVQDTLCGVRKFTKRDSFLTK 548
Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/112 (80%), Positives = 101/112 (90%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
DKVERHIRDGD+V+FNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNL
Sbjct: 435 DKVERHIRDGDIVLFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
HVPQS ET+AE+ I + PRQI++PQ NRPVMGIVQDTL VRK TKRD FL
Sbjct: 495 HVPQSYETKAELSEICMVPRQIVSPQANRPVMGIVQDTLCGVRKFTKRDSFL 546
Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/83 (63%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E V G +++PGA+Y++R NG+RIDL +L L G KVERHIRDGD+V+FNRQP+
Sbjct: 396 EAVDNGPNEHPGARYVIRQNGDRIDLS-RAGAIELQLNVGDKVERHIRDGDIVLFNRQPS 454
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVRV+P+STFR+NL
Sbjct: 455 LHKMSMMGHRVRVMPYSTFRLNL 477
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 406
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T PYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLHVPQSEETRAEVSGLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSK 478
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS T PYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEVSGLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++ Q+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
Length = 981
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 303 KLHQLVKTGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 363 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 423 VPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTK 459
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 407 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFL 457
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 304 LHQLVKTGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 PSLHKESMMGHRVRVMPYSTFRLNLSV 390
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
K
Sbjct: 555 SK 556
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 133/167 (79%), Gaps = 4/167 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ R+ LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH
Sbjct: 380 VTPYNIDRLTF----LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERH 435
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 436 IMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 495
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 496 ETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 542
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 542
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQP+L
Sbjct: 391 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSL 450
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+V+P+STFR+NL +
Sbjct: 451 HKMSMMAHRVKVMPYSTFRLNLSV 474
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 335 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEIMLQYGWKVERHIVDGDFIIFNR 394
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L+K SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 395 QPSLYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 454
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 455 VPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTK 491
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+L+K SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 379 KVERHIVDGDFIIFNRQPSLYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 438
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 439 VPQSEETRAEVSQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFL 489
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 336 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEIMLQYGWKVERHIVDGDFIIFNRQ 395
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+L+K SMMGHRVRV+P+STFR+NL +
Sbjct: 396 PSLYKESMMGHRVRVMPYSTFRLNLSV 422
>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
Length = 872
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSLICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 355
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSPETRAELSLICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIE 355
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
Length = 872
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 RVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QII+PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 304 VPQSPETRSELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 355
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G++VERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 395 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 455 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RKMT RD +++
Sbjct: 515 VPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE 550
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QII+PQ+N+PVMGIVQDTL +RKMT RD +++
Sbjct: 499 VPQSPETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE 550
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 396 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 456 PSLHKMSMMCHRVKVMPYSTFRLNLSV 482
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++R+NG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRENGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADF GDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFXGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 355
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADF GDEMNLH
Sbjct: 244 KVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFXGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 355
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++R+NG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRENGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 741
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 132/157 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV G +++PGAKYIVRD+G+RIDLR+ +P+DLHL+ GYKVERH++DGD+V+FNR
Sbjct: 369 RLQALVANGPNEHPGAKYIVRDDGQRIDLRYVRRPADLHLEIGYKVERHLQDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRVR+LP+STFR+NLS TSPYNADFDGDEMNLHVPQ +E +AE+ + +
Sbjct: 429 QPSLHKMSIMGHRVRILPYSTFRLNLSATSPYNADFDGDEMNLHVPQFLEGKAEILELMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ I++PQ N+PVMG+VQDTL T RDVF+ +
Sbjct: 489 VPKNIVSPQANKPVMGLVQDTLLGCSLFTMRDVFITR 525
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD+V+FNRQP+LHKMS+MGHRVR+LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 413 KVERHLQDGDVVLFNRQPSLHKMSIMGHRVRILPYSTFRLNLSATSPYNADFDGDEMNLH 472
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ +E +AE+ + + P+ I++PQ N+PVMG+VQDTL T RDVF+
Sbjct: 473 VPQFLEGKAEILELMMVPKNIVSPQANKPVMGLVQDTLLGCSLFTMRDVFI 523
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 76/82 (92%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGAKYIVRD+G+RIDLR+ +P+DLHL+ GYKVERH++DGD+V+FNRQP+L
Sbjct: 373 LVANGPNEHPGAKYIVRDDGQRIDLRYVRRPADLHLEIGYKVERHLQDGDVVLFNRQPSL 432
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMS+MGHRVR+LP+STFR+NL
Sbjct: 433 HKMSIMGHRVRILPYSTFRLNL 454
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGA+YI+R+NG+RIDLR+ + S++ LQ GY+VERH+ D D VIFNR
Sbjct: 293 RLQQLVRNGPTEHPGARYIIRENGDRIDLRYSNR-SEVSLQVGYRVERHLMDDDFVIFNR 351
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKM MMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 352 QPSLHKMGMMGHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEIMELCM 411
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PRQI++PQ N PVMGIVQDTL +RK+T+RD FL
Sbjct: 412 VPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFL 446
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D VIFNRQP+LHKM MMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 336 RVERHLMDDDFVIFNRQPSLHKMGMMGHRVKVMPFSTFRLNLSVTSPYNADFDGDEMNLH 395
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + PRQI++PQ N PVMGIVQDTL +RK+T+RD FL
Sbjct: 396 VPQSHETRAEIMELCMVPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFL 446
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA+YI+R+NG+RIDLR+ + S++ LQ GY+VERH+ D D VIFNRQP+
Sbjct: 296 QLVRNGPTEHPGARYIIRENGDRIDLRYSNR-SEVSLQVGYRVERHLMDDDFVIFNRQPS 354
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKM MMGHRV+V+P+STFR+NL +
Sbjct: 355 LHKMGMMGHRVKVMPFSTFRLNLSV 379
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
K
Sbjct: 555 TK 556
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
K
Sbjct: 555 TK 556
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
K
Sbjct: 555 TK 556
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +I NR
Sbjct: 324 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIILNR 383
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 384 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 443
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 444 VPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTK 480
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +I NRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 368 KVERHIVDGDFIILNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 427
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 428 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFL 478
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +I NRQ
Sbjct: 325 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIILNRQ 384
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 385 PSLHKESMMGHRVRVMPYSTFRLNLSV 411
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 409
>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
Length = 872
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRK+T RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIE 355
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRK+T RD F++
Sbjct: 304 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIE 355
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMSHRVKVMPYSTFRLNLSV 287
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 387 VPWS-IALNLTYPETVTPYNLERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 445
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 446 SDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 505
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F+
Sbjct: 506 FDGDEMNMHVPQSFETRAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 565
Query: 241 DK 242
+K
Sbjct: 566 EK 567
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Query: 227 LTAVRKMTKRDVFLD-KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L ++K + R + L KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS
Sbjct: 439 LRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSV 498
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+
Sbjct: 499 TSPYNADFDGDEMNMHVPQSFETRAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKV 558
Query: 346 TKRDVFLD 353
TKRD F++
Sbjct: 559 TKRDTFIE 566
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 411 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNR 470
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 471 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 498
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 395 VPWS-IALNLTYPETVTPYNLERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 453
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 454 SDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 513
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F+
Sbjct: 514 FDGDEMNMHVPQSFETRAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 573
Query: 241 DK 242
+K
Sbjct: 574 EK 575
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 463 KVERHLCDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 522
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F++
Sbjct: 523 VPQSFETRAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIE 574
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 419 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNR 478
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 479 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 506
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 409
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 409
>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
Length = 872
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE 355
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE 355
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PG +Y+ RD GERIDL++H + D+ LQ G+ VERH+ D D V+FNR
Sbjct: 198 KLTELVRNGPNEHPGLRYVFRDTGERIDLKYHKRAGDIALQYGWIVERHLMDNDPVLFNR 257
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+S+FR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 258 QPSLHKMSMMAHRVKVMPYSSFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICA 317
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL VRKMT RDVF++
Sbjct: 318 VPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIE 353
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+S+FR+NLS TSPYNADFDGDEMNLHV
Sbjct: 243 VERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRLNLSVTSPYNADFDGDEMNLHV 302
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I P QII+PQ+N+PVMGIVQDTL VRKMT RDVF++
Sbjct: 303 PQSEETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIE 353
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PG +Y+ RD GERIDL++H + D+ LQ G+ VERH+ D D V+FNRQ
Sbjct: 199 LTELVRNGPNEHPGLRYVFRDTGERIDLKYHKRAGDIALQYGWIVERHLMDNDPVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+S+FR+NL +
Sbjct: 259 PSLHKMSMMAHRVKVMPYSSFRLNLSV 285
>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
Length = 1004
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 323 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 383 QPSLHKESMMGHRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCM 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGI+QDTL + K+ +RDVFL K
Sbjct: 443 VPLNIVSPQRNSPLMGIIQDTLCGIYKICRRDVFLTK 479
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 367 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLH 426
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RDVFL
Sbjct: 427 VPQSQESRAELANLCMVPLNIVSPQRNSPLMGIIQDTLCGIYKICRRDVFL 477
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 324 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 383
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 384 PSLHKESMMGHRVRVMPYSTFRLNLSV 410
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 294 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYSKKS 352
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 353 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 412
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 413 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 472
Query: 241 DK 242
+K
Sbjct: 473 EK 474
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 362 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 422 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 473
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 318 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYSKKSSDHHLELGYKVERHLNDGDFVLFNR 377
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 378 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 405
>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSK 478
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 426 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFL 476
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 133/167 (79%), Gaps = 4/167 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ R+ LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH
Sbjct: 193 VTPYNIDRLTF----LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERH 248
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
I D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 249 IMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 309 ETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 355
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 355
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQP+L
Sbjct: 204 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSL 263
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+V+P+STFR+NL +
Sbjct: 264 HKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 104/152 (68%), Positives = 127/152 (83%), Gaps = 1/152 (0%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LVR G +YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 400 LVRNGPREYPGARYVVRDTGERIDLRYNKK-ADAFLQYGWIVERHLKDGDYVLFNRQPSL 458
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQ
Sbjct: 459 HKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQ 518
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
II+PQ N+PVMGIVQDTL +RK+T RD FLD
Sbjct: 519 IISPQANKPVMGIVQDTLCGIRKLTLRDTFLD 550
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 107/137 (78%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R K D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 414 VVRDTGERIDLRYNKKADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKIMPY 473
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 474 STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 533
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK+T RD FLD
Sbjct: 534 DTLCGIRKLTLRDTFLD 550
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 400 LVRNGPREYPGARYVVRDTGERIDLRYNKK-ADAFLQYGWIVERHLKDGDYVLFNRQPSL 458
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+++P+STFR+NL +
Sbjct: 459 HKMSMMSHRVKIMPYSTFRLNLSV 482
>gi|146423607|ref|XP_001487730.1| hypothetical protein PGUG_01107 [Meyerozyma guilliermondii ATCC
6260]
gi|146388851|gb|EDK37009.1| hypothetical protein PGUG_01107 [Meyerozyma guilliermondii ATCC
6260]
Length = 288
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 113 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 172
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 173 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 232
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 233 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 268
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 157 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 216
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 217 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 268
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 114 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 173
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 174 PSLHKMSMMCHRVKVMPYSTFRLNLSV 200
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + +LVR G + YPGA+Y+V+D GERIDLR++ K +D LQ G+ VER
Sbjct: 391 RVTPYNIHWLQ----DLVRNGPTTYPGARYVVKDTGERIDLRYN-KRADAFLQFGWIVER 445
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 446 HLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 505
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 506 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 553
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+
Sbjct: 417 VVKDTGERIDLRYNKRADAFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPY 476
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 477 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 536
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 537 DTLCGIRKFTLRDTFLD 553
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G + YPGA+Y+V+D GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 402 DLVRNGPTTYPGARYVVKDTGERIDLRYN-KRADAFLQFGWIVERHLKDGDFVLFNRQPS 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 461 LHKMSMMSHRVRLMPYSTFRLNLSV 485
>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
Length = 872
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMSHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +R +T +D FL+
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRILTLKDTFLE 542
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMSHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +R +T +D FL+
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLKDTFLE 542
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMSHRVKVVPYSTFRLNLSV 474
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LVR G S +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 328 KLHQLVRNGPSGHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 387
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 388 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAEISQLCM 447
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 448 VPLNIVSPQRNGPLMGIVQDTLVGIYKICRRDVFLTK 484
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 372 KVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 431
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 432 VPQSEETRAEISQLCMVPLNIVSPQRNGPLMGIVQDTLVGIYKICRRDVFL 482
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G S +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 329 LHQLVRNGPSGHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 388
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 389 PSLHKESMMGHRVRVMPYSTFRLNLSV 415
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 554
Query: 241 DK 242
+K
Sbjct: 555 EK 556
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 555
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLRF K
Sbjct: 379 VPWS-IALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKKS 437
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 438 SDRHLELGYKVERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 497
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F+
Sbjct: 498 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 557
Query: 241 DK 242
+K
Sbjct: 558 EK 559
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 447 KVERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 506
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F++
Sbjct: 507 VPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIE 558
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLRF K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 403 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKKSSDRHLELGYKVERHMNDGDFVLFNR 462
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 463 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 490
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QII+PQ+N+PVMGIVQDTL +RKMT RD +++
Sbjct: 320 VPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE 355
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QII+PQ+N+PVMGIVQDTL +RKMT RD +++
Sbjct: 304 VPQSPETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIE 355
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMCHRVKVMPYSTFRLNLSV 287
>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 996
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 302 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 362 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL+K
Sbjct: 422 VPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLNK 458
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 346 KVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 406 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLN 457
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 303 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 363 PSLHKESMMGHRVRVMPYSTFRLNLSV 389
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 128/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTHLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVRVMPFSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDNFIE 542
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVRVMPFSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++ Q+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDNFIE 542
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQP+L
Sbjct: 391 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSL 450
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRVRV+P+STFR+NL +
Sbjct: 451 HKMSMMAHRVRVMPFSTFRLNLSV 474
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG A+YI+RD+G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLMDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLMDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG A+YI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLMDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LHKMS+MGHR+R++P+STFR+NL
Sbjct: 382 QPSLHKMSIMGHRIRIMPYSTFRLNL 407
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 135/167 (80%), Gaps = 4/167 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ R+ + LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH
Sbjct: 380 VTPYNIDRLTM----LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERH 435
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 436 VIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 495
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + P+QI++PQ+N+P MG+VQDTL +RK+T RD F++
Sbjct: 496 ETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIE 542
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHVIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++PQ+N+P MG+VQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIE 542
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH+ D D V+FNRQP+L
Sbjct: 391 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSL 450
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM H+V+V+P+STFR+NL +
Sbjct: 451 HKMSMMAHKVKVMPYSTFRLNLSV 474
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 424 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 482
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 483 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 542
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 543 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 602
Query: 241 DK 242
+K
Sbjct: 603 EK 604
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 492 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 551
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 552 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 603
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 448 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 507
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 508 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 535
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 106/153 (69%), Positives = 126/153 (82%), Gaps = 1/153 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELVR G + YPGA+Y+VRD ERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 403 ELVRNGPTTYPGARYVVRDTNERIDLRYN-KRADTFLQFGWIVERHLKDGDFVLFNRQPS 461
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PR
Sbjct: 462 LHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPR 521
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
QII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 522 QIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 554
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 101/127 (79%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T
Sbjct: 428 LRYNKRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVT 487
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T
Sbjct: 488 PPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFT 547
Query: 347 KRDVFLD 353
RD FLD
Sbjct: 548 LRDTFLD 554
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD ERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 403 ELVRNGPTTYPGARYVVRDTNERIDLRYN-KRADTFLQFGWIVERHLKDGDFVLFNRQPS 461
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 462 LHKMSMMSHRVRLMPYSTFRLNLSV 486
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 128/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTQLVRNGPNEHPGAKYVIRDNGTRIDLRYSKRTGDIQLQYGWKVERHIVDNDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL VRK+T + F++
Sbjct: 320 VPLQIVSPQSNKPCMGIVQDTLAGVRKLTLKSTFIE 355
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIVDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL VRK+T + F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLAGVRKLTLKSTFIE 355
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGTRIDLRYSKRTGDIQLQYGWKVERHIVDNDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LHKMS+MGHR++++P+STFR+NL
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNL 404
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+Y++RD GERIDLRFH + DL LQ G+KVERHI DGD +IFNR
Sbjct: 304 KLHQLVKNGPNEHPGARYVIRDTGERIDLRFHRRAGDLVLQYGWKVERHIVDGDXIIFNR 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 364 QPYXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 424 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQ 460
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 93/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 348 KVERHIVDGDXIIFNRQPYXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 408 VPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 459
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+Y++RD GERIDLRFH + DL LQ G+KVERHI DGD +IFNRQ
Sbjct: 305 LHQLVKNGPNEHPGARYVIRDTGERIDLRFHRRAGDLVLQYGWKVERHIVDGDXIIFNRQ 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P HK SMMGHRVRV+P+STFR+NL +
Sbjct: 365 PYXHKESMMGHRVRVMPYSTFRLNLSV 391
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 406
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 395 KLHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 455 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 515 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 551
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 499 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 549
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 396 LHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 456 PSLHKESMMGHRVRVMPYSTFRLNLSV 482
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 406
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/168 (63%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 389 RVTPYNIAYLQ----ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 443
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 444 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 503
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD F++
Sbjct: 504 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFME 551
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 415 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 474
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 475 STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 534
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD F++
Sbjct: 535 DTLCGIRKFTLRDTFME 551
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 400 ELVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 458
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 459 LHKMSMMSHRVKLMPYSTFRLNLSV 483
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 138/170 (81%), Gaps = 6/170 (3%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVE 132
V P++ R+N ELV G YPGAKY++R++G RIDLRF ++ + L+ GYKVE
Sbjct: 311 VTPFNFERLN----ELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVE 366
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH++DGD+++FNRQP+LHKMSMMGHR++V+P+STFRMNLS T+PYNADFDGDEMNLHVPQ
Sbjct: 367 RHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQ 426
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S++T+AE+ + + PR IITPQ+NRPV+ +VQDTL A K+T+RDVF+ K
Sbjct: 427 SLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAK 476
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD+++FNRQP+LHKMSMMGHR++V+P+STFRMNLS T+PYNADFDGDEMNLH
Sbjct: 364 KVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLH 423
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS++T+AE+ + + PR IITPQ+NRPV+ +VQDTL A K+T+RDVF+
Sbjct: 424 VPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI 474
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVERHIRDGDLVIFNRQ 60
ELV G YPGAKY++R++G RIDLRF ++ + L+ GYKVERH++DGD+++FNRQ
Sbjct: 321 ELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVERHLQDGDVILFNRQ 380
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFRMNL +
Sbjct: 381 PSLHKMSMMGHRIKVMPYSTFRMNLSV 407
>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
Length = 870
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 134/167 (80%), Gaps = 4/167 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ ++ L LVR G +++PGA+Y+ RD GERIDL++H + D+ LQ G+ VERH
Sbjct: 191 VTPYNIHKLTL----LVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYGWIVERH 246
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 247 LMDNDPVLFNRQPSLHKMSMMTHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 306
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + P QI++PQ+N+PVMGIVQDTL +RKMT RDVF++
Sbjct: 307 ETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIE 353
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 243 VERHLMDNDPVLFNRQPSLHKMSMMTHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 302
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ + P QI++PQ+N+PVMGIVQDTL +RKMT RDVF++
Sbjct: 303 PQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIE 353
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 69/84 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGA+Y+ RD GERIDL++H + D+ LQ G+ VERH+ D D V+FNRQP+L
Sbjct: 202 LVRNGPNEHPGARYVFRDTGERIDLKYHKRAGDIALQYGWIVERHLMDNDPVLFNRQPSL 261
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+V+P+STFR+NL +
Sbjct: 262 HKMSMMTHRVKVMPYSTFRLNLSV 285
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LHKMS+MGHR++++P+STFR+NL
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNL 404
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 294 VPWS-IALNLTYPETVTPYNIDRLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 352
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 353 SDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 412
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 413 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 472
Query: 241 DK 242
+K
Sbjct: 473 EK 474
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 362 KVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 422 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 473
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 318 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNR 377
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 378 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 405
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 134/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G ++YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 300 RVTPFNIHKLQ----ELVRNGPNEYPGARYVVRDTGERIDLRYN-KRTDAFLQHGWIVER 354
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RDGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 355 HLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 414
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I P QII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 415 EETRAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 462
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 117/174 (67%), Gaps = 10/174 (5%)
Query: 186 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRP-VMGIVQDTLTAV--RKMTKRDVFLDK 242
MNL P+ R NIH + N P +V+DT + R + D FL
Sbjct: 293 MNLTYPE----RVTPFNIHKLQELVRNGPNEYPGARYVVRDTGERIDLRYNKRTDAFLQH 348
Query: 243 ---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 299
VERH+RDGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN
Sbjct: 349 GWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMN 408
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+H+PQS ETRAE+ I P QII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 409 MHIPQSEETRAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 462
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH+RDGD V+FNRQP+
Sbjct: 311 ELVRNGPNEYPGARYVVRDTGERIDLRYN-KRTDAFLQHGWIVERHLRDGDYVLFNRQPS 369
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 370 LHKMSMMSHRVKLMPYSTFRLNLSV 394
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 296 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 354
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 355 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 414
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 415 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 474
Query: 241 DK 242
+K
Sbjct: 475 EK 476
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 364 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 423
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 424 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 475
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 320 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 379
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 380 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 407
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 311 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+ HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 371 QPSXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 430
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 431 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQ 467
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+ HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 355 KVERHIVDGDFIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 414
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 415 VPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLN 466
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 312 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQ 371
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+ HK SMMGHRVRV+P+STFR+NL +
Sbjct: 372 PSXHKESMMGHRVRVMPYSTFRLNLSV 398
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 392 RVTPYNIAYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 446
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 447 HLKDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 506
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVM IVQDTL +RK T RD FLD
Sbjct: 507 EETRAELAQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLD 554
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 418 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPY 477
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVM IVQ
Sbjct: 478 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELAQIAWVPRQIISPQANKPVMAIVQ 537
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 538 DTLCGIRKFTLRDTFLD 554
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 403 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDYVLFNRQPS 461
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 462 LHKMSMMSHRVKLMPYSTFRLNLSV 486
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 138/170 (81%), Gaps = 6/170 (3%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVE 132
V P++ R+N ELV G YPGAKY++R++G RIDLRF ++ + L+ GYKVE
Sbjct: 355 VTPFNFERLN----ELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVE 410
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH++DGD+++FNRQP+LHKMSMMGHR++V+P+STFRMNLS T+PYNADFDGDEMNLHVPQ
Sbjct: 411 RHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQ 470
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S++T+AE+ + + PR IITPQ+NRPV+ +VQDTL A K+T+RDVF+ K
Sbjct: 471 SLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAK 520
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD+++FNRQP+LHKMSMMGHR++V+P+STFRMNLS T+PYNADFDGDEMNLH
Sbjct: 408 KVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLH 467
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS++T+AE+ + + PR IITPQ+NRPV+ +VQDTL A K+T+RDVF+
Sbjct: 468 VPQSLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFI 518
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVERHIRDGDLVIFNRQ 60
ELV G YPGAKY++R++G RIDLRF ++ + L+ GYKVERH++DGD+++FNRQ
Sbjct: 365 ELVTNGPLTYPGAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVERHLQDGDVILFNRQ 424
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFRMNL +
Sbjct: 425 PSLHKMSMMGHRIKVMPYSTFRMNLSV 451
>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 1016
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQXVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLAGIYKMCRRDVFLTK 478
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKMCRRDVFL 476
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQXVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ +
Sbjct: 298 VPWS-IALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAE+ + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEILELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEILELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ + SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/152 (67%), Positives = 127/152 (83%), Gaps = 1/152 (0%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 395 LVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQFGWIVERHLKDGDYVLFNRQPSL 453
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQ
Sbjct: 454 HKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQ 513
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
I+TPQ+N+PVMGIVQDTL +RK T RD F+D
Sbjct: 514 IVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMD 545
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 107/137 (78%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 409 VVRDTGERIDLRYNKRADAFLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPY 468
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQI+TPQ+N+PVMGIVQ
Sbjct: 469 STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIVTPQSNKPVMGIVQ 528
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD F+D
Sbjct: 529 DTLCGIRKFTLRDCFMD 545
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 395 LVRNGPTTYPGARYVVRDTGERIDLRYN-KRADAFLQFGWIVERHLKDGDYVLFNRQPSL 453
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+++P+STFR+NL +
Sbjct: 454 HKMSMMSHRVKLMPYSTFRLNLSV 477
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++R+NG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 386 RLTQLVRNGPNEHPGAKYVIRENGDRIDLRYSKRAGDVQLQYGWKVERHIMDDDPVLFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 446 QPSLHKMSMMAHKVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +R +T RD FL+
Sbjct: 506 VPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLE 541
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 430 KVERHIMDDDPVLFNRQPSLHKMSMMAHKVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 489
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +R +T RD FL+
Sbjct: 490 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLE 541
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++R+NG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 387 LTQLVRNGPNEHPGAKYVIRENGDRIDLRYSKRAGDVQLQYGWKVERHIMDDDPVLFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+V+V+P+STFR+NL +
Sbjct: 447 PSLHKMSMMAHKVKVIPYSTFRLNLSV 473
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 297 VPWS-IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 355
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 356 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 415
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ET AEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 416 FDGDEMNMHVPQSFETXAEVXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 475
Query: 241 DK 242
+K
Sbjct: 476 EK 477
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 365 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 424
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET AEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 425 VPQSFETXAEVXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 476
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+
Sbjct: 335 GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 394
Query: 74 RVLPWSTFRMNLRM 87
+++P+STFR+NL +
Sbjct: 395 KIMPYSTFRLNLSV 408
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 395 KLHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 455 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 515 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 551
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 499 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 549
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 396 LHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 455
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 456 PSLHKESMMGHRVRVMPYSTFRLNLSV 482
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG A+YI+RD+G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG A+YI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIE 477
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 297 RVTPYNIAYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 351
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 352 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 411
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+P N+PVMGIVQDTL +RK T RD FLD
Sbjct: 412 EETRAELSQIAWVPRQIISPHANKPVMGIVQDTLCGIRKFTLRDTFLD 459
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++P+
Sbjct: 323 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPY 382
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+H+PQS ETRAE+ I PRQII+P N+PVMGIVQ
Sbjct: 383 STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPHANKPVMGIVQ 442
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 443 DTLCGIRKFTLRDTFLD 459
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 308 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 366
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++P+STFR+NL +
Sbjct: 367 LHKMSMMSHRVKLMPYSTFRLNLSV 391
>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
Length = 871
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 135/167 (80%), Gaps = 4/167 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ R+ + LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH
Sbjct: 193 VTPYNIDRLTM----LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERH 248
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 249 VIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ + P+QI++PQ+N+P MG+VQDTL +RK+T RD F++
Sbjct: 309 ETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIE 355
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHVIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P+QI++PQ+N+P MG+VQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIE 355
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 71/84 (84%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERH+ D D V+FNRQP+L
Sbjct: 204 LVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSL 263
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM H+V+V+P+STFR+NL +
Sbjct: 264 HKMSMMAHKVKVMPYSTFRLNLSV 287
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/169 (63%), Positives = 132/169 (78%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P F MN M +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VER
Sbjct: 416 RVTP---FNMNY-MHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVER 471
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 472 HLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQS 531
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
M RA+ + + + + IITPQ+NRPVMGIVQD+L +K TKRD+FL K
Sbjct: 532 MTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTK 580
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 78/110 (70%), Positives = 93/110 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 469 VERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHV 528
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQSM RA+ + + + + IITPQ+NRPVMGIVQD+L +K TKRD+FL
Sbjct: 529 PQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFL 578
Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VERH+RD DLV+FNRQ
Sbjct: 425 MHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQ 484
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M HRV+V WSTFR+NL
Sbjct: 485 PSLHKMSIMSHRVKVFDWSTFRLNL 509
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/169 (63%), Positives = 132/169 (78%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P F MN M +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VER
Sbjct: 416 RVTP---FNMNY-MHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVER 471
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 472 HLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQS 531
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
M RA+ + + + + IITPQ+NRPVMGIVQD+L +K TKRD+FL K
Sbjct: 532 MTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHK 580
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 78/110 (70%), Positives = 93/110 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 469 VERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHV 528
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQSM RA+ + + + + IITPQ+NRPVMGIVQD+L +K TKRD+FL
Sbjct: 529 PQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFL 578
Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VERH+RD DLV+FNRQ
Sbjct: 425 MHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQ 484
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M HRV+V WSTFR+NL
Sbjct: 485 PSLHKMSIMSHRVKVFDWSTFRLNL 509
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 137/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 394 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 452
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 453 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 512
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQD+L RK+TKRD F+
Sbjct: 513 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFI 572
Query: 241 DK 242
K
Sbjct: 573 SK 574
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 462 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 521
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQD+L RK+TKRD F+
Sbjct: 522 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFI 572
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 418 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 477
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 478 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 505
>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
Length = 792
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 130/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G + +PGA+Y+ RDNGERIDLRF+ + D+ LQ G++VERH+ DGDLVIFNR
Sbjct: 318 KLQELVANGPNAHPGARYVYRDNGERIDLRFNRRGGDIPLQYGWRVERHLVDGDLVIFNR 377
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRVRV+P TFR+NLS T+PYNADFDGDEMN+HVPQS+E++AE++ I +
Sbjct: 378 QPSLHKMSMMGHRVRVMPHHTFRLNLSVTTPYNADFDGDEMNMHVPQSLESKAEIQEICM 437
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N PVMGIVQDTL V T+RD FL +
Sbjct: 438 VPRQIVSPQKNAPVMGIVQDTLCGVNIFTRRDTFLSR 474
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGDLVIFNRQP+LHKMSMMGHRVRV+P TFR+NLS T+PYNADFDGDEMN+H
Sbjct: 362 RVERHLVDGDLVIFNRQPSLHKMSMMGHRVRVMPHHTFRLNLSVTTPYNADFDGDEMNMH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+E++AE++ I + PRQI++PQ N PVMGIVQDTL V T+RD FL
Sbjct: 422 VPQSLESKAEIQEICMVPRQIVSPQKNAPVMGIVQDTLCGVNIFTRRDTFLS 473
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G + +PGA+Y+ RDNGERIDLRF+ + D+ LQ G++VERH+ DGDLVIFNRQP+
Sbjct: 321 ELVANGPNAHPGARYVYRDNGERIDLRFNRRGGDIPLQYGWRVERHLVDGDLVIFNRQPS 380
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVRV+P TFR+NL +
Sbjct: 381 LHKMSMMGHRVRVMPHHTFRLNLSV 405
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 131/155 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+V+ G +++PGAKY++RD+GERIDLR+ + D+ L+ GY+VERH+ D D+VIFNR
Sbjct: 326 KLQEMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLRIGYRVERHMLDDDVVIFNR 385
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH+PQS ETRAEV I +
Sbjct: 386 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVTEICM 445
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P+QI++PQ+N PVMGIVQDTL A+ TKRD L
Sbjct: 446 VPKQIVSPQSNMPVMGIVQDTLCAINIFTKRDTLL 480
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 370 RVERHMLDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 429
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS ETRAEV I + P+QI++PQ+N PVMGIVQDTL A+ TKRD L
Sbjct: 430 LPQSEETRAEVTEICMVPKQIVSPQSNMPVMGIVQDTLCAINIFTKRDTLL 480
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E+V+ G +++PGAKY++RD+GERIDLR+ + D+ L+ GY+VERH+ D D+VIFNRQP+
Sbjct: 329 EMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLRIGYRVERHMLDDDVVIFNRQPS 388
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 389 LHKMSMMGHRVKVMPYSTFRLNLSV 413
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LVR G +Q+PGAKY++RD+G RIDLR D+ LQ G+ VERHI +GD+VIFNR
Sbjct: 312 KMQNLVRNGPTQHPGAKYVIRDDGVRIDLRHRRATGDMALQVGFCVERHIDNGDVVIFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH VRVLP+STFR+NLS TSPYNADFDGDEMN+HVPQS E R+EV + +
Sbjct: 372 QPSLHKMSMMGHHVRVLPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSHEARSEVLELMM 431
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+QI++PQ N+PVMGIVQD+L VRK TKRD FL K
Sbjct: 432 VSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSK 468
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI +GD+VIFNRQP+LHKMSMMGH VRVLP+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 357 VERHIDNGDVVIFNRQPSLHKMSMMGHHVRVLPFSTFRLNLSVTSPYNADFDGDEMNMHV 416
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E R+EV + + +QI++PQ N+PVMGIVQD+L VRK TKRD FL
Sbjct: 417 PQSHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFL 466
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LVR G +Q+PGAKY++RD+G RIDLR D+ LQ G+ VERHI +GD+VIFNRQ
Sbjct: 313 MQNLVRNGPTQHPGAKYVIRDDGVRIDLRHRRATGDMALQVGFCVERHIDNGDVVIFNRQ 372
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGH VRVLP+STFR+NL +
Sbjct: 373 PSLHKMSMMGHHVRVLPFSTFRLNLSV 399
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 137/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PW T +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 295 VPW-TIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQD+L RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFI 473
Query: 241 DK 242
K
Sbjct: 474 AK 475
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQD+L RK+TKRD F+
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFI 473
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 319 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 378
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 379 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 406
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 133/168 (79%), Gaps = 4/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ +++ ELVR G S++PGAK+I+R++G RIDLR+H + ++ LQ G+ VER
Sbjct: 392 RVTPYNIHKLS----ELVRNGPSEHPGAKHIIREDGSRIDLRYHKRAGEIQLQNGWIVER 447
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
HI DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 448 HIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 507
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETR+EV N+ P I++PQ N P+MGIVQDT+ + MTKRD +D
Sbjct: 508 HETRSEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTKRDTMMD 555
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETR+EV N+ P I++PQ N P+MGIVQDT+ + MTKRD +D
Sbjct: 505 PQSHETRSEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTKRDTMMD 555
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G S++PGAK+I+R++G RIDLR+H + ++ LQ G+ VERHI DGD +IFNRQ
Sbjct: 401 LSELVRNGPSEHPGAKHIIREDGSRIDLRYHKRAGEIQLQNGWIVERHIVDGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVKVMPYSTFRLNLSV 487
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 134/169 (79%), Gaps = 5/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G ++YPGA+Y+VRD G+RIDLR++ K +D LQ G+ VER
Sbjct: 400 RVTPYNITYLQ----ELVRNGPTEYPGARYVVRDTGDRIDLRYN-KRADTFLQYGWIVER 454
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 455 HLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 514
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T RD F+D+
Sbjct: 515 EETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDR 563
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 100/127 (78%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T
Sbjct: 436 LRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVT 495
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMNLHVPQS ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T
Sbjct: 496 PPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFT 555
Query: 347 KRDVFLD 353
RD F+D
Sbjct: 556 LRDCFMD 562
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++YPGA+Y+VRD G+RIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 411 ELVRNGPTEYPGARYVVRDTGDRIDLRYN-KRADTFLQYGWIVERHLKDGDYVLFNRQPS 469
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HR++++P+STFR+NL +
Sbjct: 470 LHKMSMMSHRIKLMPYSTFRLNLSV 494
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 104/169 (61%), Positives = 134/169 (79%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ M+ +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VER
Sbjct: 385 RVTPFNMAAMH----QLISNGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVER 440
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 441 HLRDEDLVLFNRQPSLHKMSIMSHRVKVFHWSTFRLNLSVTSPYNADFDGDEMNLHVPQS 500
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ RAE + + + + IITPQ+NRPVMGIVQD+L V+K TKRD+F++K
Sbjct: 501 LTARAEAQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIFIEK 549
Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/111 (70%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD DLV+FNRQP+LHKMS+M HRV+V WSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 438 VERHLRDEDLVLFNRQPSLHKMSIMSHRVKVFHWSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ RAE + + + + IITPQ+NRPVMGIVQD+L V+K TKRD+F++
Sbjct: 498 PQSLTARAEAQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIFIE 548
Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +L+ G ++PGAKYI+R++G RIDLR+ SDL L+CG+ VERH+RD DLV+FNRQ
Sbjct: 394 MHQLISNGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDEDLVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M HRV+V WSTFR+NL
Sbjct: 454 PSLHKMSIMSHRVKVFHWSTFRLNL 478
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLRF +
Sbjct: 379 VPWS-IALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKRS 437
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 438 SDRHLELGYKVERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 497
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ +++PQ+NRPV+GIVQDTL RK+TKRD F+
Sbjct: 498 FDGDEMNMHVPQSFETRAEVLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 557
Query: 241 DK 242
+K
Sbjct: 558 EK 559
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 447 KVERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 506
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ +++PQ+NRPV+GIVQDTL RK+TKRD F++
Sbjct: 507 VPQSFETRAEVLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIE 558
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLRF + SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 403 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRFLKRSSDRHLELGYKVERHMNDGDFVLFNR 462
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 463 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 490
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 128/155 (82%), Gaps = 1/155 (0%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ + V G +++PGAK+++RDNG+RIDLR H + + LQ GY VERH+RD D+VIFNRQ
Sbjct: 319 LTKTVENGPNEHPGAKFVIRDNGDRIDLR-HARAGAIALQVGYIVERHMRDDDVVIFNRQ 377
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMNLH+PQS ET AE+ + +
Sbjct: 378 PSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHLPQSYETAAEIVELCIV 437
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+QI++PQ N PVMGIVQDTL VRK TKRD FLD
Sbjct: 438 PKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLD 472
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 97/111 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 362 VERHMRDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNLHL 421
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ET AE+ + + P+QI++PQ N PVMGIVQDTL VRK TKRD FLD
Sbjct: 422 PQSYETAAEIVELCIVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLD 472
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAK+++RDNG+RIDLR H + + LQ GY VERH+RD D+VIFNRQ
Sbjct: 319 LTKTVENGPNEHPGAKFVIRDNGDRIDLR-HARAGAIALQVGYIVERHMRDDDVVIFNRQ 377
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 378 PSLHKMSMMGHRVKVMPYSTFRLNLSV 404
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/159 (63%), Positives = 129/159 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV+ G +++PGAKY++RD+GERIDLR H + D++L G+KVERHI DGD +IFNR
Sbjct: 322 KLHELVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
I++PQ N P+MGIVQDTL + KM +RDV L + +
Sbjct: 442 VSLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVVLSEAQ 480
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + I++PQ N P+MGIVQDTL + KM +RDV L
Sbjct: 426 VPQSEETRAEISQLCMVSLNIVSPQRNWPIMGIVQDTLCGIYKMCRRDVVL 476
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++RD+GERIDLR H + D++L G+KVERHI DGD +IFNRQ
Sbjct: 323 LHELVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|397135824|gb|AFO11407.1| RNA polymerase I, partial [Cyniclomyces guttulatus]
Length = 871
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 128/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 200 RLTKLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 260 QPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N P MGIVQDTL +R +T +D F++
Sbjct: 320 VPLQIVSPQSNXPCMGIVQDTLCGIRILTLKDTFIE 355
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 93/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N P MGIVQDTL +R +T +D F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNXPCMGIVQDTLCGIRILTLKDTFIE 355
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 201 LTKLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVVPYSTFRLNLSV 287
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/168 (63%), Positives = 135/168 (80%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + + LVR G +YPGA+Y+VRD+GERIDLR++ K +D LQ G+ VER
Sbjct: 269 RVTPYNIEWLQM----LVRNGPREYPGARYVVRDSGERIDLRYN-KRADTSLQYGWIVER 323
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+++GD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+PQS
Sbjct: 324 HLKNGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 383
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK+T RD FLD
Sbjct: 384 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKITLRDNFLD 431
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+++GD V+FNRQP+LHKMSMM HRV+++P+STFR+NLS T PYNADFDGDEMN+H+
Sbjct: 321 VERHLKNGDYVLFNRQPSLHKMSMMSHRVKIMPYSTFRLNLSVTPPYNADFDGDEMNMHI 380
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK+T RD FLD
Sbjct: 381 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKITLRDNFLD 431
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +YPGA+Y+VRD+GERIDLR++ K +D LQ G+ VERH+++GD V+FNRQP+L
Sbjct: 281 LVRNGPREYPGARYVVRDSGERIDLRYN-KRADTSLQYGWIVERHLKNGDYVLFNRQPSL 339
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+++P+STFR+NL +
Sbjct: 340 HKMSMMSHRVKIMPYSTFRLNLSV 363
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
RV P N+ +M ELVR G Q+PGAK+++R++G RIDLR+H + ++ LQ G+
Sbjct: 385 RVLTFPERVTVYNIHKMQELVRNGPDQHPGAKHVIREDGSRIDLRYHKRAGEIQLQLGWI 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ ETRAEV N+ P I++PQ N P+MGIVQDT+ MTK+DV +D E
Sbjct: 505 PQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGCWMMTKKDVMIDYQE 558
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ ETRAEV N+ P I++PQ N P+MGIVQDT+ MTK+DV +D
Sbjct: 505 PQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGCWMMTKKDVMID 555
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVR G Q+PGAK+++R++G RIDLR+H + ++ LQ G+ VERHI DGD +IFNRQ
Sbjct: 401 MQELVRNGPDQHPGAKHVIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFRMNL +
Sbjct: 461 PSLHKESMMGHRVKVMPYSTFRMNLSV 487
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 377 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 435
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 436 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 495
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 496 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 555
Query: 241 DK 242
+K
Sbjct: 556 EK 557
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 445 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 505 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 556
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 401 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 460
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 461 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 488
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 346 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 404
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 405 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 464
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 465 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 524
Query: 241 DK 242
+K
Sbjct: 525 EK 526
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 414 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 473
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 474 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 525
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 370 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 429
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 430 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 457
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 324 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 382
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 383 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 442
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 443 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 502
Query: 241 DK 242
+K
Sbjct: 503 EK 504
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 392 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 451
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 452 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 503
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 348 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 407
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 408 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 435
>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
Length = 872
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 129/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++ Q+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSAQSNKPVMGIVQDTLCGIRKMTLRDSFIE 355
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++ Q+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSPETRAELSQICAVPLQIVSAQSNKPVMGIVQDTLCGIRKMTLRDSFIE 355
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VER
Sbjct: 385 RVTPYNIAYLQ----ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVER 439
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 440 HLKDGDFVLFNRQPSLHKMSMMSHRVKLMYYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 499
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 500 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 547
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 5/137 (3%)
Query: 222 IVQDTLTAV--RKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW 276
+V+DT + R + D FL VERH++DGD V+FNRQP+LHKMSMM HRV+++ +
Sbjct: 411 VVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMYY 470
Query: 277 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I PRQII+PQ N+PVMGIVQ
Sbjct: 471 STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 530
Query: 337 DTLTAVRKMTKRDVFLD 353
DTL +RK T RD FLD
Sbjct: 531 DTLCGIRKFTLRDTFLD 547
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 396 ELVRNGPTAYPGARYVVRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDFVLFNRQPS 454
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++ +STFR+NL +
Sbjct: 455 LHKMSMMSHRVKLMYYSTFRLNLSV 479
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 375 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 433
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 434 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 493
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 494 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 553
Query: 241 DK 242
+K
Sbjct: 554 EK 555
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 443 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 503 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 554
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 399 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 458
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 459 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 486
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 375 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 433
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 434 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 493
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 494 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 553
Query: 241 DK 242
+K
Sbjct: 554 EK 555
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 443 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 503 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 554
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 399 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 458
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 459 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 486
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 224 bits (572), Expect = 4e-56, Method: Composition-based stats.
Identities = 103/168 (61%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VER
Sbjct: 394 RVTPYNRAWLS----ELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVER 448
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD ++FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 449 HLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 508
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 509 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 556
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 76/111 (68%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD ++FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 446 VERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 505
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 506 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 556
Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/83 (61%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD ++FNRQP+
Sbjct: 405 ELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYILFNRQPS 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HR++++ +STFR+NL
Sbjct: 464 LHKMSMMSHRIKLMDYSTFRLNL 486
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 132/168 (78%), Gaps = 4/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G ++PGAK+I+RD+G RIDLR+H + +++L G+ VER
Sbjct: 392 RVTPYNKHKLT----ELVRNGPLEHPGAKFIIRDDGSRIDLRYHKRAGEINLMVGWIVER 447
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+ D D +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 448 HVVDNDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 507
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAEV N+ P I++PQ N P+MGIVQDT+ + MT+RDVFLD
Sbjct: 508 HETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVFLD 555
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHVVDNDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAEV N+ P I++PQ N P+MGIVQDT+ + MT+RDVFLD
Sbjct: 505 PQSHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVFLD 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G ++PGAK+I+RD+G RIDLR+H + +++L G+ VERH+ D D +IFNRQ
Sbjct: 401 LTELVRNGPLEHPGAKFIIRDDGSRIDLRYHKRAGEINLMVGWIVERHVVDNDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVKVMPYSTFRLNLSV 487
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 137/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
D HL+ GYKVERH+ DGD V FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 GDHHLELGYKVERHLNDGDFVFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 69/88 (78%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K D HL+ GYKVERH+ DGD V FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVFFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 294 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 352
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 353 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 412
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 413 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 472
Query: 241 DK 242
+K
Sbjct: 473 EK 474
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 362 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 421
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 422 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 473
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 318 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 377
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 378 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 405
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG A+YI+R++G+R+DLRF K
Sbjct: 298 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIREDGQRLDLRFLKKS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGH++R++P+STFR+NLS TSPYNAD
Sbjct: 357 SDRHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F+
Sbjct: 417 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFI 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGH++R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPV+GIVQDTL RK+TKRD F++
Sbjct: 426 VPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIE 477
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG A+YI+R++G+R+DLRF K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVEYGPHPPPGKTGARYIIREDGQRLDLRFLKKSSDRHLELGYKVERHLNDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGH++R++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHKIRIMPFSTFRLNLSV 409
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++R +GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNDHPGAKYVIRADGERIDLRHHKRAGEIPLQYGWKVERHIVDGDFIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I+ PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 442 VPLNIVPPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 478
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I+ PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 426 VPQSEETRAEVSQLCMVPLNIVPPQRNGPLMGIVQDTLCGIYKMCRRDVFL 476
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++R +GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNDHPGAKYVIRADGERIDLRHHKRAGEIPLQYGWKVERHIVDGDFIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ +
Sbjct: 298 VPWS-IALNLTYPEIVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRS 356
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGDLV+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 357 SDHHLELGYKVERHLNDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 416
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TK D F
Sbjct: 417 FDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFT 476
Query: 241 DK 242
+K
Sbjct: 477 EK 478
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGDLV+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLNDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TK D F +
Sbjct: 426 VPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTE 477
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ + SD HL+ GYKVERH+ DGDLV+FNR
Sbjct: 322 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDLVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 409
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 137/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 377 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 435
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 436 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 495
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD +
Sbjct: 496 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLI 555
Query: 241 DK 242
+K
Sbjct: 556 EK 557
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 445 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD ++
Sbjct: 505 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIE 556
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 401 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 460
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 461 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 488
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 307 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 365
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 366 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 425
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD +
Sbjct: 426 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLI 485
Query: 241 DK 242
+K
Sbjct: 486 EK 487
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 375 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 434
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD ++
Sbjct: 435 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIE 486
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 331 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 390
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 391 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 418
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 137/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD +
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLI 554
Query: 241 DK 242
+K
Sbjct: 555 EK 556
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD ++
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIE 555
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 136/172 (79%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+Y++RD GERIDLR H + S++ LQ G+K
Sbjct: 381 RTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVIRDTGERIDLRHHKRASEMTLQYGWK 440
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 441 VERHIQDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 500
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL +
Sbjct: 501 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTR 552
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 440 KVERHIQDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 500 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 550
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 73/84 (86%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + S++ LQ G+KVERHI+DGD+++FNRQP+L
Sbjct: 400 LVANGPTEHPGARYVIRDTGERIDLRHHKRASEMTLQYGWKVERHIQDGDVILFNRQPSL 459
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 HKESMMGHRVRVMPYSTFRLNLSV 483
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/160 (64%), Positives = 131/160 (81%), Gaps = 3/160 (1%)
Query: 86 RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVI 142
R+ ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+
Sbjct: 319 RLKELVENGPHPPPGKTGAKYIIREDGQRVDLRYLRKSSDHHLELGYKVERHLIDGDFVL 378
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+HVPQ ETRAEV
Sbjct: 379 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQCFETRAEVLE 438
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++K
Sbjct: 439 LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 478
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 366 KVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 426 VPQCFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 477
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 322 ELVENGPHPPPGKTGAKYIIREDGQRVDLRYLRKSSDHHLELGYKVERHLIDGDFVLFNR 381
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LHKMS+MGHR++++P+STFR+NL
Sbjct: 382 QPSLHKMSIMGHRIKIMPYSTFRLNL 407
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 224 bits (570), Expect = 6e-56, Method: Composition-based stats.
Identities = 101/169 (59%), Positives = 132/169 (78%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + LV +G + PGA+Y+V+D+G+RIDLR+ P + + L G+ VER
Sbjct: 415 RVTPYNITALQ----ALVAKGPDELPGARYVVKDSGDRIDLRYLPSGTSIDLAYGWIVER 470
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+R+GD V+FNRQP+LHKMSMM HRV++LP+STFR+NLS T PYNADFDGDEMN+HVPQS
Sbjct: 471 HLRNGDYVLFNRQPSLHKMSMMAHRVKLLPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 530
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE++ I PRQI++PQ N+PVMGIVQDTL +RK T RD F+D+
Sbjct: 531 EETRAELQQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDCFMDR 579
Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats.
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+R+GD V+FNRQP+LHKMSMM HRV++LP+STFR+NLS T PYNADFDGDEMN+HV
Sbjct: 468 VERHLRNGDYVLFNRQPSLHKMSMMAHRVKLLPYSTFRLNLSVTPPYNADFDGDEMNMHV 527
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE++ I PRQI++PQ N+PVMGIVQDTL +RK T RD F+D
Sbjct: 528 PQSEETRAELQQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDCFMD 578
Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/82 (59%), Positives = 68/82 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV +G + PGA+Y+V+D+G+RIDLR+ P + + L G+ VERH+R+GD V+FNRQP+L
Sbjct: 427 LVAKGPDELPGARYVVKDSGDRIDLRYLPSGTSIDLAYGWIVERHLRNGDYVLFNRQPSL 486
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMM HRV++LP+STFR+NL
Sbjct: 487 HKMSMMAHRVKLLPYSTFRLNL 508
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 134/169 (79%), Gaps = 5/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELV+ G ++YPGA+Y+VRD G+RIDLR++ K +D LQ G+ VER
Sbjct: 398 RVTPYNISYLQ----ELVQNGPTEYPGARYVVRDTGDRIDLRYN-KRADTFLQYGWIVER 452
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 453 HLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 512
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T RD F+D+
Sbjct: 513 EETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDR 561
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 100/127 (78%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T
Sbjct: 434 LRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMPYSTFRLNLSVT 493
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMNLHVPQS ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T
Sbjct: 494 PPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFT 553
Query: 347 KRDVFLD 353
RD F+D
Sbjct: 554 LRDCFMD 560
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G ++YPGA+Y+VRD G+RIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 409 ELVQNGPTEYPGARYVVRDTGDRIDLRYN-KRADTFLQYGWIVERHLKDGDYVLFNRQPS 467
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HR++++P+STFR+NL +
Sbjct: 468 LHKMSMMSHRIKLMPYSTFRLNLSV 492
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGN---SQYPGAKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G GAKYI+R++G+R+DLR+ K
Sbjct: 295 VPWS-IALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIREDGQRLDLRYLKKS 353
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 354 SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 413
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F+
Sbjct: 414 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 473
Query: 241 DK 242
+K
Sbjct: 474 EK 475
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 363 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+TKRD F++
Sbjct: 423 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 474
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+
Sbjct: 333 GAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 392
Query: 74 RVLPWSTFRMNLRM 87
+++P+STFR+NL +
Sbjct: 393 KIMPYSTFRLNLSV 406
>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
Length = 995
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 302 KLHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNR 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDG EMNLHVPQS ETRAE+ + +
Sbjct: 362 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGGEMNLHVPQSEETRAEINQLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 422 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 458
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDG EMNLH
Sbjct: 346 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGGEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 406 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 456
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 303 LHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQ 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 363 PSLHKESMMGHRVRVMPYSTFRLNLSV 389
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 314 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 373
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
P HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 374 HPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 433
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 434 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSK 470
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNR P HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 358 KVERHIVDGDYIIFNRHPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 417
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 418 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 468
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 315 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRH 374
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P HK SMMGHRVRV+P+STFR+NL +
Sbjct: 375 PXXHKESMMGHRVRVMPYSTFRLNLSV 401
>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
Length = 995
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG+ +IFNR
Sbjct: 315 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNR 374
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 375 QPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 434
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 435 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 471
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DG+ +IFNRQP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 359 KVERHIVDGNYIIFNRQPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 419 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 469
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG+ +IFNRQ
Sbjct: 316 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNRQ 375
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P HK SMMGHRVRV+P+STFR+NL +
Sbjct: 376 PXXHKESMMGHRVRVMPYSTFRLNLSV 402
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/176 (60%), Positives = 134/176 (76%), Gaps = 10/176 (5%)
Query: 76 LPWSTFRMNLRMFE---------LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQ 126
+PWS +NL E LVR + KYI+RD+G+R DLR+ K SD HL+
Sbjct: 378 VPWS-IALNLTYPETVTPYNIERLVRLVFISFSETKYIIRDDGQRSDLRYLKKSSDQHLE 436
Query: 127 CGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 186
GYKVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEM
Sbjct: 437 LGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEM 496
Query: 187 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
N+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++K
Sbjct: 497 NMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEK 552
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 440 KVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 500 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 551
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR + KYI+RD+G+R DLR+ K SD HL+ GYKVERH++DGD V+FNRQP+L
Sbjct: 400 LVRLVFISFSETKYIIRDDGQRSDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSL 459
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMS+MGHR+R++P+STFR+NL +
Sbjct: 460 HKMSIMGHRIRIMPYSTFRLNLSV 483
>gi|343172362|gb|AEL98885.1| DNA-directed RNA polymerase II subunit, partial [Silene latifolia]
gi|343172364|gb|AEL98886.1| DNA-directed RNA polymerase II subunit, partial [Silene latifolia]
Length = 408
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 131/160 (81%), Gaps = 3/160 (1%)
Query: 86 RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVI 142
R+ ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+
Sbjct: 115 RLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 174
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV
Sbjct: 175 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 234
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + P+ I++PQ N+PVMGIVQDTL RK+TKRD F++K
Sbjct: 235 LMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEK 274
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 162 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 221
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ N+PVMGIVQDTL RK+TKRD F++
Sbjct: 222 VPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIE 273
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 118 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 177
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 178 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 205
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNDHPGAKYVLRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 382 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P +++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 442 VPLNVVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 478
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P +++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 426 VPQSEETRAEVNQLCMVPLNVVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 476
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNDHPGAKYVLRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESMMGHRVRVMPYSTFRLNLSV 409
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + +N+ ++ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+K
Sbjct: 301 RILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWK 360
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 361 VERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 420
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+ K
Sbjct: 421 PQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITK 472
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 360 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+
Sbjct: 420 VPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFI 470
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+KVERHI DGD +IFNRQ
Sbjct: 317 LHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQ 376
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 377 PSLHKESMMGHRVRVMPYSTFRLNLSV 403
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + +N+ ++ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+K
Sbjct: 385 RILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWK 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+ K
Sbjct: 505 PQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITK 556
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+
Sbjct: 504 VPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFI 554
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+KVERHI DGD +IFNRQ
Sbjct: 401 LHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 131/155 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E+V+ G +++PGAKY++RD+GERIDLR+ + D+ LQ GY+VER++ D D+VIFNR
Sbjct: 326 KLQEMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNR 385
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH+PQS ETRAE+ + +
Sbjct: 386 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCM 445
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P+QI++PQ N+PVMGIVQDTL A+ TKRD +
Sbjct: 446 VPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLM 480
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VER++ D D+VIFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 370 RVERNLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 429
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQS ETRAE+ + + P+QI++PQ N+PVMGIVQDTL A+ TKRD +
Sbjct: 430 LPQSEETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLM 480
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 74/85 (87%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E+V+ G +++PGAKY++RD+GERIDLR+ + D+ LQ GY+VER++ D D+VIFNRQP+
Sbjct: 329 EMVQNGPNEHPGAKYVIRDSGERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPS 388
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 389 LHKMSMMGHRVKVMPYSTFRLNLSV 413
>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
Length = 1023
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/174 (59%), Positives = 133/174 (76%), Gaps = 1/174 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + + N+ ++ LV G Q+PGA+YI+R GERIDLRFH S + LQ G+K
Sbjct: 306 RTLTYPETVTQYNINKLARLVASGPEQHPGARYIIRPQGERIDLRFHKNTSQIILQNGWK 365
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 366 VERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 425
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 426 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 479
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 108/149 (72%), Gaps = 6/149 (4%)
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHK 263
H R II PQ R + ++T + + KVERHI DGD+++FNRQP+LHK
Sbjct: 333 HPGARYIIRPQGERIDLRFHKNTSQIILQNGW------KVERHIMDGDVILFNRQPSLHK 386
Query: 264 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 323
SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS ETRAE+ + + P I+
Sbjct: 387 ESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLNIV 446
Query: 324 TPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 447 SPQRNGPLMGIVQDTLCGIYKICRRDIFL 475
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 69/84 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G Q+PGA+YI+R GERIDLRFH S + LQ G+KVERHI DGD+++FNRQP+L
Sbjct: 325 LVASGPEQHPGARYIIRPQGERIDLRFHKNTSQIILQNGWKVERHIMDGDVILFNRQPSL 384
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 385 HKESMMGHRVRVMPYSTFRLNLSV 408
>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
Length = 872
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 128/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ E VR G + +PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 KLTEYVRNGPNDHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQLPETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD F++
Sbjct: 304 VPQLPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 355
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G + +PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVRNGPNDHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 138/182 (75%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+R++G+R+DLR+ K
Sbjct: 376 VPWS-IALNLTYPETVTPYNIERLKELVLNGPHPPPGKTGAKYIIREDGQRLDLRYVKKS 434
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNAD
Sbjct: 435 SDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 494
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL RK+TKRD +
Sbjct: 495 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLI 554
Query: 241 DK 242
+K
Sbjct: 555 EK 556
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 444 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL RK+TKRD ++
Sbjct: 504 VPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLIE 555
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+R++G+R+DLR+ K SD HL+ GYKVERH+ DGD V+FNR
Sbjct: 400 ELVLNGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNR 459
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR++++P+STFR+NL +
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSV 487
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + +N+ ++ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+K
Sbjct: 385 RILTYPETVTPLNIDKLHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWK 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 445 VERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+ K
Sbjct: 505 PQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITK 556
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V K+ +RDVF+
Sbjct: 504 VPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFI 554
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G ++PGAKY++R +G RIDLR H + + L+ G+KVERHI DGD +IFNRQ
Sbjct: 401 LHQLVKNGPDEHPGAKYVIRSDGTRIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 303 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+ HK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 363 QPSXHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAEINQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 423 VPLNIVSPQKNGPLMGIVQDTLCGIYKICRRDVFLTK 459
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+ HK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDYIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 407 VPQSEETRAEINQLCMVPLNIVSPQKNGPLMGIVQDTLCGIYKICRRDVFL 457
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 304 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+ HK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 PSXHKESMMGHRVRVMPYSTFRLNLSV 390
>gi|83320476|gb|ABC02865.1| RNA polymerase II largest subunit, partial [Piptocephalis
corymbifera]
Length = 565
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G + +PGAKY+ D G+RIDLR+ D+ LQ G++VERH+ DGDLV+FNR
Sbjct: 121 RLMQLVRNGPTVHPGAKYVFTDAGDRIDLRYKTIGEDVPLQLGWRVERHLVDGDLVVFNR 180
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E++AE+ + +
Sbjct: 181 QPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYESKAEIRELCM 240
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ II+PQ N PVMGIVQDTL + T+RD FLD+
Sbjct: 241 VPKNIISPQKNAPVMGIVQDTLCGINLFTRRDTFLDR 277
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 96/112 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGDLV+FNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 165 RVERHLVDGDLVVFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 224
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E++AE+ + + P+ II+PQ N PVMGIVQDTL + T+RD FLD
Sbjct: 225 VPQSYESKAEIRELCMVPKNIISPQKNAPVMGIVQDTLCGINLFTRRDTFLD 276
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G + +PGAKY+ D G+RIDLR+ D+ LQ G++VERH+ DGDLV+FNRQ
Sbjct: 122 LMQLVRNGPTVHPGAKYVFTDAGDRIDLRYKTIGEDVPLQLGWRVERHLVDGDLVVFNRQ 181
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRVRV+P+STFR+NL +
Sbjct: 182 PSLHKMSMMGHRVRVMPYSTFRLNLSV 208
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 128/152 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+ G +++PGAKY++RD+GERIDL++ + D+ LQ GYKVER + D D+VIFNR
Sbjct: 308 RLQELVQNGPTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNR 367
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+ +STFR+NLS TSPYNADFDGDEMNLH+PQS ETRAEV + +
Sbjct: 368 QPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCM 427
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 237
P+QI++PQ NRP+MGIVQDTL A+ TKRD
Sbjct: 428 VPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRD 459
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/108 (72%), Positives = 93/108 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVER + D D+VIFNRQP+LHKMSMMGHRV+V+ +STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 352 KVERSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLH 411
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
+PQS ETRAEV + + P+QI++PQ NRP+MGIVQDTL A+ TKRD
Sbjct: 412 LPQSEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRD 459
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G +++PGAKY++RD+GERIDL++ + D+ LQ GYKVER + D D+VIFNRQP+
Sbjct: 311 ELVQNGPTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPS 370
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+ +STFR+NL +
Sbjct: 371 LHKMSMMGHRVKVMDYSTFRLNLSV 395
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 133/164 (81%), Gaps = 1/164 (0%)
Query: 79 STFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 138
+ F +N +M + V G +Q+PGA+YI++++G RIDL SD LQ G+ VERH++D
Sbjct: 314 TNFNLN-KMNQYVANGPTQHPGARYIIQEDGTRIDLHIARSHSDRTLQPGFIVERHLQDN 372
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
D++IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHVPQS+ +RA
Sbjct: 373 DVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSLGSRA 432
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
E+E I + + I+TPQ+NRPVMGI+QDTLT R+MT RD F+++
Sbjct: 433 EIEEIMMVHKNILTPQSNRPVMGIIQDTLTVARRMTFRDCFIER 476
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 99/111 (89%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++D D++IFNRQPTLHKMSMMGHRV+VLPWSTFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 365 VERHLQDNDVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ +RAE+E I + + I+TPQ+NRPVMGI+QDTLT R+MT RD F++
Sbjct: 425 PQSLGSRAEIEEIMMVHKNILTPQSNRPVMGIIQDTLTVARRMTFRDCFIE 475
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M + V G +Q+PGA+YI++++G RIDL SD LQ G+ VERH++D D++IFNRQ
Sbjct: 321 MNQYVANGPTQHPGARYIIQEDGTRIDLHIARSHSDRTLQPGFIVERHLQDNDVIIFNRQ 380
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRV+VLPWSTFRMNL +
Sbjct: 381 PTLHKMSMMGHRVKVLPWSTFRMNLSV 407
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 128/152 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+ G +++PGAKY++RD+GERIDL++ + D+ LQ GYKVER + D D+VIFNR
Sbjct: 327 RLQELVQNGPTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNR 386
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+ +STFR+NLS TSPYNADFDGDEMNLH+PQS ETRAEV + +
Sbjct: 387 QPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCM 446
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 237
P+QI++PQ NRP+MGIVQDTL A+ TKRD
Sbjct: 447 VPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRD 478
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/108 (72%), Positives = 93/108 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVER + D D+VIFNRQP+LHKMSMMGHRV+V+ +STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 371 KVERSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLH 430
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
+PQS ETRAEV + + P+QI++PQ NRP+MGIVQDTL A+ TKRD
Sbjct: 431 LPQSEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRD 478
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G +++PGAKY++RD+GERIDL++ + D+ LQ GYKVER + D D+VIFNRQP+
Sbjct: 330 ELVQNGPTEHPGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPS 389
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+ +STFR+NL +
Sbjct: 390 LHKMSMMGHRVKVMDYSTFRLNLSV 414
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/152 (67%), Positives = 124/152 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVR G ++PGA YIVR +G+RI L+F P+ D LQ G VERH++DGD VIFNR
Sbjct: 310 RLQELVRNGALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNR 369
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+++P+STFR+NLS T+PYNADFDGDEMNLH PQS ETRAE++ I +
Sbjct: 370 QPSLHKMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDGDEMNLHAPQSYETRAEIKEIMM 429
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 237
PRQII+PQ N+PVMGIVQDT +RK T RD
Sbjct: 430 VPRQIISPQANKPVMGIVQDTFCGIRKFTLRD 461
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 95/109 (87%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH++DGD VIFNRQP+LHKMSMMGHRV+++P+STFR+NLS T+PYNADFDGDEMNL
Sbjct: 353 DTVERHLQDGDYVIFNRQPSLHKMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDGDEMNL 412
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
H PQS ETRAE++ I + PRQII+PQ N+PVMGIVQDT +RK T RD
Sbjct: 413 HAPQSYETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRD 461
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 68/83 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGA YIVR +G+RI L+F P+ D LQ G VERH++DGD VIFNRQP+
Sbjct: 313 ELVRNGALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNRQPS 372
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRV+++P+STFR+NL
Sbjct: 373 LHKMSMMGHRVKIMPFSTFRLNL 395
>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 996
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERH+ DGD + FNR
Sbjct: 316 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNR 375
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 376 QPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 435
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 436 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 472
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 91/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD + FNRQP HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 360 KVERHVVDGDYIXFNRQPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 420 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 470
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERH+ DGD + FNRQ
Sbjct: 317 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNRQ 376
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P HK SMMGHRVRV+P+STFR+NL +
Sbjct: 377 PXXHKESMMGHRVRVMPYSTFRLNLSV 403
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 133/172 (77%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P + N+ ++ +LV+ G + +PGAKYI+R++G RIDLR H + + L+ G K
Sbjct: 386 RILTYPETVTPYNIGKLHQLVQNGPNDHPGAKYIIRNDGSRIDLRHHKRAGAISLEYGNK 445
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 446 VERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 505
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV + + P I++PQ N P+MGIVQDTL V K+T+RDVFL K
Sbjct: 506 PQTEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDVFLTK 557
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 97/114 (85%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
+ +KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEM
Sbjct: 442 YGNKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEM 501
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
NLHVPQ+ ETRAEV + + P I++PQ N P+MGIVQDTL V K+T+RDVFL
Sbjct: 502 NLHVPQTEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDVFL 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKYI+R++G RIDLR H + + L+ G KVERHI DGD +IFNRQ
Sbjct: 402 LHQLVQNGPNDHPGAKYIIRNDGSRIDLRHHKRAGAISLEYGNKVERHIVDGDFIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/170 (64%), Positives = 134/170 (78%), Gaps = 5/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKY-IVRDNGERIDLRFHPKPSDLHLQCGYKVE 132
RV P++ +M ELV+RGNSQYPGAK+ I++ NG+RIDLRF K DL L+CG VE
Sbjct: 364 RVAPFNIEKMQ----ELVQRGNSQYPGAKFCIIKKNGDRIDLRFPSKSPDLRLECGDIVE 419
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RHI DGDLV+ NRQP+L K +MGHRV+VLP STF +N S + YNA+FDGDEMNLHVPQ
Sbjct: 420 RHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANFDGDEMNLHVPQ 479
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
SMETR+EVE++ V+ R IITPQ ++PVMGIVQDTL K+TKRDVFL+K
Sbjct: 480 SMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLEK 529
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGDLV+ NRQP+L K +MGHRV+VLP STF +N S + YNA+FDGDEMNL
Sbjct: 416 DIVERHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANFDGDEMNL 475
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQSMETR+EVE++ V+ R IITPQ ++PVMGIVQDTL K+TKRDVFL+
Sbjct: 476 HVPQSMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLE 528
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 1 MFELVRRGNSQYPGAKY-IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M ELV+RGNSQYPGAK+ I++ NG+RIDLRF K DL L+CG VERHI DGDLV+ NR
Sbjct: 373 MQELVQRGNSQYPGAKFCIIKKNGDRIDLRFPSKSPDLRLECGDIVERHICDGDLVVLNR 432
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMN 84
QP+L K +MGHRV+VLP STF +N
Sbjct: 433 QPSLRKEGVMGHRVKVLPCSTFCLN 457
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/152 (67%), Positives = 125/152 (82%), Gaps = 1/152 (0%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LVR G +YPGA+Y++RD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 436 LVRNGPREYPGARYVIRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDYVLFNRQPSL 494
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMM HRVR++P+STFR+NLS T PYNADFDGDEMN+HVPQS ETRAE+ I +Q
Sbjct: 495 HKMSMMCHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVAKQ 554
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
II+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 555 IISPQANKPVMGIVQDTLCGIRKFTLRDCFLD 586
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 100/127 (78%), Gaps = 3/127 (2%)
Query: 230 VRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T
Sbjct: 460 LRYNKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMCHRVRLMPYSTFRLNLSVT 519
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
PYNADFDGDEMN+HVPQS ETRAE+ I +QII+PQ N+PVMGIVQDTL +RK T
Sbjct: 520 PPYNADFDGDEMNMHVPQSEETRAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFT 579
Query: 347 KRDVFLD 353
RD FLD
Sbjct: 580 LRDCFLD 586
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +YPGA+Y++RD GERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 436 LVRNGPREYPGARYVIRDTGERIDLRYN-KRADAFLQYGWIVERHLKDGDYVLFNRQPSL 494
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRVR++P+STFR+NL +
Sbjct: 495 HKMSMMCHRVRLMPYSTFRLNLSV 518
>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 322 KLHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNR 381
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK S MGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRA + + +
Sbjct: 382 QPSLHKESTMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAGINQLCM 441
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 442 VPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSK 478
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK S MGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 366 KVERHIIDGDFIIFNRQPSLHKESTMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRA + + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 426 VPQSEETRAGINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFL 476
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++R++GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 323 LHQLVKNGPNEHPGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK S MGHRVRV+P+STFR+NL +
Sbjct: 383 PSLHKESTMGHRVRVMPYSTFRLNLSV 409
>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
Length = 920
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/170 (64%), Positives = 134/170 (78%), Gaps = 5/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKY-IVRDNGERIDLRFHPKPSDLHLQCGYKVE 132
RV P++ +M ELV+RGNSQYPGAK+ I++ NG+RIDLRF K DL L+CG VE
Sbjct: 381 RVAPFNIEKMQ----ELVQRGNSQYPGAKFCIIKKNGDRIDLRFPSKSPDLRLECGDIVE 436
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RHI DGDLV+ NRQP+L K +MGHRV+VLP STF +N S + YNA+FDGDEMNLHVPQ
Sbjct: 437 RHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANFDGDEMNLHVPQ 496
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
SMETR+EVE++ V+ R IITPQ ++PVMGIVQDTL K+TKRDVFL+K
Sbjct: 497 SMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLEK 546
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGDLV+ NRQP+L K +MGHRV+VLP STF +N S + YNA+FDGDEMNL
Sbjct: 433 DIVERHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANFDGDEMNL 492
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQSMETR+EVE++ V+ R IITPQ ++PVMGIVQDTL K+TKRDVFL+
Sbjct: 493 HVPQSMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLE 545
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 1 MFELVRRGNSQYPGAKY-IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M ELV+RGNSQYPGAK+ I++ NG+RIDLRF K DL L+CG VERHI DGDLV+ NR
Sbjct: 390 MQELVQRGNSQYPGAKFCIIKKNGDRIDLRFPSKSPDLRLECGDIVERHICDGDLVVLNR 449
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMN 84
QP+L K +MGHRV+VLP STF +N
Sbjct: 450 QPSLRKEGVMGHRVKVLPCSTFCLN 474
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 130/155 (83%), Gaps = 3/155 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G +++PGA+Y+VRD+G RIDLRF +D+ LQ GY VERHI DGD+V+FNRQP+
Sbjct: 124 KLVNNGPTEHPGARYVVRDDGNRIDLRFK---TDVVLQPGYLVERHINDGDVVLFNRQPS 180
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHR++V+P+STFR+NLS T+PYNADFDGDEMNLH+PQS+E +AE+ + + P
Sbjct: 181 LHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALVPT 240
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
QI++PQ+N+P MGIVQDTL VRK T+R+ FL+K
Sbjct: 241 QIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKA 275
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 102/122 (83%), Gaps = 3/122 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K DV L VERHI DGD+V+FNRQP+LHKMSMMGHR++V+P+STFR+NLS T+PYNA
Sbjct: 152 KTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNA 211
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQS+E +AE+ + + P QI++PQ+N+P MGIVQDTL VRK T+R+ F
Sbjct: 212 DFDGDEMNLHIPQSVEAKAELVELALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESF 271
Query: 352 LD 353
L+
Sbjct: 272 LN 273
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+Y+VRD+G RIDLRF +D+ LQ GY VERHI DGD+V+FNRQP+
Sbjct: 124 KLVNNGPTEHPGARYVVRDDGNRIDLRFK---TDVVLQPGYLVERHINDGDVVLFNRQPS 180
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 181 LHKMSMMGHRIKVMPYSTFRLNLSV 205
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ ELV+ G +++PGAKY++RD+G RIDLR H + ++ L G+K
Sbjct: 386 RTLTYPETVTPFNIAKLHELVKNGPNEHPGAKYVIRDDGTRIDLRHHKRAGEIQLAYGWK 445
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 446 VERHIVSGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 505
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV + + P I++PQ N P+MGIVQDTL + KM RDVFL K
Sbjct: 506 PQTEETRAEVMQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCHRDVFLTK 557
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHIVSGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV + + P I++PQ N P+MGIVQDTL + KM RDVFL
Sbjct: 505 VPQTEETRAEVMQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCHRDVFL 555
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++RD+G RIDLR H + ++ L G+KVERHI GD +IFNRQ
Sbjct: 402 LHELVKNGPNEHPGAKYVIRDDGTRIDLRHHKRAGEIQLAYGWKVERHIVSGDFIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
Length = 984
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 304 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 364 QPSLALESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 424 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLIK 460
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+L SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 348 KVERHIVDGDYIIFNRQPSLALESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 408 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 458
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 305 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+L SMMGHRVRV+P+STFR+NL +
Sbjct: 365 PSLALESMMGHRVRVMPYSTFRLNLSV 391
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/169 (60%), Positives = 134/169 (79%), Gaps = 5/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELV+ G ++YPGA+Y++RD G+RIDL+++ K +D LQ G+ VER
Sbjct: 316 RVTPYNISYLQ----ELVQNGPTEYPGARYVIRDTGDRIDLKYN-KRADTFLQYGWIVER 370
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 371 HLKDGDYVLFNRQPSLHKMSMMAHRIKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 430
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T RD F+D+
Sbjct: 431 EETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDR 479
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 100/126 (79%), Gaps = 4/126 (3%)
Query: 232 KMTKR-DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTS 287
K KR D FL VERH++DGD V+FNRQP+LHKMSMM HR++++P+STFR+NLS T
Sbjct: 353 KYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMAHRIKLMPYSTFRLNLSVTP 412
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 347
PYNADFDGDEMNLHVPQS ETRAE+ I PR I++PQ N+PVMGIVQDTL VRK T
Sbjct: 413 PYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTL 472
Query: 348 RDVFLD 353
RD F+D
Sbjct: 473 RDCFMD 478
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV+ G ++YPGA+Y++RD G+RIDL+++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 327 ELVQNGPTEYPGARYVIRDTGDRIDLKYN-KRADTFLQYGWIVERHLKDGDYVLFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HR++++P+STFR+NL +
Sbjct: 386 LHKMSMMAHRIKLMPYSTFRLNLSV 410
>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
Length = 1000
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG+ + FNR
Sbjct: 315 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNR 374
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+ HK SMMGHRVRVLP+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ + +
Sbjct: 375 QPSXHKESMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQESRAELQQLCL 434
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 435 VPRNIVSPQKNAPLMGIVQDTLCGIYKICRRDNFLTK 471
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DG+ + FNRQP+ HK SMMGHRVRVLP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 359 KVERHIVDGEYIXFNRQPSXHKESMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + PR I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 419 VPQSQESRAELQQLCLVPRNIVSPQKNAPLMGIVQDTLCGIYKICRRDNFL 469
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG+ + FNRQ
Sbjct: 316 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNRQ 375
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+ HK SMMGHRVRVLP+STFR+NL +
Sbjct: 376 PSXHKESMMGHRVRVLPYSTFRLNLSV 402
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 130/167 (77%), Gaps = 10/167 (5%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNR 362
Query: 146 QPTLHKMSMMGH----------RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
QP+LHK SMMGH RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E
Sbjct: 363 QPSLHKESMMGHKGHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 422
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 423 TRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 469
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 94/121 (77%), Gaps = 10/121 (8%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGH----------RVRVLPWSTFRMNLSCTSPYNA 291
KVERHI DGD +IFNRQP+LHK SMMGH RVRV+P+STFR+NLS TSPYNA
Sbjct: 347 KVERHIVDGDFIIFNRQPSLHKESMMGHKGHKESMMGHRVRVMPYSTFRLNLSVTSPYNA 406
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVF
Sbjct: 407 DFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVF 466
Query: 352 L 352
L
Sbjct: 467 L 467
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 10/97 (10%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQ 363
Query: 61 PTL----------HKMSMMGHRVRVLPWSTFRMNLRM 87
P+L HK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 PSLHKESMMGHKGHKESMMGHRVRVMPYSTFRLNLSV 400
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD FLDK
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFLDK 557
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD FLD
Sbjct: 505 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFLD 556
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
Length = 1720
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 387 RTLTYPEVVTKFNISKLTSLVRNGPNQHPGANYVIKSDGVRLDLKHNKNLDDLRLQYGWK 446
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 447 VERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHV 506
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD FL
Sbjct: 507 PQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFL 556
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 446 KVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD FL
Sbjct: 506 VPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFL 556
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQ
Sbjct: 403 LTSLVRNGPNQHPGANYVIKSDGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQ 462
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFRMNL +
Sbjct: 463 PSLHKESMMGHRVKVMPYSTFRMNLSV 489
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 128/162 (79%), Gaps = 2/162 (1%)
Query: 83 MNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLR-FHPKPSDLHLQCGYKVERHIRDGDL 140
MNL M + V G S +PGA+YI R +G R DLR P+ L L+ GYKVERH+RDGD
Sbjct: 307 MNLEMLRKAVSNGPSVWPGARYITRTDGTRFDLRHCAGNPAVLQLEPGYKVERHVRDGDY 366
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
V+FNRQP+LHKMS+MGHRV+VLPWSTFR NLS T+PYNADFDGDEMNLH+ QS ETRAE+
Sbjct: 367 VLFNRQPSLHKMSIMGHRVKVLPWSTFRCNLSVTAPYNADFDGDEMNLHLAQSQETRAEI 426
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + + P+QI++PQ N+PVMGIVQD+L + KMT RD F+D+
Sbjct: 427 KQLCLVPKQIVSPQGNKPVMGIVQDSLLGLAKMTSRDTFIDR 468
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RDGD V+FNRQP+LHKMS+MGHRV+VLPWSTFR NLS T+PYNADFDGDEMNLH
Sbjct: 356 KVERHVRDGDYVLFNRQPSLHKMSIMGHRVKVLPWSTFRCNLSVTAPYNADFDGDEMNLH 415
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+ QS ETRAE++ + + P+QI++PQ N+PVMGIVQD+L + KMT RD F+D
Sbjct: 416 LAQSQETRAEIKQLCLVPKQIVSPQGNKPVMGIVQDSLLGLAKMTSRDTFID 467
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLR-FHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G S +PGA+YI R +G R DLR P+ L L+ GYKVERH+RDGD V+FNRQP+L
Sbjct: 316 VSNGPSVWPGARYITRTDGTRFDLRHCAGNPAVLQLEPGYKVERHVRDGDYVLFNRQPSL 375
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMS+MGHRV+VLPWSTFR NL +
Sbjct: 376 HKMSIMGHRVKVLPWSTFRCNLSV 399
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 134/169 (79%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ LV G +++PGAK+I+R +G RIDLR+ SDL L G+ VER
Sbjct: 384 RVTPFNIQELS----ALVANGPTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVER 439
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RDGD+V+FNRQP+LHKMS+MGH +VL WSTFR+NLSCTSPYNADFDGDEMNLHVPQS
Sbjct: 440 HLRDGDIVLFNRQPSLHKMSIMGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQS 499
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ RAE E + +PR I++ Q+NRPVMGIVQD+L AV+KMTKRDVF+ K
Sbjct: 500 LPARAEAELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKK 548
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K D+ L VERH+RDGD+V+FNRQP+LHKMS+MGH +VL WSTFR+NLSCTSPYNA
Sbjct: 426 KSDLLLANGWIVERHLRDGDIVLFNRQPSLHKMSIMGHMAKVLDWSTFRLNLSCTSPYNA 485
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQS+ RAE E + +PR I++ Q+NRPVMGIVQD+L AV+KMTKRDVF
Sbjct: 486 DFDGDEMNLHVPQSLPARAEAELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVF 545
Query: 352 L 352
+
Sbjct: 546 V 546
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGAK+I+R +G RIDLR+ SDL L G+ VERH+RDGD+V+FNRQP+L
Sbjct: 396 LVANGPTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSL 455
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMS+MGH +VL WSTFR+NL
Sbjct: 456 HKMSIMGHMAKVLDWSTFRLNL 477
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 127/155 (81%), Gaps = 1/155 (0%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD V+FNRQ
Sbjct: 402 LSELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYVLFNRQ 460
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 461 PSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWV 520
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 521 PRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 555
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 445 VERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 505 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 555
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD V+FNRQ
Sbjct: 402 LSELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYVLFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HR++++ +STFR+NL +
Sbjct: 461 PSLHKMSMMSHRIKLMDYSTFRLNLSV 487
>gi|397135912|gb|AFO11451.1| RNA polymerase I, partial [Yamadazyma triangularis]
Length = 859
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/156 (63%), Positives = 128/156 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+ G ++ PGAKY++R NG+R+DLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 200 RLTEYVKNGPNEXPGAKYVIRXNGDRLDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 259
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMN HVPQS ETRAE+ I
Sbjct: 260 QPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNXHVPQSPETRAELSQICA 319
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 320 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM H+V+V+P+STFR+NLS TSPYNADFDGDEMN H
Sbjct: 244 KVERHLMDDDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNXH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL +RKMT RD F++
Sbjct: 304 VPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIE 355
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+ G ++ PGAKY++R NG+R+DLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 201 LTEYVKNGPNEXPGAKYVIRXNGDRLDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+V+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHKVKVMPYSTFRLNLSV 287
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 221 bits (563), Expect = 4e-55, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 5/175 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + LV G + YPGA+Y V+D GER+DL++ + LQ G+ VER
Sbjct: 395 RVTPYNIVYLQ----TLVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVER 450
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 451 HLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 510
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE-RHI 247
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD ++ +HI
Sbjct: 511 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHI 565
Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 448 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHV 507
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 508 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLD 558
Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 64/82 (78%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + YPGA+Y V+D GER+DL++ + LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 407 LVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSL 466
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMM HRV+++ +STFR+NL
Sbjct: 467 HKMSMMSHRVKLMNYSTFRLNL 488
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD FLDK
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDK 557
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD FLD
Sbjct: 505 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLD 556
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD FLDK
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDK 557
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD FLD
Sbjct: 505 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLD 556
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
Length = 984
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++R +GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 303 KLHQLVKNGPNDHPGAKYVIRADGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNR 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 363 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++ Q N P+MGIVQDTL KM +RDVF+ K
Sbjct: 423 VPLNIVSSQRNGPLMGIVQDTLCGTYKMCRRDVFMTK 459
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++ Q N P+MGIVQDTL KM +RDVF+
Sbjct: 407 VPQSEETRAEVNQLCMVPLNIVSSQRNGPLMGIVQDTLCGTYKMCRRDVFM 457
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++R +GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 304 LHQLVKNGPNDHPGAKYVIRADGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQ 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 PSLHKESMMGHRVRVMPYSTFRLNLSV 390
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 221 bits (562), Expect = 5e-55, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 5/175 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + LV G + YPGA+Y V+D GER+DL++ + LQ G+ VER
Sbjct: 395 RVTPYNIVYLQ----TLVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVER 450
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 451 HLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 510
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE-RHI 247
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD ++ +HI
Sbjct: 511 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHI 565
Score = 181 bits (460), Expect = 4e-43, Method: Composition-based stats.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 448 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHV 507
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 508 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLD 558
Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 64/82 (78%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + YPGA+Y V+D GER+DL++ + LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 407 LVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSL 466
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMM HRV+++ +STFR+NL
Sbjct: 467 HKMSMMSHRVKLMNYSTFRLNL 488
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 221 bits (562), Expect = 5e-55, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 5/175 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + LV G + YPGA+Y V+D GER+DL++ + LQ G+ VER
Sbjct: 395 RVTPYNIVYLQ----TLVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVER 450
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 451 HLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 510
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE-RHI 247
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD ++ +HI
Sbjct: 511 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHI 565
Score = 181 bits (460), Expect = 4e-43, Method: Composition-based stats.
Identities = 81/111 (72%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 448 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHV 507
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 508 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDNFLD 558
Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 64/82 (78%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + YPGA+Y V+D GER+DL++ + LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 407 LVNNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSL 466
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMM HRV+++ +STFR+NL
Sbjct: 467 HKMSMMSHRVKLMNYSTFRLNL 488
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 133/168 (79%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VER
Sbjct: 393 RVTPYNRAWLS----ELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVER 447
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD ++FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 448 HLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 507
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 508 EETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 555
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD ++FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 445 VERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 505 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 555
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD ++FNRQ
Sbjct: 402 LSELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYILFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HR++++ +STFR+NL +
Sbjct: 461 PSLHKMSMMSHRIKLMDYSTFRLNLSV 487
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 128/154 (83%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETRAE++++ P+
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPK 516
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ N+PVMGIVQD+L AV K T+RD FL K
Sbjct: 517 QIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTK 550
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD V+FNRQP+LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 438 RVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETRAE++++ P+QI++PQ N+PVMGIVQD+L AV K T+RD FL
Sbjct: 498 LAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFL 548
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 70/85 (82%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMS+MGH+V++LP+STFR+NL +
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSV 481
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 127/154 (82%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 150
V G +PGAKYI+RD+G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
KMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH+ Q+ ETRAEV+++ + P+QI
Sbjct: 453 KMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQI 512
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
++PQ NRPVMGIVQD+L AV K TKRD FL + E
Sbjct: 513 VSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDE 546
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD ++FNRQP+LHKMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 432 KVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ Q+ ETRAEV+++ + P+QI++PQ NRPVMGIVQD+L AV K TKRD FL
Sbjct: 492 LVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFL 542
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 67/83 (80%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G +PGAKYI+RD+G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMS+MGHR ++LP+STFR+NL +
Sbjct: 453 KMSIMGHRAKILPYSTFRLNLSV 475
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 128/154 (83%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETRAE++++ P+
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPK 516
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ N+PVMGIVQD+L AV K T+RD FL K
Sbjct: 517 QIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTK 550
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD V+FNRQP+LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 438 RVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETRAE++++ P+QI++PQ N+PVMGIVQD+L AV K T+RD FL
Sbjct: 498 LAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFL 548
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 70/85 (82%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMS+MGH+V++LP+STFR+NL +
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSV 481
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/154 (64%), Positives = 127/154 (82%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 150
V G +PGAKYI+RD+G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
KMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH+ Q+ ETRAEV+++ + P+QI
Sbjct: 453 KMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQI 512
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
++PQ NRPVMGIVQD+L AV K TKRD FL + E
Sbjct: 513 VSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDE 546
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD ++FNRQP+LHKMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 432 KVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ Q+ ETRAEV+++ + P+QI++PQ NRPVMGIVQD+L AV K TKRD FL
Sbjct: 492 LVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFL 542
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 67/83 (80%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G +PGAKYI+RD+G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMS+MGHR ++LP+STFR+NL +
Sbjct: 453 KMSIMGHRAKILPYSTFRLNLSV 475
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 129/157 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV RG + +PGAK I+RD+ IDLRF + D+ L+ G++VERH++D DLVIFNR
Sbjct: 412 KMRELVMRGPTSWPGAKRIIRDDNSCIDLRFTKQAQDIVLRYGWRVERHMQDNDLVIFNR 471
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR ++LP+STFR+NLS TSPYNADFDGDEMN+H+ QS ETRAE+ NI +
Sbjct: 472 QPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMHLAQSHETRAEIRNIMM 531
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQ+++PQ NRPVMGIVQD+L A +TKRD F++K
Sbjct: 532 VPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEK 568
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++D DLVIFNRQP+LHKMSMMGHR ++LP+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 456 RVERHMQDNDLVIFNRQPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMH 515
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+ QS ETRAE+ NI + PRQ+++PQ NRPVMGIVQD+L A +TKRD F++
Sbjct: 516 LAQSHETRAEIRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIE 567
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV RG + +PGAK I+RD+ IDLRF + D+ L+ G++VERH++D DLVIFNRQ
Sbjct: 413 MRELVMRGPTSWPGAKRIIRDDNSCIDLRFTKQAQDIVLRYGWRVERHMQDNDLVIFNRQ 472
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR ++LP+STFR+NL +
Sbjct: 473 PSLHKMSMMGHRAKILPFSTFRLNLSV 499
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 128/154 (83%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETRAE++++ P+
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPK 516
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QI++PQ N+PVMGIVQD+L AV K T+RD FL K
Sbjct: 517 QIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTK 550
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+RDGD V+FNRQP+LHKMS+MGH+V++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 438 RVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 497
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETRAE++++ P+QI++PQ N+PVMGIVQD+L AV K T+RD FL
Sbjct: 498 LAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFL 548
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 70/85 (82%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+ G +PGAKY++RD+G R DLR K ++ L+ GY+VERH+RDGD V+FNRQP+
Sbjct: 397 QLVKTGPFDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPS 456
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMS+MGH+V++LP+STFR+NL +
Sbjct: 457 LHKMSIMGHQVKILPYSTFRLNLSV 481
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica
T-34]
Length = 1947
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 127/155 (81%), Gaps = 1/155 (0%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD ++FNRQ
Sbjct: 565 LSELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYILFNRQ 623
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 624 PSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWV 683
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 684 PRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 718
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD ++FNRQP+LHKMSMM HR++++ +STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 608 VERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 667
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQI++PQ N+PVMGIVQDTL +RK + RD LD
Sbjct: 668 PQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLLD 718
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G + YPGAKY++RD GERIDL+++ + SD+ LQ G+ VERH++DGD ++FNRQ
Sbjct: 565 LSELVRNGPNDYPGAKYVIRDTGERIDLKYNRR-SDMALQPGWIVERHLKDGDYILFNRQ 623
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HR++++ +STFR+NL +
Sbjct: 624 PSLHKMSMMSHRIKLMDYSTFRLNLSV 650
>gi|443906356|dbj|BAM76816.1| RNA polymerase II largest subunit, partial [Metacordyceps
brittlebankisoides]
Length = 845
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 225 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 284
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 285 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 344
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 345 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 381
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 269 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 328
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 329 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 380
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 226 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 285
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 286 PSLHKESMMGHRVRVMPYSTFRLNLSV 312
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY+VR +G RIDLR H + + L+ G+KVERHI DGD ++FNR
Sbjct: 400 KLHQLVENGPNEHPGAKYVVRSDGSRIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE+ N+ +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIMNLCM 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RD F+ K
Sbjct: 520 VPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDCFVTK 556
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD ++FNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHIVDGDFIVFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAE+ N+ + P I++PQ N P+MGIVQDTL V KM +RD F+
Sbjct: 504 VPQTEETRAEIMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDCFV 554
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY+VR +G RIDLR H + + L+ G+KVERHI DGD ++FNRQ
Sbjct: 401 LHQLVENGPNEHPGAKYVVRSDGSRIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 132/168 (78%), Gaps = 5/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ +LVR G ++YPGA+Y++RD GERIDL+++ + D+ LQ G+ VER
Sbjct: 186 RVTPYNRAYLS----DLVRNGPNEYPGARYVIRDTGERIDLKYNRR-GDIALQAGWIVER 240
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RDGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS T PYNADFDGDEMNLHVPQS
Sbjct: 241 HLRDGDYVLFNRQPSLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQS 300
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
E RAE+ I PRQI++PQ N+PVMGIVQDTL VRK T RD +D
Sbjct: 301 EEARAELAQIAWVPRQIVSPQANKPVMGIVQDTLCGVRKFTLRDCLMD 348
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RDGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS T PYNADFDGDEMNLHV
Sbjct: 238 VERHLRDGDYVLFNRQPSLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHV 297
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE+ I PRQI++PQ N+PVMGIVQDTL VRK T RD +D
Sbjct: 298 PQSEEARAELAQIAWVPRQIVSPQANKPVMGIVQDTLCGVRKFTLRDCLMD 348
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G ++YPGA+Y++RD GERIDL+++ + D+ LQ G+ VERH+RDGD V+FNRQ
Sbjct: 195 LSDLVRNGPNEYPGARYVIRDTGERIDLKYNRR-GDIALQAGWIVERHLRDGDYVLFNRQ 253
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+++ +STFR+NL +
Sbjct: 254 PSLHKMSMMAHRVKLMDYSTFRLNLSV 280
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 220 bits (561), Expect = 8e-55, Method: Composition-based stats.
Identities = 104/168 (61%), Positives = 127/168 (75%), Gaps = 4/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + +L+ G + YPGA+Y V+D GERIDL++ + LQ G+ VER
Sbjct: 385 RVTPYNINYLQ----QLINNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVER 440
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+V+ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 441 HLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 500
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL VRK T RD F D
Sbjct: 501 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCD 548
Score = 181 bits (460), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/111 (74%), Positives = 94/111 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+V+ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 438 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL VRK T RD F D
Sbjct: 498 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCD 548
Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 65/83 (78%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+L+ G + YPGA+Y V+D GERIDL++ + LQ G+ VERH++DGD V+FNRQP+
Sbjct: 396 QLINNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+V+ +STFR+NL
Sbjct: 456 LHKMSMMSHRVKVMNYSTFRLNL 478
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 380 RTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGARLDLKHNKNLDDLRLQYGWK 439
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 440 VERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 499
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD F+
Sbjct: 500 PQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFI 549
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD F+
Sbjct: 499 VPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFI 549
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQP+L
Sbjct: 399 LVRNGPNQHPGANYVIKADGARLDLKHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSL 458
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRV+V+P+STFR+NL +
Sbjct: 459 HKESMMGHRVKVMPYSTFRLNLSV 482
>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
Length = 993
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 129/168 (76%), Gaps = 11/168 (6%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNR 362
Query: 146 QPTLHKMSMMGH-----------RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
QP+LHK SMMGH RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 363 QPSLHKESMMGHKGXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 422
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 423 ETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 470
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 94/122 (77%), Gaps = 11/122 (9%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGH-----------RVRVLPWSTFRMNLSCTSPYN 290
KVERHI DGD +IFNRQP+LHK SMMGH RVRV+P+STFR+NLS TSPYN
Sbjct: 347 KVERHIVDGDYIIFNRQPSLHKESMMGHKGXHKESMMGHRVRVMPYSTFRLNLSVTSPYN 406
Query: 291 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 350
ADFDGDEMNLHVPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDV
Sbjct: 407 ADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDV 466
Query: 351 FL 352
FL
Sbjct: 467 FL 468
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 11/98 (11%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQ 363
Query: 61 PTL-----------HKMSMMGHRVRVLPWSTFRMNLRM 87
P+L HK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 PSLHKESMMGHKGXHKESMMGHRVRVMPYSTFRLNLSV 401
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 RLHQLVQNGPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 521 VPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLSK 557
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 555
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVQNGPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 220 bits (560), Expect = 9e-55, Method: Composition-based stats.
Identities = 104/168 (61%), Positives = 127/168 (75%), Gaps = 4/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + +L+ G + YPGA+Y V+D GERIDL++ + LQ G+ VER
Sbjct: 385 RVTPYNINYLQ----QLINNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVER 440
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+V+ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 441 HLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 500
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL VRK T RD F D
Sbjct: 501 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCD 548
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/111 (74%), Positives = 94/111 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+V+ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 438 VERHLKDGDYVLFNRQPSLHKMSMMSHRVKVMNYSTFRLNLSVTSPYNADFDGDEMNLHV 497
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL VRK T RD F D
Sbjct: 498 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCD 548
Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 65/83 (78%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+L+ G + YPGA+Y V+D GERIDL++ + LQ G+ VERH++DGD V+FNRQP+
Sbjct: 396 QLINNGPATYPGARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+V+ +STFR+NL
Sbjct: 456 LHKMSMMSHRVKVMNYSTFRLNL 478
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 380 RTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGARLDLKHNKNLDDLRLQYGWK 439
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 440 VERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 499
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD F+
Sbjct: 500 PQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFI 549
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 439 KVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD F+
Sbjct: 499 VPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFI 549
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQP+L
Sbjct: 399 LVRNGPNQHPGANYVIKADGARLDLKHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSL 458
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRV+V+P+STFR+NL +
Sbjct: 459 HKESMMGHRVKVMPYSTFRLNLSV 482
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 518 RTLTYPEVVTKFNISKLTALVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWK 577
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 578 VERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 637
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD FL
Sbjct: 638 PQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFL 687
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 577 KVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 636
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+N+ + P+QI++PQ N+P+MGIVQDTL V KM++RD FL
Sbjct: 637 VPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFL 687
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQ
Sbjct: 534 LTALVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQ 593
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 594 PSLHKESMMGHRVKVMPYSTFRLNLSV 620
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/161 (62%), Positives = 130/161 (80%), Gaps = 4/161 (2%)
Query: 88 FELVRR----GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIF 143
FE +RR G +PGAKYI+RD+G + DLR K S+L L+ GYKVERH++DGD ++F
Sbjct: 386 FESLRRRVEVGPHDWPGAKYIIRDDGTKFDLRHVKKASELQLEYGYKVERHMQDGDYILF 445
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHKMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH+ Q+ ETRAEV+++
Sbjct: 446 NRQPSLHKMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHL 505
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ P+QI++PQ NRPVMGIVQD+L + K TKRD FL K E
Sbjct: 506 MLVPKQIVSPQGNRPVMGIVQDSLLGISKFTKRDCFLTKDE 546
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD ++FNRQP+LHKMS+MGHR ++LP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 432 KVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTFRLNLSVTTPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ Q+ ETRAEV+++ + P+QI++PQ NRPVMGIVQD+L + K TKRD FL
Sbjct: 492 LVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLGISKFTKRDCFL 542
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 2 FELVRR----GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIF 57
FE +RR G +PGAKYI+RD+G + DLR K S+L L+ GYKVERH++DGD ++F
Sbjct: 386 FESLRRRVEVGPHDWPGAKYIIRDDGTKFDLRHVKKASELQLEYGYKVERHMQDGDYILF 445
Query: 58 NRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
NRQP+LHKMS+MGHR ++LP+STFR+NL +
Sbjct: 446 NRQPSLHKMSIMGHRAKILPYSTFRLNLSV 475
>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
Length = 983
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD + FNR
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIXFNR 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
Q HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 363 QXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 423 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 459
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 90/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD + FNRQ HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDYIXFNRQXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 407 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 457
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD + FNRQ
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIXFNRQ 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 XXXHKESMMGHRVRVMPYSTFRLNLSV 390
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 555
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KV RHI DGD +IFNR
Sbjct: 231 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVXRHIVDGDYIIFNR 290
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
Q HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 291 QLXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 350
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 351 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 387
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 90/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KV RHI DGD +IFNRQ HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 275 KVXRHIVDGDYIIFNRQLXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 334
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 335 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 385
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KV RHI DGD +IFNRQ
Sbjct: 232 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVXRHIVDGDYIIFNRQ 291
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 292 LXXHKESMMGHRVRVMPYSTFRLNLSV 318
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus
heterostrophus C5]
Length = 1737
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 381 RTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWK 440
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 441 VERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 500
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KMT+RD F+
Sbjct: 501 PQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFI 550
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 440 KVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KMT+RD F+
Sbjct: 500 VPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFI 550
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQP+L
Sbjct: 400 LVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSL 459
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRV+V+P+STFR+NL +
Sbjct: 460 HKESMMGHRVKVMPYSTFRLNLSV 483
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus
ND90Pr]
Length = 1737
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+K
Sbjct: 381 RTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWK 440
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 441 VERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 500
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KMT+RD F+
Sbjct: 501 PQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFI 550
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D++IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 440 KVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++N+ + P+QI++PQ N+P+MGIVQDTL V KMT+RD F+
Sbjct: 500 VPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFI 550
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +Q+PGA Y+++ +G R+DL+ + DL LQ G+KVERHI D D++IFNRQP+L
Sbjct: 400 LVRNGPNQHPGANYVIKADGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSL 459
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRV+V+P+STFR+NL +
Sbjct: 460 HKESMMGHRVKVMPYSTFRLNLSV 483
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ V+ G +++PGAKY++R +G RIDLR H + L L+ G+K
Sbjct: 384 RTLTFPETVTPYNIEKLTGYVKNGPNEHPGAKYVIRSDGTRIDLRHHKRAGALQLEYGWK 443
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 444 VERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 503
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V K+T+RD FL K
Sbjct: 504 PQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDTFLTK 555
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V K+T+RD FL
Sbjct: 503 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLTRRDTFL 553
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 68/83 (81%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V+ G +++PGAKY++R +G RIDLR H + L L+ G+KVERH+ DGD +IFNRQP+LH
Sbjct: 404 VKNGPNEHPGAKYVIRSDGTRIDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLH 463
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
K SMMGHRVRV+P+STFR+NL +
Sbjct: 464 KESMMGHRVRVMPYSTFRLNLSV 486
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 128/158 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E+V RG ++PGAKY++R +G R+DLR +LQ G+ VERH+ D D++IFNR
Sbjct: 308 RLQEMVHRGAEEHPGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLSDNDVIIFNR 367
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+E RAE++ + +
Sbjct: 368 QPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCM 427
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
P QI++PQ+N+PVMGIVQDTL + K T+RD F+DK
Sbjct: 428 VPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKA 465
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 98/111 (88%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D++IFNRQP+LHKMSMMGH+V+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 353 VERHLSDNDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 412
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+E RAE++ + + P QI++PQ+N+PVMGIVQDTL + K T+RD F+D
Sbjct: 413 PQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMD 463
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E+V RG ++PGAKY++R +G R+DLR +LQ G+ VERH+ D D++IFNRQP+
Sbjct: 311 EMVHRGAEEHPGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLSDNDVIIFNRQPS 370
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+V+V+P+STFR+NL +
Sbjct: 371 LHKMSMMGHKVKVMPYSTFRLNLSV 395
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 131/171 (76%), Gaps = 1/171 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P N+ ++ ELVR G +++PGAK+I+R++G RIDLR+H + ++ LQ G+
Sbjct: 385 RILTFPERVTLYNIHKLQELVRNGPNEHPGAKHIIREDGSRIDLRYHKRAGEIQLQLGWI 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 445 VERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PQ ETRAEV N+ P I++PQ N P+MGIVQDT+ + MT+RD +D
Sbjct: 505 PQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIWMMTRRDTMMD 555
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMN+HV
Sbjct: 445 VERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNMHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ ETRAEV N+ P I++PQ N P+MGIVQDT+ + MT+RD +D
Sbjct: 505 PQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIWMMTRRDTMMD 555
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 72/85 (84%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAK+I+R++G RIDLR+H + ++ LQ G+ VERHI DGD +IFNRQP+
Sbjct: 403 ELVRNGPNEHPGAKHIIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPS 462
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 463 LHKESMMGHRVKVMPYSTFRLNLSV 487
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 133/172 (77%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ R+ + V+ G +++PGA+++VR +G RIDLR H + S + L+ G+K
Sbjct: 387 RTLTYPETVTPFNIERLTQYVQNGPNEHPGARFVVRSDGTRIDLRHHRRASSIQLEYGWK 446
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD VIFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 447 VERHLIDGDYVIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 506
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 507 PQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFLTK 558
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD VIFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 446 KVERHLIDGDYVIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 506 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFL 556
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGA+++VR +G RIDLR H + S + L+ G+KVERH+ DGD VIFNRQ
Sbjct: 403 LTQYVQNGPNEHPGARFVVRSDGTRIDLRHHRRASSIQLEYGWKVERHLIDGDYVIFNRQ 462
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 463 PSLHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 219 bits (558), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/174 (55%), Positives = 135/174 (77%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P N+ ++ +LV RG +PGA Y++RD+G++IDLRFH ++HLQCGY
Sbjct: 361 RMLTFPERVTEYNIDKLTQLVHRGPYNHPGANYVIRDDGQKIDLRFHK--GEVHLQCGYV 418
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ +GD V+FNRQP+LHKMSMM HR RV+ +STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 419 VERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSVTAPYNADFDGDEMNLHL 478
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS+ +AE++ + + + I++PQ+N+PVMGIVQDTL V K+T+RD+FL + +
Sbjct: 479 PQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTRSQ 532
Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/110 (64%), Positives = 94/110 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD V+FNRQP+LHKMSMM HR RV+ +STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 419 VERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSVTAPYNADFDGDEMNLHL 478
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS+ +AE++ + + + I++PQ+N+PVMGIVQDTL V K+T+RD+FL
Sbjct: 479 PQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFL 528
Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/83 (62%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG +PGA Y++RD+G++IDLRFH ++HLQCGY VERH+ +GD V+FNRQP+
Sbjct: 379 QLVHRGPYNHPGANYVIRDDGQKIDLRFHK--GEVHLQCGYVVERHLSNGDTVLFNRQPS 436
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HR RV+ +STFR+NL
Sbjct: 437 LHKMSMMAHRARVMKYSTFRLNL 459
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 219 bits (558), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/174 (55%), Positives = 135/174 (77%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P N+ ++ +LV RG +PGA Y++RD+G++IDLRFH ++HLQCGY
Sbjct: 361 RMLTFPERVTEYNIDKLTQLVHRGPYNHPGANYVIRDDGQKIDLRFHK--GEVHLQCGYV 418
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ +GD V+FNRQP+LHKMSMM HR RV+ +STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 419 VERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSVTAPYNADFDGDEMNLHL 478
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS+ +AE++ + + + I++PQ+N+PVMGIVQDTL V K+T+RD+FL + +
Sbjct: 479 PQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTRSQ 532
Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/110 (64%), Positives = 94/110 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD V+FNRQP+LHKMSMM HR RV+ +STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 419 VERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSVTAPYNADFDGDEMNLHL 478
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS+ +AE++ + + + I++PQ+N+PVMGIVQDTL V K+T+RD+FL
Sbjct: 479 PQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFL 528
Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/83 (62%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG +PGA Y++RD+G++IDLRFH ++HLQCGY VERH+ +GD V+FNRQP+
Sbjct: 379 QLVHRGPYNHPGANYVIRDDGQKIDLRFHK--GEVHLQCGYVVERHLSNGDTVLFNRQPS 436
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HR RV+ +STFR+NL
Sbjct: 437 LHKMSMMAHRARVMKYSTFRLNL 459
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDK 555
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFID 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDK 555
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFID 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 401 KLQQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E+RAE++ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLAL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 521 VPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 557
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 103/124 (83%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS TSP
Sbjct: 432 AKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSP 491
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE++ + + P+ I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 492 YNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRR 551
Query: 349 DVFL 352
DVFL
Sbjct: 552 DVFL 555
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 404 QLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPS 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 464 LHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 400 RLHELVQNGPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 520 VPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTK 556
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 504 VPQSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 554
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 401 LHELVQNGPNEHPGAKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 461 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 557
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 505 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 556
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVKVMPYSTFRLNLSV 488
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDK 555
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFID 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 400 RLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 520 VPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLSK 556
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 504 VPQSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 554
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 401 LHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 127/154 (82%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 150
V G +PGAKYI+R++G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VEVGPHDWPGAKYIIREDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
KMS+MGH+ ++LP+STFR+NLS T+PYNADFDGDEMNLH+ QS ETRAEV+++ + P+QI
Sbjct: 453 KMSIMGHKAKILPYSTFRLNLSVTTPYNADFDGDEMNLHLVQSHETRAEVKHLMLVPKQI 512
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
++PQ NRPVMGIVQD+L AV K TKRD FL + E
Sbjct: 513 VSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDE 546
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 99/111 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD ++FNRQP+LHKMS+MGH+ ++LP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 432 KVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTTPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETRAEV+++ + P+QI++PQ NRPVMGIVQD+L AV K TKRD FL
Sbjct: 492 LVQSHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFL 542
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G +PGAKYI+R++G R DLR K S+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 393 VEVGPHDWPGAKYIIREDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLH 452
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMS+MGH+ ++LP+STFR+NL +
Sbjct: 453 KMSIMGHKAKILPYSTFRLNLSV 475
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDK 555
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFID 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|397135975|gb|AFO11482.1| RNA polymerase I, partial [Saitoella complicata]
Length = 645
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 134/169 (79%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ ++ ELVR G +++PGAK+++R++G+R+DLRF+ + L G VER
Sbjct: 190 RVTPYNIKKLT----ELVRNGPTEHPGAKFVIRESGDRMDLRFNKTAGSIALHYGDIVER 245
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
HI DGD+V+FNRQP+LHKMSMM H+++V+P+STFR+NLS T+PYNADFDGDEMN+HVPQS
Sbjct: 246 HINDGDVVLFNRQPSLHKMSMMCHKIKVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQS 305
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE+ I PRQI++PQ+N+PVMGIVQDTL VRK+T RD L K
Sbjct: 306 EETRAELGGICWVPRQIVSPQSNKPVMGIVQDTLCGVRKLTLRDEMLSK 354
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/114 (70%), Positives = 98/114 (85%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
+ D VERHI DGD+V+FNRQP+LHKMSMM H+++V+P+STFR+NLS T+PYNADFDGDEM
Sbjct: 239 YGDIVERHINDGDVVLFNRQPSLHKMSMMCHKIKVMPYSTFRLNLSVTTPYNADFDGDEM 298
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
N+HVPQS ETRAE+ I PRQI++PQ+N+PVMGIVQDTL VRK+T RD L
Sbjct: 299 NMHVPQSEETRAELGGICWVPRQIVSPQSNKPVMGIVQDTLCGVRKLTLRDEML 352
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +++PGAK+++R++G+R+DLRF+ + L G VERHI DGD+V+FNRQ
Sbjct: 199 LTELVRNGPTEHPGAKFVIRESGDRMDLRFNKTAGSIALHYGDIVERHINDGDVVLFNRQ 258
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H+++V+P+STFR+NL +
Sbjct: 259 PSLHKMSMMCHKIKVMPYSTFRLNLSV 285
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/159 (63%), Positives = 129/159 (81%), Gaps = 2/159 (1%)
Query: 84 NLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIF 143
NLR + V G ++PGAKYIVR +G R DLR + SDL L+ GY+VERH++DGD ++F
Sbjct: 388 NLR--KKVEMGPHEWPGAKYIVRADGSRFDLRHVKRASDLQLEYGYRVERHLQDGDYILF 445
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHKMS+MGHR +VLP+STFR+NLS TSPYNADFDGDEMNLH+ Q+ ETRAEV+++
Sbjct: 446 NRQPSLHKMSIMGHRCKVLPYSTFRLNLSVTSPYNADFDGDEMNLHLAQTHETRAEVKHL 505
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P+QI++PQ NRPVMGIVQD+L + K T+RD FL K
Sbjct: 506 MLVPKQIVSPQGNRPVMGIVQDSLLGISKFTRRDCFLTK 544
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD ++FNRQP+LHKMS+MGHR +VLP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 432 RVERHLQDGDYILFNRQPSLHKMSIMGHRCKVLPYSTFRLNLSVTSPYNADFDGDEMNLH 491
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ Q+ ETRAEV+++ + P+QI++PQ NRPVMGIVQD+L + K T+RD FL
Sbjct: 492 LAQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLGISKFTRRDCFL 542
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 67/83 (80%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G ++PGAKYIVR +G R DLR + SDL L+ GY+VERH++DGD ++FNRQP+LH
Sbjct: 393 VEMGPHEWPGAKYIVRADGSRFDLRHVKRASDLQLEYGYRVERHLQDGDYILFNRQPSLH 452
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMS+MGHR +VLP+STFR+NL +
Sbjct: 453 KMSIMGHRCKVLPYSTFRLNLSV 475
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG+VQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDK 555
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MG+VQD+L K+ +RD F+D
Sbjct: 503 VPQSEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVD 554
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 555
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 554
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGH+VRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHQVRVMPYSTFRLNLSV 486
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFVDK 555
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFVD 554
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 RLHHLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDK 555
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFID 554
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 69/84 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQP+L
Sbjct: 403 LVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSL 462
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 463 HKESMMGHRVRVMPYSTFRLNLSV 486
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 RLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L KM +RD F++K
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGAYKMCRRDTFIEK 557
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L KM +RD F++
Sbjct: 505 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKMCRRDTFIE 556
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGH+VRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHQVRVMPYSTFRLNLSV 488
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 127/156 (81%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ +LVR G + +PGAKY++R +G RIDLR + + ++L+ G+KVERHI DGD +IFNRQ
Sbjct: 399 LSKLVRNGPNDHPGAKYVMRADGTRIDLRHNKNSAGVNLEYGWKVERHIVDGDFIIFNRQ 458
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV N+ +
Sbjct: 459 PSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVMNLCMV 518
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVF+ K
Sbjct: 519 PLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFITK 554
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 442 KVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV N+ + P I++PQ N P+MGIVQDTL V KM +RDVF+
Sbjct: 502 VPQTEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKMCRRDVFI 552
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G + +PGAKY++R +G RIDLR + + ++L+ G+KVERHI DGD +IFNRQ
Sbjct: 399 LSKLVRNGPNDHPGAKYVMRADGTRIDLRHNKNSAGVNLEYGWKVERHIVDGDFIIFNRQ 458
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 459 PSLHKESMMGHRVRVMPYSTFRLNLSV 485
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/159 (62%), Positives = 127/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 400 KLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE++ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCM 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL K+ +RDVFL K E
Sbjct: 520 VPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEE 558
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 504 VPQSEETRAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 554
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 401 LHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/159 (62%), Positives = 127/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 400 KLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE++ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCM 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL K+ +RDVFL K E
Sbjct: 520 VPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEE 558
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 504 VPQSEETRAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 554
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 401 LHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|123979336|gb|ABM81493.1| RNA polymerase II largest subunit [Buellia dialyta]
Length = 994
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 132/169 (78%), Gaps = 10/169 (5%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+Y++RD+GERIDLR+H + +L LQ G+KVERHI DGD +IFNR
Sbjct: 302 KLHQLVKNGPNEHPGARYVIRDSGERIDLRYHKRAGELSLQYGWKVERHIVDGDYIIFNR 361
Query: 146 QPTLHKMSMMGH----------RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
QP+LHK SMMG RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E
Sbjct: 362 QPSLHKESMMGQGXTRNLXWVXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 421
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
TRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL++ +
Sbjct: 422 TRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQYQ 470
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 94/122 (77%), Gaps = 10/122 (8%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGH----------RVRVLPWSTFRMNLSCTSPYNA 291
KVERHI DGD +IFNRQP+LHK SMMG RVRV+P+STFR+NLS TSPYNA
Sbjct: 346 KVERHIVDGDYIIFNRQPSLHKESMMGQGXTRNLXWVXRVRVMPYSTFRLNLSVTSPYNA 405
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVF
Sbjct: 406 DFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 465
Query: 352 LD 353
L+
Sbjct: 466 LN 467
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 74/97 (76%), Gaps = 10/97 (10%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+Y++RD+GERIDLR+H + +L LQ G+KVERHI DGD +IFNRQ
Sbjct: 303 LHQLVKNGPNEHPGARYVIRDSGERIDLRYHKRAGELSLQYGWKVERHIVDGDYIIFNRQ 362
Query: 61 PTLHKMSMMGH----------RVRVLPWSTFRMNLRM 87
P+LHK SMMG RVRV+P+STFR+NL +
Sbjct: 363 PSLHKESMMGQGXTRNLXWVXRVRVMPYSTFRLNLSV 399
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 RLHQLVENGPNEHPGAKYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDK 555
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 93/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 503 VPQTEETRAEVRELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFID 554
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V G +++PGAKY++R +G+RIDLR H + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 RLHQYVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLIDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD FL K
Sbjct: 519 VPLNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFLTK 555
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L V K+ +RD FL
Sbjct: 503 VPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFL 553
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAKY++R +G+RIDLR H + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQYVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLIDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 218 bits (554), Expect = 5e-54, Method: Composition-based stats.
Identities = 99/174 (56%), Positives = 134/174 (77%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P + N+ R+ LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 343 KIHTFPETITPYNIERLTRLVSNGPNEYPGANYVIRSDGQRIDLNFNR--GDIKLEEGYI 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD+V+FNRQP+LHKMSMMGH VRV+ TFR+NLSCTSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS T+AE+E + + +Q+++PQ+NRPVMGIVQD+LT++R T RD F DK E
Sbjct: 461 PQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTFFDKRE 514
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 19/173 (10%)
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLT-------AVRKMTKR--------DVFLDK- 242
E+ IH P + ITP N + +V + +R +R D+ L++
Sbjct: 340 EIAKIHTFP-ETITPYNIERLTRLVSNGPNEYPGANYVIRSDGQRIDLNFNRGDIKLEEG 398
Query: 243 --VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
VERH+++GD+V+FNRQP+LHKMSMMGH VRV+ TFR+NLSCTSPYNADFDGDEMNL
Sbjct: 399 YIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNADFDGDEMNL 458
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQS T+AE+E + + +Q+++PQ+NRPVMGIVQD+LT++R T RD F D
Sbjct: 459 HMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTFFD 511
Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/82 (58%), Positives = 65/82 (79%), Gaps = 2/82 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD+V+FNRQP+L
Sbjct: 362 LVSNGPNEYPGANYVIRSDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDVVLFNRQPSL 419
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGH VRV+ TFR+NL
Sbjct: 420 HKMSMMGHFVRVMEGKTFRLNL 441
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 130/159 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGA+++VR +G R+DLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLTKLVQNGPNEHPGARFVVRSDGTRLDLRHHRRATGIQLEYGWKVERHLMDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL V K+ +RDVFL K E
Sbjct: 521 VPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFLTKEE 559
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFL 555
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGA+++VR +G R+DLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LTKLVQNGPNEHPGARFVVRSDGTRLDLRHHRRATGIQLEYGWKVERHLMDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative
[Plasmodium vivax]
Length = 2379
Score = 217 bits (553), Expect = 6e-54, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 425 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQPS 484
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ + +
Sbjct: 485 LHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQK 544
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 545 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 580
Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK ++R++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 450 LRHVRKNSERELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 509
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 510 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKF 569
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 570 TRRDNFL 576
Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 425 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQPS 484
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 485 LHKMSIMGHKAKILPYSTFRLNL 507
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 126/156 (80%), Gaps = 2/156 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGA+Y++R GERIDLR +D+ LQ G+KVERHI DGD +IFNR
Sbjct: 405 KLQELVRNGPNEHPGARYVIRGEGERIDLRR--AKNDVQLQYGWKVERHIVDGDYIIFNR 462
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV +
Sbjct: 463 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELCA 522
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P+ I++PQ N P+MGIVQDT+ + MT+RDV +D
Sbjct: 523 VPKNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVMID 558
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 234 TKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYN 290
K DV L KVERHI DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYN
Sbjct: 436 AKNDVQLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYN 495
Query: 291 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 350
ADFDGDEMNLHVPQS ETRAEV + P+ I++PQ N P+MGIVQDT+ + MT+RDV
Sbjct: 496 ADFDGDEMNLHVPQSHETRAEVSELCAVPKNIVSPQKNGPLMGIVQDTMAGIYMMTRRDV 555
Query: 351 FLD 353
+D
Sbjct: 556 MID 558
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGA+Y++R GERIDLR +D+ LQ G+KVERHI DGD +IFNRQP+
Sbjct: 408 ELVRNGPNEHPGARYVIRGEGERIDLRR--AKNDVQLQYGWKVERHIVDGDYIIFNRQPS 465
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 466 LHKESMMGHRVKVMPYSTFRLNLSV 490
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/182 (58%), Positives = 133/182 (73%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNLRMFELVRRGNSQY---------------PGAKYIVRDNGERIDLRFHPKP 120
+PWS +NL E V N ++ GAKYI+R++G+R+DLRF K
Sbjct: 297 VPWS-IALNLTYPETVTPHNYKWLQQLVENGPHPPAGQTGAKYIIREDGQRLDLRFLRKD 355
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH+ +GD V+FNRQP+LHKMSMMGH+VR+LP+STFR+NLS TSPYNAD
Sbjct: 356 SDRHLEFGYKVERHLVNGDYVLFNRQPSLHKMSMMGHKVRILPYSTFRLNLSVTSPYNAD 415
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQ+ ETR E I + PR I++PQ N+PV+GIVQDTL R MTKRD F+
Sbjct: 416 FDGDEMNMHVPQTPETRTETREIMMVPRNIVSPQANKPVIGIVQDTLLGCRLMTKRDTFI 475
Query: 241 DK 242
+K
Sbjct: 476 EK 477
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 102/125 (81%), Gaps = 1/125 (0%)
Query: 230 VRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
+RK + R + F KVERH+ +GD V+FNRQP+LHKMSMMGH+VR+LP+STFR+NLS TSP
Sbjct: 352 LRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLHKMSMMGHKVRILPYSTFRLNLSVTSP 411
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMN+HVPQ+ ETR E I + PR I++PQ N+PV+GIVQDTL R MTKR
Sbjct: 412 YNADFDGDEMNMHVPQTPETRTETREIMMVPRNIVSPQANKPVIGIVQDTLLGCRLMTKR 471
Query: 349 DVFLD 353
D F++
Sbjct: 472 DTFIE 476
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+R++G+R+DLRF K SD HL+ GYKVERH+ +GD V+FNRQP+LHKMSMMGH+V
Sbjct: 335 GAKYIIREDGQRLDLRFLRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLHKMSMMGHKV 394
Query: 74 RVLPWSTFRMNLRM 87
R+LP+STFR+NL +
Sbjct: 395 RILPYSTFRLNLSV 408
>gi|397135830|gb|AFO11410.1| RNA polymerase I, partial [Zygotorulaspora mrakii]
Length = 871
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 125/155 (80%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ L +KVERHI D D +FN Q
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYXXRAGDIXLXYXWKVERHIXDNDPXLFNXQ 260
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAV 320
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 321 PLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 355
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 93/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D +FN QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 244 KVERHIXDNDPXLFNXQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 304 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIE 355
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ L +KVERHI D D +FN Q
Sbjct: 201 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYXXRAGDIXLXYXWKVERHIXDNDPXLFNXQ 260
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 261 PSLHKMSMMAHRVKVMPYSTFRLNLSV 287
>gi|380488223|emb|CCF37524.1| DNA-directed RNA polymerase II subunit RPB1, partial
[Colletotrichum higginsianum]
Length = 565
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 400 RLHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL+K
Sbjct: 520 VPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLNK 556
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL+
Sbjct: 504 VPQSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLN 555
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 69/85 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+ G +++PGAKY++R +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 401 LHELVQNGPNEHPGAKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHK SMMGHRVRV+P+STFR+NL
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNL 485
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 4/170 (2%)
Query: 73 VRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVE 132
RV P++ ++ LV G +++PGAK+I+R +G RIDLR+ SDL L G+ VE
Sbjct: 389 TRVTPFNIHELS----ALVANGPTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVE 444
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LHKMS+MGH+ +VL WSTFR+NLSCTSPYNADFDGDEMNLHVPQ
Sbjct: 445 RHLNDGDIVLFNRQPSLHKMSIMGHQAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQ 504
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S+ RAE E + +P+ I++ Q+NRPVMGI+QD+L V+KMTKRD+F+ K
Sbjct: 505 SLPARAEAELMMHSPKVIVSGQSNRPVMGIIQDSLLGVQKMTKRDIFIKK 554
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 101/121 (83%), Gaps = 3/121 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K D+ L VERH+ DGD+V+FNRQP+LHKMS+MGH+ +VL WSTFR+NLSCTSPYNA
Sbjct: 432 KSDLLLANGWIVERHLNDGDIVLFNRQPSLHKMSIMGHQAKVLDWSTFRLNLSCTSPYNA 491
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQS+ RAE E + +P+ I++ Q+NRPVMGI+QD+L V+KMTKRD+F
Sbjct: 492 DFDGDEMNLHVPQSLPARAEAELMMHSPKVIVSGQSNRPVMGIIQDSLLGVQKMTKRDIF 551
Query: 352 L 352
+
Sbjct: 552 I 552
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ LV G +++PGAK+I+R +G RIDLR+ SDL L G+ VERH+ DGD+V+FNRQ
Sbjct: 399 LSALVANGPTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLNDGDIVLFNRQ 458
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGH+ +VL WSTFR+NL
Sbjct: 459 PSLHKMSIMGHQAKVLDWSTFRLNL 483
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 461 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 521 VPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDK 557
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 505 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFID 556
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVKVMPYSTFRLNLSV 488
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 217 bits (552), Expect = 7e-54, Method: Composition-based stats.
Identities = 100/156 (64%), Positives = 126/156 (80%), Gaps = 2/156 (1%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV RG ++PGA+YIVR +G R+DLRF + L LQ GY VERH+RD D++IFNRQ
Sbjct: 424 MAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQ 483
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGHRV+VL WSTFRMNLS TSPYNADFDGDEMNLHVPQS+ +AE + + +
Sbjct: 484 PSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQSLVAKAEAQELMMV 543
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I++PQ+N+PVMGI D+L V KMTKRD F+++
Sbjct: 544 PRNIVSPQSNKPVMGI--DSLLGVCKMTKRDTFVER 577
Score = 172 bits (437), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/111 (69%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D++IFNRQP+LHKMS+MGHRV+VL WSTFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 468 VERHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHV 527
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ +AE + + + PR I++PQ+N+PVMGI D+L V KMTKRD F++
Sbjct: 528 PQSLVAKAEAQELMMVPRNIVSPQSNKPVMGI--DSLLGVCKMTKRDTFVE 576
Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV RG ++PGA+YIVR +G R+DLRF + L LQ GY VERH+RD D++IFNRQ
Sbjct: 424 MAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQ 483
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGHRV+VL WSTFRMNL
Sbjct: 484 PSLHKMSIMGHRVKVLDWSTFRMNL 508
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFVDK 555
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFVD 554
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGH+VRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHQVRVMPYSTFRLNLSV 486
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G+RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 401 KLHQLVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RDVFL K
Sbjct: 521 VPLNIVSPQKNGPLMGIVQDSLAGAYKLCRRDVFLTK 557
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L K+ +RDVFL
Sbjct: 505 VPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKLCRRDVFL 555
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G+RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 402 LHQLVENGPNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVRVMPYSTFRLNLSV 488
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 127/152 (83%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 150
V +G ++PGAKYIVRD+G R DLR +PS+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 437 VEKGPHEWPGAKYIVRDDGTRYDLRHVRRPSELQLEYGYKVERHMQDGDYILFNRQPSLH 496
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
KMS+MGH+ ++LP+STFR+NLS TSPYNADFDGDEMNLH+ Q+ E R+E++++ ++P+QI
Sbjct: 497 KMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQTHEARSEIKHLMLSPKQI 556
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
++PQ NRPVMGIVQD+L V K T +D FL +
Sbjct: 557 VSPQGNRPVMGIVQDSLLGVSKFTMKDTFLSR 588
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD ++FNRQP+LHKMS+MGH+ ++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 476 KVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLH 535
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ Q+ E R+E++++ ++P+QI++PQ NRPVMGIVQD+L V K T +D FL
Sbjct: 536 LAQTHEARSEIKHLMLSPKQIVSPQGNRPVMGIVQDSLLGVSKFTMKDTFL 586
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 70/83 (84%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V +G ++PGAKYIVRD+G R DLR +PS+L L+ GYKVERH++DGD ++FNRQP+LH
Sbjct: 437 VEKGPHEWPGAKYIVRDDGTRYDLRHVRRPSELQLEYGYKVERHMQDGDYILFNRQPSLH 496
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
KMS+MGH+ ++LP+STFR+NL +
Sbjct: 497 KMSIMGHKAKILPYSTFRLNLSV 519
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 126/168 (75%), Gaps = 4/168 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + LV G S YPGA+Y V+D GERIDL++ + LQ G+ VER
Sbjct: 396 RVTPYNIVYLQT----LVNNGPSTYPGARYYVKDTGERIDLKYRKSGEPISLQFGWIVER 451
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 452 HLKDGDFVLFNRQPSLHKMSMMCHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 511
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD + D
Sbjct: 512 EETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDNYCD 559
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 94/111 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 449 VERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHV 508
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK T RD + D
Sbjct: 509 PQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDNYCD 559
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 65/84 (77%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G S YPGA+Y V+D GERIDL++ + LQ G+ VERH++DGD V+FNRQP+L
Sbjct: 408 LVNNGPSTYPGARYYVKDTGERIDLKYRKSGEPISLQFGWIVERHLKDGDFVLFNRQPSL 467
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRV+++ +STFR+NL +
Sbjct: 468 HKMSMMCHRVKLMNYSTFRLNLSV 491
>gi|389583419|dbj|GAB66154.1| DNA-directed RNA polymerase II largest subunit [Plasmodium
cynomolgi strain B]
Length = 2270
Score = 216 bits (551), Expect = 9e-54, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 425 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQPS 484
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ + +
Sbjct: 485 LHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQK 544
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 545 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 580
Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK ++R++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 450 LRHVRKNSERELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 509
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 510 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKF 569
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 570 TRRDNFL 576
Score = 115 bits (288), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 425 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQPS 484
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 485 LHKMSIMGHKAKILPYSTFRLNL 507
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNR
Sbjct: 403 KLQQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNR 462
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 463 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLAL 522
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD+FL K
Sbjct: 523 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTK 559
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 101/124 (81%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERHI DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 434 AKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 493
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 494 YNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 553
Query: 349 DVFL 352
D+FL
Sbjct: 554 DIFL 557
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNRQP+
Sbjct: 406 QLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPS 465
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 466 LHKESMMGHRVRVMPYSTFRLNLSV 490
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 402 KLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLAL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 522 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 558
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 446 KVERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 506 VPQSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 556
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 405 QLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPS 464
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 LHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNR
Sbjct: 401 KLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLAL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 521 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 557
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 101/124 (81%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERHI DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 432 AKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 491
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 492 YNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 551
Query: 349 DVFL 352
DVFL
Sbjct: 552 DVFL 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNRQP+L
Sbjct: 405 LVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSL 464
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 HKESMMGHRVRVMPYSTFRLNLSV 488
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 2353
Score = 216 bits (551), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/158 (61%), Positives = 129/158 (81%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQ
Sbjct: 423 MKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQ 482
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ +
Sbjct: 483 PSLHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIV 542
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 543 QKQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 580
Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK ++R++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 450 LRHVRKNSERELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 509
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 510 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKF 569
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 570 TRRDNFL 576
Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 68/85 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQ
Sbjct: 423 MKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNRQ 482
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 483 PSLHKMSIMGHKAKILPYSTFRLNL 507
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNR
Sbjct: 401 KLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLAL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 521 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 557
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 101/124 (81%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERHI DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 432 AKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 491
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 492 YNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 551
Query: 349 DVFL 352
DVFL
Sbjct: 552 DVFL 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNRQP+L
Sbjct: 405 LVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSL 464
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 HKESMMGHRVRVMPYSTFRLNLSV 488
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/157 (63%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNR
Sbjct: 401 KLQTLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLAL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 521 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 557
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 101/124 (81%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERHI DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 432 AKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 491
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 492 YNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 551
Query: 349 DVFL 352
DVFL
Sbjct: 552 DVFL 555
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 68/84 (80%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+YIVRDNGERIDLR + L G+KVERHI DGD+++FNRQP+L
Sbjct: 405 LVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSL 464
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 HKESMMGHRVRVMPYSTFRLNLSV 488
>gi|83317456|ref|XP_731168.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2312
Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 426 KLVERGPYEWPGAKYIIRDNGSKYDLRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPS 485
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ + +
Sbjct: 486 LHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQK 545
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 546 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 581
Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/127 (59%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 451 LRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 510
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 511 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKF 570
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 571 TRRDNFL 577
Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 426 KLVERGPYEWPGAKYIIRDNGSKYDLRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPS 485
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 486 LHKMSIMGHKAKILPYSTFRLNL 508
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 126/158 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V RG ++PGAKY++R +G R+DLR LQ G+ VERH+ D D++IFNR
Sbjct: 323 RLQEAVERGPEEHPGAKYVIRPDGTRVDLRVTGVTGAPSLQPGWIVERHLMDDDVIIFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS+E RAE++ + +
Sbjct: 383 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCM 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
P QI++PQ+N+PVMGIVQDTL + K T+RD F+D+
Sbjct: 443 VPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDRA 480
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 98/111 (88%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D++IFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 368 VERHLMDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 427
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+E RAE++ + + P QI++PQ+N+PVMGIVQDTL + K T+RD F+D
Sbjct: 428 PQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMD 478
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E V RG ++PGAKY++R +G R+DLR LQ G+ VERH+ D D++IFNRQP+
Sbjct: 326 EAVERGPEEHPGAKYVIRPDGTRVDLRVTGVTGAPSLQPGWIVERHLMDDDVIIFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 386 LHKMSMMGHRVKVMPYSTFRLNLSV 410
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 402 KLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLAL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 522 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 558
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 96/111 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 446 KVERHLMDGDIILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 506 VPQSEESRAELKQLALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 556
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 405 QLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPS 464
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 LHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G +++PGA++I+R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 396 KLTQFVQNGPNEHPGARFIIRSDGTRIDLRHHRRATGIQLEYGWKVERHLIDGDYIIFNR 455
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 456 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 515
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V K+ +RDVFL K
Sbjct: 516 VPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFLTK 552
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 440 KVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 499
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V K+ +RDVFL
Sbjct: 500 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFL 550
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGA++I+R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 397 LTQFVQNGPNEHPGARFIIRSDGTRIDLRHHRRATGIQLEYGWKVERHLIDGDYIIFNRQ 456
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 457 PSLHKESMMGHRVRVMPYSTFRLNLSV 483
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+Y+VR +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 402 KLHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L KM +RDVFL K
Sbjct: 522 VPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFLTK 558
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 446 KVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L KM +RDVFL
Sbjct: 506 VPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFL 556
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGA+Y+VR +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 403 LHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQ 462
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 463 PSLHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+Y+VR +G RIDLR H + + L+ G+KVERH+ GD +IFNR
Sbjct: 402 KLHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV+ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L KM +RDVFL K
Sbjct: 522 VPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFLTK 558
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 446 KVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 505
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV+ + + P I++PQ N P+MGIVQD+L KM +RDVFL
Sbjct: 506 VPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGAYKMCRRDVFL 556
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGA+Y+VR +G RIDLR H + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 403 LHQLVENGPNEHPGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQ 462
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 463 PSLHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|133328|sp|P14248.1|RPB1_PLAFD RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|9943|emb|CAA34560.1| unnamed protein product [Plasmodium falciparum]
Length = 2452
Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats.
Identities = 97/156 (62%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++++ + R
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQR 542
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 543 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 578
Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VR+ +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NLS
Sbjct: 448 LRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSV 507
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + RQI++PQ N+PVMGIVQD+L A+RK
Sbjct: 508 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKF 567
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 568 TRRDNFL 574
Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNL 505
>gi|124505021|ref|XP_001351252.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|3758846|emb|CAB11131.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 2457
Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats.
Identities = 97/156 (62%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++++ + R
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQR 542
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 543 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 578
Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VR+ +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NLS
Sbjct: 448 LRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSV 507
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + RQI++PQ N+PVMGIVQD+L A+RK
Sbjct: 508 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKF 567
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 568 TRRDNFL 574
Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNL 505
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 137/182 (75%), Gaps = 7/182 (3%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV G +YPGAKYI R++G +++L + S+L L+ GYKV RHIRDGD V+FNRQ
Sbjct: 296 MQKLVENGPDEYPGAKYIEREDGFKVNLAYVRNRSELQLELGYKVIRHIRDGDYVLFNRQ 355
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGHR+RVLP+STFR+NLS TSPYNADFDGDEMNLHVPQ+ +TRAEV+ + +
Sbjct: 356 PSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTHQTRAEVQELMLV 415
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-----VERHIRDGDLVIFNRQPTL 261
P I++PQ N+PVMGIVQDTL T+RD FL++ + H+ D D VI +P +
Sbjct: 416 PHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMNLLMHVGDWDGVI--PKPAI 473
Query: 262 HK 263
+K
Sbjct: 474 YK 475
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KV RHIRDGD V+FNRQP+LHKMS+MGHR+RVLP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 339 KVIRHIRDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ +TRAEV+ + + P I++PQ N+PVMGIVQDTL T+RD FL+
Sbjct: 399 VPQTHQTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLE 450
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +YPGAKYI R++G +++L + S+L L+ GYKV RHIRDGD V+FNRQ
Sbjct: 296 MQKLVENGPDEYPGAKYIEREDGFKVNLAYVRNRSELQLELGYKVIRHIRDGDYVLFNRQ 355
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHR+RVLP+STFR+NL +
Sbjct: 356 PSLHKMSIMGHRIRVLPYSTFRLNLSV 382
>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
Length = 998
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFN
Sbjct: 304 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFMIFNG 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 364 XXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 424 VPLNIVSPQRNWPIMGIVQDTLCGIYKICRRDVFLSE 460
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 89/111 (80%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFN HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 348 KVERHIVDGDFMIFNGXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 408 VPQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKICRRDVFL 458
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFN
Sbjct: 305 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFMIFNGX 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 365 XXXHKESMMGHRVRVMPYSTFRLNLSV 391
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 129/160 (80%), Gaps = 3/160 (1%)
Query: 86 RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVI 142
R+ +LV G PG AKYI+R++G+R+DLRF + SD L+ GYKVERH+ +GD V+
Sbjct: 375 RLRKLVENGPHPPPGETGAKYIIREDGQRLDLRFMKRESDKRLEYGYKVERHMINGDCVL 434
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
FNRQP+LHKMS+MGHRVR++P+STFRMN+S T PYNADFDGDEMN+H+PQSMETRAEV+
Sbjct: 435 FNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSMETRAEVQE 494
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + P+ I++PQ N+PVM IVQDTL A R +TKRD F+ K
Sbjct: 495 LMMVPKMIVSPQANKPVMAIVQDTLLACRLITKRDTFITK 534
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 102/122 (83%)
Query: 231 RKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYN 290
R+ KR + KVERH+ +GD V+FNRQP+LHKMS+MGHRVR++P+STFRMN+S T PYN
Sbjct: 411 RESDKRLEYGYKVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYN 470
Query: 291 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 350
ADFDGDEMN+H+PQSMETRAEV+ + + P+ I++PQ N+PVM IVQDTL A R +TKRD
Sbjct: 471 ADFDGDEMNMHLPQSMETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLACRLITKRDT 530
Query: 351 FL 352
F+
Sbjct: 531 FI 532
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 65/74 (87%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+R++G+R+DLRF + SD L+ GYKVERH+ +GD V+FNRQP+LHKMS+MGHRV
Sbjct: 392 GAKYIIREDGQRLDLRFMKRESDKRLEYGYKVERHMINGDCVLFNRQPSLHKMSIMGHRV 451
Query: 74 RVLPWSTFRMNLRM 87
R++P+STFRMN+ +
Sbjct: 452 RIMPYSTFRMNISV 465
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 129/160 (80%), Gaps = 3/160 (1%)
Query: 86 RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVI 142
R+ +LV G PG AKYI+R++G+R+DLRF K SD L+ GY+VERH+ +GD V+
Sbjct: 378 RLRKLVENGPHPPPGETGAKYIIREDGQRLDLRFLKKESDKRLEYGYRVERHMINGDCVL 437
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
FNRQP+LHKMS+MGHRVR++P+STFRMN+S T PYNADFDGDEMN+H+PQS+ETRAEV+
Sbjct: 438 FNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSLETRAEVQE 497
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + P+ I++PQ N+PVM IVQDTL A R MTKRD F+ K
Sbjct: 498 LMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKK 537
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 102/122 (83%)
Query: 231 RKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYN 290
++ KR + +VERH+ +GD V+FNRQP+LHKMS+MGHRVR++P+STFRMN+S T PYN
Sbjct: 414 KESDKRLEYGYRVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYN 473
Query: 291 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 350
ADFDGDEMN+H+PQS+ETRAEV+ + + P+ I++PQ N+PVM IVQDTL A R MTKRD
Sbjct: 474 ADFDGDEMNMHLPQSLETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDT 533
Query: 351 FL 352
F+
Sbjct: 534 FI 535
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 65/74 (87%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+R++G+R+DLRF K SD L+ GY+VERH+ +GD V+FNRQP+LHKMS+MGHRV
Sbjct: 395 GAKYIIREDGQRLDLRFLKKESDKRLEYGYRVERHMINGDCVLFNRQPSLHKMSIMGHRV 454
Query: 74 RVLPWSTFRMNLRM 87
R++P+STFRMN+ +
Sbjct: 455 RIMPYSTFRMNISV 468
>gi|125657568|gb|ABN48847.1| RNA polymerase II largest subunit [Bathysiphon flexilis]
Length = 501
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 128/158 (81%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELV G ++ GAK I+RD+G++IDLR+ + SD++L+ GY VERHIR+GD+V+FNRQ
Sbjct: 312 MKELVEHGPNELNGAKSIIRDDGKQIDLRWVARTSDMNLEPGYIVERHIRNGDIVLFNRQ 371
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM H V++LPWSTFR+NLS TSPYNADFDGDEMNLHVPQS R+E+ N+ +
Sbjct: 372 PSLHKMSMMAHFVKILPWSTFRINLSVTSPYNADFDGDEMNLHVPQSENARSELLNLCLV 431
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P QI++PQ+NRPVMGIVQDTL V K T++D F K E
Sbjct: 432 PTQIVSPQSNRPVMGIVQDTLLGVMKFTRKDEFFKKNE 469
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 94/110 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHIR+GD+V+FNRQP+LHKMSMM H V++LPWSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 356 VERHIRNGDIVLFNRQPSLHKMSMMAHFVKILPWSTFRINLSVTSPYNADFDGDEMNLHV 415
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R+E+ N+ + P QI++PQ+NRPVMGIVQDTL V K T++D F
Sbjct: 416 PQSENARSELLNLCLVPTQIVSPQSNRPVMGIVQDTLLGVMKFTRKDEFF 465
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 71/85 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV G ++ GAK I+RD+G++IDLR+ + SD++L+ GY VERHIR+GD+V+FNRQ
Sbjct: 312 MKELVEHGPNELNGAKSIIRDDGKQIDLRWVARTSDMNLEPGYIVERHIRNGDIVLFNRQ 371
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMM H V++LPWSTFR+NL
Sbjct: 372 PSLHKMSMMAHFVKILPWSTFRINL 396
>gi|120561164|gb|ABM26977.1| RNA polymerase II largest subunit [Nosema apis]
Length = 728
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 134/174 (77%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P + N+ ++ ELV G ++YPGA Y++R +G+RIDL+F+ SD+ L+ GY
Sbjct: 255 KIHTFPEAITSYNIHKLSELVSNGPNEYPGANYVIRSDGQRIDLKFNR--SDIKLEEGYI 312
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD+V+FNRQP+LHKMSMMGH VRV+ TFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 313 VERHMQNGDIVLFNRQPSLHKMSMMGHYVRVMEGKTFRLNLSVTTPYNADFDGDEMNLHM 372
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS +RAE+E + + +Q++TPQ NRP+MGIVQDTLT +R T RD F DK E
Sbjct: 373 PQSHNSRAELEELCLVSKQVLTPQANRPIMGIVQDTLTGLRLFTLRDSFFDKRE 426
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Query: 232 KMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
K + D+ L++ VERH+++GD+V+FNRQP+LHKMSMMGH VRV+ TFR+NLS T+P
Sbjct: 299 KFNRSDIKLEEGYIVERHMQNGDIVLFNRQPSLHKMSMMGHYVRVMEGKTFRLNLSVTTP 358
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLH+PQS +RAE+E + + +Q++TPQ NRP+MGIVQDTLT +R T R
Sbjct: 359 YNADFDGDEMNLHMPQSHNSRAELEELCLVSKQVLTPQANRPIMGIVQDTLTGLRLFTLR 418
Query: 349 DVFLD 353
D F D
Sbjct: 419 DSFFD 423
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G ++YPGA Y++R +G+RIDL+F+ SD+ L+ GY VERH+++GD+V+FNRQP+
Sbjct: 273 ELVSNGPNEYPGANYVIRSDGQRIDLKFNR--SDIKLEEGYIVERHMQNGDIVLFNRQPS 330
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH VRV+ TFR+NL +
Sbjct: 331 LHKMSMMGHYVRVMEGKTFRLNLSV 355
>gi|21280519|gb|AAM45152.1|AF395111_1 RNA polymerase II largest subunit [Ochromonas danica]
Length = 1064
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 124/154 (80%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
++V RG ++PGA+YIVR +G RIDLR +D+ L+ G+ VERH+RD D+V+FNRQP+
Sbjct: 349 DMVARGPLEWPGARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQPS 408
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS MGHR +VL WSTFR+NLS T+PYNADFDGDEMNLHVPQS+ RA+ + + + PR
Sbjct: 409 LHKMSTMGHRAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLTARADAQELMMVPR 468
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I+TPQ+NR VMGIVQD L V +MTKRDVF+DK
Sbjct: 469 NIVTPQSNRNVMGIVQDALLGVTRMTKRDVFVDK 502
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 94/111 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+V+FNRQP+LHKMS MGHR +VL WSTFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 391 VERHLRDDDIVLFNRQPSLHKMSTMGHRAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHV 450
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ RA+ + + + PR I+TPQ+NR VMGIVQD L V +MTKRDVF+D
Sbjct: 451 PQSLTARADAQELMMVPRNIVTPQSNRNVMGIVQDALLGVTRMTKRDVFVD 501
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
++V RG ++PGA+YIVR +G RIDLR +D+ L+ G+ VERH+RD D+V+FNRQP+
Sbjct: 349 DMVARGPLEWPGARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQPS 408
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMS MGHR +VL WSTFR+NL +
Sbjct: 409 LHKMSTMGHRAKVLDWSTFRLNLSV 433
>gi|78714210|gb|ABB51087.1| RNA polymerase II largest subunit [Bondarzewia montana]
Length = 732
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 123/154 (79%), Gaps = 2/154 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELVR G + YPGA+Y+VRD ERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 318 ELVRNGPTTYPGARYVVRDTNERIDLRYN-KRADTFLQFGWIVERHLKDGDFVLFNRQPS 376
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM-NLHVPQSMETRAEVENIHVTP 207
LHKMSMM HRVR++P+STFR+NLS T PYNADFDGDEM VPQS ETRAE+ I P
Sbjct: 377 LHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMXXXXVPQSEETRAELSQIAWVP 436
Query: 208 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
RQII+PQ N+PVMGIVQDTL +RK T RD FLD
Sbjct: 437 RQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLD 470
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 98/128 (76%), Gaps = 4/128 (3%)
Query: 230 VRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + D FL VERH++DGD V+FNRQP+LHKMSMM HRVR++P+STFR+NLS T
Sbjct: 343 LRYNKRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVT 402
Query: 287 SPYNADFDGDEM-NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
PYNADFDGDEM VPQS ETRAE+ I PRQII+PQ N+PVMGIVQDTL +RK
Sbjct: 403 PPYNADFDGDEMXXXXVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKF 462
Query: 346 TKRDVFLD 353
T RD FLD
Sbjct: 463 TLRDTFLD 470
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G + YPGA+Y+VRD ERIDLR++ K +D LQ G+ VERH++DGD V+FNRQP+
Sbjct: 318 ELVRNGPTTYPGARYVVRDTNERIDLRYN-KRADTFLQFGWIVERHLKDGDFVLFNRQPS 376
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRVR++P+STFR+NL +
Sbjct: 377 LHKMSMMSHRVRLMPYSTFRLNLSV 401
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/171 (57%), Positives = 135/171 (78%), Gaps = 6/171 (3%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPS--DLHLQCGYKV 131
+V P++ RMN ELV G YPGAKY++RD+G RIDL+F S + LQ GY +
Sbjct: 358 KVTPFNFERMN----ELVMNGPETYPGAKYVLRDDGTRIDLKFLSDRSTDQVQLQYGYTI 413
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH++DGD+V+FNRQP+LHKMSMMGHRV+V+P+STFR+NLS +PYNADFDGDEMNLH+P
Sbjct: 414 ERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVTPYNADFDGDEMNLHLP 473
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QS++T+ E+ + + P+ IITPQ++RP++ +VQDTL A K T+RDV+++K
Sbjct: 474 QSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTRRDVYIEK 524
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 98/111 (88%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ERH++DGD+V+FNRQP+LHKMSMMGHRV+V+P+STFR+NLS +PYNADFDGDEMNLH+
Sbjct: 413 IERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVTPYNADFDGDEMNLHL 472
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS++T+ E+ + + P+ IITPQ++RP++ +VQDTL A K T+RDV+++
Sbjct: 473 PQSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTRRDVYIE 523
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPS--DLHLQCGYKVERHIRDGDLVIFN 58
M ELV G YPGAKY++RD+G RIDL+F S + LQ GY +ERH++DGD+V+FN
Sbjct: 367 MNELVMNGPETYPGAKYVLRDDGTRIDLKFLSDRSTDQVQLQYGYTIERHLQDGDVVLFN 426
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RQP+LHKMSMMGHRV+V+P+STFR+NL +
Sbjct: 427 RQPSLHKMSMMGHRVKVMPYSTFRLNLSV 455
>gi|83320472|gb|ABC02863.1| RNA polymerase II largest subunit, partial [Monoblepharella sp.
M15]
Length = 547
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 124/157 (78%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV G ++YPGA ++R G+ I+LR + SD+ L G +VERHI DGD VIFNR
Sbjct: 116 RLQRLVANGYNEYPGANRVIRAGGDVINLRHASRTSDILLNVGDRVERHILDGDYVIFNR 175
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH PQS ETRAE++ I
Sbjct: 176 QPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIQEIMQ 235
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQII+P++N+PVMGIVQDTL +RK T RD F+ +
Sbjct: 236 VPRQIISPKHNQPVMGIVQDTLCGIRKFTLRDNFMTR 272
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 101/119 (84%), Gaps = 3/119 (2%)
Query: 237 DVFL---DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADF 293
D+ L D+VERHI DGD VIFNRQP+LHKMSMMGHRVRV+P+STFR+NLS TSPYNADF
Sbjct: 152 DILLNVGDRVERHILDGDYVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADF 211
Query: 294 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
DGDEMNLH PQS ETRAE++ I PRQII+P++N+PVMGIVQDTL +RK T RD F+
Sbjct: 212 DGDEMNLHAPQSYETRAEIQEIMQVPRQIISPKHNQPVMGIVQDTLCGIRKFTLRDNFM 270
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 65/84 (77%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G ++YPGA ++R G+ I+LR + SD+ L G +VERHI DGD VIFNRQP+L
Sbjct: 120 LVANGYNEYPGANRVIRAGGDVINLRHASRTSDILLNVGDRVERHILDGDYVIFNRQPSL 179
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGHRVRV+P+STFR+NL +
Sbjct: 180 HKMSMMGHRVRVMPYSTFRLNLSV 203
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 399 KLHQLVENGPNEHPGAKYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 459 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCL 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++ Q N P+MGIVQD+L K+ +RD F+DK
Sbjct: 519 VPNNIVSTQKNGPLMGIVQDSLAGAYKICRRDTFIDK 555
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 93/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 443 KVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 502
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAEV+ + + P I++ Q N P+MGIVQD+L K+ +RD F+D
Sbjct: 503 VPQTEETRAEVKELCLVPNNIVSTQKNGPLMGIVQDSLAGAYKICRRDTFID 554
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 400 LHQLVENGPNEHPGAKYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQ 459
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 460 PSLHKESMMGHRVRVMPYSTFRLNLSV 486
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 402 KLQQLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLAL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 522 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 558
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 100/124 (80%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 433 AKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 492
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 493 YNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 552
Query: 349 DVFL 352
D FL
Sbjct: 553 DTFL 556
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 405 QLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPS 464
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 LHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 402 KLQQLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNR 461
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 462 QPSLHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLAL 521
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 522 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 558
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 100/124 (80%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T+P
Sbjct: 433 AKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTTP 492
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 493 YNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRR 552
Query: 349 DVFL 352
D FL
Sbjct: 553 DTFL 556
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 405 QLVSNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPS 464
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 465 LHKESMMGHRVRVMPYSTFRLNLSV 489
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 128/159 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G +++PGA+++VR +G RIDLR + + + L+ G+KVERH+ DGD +IFNR
Sbjct: 400 KLTKYVQNGPTEHPGARFVVRSDGTRIDLRHSRRATGIQLEYGWKVERHLLDGDYIIFNR 459
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 460 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 519
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL V K+ +RDVFL K E
Sbjct: 520 VPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFLTKEE 558
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 444 KVERHLLDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 503
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL V K+ +RDVFL
Sbjct: 504 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGVYKLCRRDVFL 554
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGA+++VR +G RIDLR + + + L+ G+KVERH+ DGD +IFNRQ
Sbjct: 401 LTKYVQNGPTEHPGARFVVRSDGTRIDLRHSRRATGIQLEYGWKVERHLLDGDYIIFNRQ 460
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 461 PSLHKESMMGHRVRVMPYSTFRLNLSV 487
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 125/157 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 404 KLQQLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNR 463
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMM HRVRV+P+STFRMNLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 464 QPSLHKESMMAHRVRVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLAL 523
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD+FL K
Sbjct: 524 VPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTK 560
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFRMNLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRMNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 508 VPQSEESRAELSQLALVPMNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 558
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 68/85 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 407 QLVANGPNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNRQPS 466
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMM HRVRV+P+STFRMNL +
Sbjct: 467 LHKESMMAHRVRVMPYSTFRMNLSV 491
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 126/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL K+ +RDVFL K E
Sbjct: 521 VPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEE 559
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 555
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVKVMPYSTFRLNLSV 488
>gi|120561174|gb|ABM26982.1| RNA polymerase II largest subunit [Vairimorpha cheracis]
Length = 936
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 251 KIHTFPEKITPFNAEKLERLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYV 308
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++DGD+V+FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 309 VERHMQDGDIVLFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHM 368
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS + AE+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 369 PQSYNSVAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTMRDSFFDKCE 422
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 128/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 223 RVDFSARSVITADANISLEEVGVP------VEVAKIHTFPEKI-TPFNAEKLERLVANGP 275
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH++DGD+V+FNRQP+LHKMSMMGH
Sbjct: 276 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYVVERHMQDGDIVLFNRQPSLHKMSMMGH 335
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQS + AE+E I + P+QI+ PQ+N+
Sbjct: 336 KVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQSYNSVAELEEICMVPKQILGPQSNK 395
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 396 PVMGIVQDTLTGLRFFTMRDSFFD 419
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH++DGD+V+FNRQP+L
Sbjct: 270 LVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYVVERHMQDGDIVLFNRQPSL 327
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMMGH+VRV+ TFR+NL +
Sbjct: 328 HKMSMMGHKVRVMAGKTFRLNLSV 351
>gi|70927365|ref|XP_736080.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56510310|emb|CAH85911.1| hypothetical protein PC301746.00.0 [Plasmodium chabaudi chabaudi]
Length = 264
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 127/156 (81%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 62 KLVERGPYEWPGAKYIIRDNGSKYDLRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPS 121
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ +
Sbjct: 122 LHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQN 181
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 182 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 217
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 87 LRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 146
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 147 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQNQIVSPQGNKPVMGIVQDSLLAIRKF 206
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 207 TRRDNFL 213
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 62 KLVERGPYEWPGAKYIIRDNGSKYDLRHVRKNSEKELEYGYKVERHMTDEDYILFNRQPS 121
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 122 LHKMSIMGHKAKILPYSTFRLNL 144
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 126/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL K+ +RDVFL K E
Sbjct: 521 VPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEE 559
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 555
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVKVMPYSTFRLNLSV 488
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 126/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNR
Sbjct: 401 KLTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL K+ +RDVFL K E
Sbjct: 521 VPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEE 559
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD +IFNRQP+LHK SMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFL 555
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 69/87 (79%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V+ G +++PGAKY++R +G R+DLR + L L+ G+KVERH+ DGD +IFNRQ
Sbjct: 402 LTQYVQNGPNEHPGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRV+V+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHRVKVMPYSTFRLNLSV 488
>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 1002
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD + FNR
Sbjct: 308 KLHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIXFNR 367
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 368 HHAXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 427
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MG VQDTL + K+ +RDVFL+K
Sbjct: 428 VPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLNK 464
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD + FNR HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 352 KVERHIIDGDYIXFNRHHAXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 411
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + + P I++PQ N P+MG VQDTL + K+ +RDVFL+
Sbjct: 412 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLN 463
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD + FNR
Sbjct: 309 LHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIXFNRH 368
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 369 HAXHKESMMGHRVRVMPYSTFRLNLSV 395
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM +LV G ++PGA Y++R++GER+DLR S + L G+KVERHI DGD+V+FNR
Sbjct: 323 RMRQLVENGPHKHPGANYVIREDGERLDLRRIRDRSTVPLSYGWKVERHIHDGDVVVFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVRVLP+STFR+NLS T+PYNADFDGDEMNLHVPQS ETRAE+E + +
Sbjct: 383 QPTLHKMSMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMM 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I++PQ N+PVMGIVQD+L + TKRD FL++
Sbjct: 443 VPRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLER 479
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+V+FNRQPTLHKMSMMGHRVRVLP+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 367 KVERHIHDGDVVVFNRQPTLHKMSMMGHRVRVLPYSTFRLNLSVTTPYNADFDGDEMNLH 426
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+E + + PR I++PQ N+PVMGIVQD+L + TKRD FL+
Sbjct: 427 VPQSHETRAELEELMMVPRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLE 478
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 70/87 (80%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G ++PGA Y++R++GER+DLR S + L G+KVERHI DGD+V+FNRQ
Sbjct: 324 MRQLVENGPHKHPGANYVIREDGERLDLRRIRDRSTVPLSYGWKVERHIHDGDVVVFNRQ 383
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
PTLHKMSMMGHRVRVLP+STFR+NL +
Sbjct: 384 PTLHKMSMMGHRVRVLPYSTFRLNLSV 410
>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
Length = 996
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 122/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IF
Sbjct: 316 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFXX 375
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGH VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 376 XXXXHKESMMGHSVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 435
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 436 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 472
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 87/111 (78%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IF HK SMMGH VRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 360 KVERHIVDGDYIIFXXXXXXHKESMMGHSVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 420 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 470
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD +IF
Sbjct: 317 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFXXX 376
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGH VRV+P+STFR+NL +
Sbjct: 377 XXXHKESMMGHSVRVMPYSTFRLNLSV 403
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 130/178 (73%), Gaps = 11/178 (6%)
Query: 76 LPWSTFRM----------NLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH 124
+P+ST R+ N+ + LV G + +PGA+YIVRDNGERIDLR +
Sbjct: 377 VPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPGARYIVRDNGERIDLRHAKRAGAQQ 436
Query: 125 LQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGD 184
L G+KVERH+ DGD ++FNRQP+LHK SMMGHRVRV+P+STFRMNLS TSPYNADFDGD
Sbjct: 437 LLYGWKVERHLDDGDYILFNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGD 496
Query: 185 EMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
EMNLHVPQ E+RAE+ + + P+ I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 497 EMNLHVPQGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 554
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 99/124 (79%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
A R ++ ++ KVERH+ DGD ++FNRQP+LHK SMMGHRVRV+P+STFRMNLS TSP
Sbjct: 429 AKRAGAQQLLYGWKVERHLDDGDYILFNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSP 488
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLHVPQ E+RAE+ + + P+ I++PQ N P+MGIVQDTL + K+ +R
Sbjct: 489 YNADFDGDEMNLHVPQGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRR 548
Query: 349 DVFL 352
D FL
Sbjct: 549 DTFL 552
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 66/84 (78%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + +PGA+YIVRDNGERIDLR + L G+KVERH+ DGD ++FNRQP+L
Sbjct: 402 LVANGPNLHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPSL 461
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFRMNL +
Sbjct: 462 HKESMMGHRVRVMPFSTFRMNLSV 485
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 139/210 (66%), Gaps = 44/210 (20%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 370 VPWS-IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 428
Query: 121 SDLHLQCGYK----------------------------VERHIRDGDLVIFNRQPTLHKM 152
SD HL+ GY+ VERH++DGD V+FNRQP+LHKM
Sbjct: 429 SDQHLELGYRYVLLSYSIHSTHKRLFLEVVIFMLSWSQVERHLQDGDFVLFNRQPSLHKM 488
Query: 153 SMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIIT 212
S+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++
Sbjct: 489 SIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 548
Query: 213 PQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQ NRPVMGIVQDTL RK+TKRD F++K
Sbjct: 549 PQANRPVMGIVQDTLLGCRKITKRDTFIEK 578
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 466 QVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 525
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 526 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 577
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 31/116 (26%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYK--------------- 44
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GY+
Sbjct: 394 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYRYVLLSYSIHSTHKRL 453
Query: 45 -------------VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
VERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 454 FLEVVIFMLSWSQVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSV 509
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/183 (55%), Positives = 137/183 (74%), Gaps = 7/183 (3%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
M +LV G ++YPGAKYI RD+G++++L + + +L+ G+KV RHI+DGD V+FNR
Sbjct: 296 EMRKLVENGPTEYPGAKYIERDDGQKVNLSYVADRTSTNLEIGFKVIRHIKDGDYVLFNR 355
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHR+RVLP+STFR+NLS TSPYNADFDGDEMNLHVPQS TRAEV+ + +
Sbjct: 356 QPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHGTRAEVQELML 415
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-----VERHIRDGDLVIFNRQPT 260
P I++PQ N+PVMGIVQDTL T+RD F+++ + H+ D D V+ +P
Sbjct: 416 VPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVMMNLLMHVGDWDGVV--PEPA 473
Query: 261 LHK 263
++K
Sbjct: 474 IYK 476
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/112 (69%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KV RHI+DGD V+FNRQP+LHKMS+MGHR+RVLP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 340 KVIRHIKDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADFDGDEMNLH 399
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS TRAEV+ + + P I++PQ N+PVMGIVQDTL T+RD F++
Sbjct: 400 VPQSHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIE 451
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 71/87 (81%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G ++YPGAKYI RD+G++++L + + +L+ G+KV RHI+DGD V+FNRQ
Sbjct: 297 MRKLVENGPTEYPGAKYIERDDGQKVNLSYVADRTSTNLEIGFKVIRHIKDGDYVLFNRQ 356
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHR+RVLP+STFR+NL +
Sbjct: 357 PSLHKMSIMGHRIRVLPYSTFRLNLSV 383
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats.
Identities = 94/159 (59%), Positives = 128/159 (80%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G ++YPGA Y++R++G+RIDL F+ D+ L+ GY VERH++DGD+V+FNR
Sbjct: 358 RLTKLVSNGPNEYPGANYVIRNDGQRIDLNFNR--GDIKLEEGYVVERHMQDGDVVLFNR 415
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H VRV+ TFR+NLSC SPYNADFDGDEMNLH+PQS ++AE+E + +
Sbjct: 416 QPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCL 475
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+Q+++PQ+N+PVMGIVQD+LTA+R T RD F D+ E
Sbjct: 476 VSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRE 514
Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 19/174 (10%)
Query: 198 AEVENIHVTPRQIITPQNNRPVMGIVQDTLT-------AVRKMTKR--------DVFLDK 242
+E+ IH P +IITP N + +V + +R +R D+ L++
Sbjct: 339 SEIAKIHTFP-EIITPFNIDRLTKLVSNGPNEYPGANYVIRNDGQRIDLNFNRGDIKLEE 397
Query: 243 ---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 299
VERH++DGD+V+FNRQP+LHKMSMM H VRV+ TFR+NLSC SPYNADFDGDEMN
Sbjct: 398 GYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMN 457
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
LH+PQS ++AE+E + + +Q+++PQ+N+PVMGIVQD+LTA+R T RD F D
Sbjct: 458 LHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFD 511
Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R++G+RIDL F+ D+ L+ GY VERH++DGD+V+FNRQP+
Sbjct: 361 KLVSNGPNEYPGANYVIRNDGQRIDLNFNR--GDIKLEEGYVVERHMQDGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM H VRV+ TFR+NL
Sbjct: 419 LHKMSMMAHFVRVMEGKTFRLNL 441
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 126/168 (75%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V PW+ ++ +L+ G + +PGA+YIVRDNGERIDLR + L G+KVERH
Sbjct: 391 VTPWNIEKLQ----KLIANGPNIHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERH 446
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
+ +GD ++FNRQP+LHK SMMGHRVRV+P+STFRMNLS TSPYNADFDGDEMNLHVPQ
Sbjct: 447 LDNGDYILFNRQPSLHKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGE 506
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
E RAE+ + + P+ I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 507 EARAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 554
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 106/151 (70%), Gaps = 6/151 (3%)
Query: 202 NIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTL 261
NIH R I+ R D A R ++ ++ KVERH+ +GD ++FNRQP+L
Sbjct: 408 NIHPGARYIVRDNGER------IDLRHAKRAGAQQLLYGWKVERHLDNGDYILFNRQPSL 461
Query: 262 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 321
HK SMMGHRVRV+P+STFRMNLS TSPYNADFDGDEMNLHVPQ E RAE+ + + P+
Sbjct: 462 HKESMMGHRVRVMPFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAELTLVPKN 521
Query: 322 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 522 IVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 552
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+L+ G + +PGA+YIVRDNGERIDLR + L G+KVERH+ +GD ++FNRQP+
Sbjct: 401 KLIANGPNIHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILFNRQPS 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFRMNL +
Sbjct: 461 LHKESMMGHRVRVMPFSTFRMNLSV 485
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/154 (61%), Positives = 126/154 (81%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 150
V RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+LH
Sbjct: 425 VERGPYEWPGAKYIIRDNGTKYDLRHVRKSSEKELEYGYKVERHMTDEDYILFNRQPSLH 484
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
KMS+MGH+ ++LP+STFR+NL+ TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI
Sbjct: 485 KMSIMGHKAKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQI 544
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 545 VSPQGNKPVMGIVQDSLLAIRKFTRRDNFLCKEE 578
Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats.
Identities = 76/127 (59%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VRK +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NL+
Sbjct: 448 LRHVRKSSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAV 507
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + +QI++PQ N+PVMGIVQD+L A+RK
Sbjct: 508 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKF 567
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 568 TRRDNFL 574
Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/81 (60%), Positives = 65/81 (80%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V RG ++PGAKYI+RDNG + DLR K S+ L+ GYKVERH+ D D ++FNRQP+LH
Sbjct: 425 VERGPYEWPGAKYIIRDNGTKYDLRHVRKSSEKELEYGYKVERHMTDEDYILFNRQPSLH 484
Query: 65 KMSMMGHRVRVLPWSTFRMNL 85
KMS+MGH+ ++LP+STFR+NL
Sbjct: 485 KMSIMGHKAKILPYSTFRLNL 505
>gi|68300854|gb|AAY89364.1| RNA polymerase IV largest subunit [Glaucocystis nostochinearum]
Length = 526
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/134 (69%), Positives = 121/134 (90%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM+EL+R G +++PGA+YI+RD+G+R+DLR+ K SDLHL+ GY+VERHI+DGD V+FNR
Sbjct: 393 RMYELIRNGPNEHPGARYIIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+HV Q+ ETRAEV+ I +
Sbjct: 453 QPSLHKMSIMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTFETRAEVQEICL 512
Query: 206 TPRQIITPQNNRPV 219
PRQII+PQ+NRPV
Sbjct: 513 VPRQIISPQSNRPV 526
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 83/90 (92%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD V+FNRQP+LHKMS+MGHRV+V+P+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 437 RVERHIQDGDYVLFNRQPSLHKMSIMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPV 331
V Q+ ETRAEV+ I + PRQII+PQ+NRPV
Sbjct: 497 VAQTFETRAEVQEICLVPRQIISPQSNRPV 526
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 78/85 (91%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M+EL+R G +++PGA+YI+RD+G+R+DLR+ K SDLHL+ GY+VERHI+DGD V+FNRQ
Sbjct: 394 MYELIRNGPNEHPGARYIIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGHRV+V+P+STFR+NL
Sbjct: 454 PSLHKMSIMGHRVKVMPYSTFRLNL 478
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1
ERTm2]
Length = 1609
Score = 212 bits (539), Expect = 3e-52, Method: Composition-based stats.
Identities = 92/159 (57%), Positives = 129/159 (81%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+RG +PGA Y+VRD+G++IDLRFH +++LQ GY VERH+ +GD V+FNR
Sbjct: 376 KLSQLVQRGPYNHPGANYVVRDDGQKIDLRFHK--GEVNLQIGYVVERHLSNGDTVLFNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+ RV+ +STFR+NLS T+PYNADFDGDEMNLH+PQS+ + E++ + +
Sbjct: 434 QPSLHKMSMMAHKARVMKYSTFRLNLSVTAPYNADFDGDEMNLHLPQSIPAQTELKELAL 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ I++PQ+N+PVMGIVQDTL V K+T+RD+FL K +
Sbjct: 494 VEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTKSQ 532
Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats.
Identities = 69/110 (62%), Positives = 93/110 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD V+FNRQP+LHKMSMM H+ RV+ +STFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 419 VERHLSNGDTVLFNRQPSLHKMSMMAHKARVMKYSTFRLNLSVTAPYNADFDGDEMNLHL 478
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS+ + E++ + + + I++PQ+N+PVMGIVQDTL V K+T+RD+FL
Sbjct: 479 PQSIPAQTELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFL 528
Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/83 (60%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV+RG +PGA Y+VRD+G++IDLRFH +++LQ GY VERH+ +GD V+FNRQP+
Sbjct: 379 QLVQRGPYNHPGANYVVRDDGQKIDLRFHK--GEVNLQIGYVVERHLSNGDTVLFNRQPS 436
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM H+ RV+ +STFR+NL
Sbjct: 437 LHKMSMMAHKARVMKYSTFRLNL 459
>gi|125657566|gb|ABN48846.1| RNA polymerase II largest subunit [Bulimina marginata]
Length = 518
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + NL RM +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI
Sbjct: 318 PERVTKFNLHRMKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHI 377
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
++GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 378 QNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHVPQSEN 437
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERH 246
RAE+ + P QI+TPQ N PVMGIVQD L K TKRD F + E +
Sbjct: 438 ARAELIELCKVPTQIVTPQKNAPVMGIVQDALLGCMKFTKRDQFFTREELY 488
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI++GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 373 VERHIQNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHV 432
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAE+ + P QI+TPQ N PVMGIVQD L K TKRD F
Sbjct: 433 PQSENARAELIELCKVPTQIVTPQKNAPVMGIVQDALLGCMKFTKRDQFF 482
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI++GD+V+FNRQ
Sbjct: 329 MKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHIQNGDIVLFNRQ 388
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H V +LPWSTFR+NL +
Sbjct: 389 PSLHKMSMMAHHVVILPWSTFRINLSV 415
>gi|125657580|gb|ABN48853.1| RNA polymerase II largest subunit [Globobulimina turgida]
Length = 503
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + NL RM +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI
Sbjct: 304 PERVTKFNLHRMKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHI 363
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
++GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 364 QNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHVPQSEN 423
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
RAE+ + P QI+TPQ N PVMGIVQD L K T+RD+F ++ E
Sbjct: 424 ARAELIQLCKVPTQIVTPQRNAPVMGIVQDALLGCMKFTRRDMFFNREE 472
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 89/111 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI++GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 359 VERHIQNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHV 418
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS RAE+ + P QI+TPQ N PVMGIVQD L K T+RD+F +
Sbjct: 419 PQSENARAELIQLCKVPTQIVTPQRNAPVMGIVQDALLGCMKFTRRDMFFN 469
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI++GD+V+FNRQ
Sbjct: 315 MKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHIQNGDIVLFNRQ 374
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H V +LPWSTFR+NL +
Sbjct: 375 PSLHKMSMMAHHVVILPWSTFRINLSV 401
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 125/154 (81%), Gaps = 1/154 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G + YPGA+YIVRDNGERIDLR K ++ +L G+KVERH+ DGD+++FNRQP+
Sbjct: 407 KLVNNGPTIYPGARYIVRDNGERIDLRMARK-TNANLLYGWKVERHLLDGDVILFNRQPS 465
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHK SMMGHRVRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS E RAE+ + + P
Sbjct: 466 LHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEARAELLQLALVPN 525
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I++PQ N P+MGIVQD+L + K+ +RDVFL K
Sbjct: 526 NIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTK 559
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 99/126 (78%)
Query: 227 LTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
L RK ++ KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS T
Sbjct: 432 LRMARKTNANLLYGWKVERHLLDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVT 491
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+PYNADFDGDEMN+HVPQS E RAE+ + + P I++PQ N P+MGIVQD+L + K+
Sbjct: 492 TPYNADFDGDEMNMHVPQSEEARAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKIC 551
Query: 347 KRDVFL 352
+RDVFL
Sbjct: 552 RRDVFL 557
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA+YIVRDNGERIDLR K ++ +L G+KVERH+ DGD+++FNRQP+
Sbjct: 407 KLVNNGPTIYPGARYIVRDNGERIDLRMARK-TNANLLYGWKVERHLLDGDVILFNRQPS 465
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 466 LHKESMMGHRVRVMPYSTFRLNLSV 490
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats.
Identities = 95/157 (60%), Positives = 126/157 (80%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R++E VR G + YPGA +++R++G+RI L+F + +D+ L+ G VERH+ +GDLV+FNR
Sbjct: 396 RLWEAVRNGPNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNR 455
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LH+MS+MGHRVR+LP+STFRMNLS TSPYNADFDGDEMNLHVPQS E RAE++ +
Sbjct: 456 QPSLHRMSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMA 515
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ I++PQ NRPVMGIVQD+L T RD FL++
Sbjct: 516 VPKNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLEE 552
Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats.
Identities = 77/111 (69%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GDLV+FNRQP+LH+MS+MGHRVR+LP+STFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 441 VERHLLNGDLVLFNRQPSLHRMSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHV 500
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE++ + P+ I++PQ NRPVMGIVQD+L T RD FL+
Sbjct: 501 PQSEEVRAEIKELMAVPKNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLE 551
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 71/85 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
++E VR G + YPGA +++R++G+RI L+F + +D+ L+ G VERH+ +GDLV+FNRQ
Sbjct: 397 LWEAVRNGPNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQ 456
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LH+MS+MGHRVR+LP+STFRMNL
Sbjct: 457 PSLHRMSIMGHRVRILPYSTFRMNL 481
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/159 (59%), Positives = 128/159 (80%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G ++YPGA Y++R++G+RIDL F+ D+ L+ GY VERH++DGD+V+FNR
Sbjct: 358 RLTKLVSNGPNEYPGANYVIRNDGQRIDLNFNR--GDIKLEEGYVVERHMQDGDVVLFNR 415
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H VRV+ TFR+NLSC SPYNADFDGDEMNLH+PQS ++AE+E + +
Sbjct: 416 QPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCL 475
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+Q+++PQ+N+PVMGIVQD+LTA+R T RD F D+ E
Sbjct: 476 VSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRE 514
Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 19/174 (10%)
Query: 198 AEVENIHVTPRQIITPQNNRPVMGIVQDTLT-------AVRKMTKR--------DVFLDK 242
+E+ IH P +IITP N + +V + +R +R D+ L++
Sbjct: 339 SEIAKIHTFP-EIITPFNIDRLTKLVSNGPNEYPGANYVIRNDGQRIDLNFNRGDIKLEE 397
Query: 243 ---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 299
VERH++DGD+V+FNRQP+LHKMSMM H VRV+ TFR+NLSC SPYNADFDGDEMN
Sbjct: 398 GYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNADFDGDEMN 457
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
LH+PQS ++AE+E + + +Q+++PQ+N+PVMGIVQD+LTA+R T RD F D
Sbjct: 458 LHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFD 511
Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R++G+RIDL F+ D+ L+ GY VERH++DGD+V+FNRQP+
Sbjct: 361 KLVSNGPNEYPGANYVIRNDGQRIDLNFNR--GDIKLEEGYVVERHMQDGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM H VRV+ TFR+NL
Sbjct: 419 LHKMSMMAHFVRVMEGKTFRLNL 441
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats.
Identities = 94/169 (55%), Positives = 129/169 (76%), Gaps = 4/169 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ + ELVR G +PGA+Y+V +G R+DLRF +DL L G+ VER
Sbjct: 319 RVAPYNVHAL----MELVRNGPEVWPGARYVVHADGRRVDLRFVKHLNDLALHTGFVVER 374
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
H+RD DL++FNRQP+LHKMS+M HRV+VL STFR+NLS TSPYNADFDGDEMNLHVPQ+
Sbjct: 375 HLRDDDLIVFNRQPSLHKMSIMAHRVKVLDHSTFRLNLSVTSPYNADFDGDEMNLHVPQN 434
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ +AE++ + + PR +++PQ+N+PVMGIVQD+L A +MT ++ F+D+
Sbjct: 435 VAAKAELQQLMMVPRNVVSPQSNKPVMGIVQDSLLASARMTSKETFIDQ 483
Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/111 (63%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD DL++FNRQP+LHKMS+M HRV+VL STFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 372 VERHLRDDDLIVFNRQPSLHKMSIMAHRVKVLDHSTFRLNLSVTSPYNADFDGDEMNLHV 431
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ++ +AE++ + + PR +++PQ+N+PVMGIVQD+L A +MT ++ F+D
Sbjct: 432 PQNVAAKAELQQLMMVPRNVVSPQSNKPVMGIVQDSLLASARMTSKETFID 482
Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELVR G +PGA+Y+V +G R+DLRF +DL L G+ VERH+RD DL++FNRQ
Sbjct: 328 LMELVRNGPEVWPGARYVVHADGRRVDLRFVKHLNDLALHTGFVVERHLRDDDLIVFNRQ 387
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M HRV+VL STFR+NL
Sbjct: 388 PSLHKMSIMAHRVKVLDHSTFRLNL 412
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 124/154 (80%), Gaps = 1/154 (0%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G + YPGA+YIVRDNGERIDLR K S +L G+KVERH+ DGD+++FNRQP+
Sbjct: 407 KLVNNGPTIYPGARYIVRDNGERIDLRMARKTSS-NLLYGWKVERHLLDGDVILFNRQPS 465
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMN+HVPQS E RAE++ + + P
Sbjct: 466 LHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEARAELQELALVPL 525
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I++PQ N P+MGIVQD+L + K+ +RDVFL K
Sbjct: 526 NIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTK 559
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 100/126 (79%)
Query: 227 LTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
L RK + ++ KVERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T
Sbjct: 432 LRMARKTSSNLLYGWKVERHLLDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVT 491
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+PYNADFDGDEMN+HVPQS E RAE++ + + P I++PQ N P+MGIVQD+L + K+
Sbjct: 492 TPYNADFDGDEMNMHVPQSEEARAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKIC 551
Query: 347 KRDVFL 352
+RDVFL
Sbjct: 552 RRDVFL 557
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA+YIVRDNGERIDLR K S +L G+KVERH+ DGD+++FNRQP+
Sbjct: 407 KLVNNGPTIYPGARYIVRDNGERIDLRMARKTSS-NLLYGWKVERHLLDGDVILFNRQPS 465
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMM HRVRV+P+STFR+NL +
Sbjct: 466 LHKESMMAHRVRVMPYSTFRLNLSV 490
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 147/220 (66%), Gaps = 10/220 (4%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M LV G Q+PGAK IVR +G+R+DLRF SD L GY VER ++D D VIFNRQ
Sbjct: 392 MRNLVMNGPDQHPGAKSIVRSDGKRVDLRFVKMQSDQILDYGYIVERQMQDDDCVIFNRQ 451
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMNLH+PQS ET++E+ NI +
Sbjct: 452 PSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLHLPQSYETKSEIYNIMMV 511
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-----VERHI--RDGDLVI--FNR 257
P QI++PQ N PVMGIVQDTL +T+R+ F++K V H+ DG + I +
Sbjct: 512 PFQIVSPQKNAPVMGIVQDTLLGCSVLTRRNTFVEKDLMMNVLMHVPGFDGRVPIPAIVK 571
Query: 258 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFD-GD 296
P G +V L + R+NLS + Y D D GD
Sbjct: 572 APNNKGPLWTGKQVLSLAIPSRRINLSKLNQYKTDEDTGD 611
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 94/111 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VER ++D D VIFNRQP+LHKMSMMGHRV+++P+STFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 436 VERQMQDDDCVIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNLHL 495
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ET++E+ NI + P QI++PQ N PVMGIVQDTL +T+R+ F++
Sbjct: 496 PQSYETKSEIYNIMMVPFQIVSPQKNAPVMGIVQDTLLGCSVLTRRNTFVE 546
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 66/87 (75%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LV G Q+PGAK IVR +G+R+DLRF SD L GY VER ++D D VIFNRQ
Sbjct: 392 MRNLVMNGPDQHPGAKSIVRSDGKRVDLRFVKMQSDQILDYGYIVERQMQDDDCVIFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHRV+++P+STFR+NL +
Sbjct: 452 PSLHKMSMMGHRVKIMPYSTFRLNLSV 478
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R+ GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 404 KLGELVDNGPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ RDVFL K
Sbjct: 524 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICSRDVFLTK 561
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ RDVFL
Sbjct: 509 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICSRDVFL 559
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R+ GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 405 LGELVDNGPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMMGHR+RV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMGHRIRVMPYSTFRLNLSV 492
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 97/153 (63%), Positives = 124/153 (81%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LV+ G +Q+PGAKYI+R + +IDL SDLH++ G+KVERH+R+ D VIFNRQP+L
Sbjct: 375 LVQNGPTQWPGAKYIIRHDERQIDLSQLKNRSDLHIEPGFKVERHLRNDDYVIFNRQPSL 434
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMS+MGHRV+VLP+STFR+NLS T+PYNADFDGDEMN+HVPQS ET AEV+ I P Q
Sbjct: 435 HKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEVKEIMAVPNQ 494
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I++PQ+N+PVMGIVQD+L V T +D F++K
Sbjct: 495 IVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEK 527
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+R+ D VIFNRQP+LHKMS+MGHRV+VLP+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 415 KVERHLRNDDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMH 474
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET AEV+ I P QI++PQ+N+PVMGIVQD+L V T +D F++
Sbjct: 475 VPQSYETMAEVKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIE 526
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 69/84 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV+ G +Q+PGAKYI+R + +IDL SDLH++ G+KVERH+R+ D VIFNRQP+L
Sbjct: 375 LVQNGPTQWPGAKYIIRHDERQIDLSQLKNRSDLHIEPGFKVERHLRNDDYVIFNRQPSL 434
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMS+MGHRV+VLP+STFR+NL +
Sbjct: 435 HKMSLMGHRVKVLPFSTFRLNLSV 458
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 125/158 (79%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R+ GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 404 KLGELVDNGPDIHPGARYVIRNTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 561
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R+ GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 405 LGELVDNGPDIHPGARYVIRNTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMMGHR+RV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMGHRIRVMPYSTFRLNLSV 492
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 124/157 (78%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+ LV G + +PGAK+I+R +G RIDLR+ S+L L G+ VERH+RD D+V+FNR
Sbjct: 323 ELSALVANGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERHLRDDDIVLFNR 382
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGH+ +VL WSTFR+NLSCTSPYNADFDGDEMNLHVPQ + RAE E + +
Sbjct: 383 QPSLHKMSIMGHKAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAELMML 442
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ R I++ Q+NRPVM IVQD+L A +KMTKR VF++K
Sbjct: 443 SSRVIVSGQSNRPVMSIVQDSLLATQKMTKRSVFIEK 479
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 95/111 (85%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+V+FNRQP+LHKMS+MGH+ +VL WSTFR+NLSCTSPYNADFDGDEMNLHV
Sbjct: 368 VERHLRDDDIVLFNRQPSLHKMSIMGHKAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHV 427
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ + RAE E + ++ R I++ Q+NRPVM IVQD+L A +KMTKR VF++
Sbjct: 428 PQGLAARAEAELMMLSSRVIVSGQSNRPVMSIVQDSLLATQKMTKRSVFIE 478
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 65/82 (79%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + +PGAK+I+R +G RIDLR+ S+L L G+ VERH+RD D+V+FNRQP+L
Sbjct: 327 LVANGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERHLRDDDIVLFNRQPSL 386
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMS+MGH+ +VL WSTFR+NL
Sbjct: 387 HKMSIMGHKAKVLDWSTFRLNL 408
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 125/157 (79%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RG AKY++R+N +RIDL++ K + L+ G KVER+IRDGDLV+ NR
Sbjct: 382 KMQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDKVERNIRDGDLVVVNR 434
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+H PQS+ETR+EVENI +
Sbjct: 435 QPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQSLETRSEVENILL 494
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL K
Sbjct: 495 TPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQK 531
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 97/112 (86%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
DKVER+IRDGDLV+ NRQP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+
Sbjct: 418 DKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNM 477
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQS+ETR+EVENI +TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL
Sbjct: 478 HFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFL 529
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 7/84 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RG AKY++R+N +RIDL++ K + L+ G KVER+IRDGDLV+ NRQ
Sbjct: 383 MQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDKVERNIRDGDLVVVNRQ 435
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+L K MMGHRV+VLPW + R+N
Sbjct: 436 PSLRKEDMMGHRVKVLPWPSIRLN 459
>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
Length = 1006
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ V G + +PGAKY++ NG+R DLR+ + S + L+ G KVERH+ D DL+IFNR
Sbjct: 313 KLAAAVANGPTAHPGAKYVINSNGDRTDLRYAREDSVI-LKIGDKVERHLMDDDLIIFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS +T+AE++ + V
Sbjct: 372 QPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYQTKAEIQELCV 431
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N PVMGIVQDTL + T+RD FL K
Sbjct: 432 VPRQIVSPQKNGPVMGIVQDTLCGITMFTQRDTFLRK 468
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 97/112 (86%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
DKVERH+ D DL+IFNRQP+LHKMSMMGHRV+V+P+STFR+NLS TSPYNADFDGDEMNL
Sbjct: 355 DKVERHLMDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNL 414
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
HVPQS +T+AE++ + V PRQI++PQ N PVMGIVQDTL + T+RD FL
Sbjct: 415 HVPQSYQTKAEIQELCVVPRQIVSPQKNGPVMGIVQDTLCGITMFTQRDTFL 466
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G + +PGAKY++ NG+R DLR+ + S + L+ G KVERH+ D DL+IFNRQP+LH
Sbjct: 318 VANGPTAHPGAKYVINSNGDRTDLRYAREDSVI-LKIGDKVERHLMDDDLIIFNRQPSLH 376
Query: 65 KMSMMGHRVRVLPWSTFRMNL 85
KMSMMGHRV+V+P+STFR+NL
Sbjct: 377 KMSMMGHRVKVMPYSTFRLNL 397
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 404 KLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 561
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 95/111 (85%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMMGHR+RV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHIVDGDVILFNRQPSLHKESMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 405 LGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMMGHR+RV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMGHRIRVMPYSTFRLNLSV 492
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1765
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 122/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V G +++PGAKY++R +G RIDLR + + L+ G+KVERH+ GD +IFNR
Sbjct: 406 RLHQYVANGPNEHPGAKYVIRSDGSRIDLRHVKGRNGISLEYGWKVERHLLTGDYIIFNR 465
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV + +
Sbjct: 466 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRGLCM 525
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 526 VPLNIVSPQRNSPLMGIVQDTLAGCYKLCRRDVFLTK 562
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 450 KVERHLLTGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 509
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 510 VPQTEETRAEVRGLCMVPLNIVSPQRNSPLMGIVQDTLAGCYKLCRRDVFL 560
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 67/87 (77%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAKY++R +G RIDLR + + L+ G+KVERH+ GD +IFNRQ
Sbjct: 407 LHQYVANGPNEHPGAKYVIRSDGSRIDLRHVKGRNGISLEYGWKVERHLLTGDYIIFNRQ 466
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGHRVRV+P+STFR+NL +
Sbjct: 467 PSLHKESMMGHRVRVMPYSTFRLNLSV 493
>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
Length = 982
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 268 KIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 325
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 326 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMEGKTFRLNLSVTSPYNADFDGDEMNLHM 385
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + AE+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 386 PQNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 439
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 240 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVANGP 292
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 293 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 352
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQ+ + AE+E I + P+QI+ PQ+N+
Sbjct: 353 KVRVMEGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSIAELEEICMVPKQILGPQSNK 412
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 413 PVMGIVQDTLTGLRFFTVRDAFFD 436
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 286 KLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 343
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ TFR+NL +
Sbjct: 344 LHKMSMMGHKVRVMEGKTFRLNLSV 368
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 127/160 (79%), Gaps = 3/160 (1%)
Query: 86 RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVI 142
R+ LV G PG A+YI+R++G+R+DLRF K S+ L+ GYKVERH+ +GD+V+
Sbjct: 374 RLQRLVENGPHPPPGETGARYIIREDGQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVL 433
Query: 143 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
FNRQP+LHKMS+MGHRVR++P+STFR+NLS T PYNADFDGDEMN+H+PQS ETRAEV+
Sbjct: 434 FNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETRAEVKE 493
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ + P+ I++PQ N+PVM IVQDTL R +TKRD F+ K
Sbjct: 494 LMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFITK 533
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 99/118 (83%)
Query: 235 KRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFD 294
KR + KVERH+ +GD+V+FNRQP+LHKMS+MGHRVR++P+STFR+NLS T PYNADFD
Sbjct: 414 KRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFD 473
Query: 295 GDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
GDEMN+H+PQS ETRAEV+ + + P+ I++PQ N+PVM IVQDTL R +TKRD F+
Sbjct: 474 GDEMNMHLPQSYETRAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFI 531
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GA+YI+R++G+R+DLRF K S+ L+ GYKVERH+ +GD+V+FNRQP+LHKMS+MGHRV
Sbjct: 391 GARYIIREDGQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRV 450
Query: 74 RVLPWSTFRMNLRM 87
R++P+STFR+NL +
Sbjct: 451 RIMPYSTFRLNLSV 464
>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
Length = 988
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 267 KIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 324
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 325 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHM 384
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + +E+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 385 PQNYNSISELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 438
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 239 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVANGP 291
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 292 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 351
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQ+ + +E+E I + P+QI+ PQ+N+
Sbjct: 352 KVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPKQILGPQSNK 411
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 412 PVMGIVQDTLTGLRFFTVRDAFFD 435
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 285 KLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 342
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ TFR+NL +
Sbjct: 343 LHKMSMMGHKVRVMAGKTFRLNLSV 367
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 404 KLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 561
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 405 LGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMAHRVRVMPYSTFRLNLSV 492
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 120/143 (83%)
Query: 100 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 159
GAKYI+R++G+R+DLRF K S+ L+ GY+VERH+++ D+V+FNRQP+LHKMS+MGHRV
Sbjct: 359 GAKYIIREDGQRLDLRFLKKASEKKLEFGYRVERHMKNDDVVLFNRQPSLHKMSIMGHRV 418
Query: 160 RVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPV 219
R++P+STFRMN+S T PYNADFDGDEMN+H+PQS ETRAEV + + P+ I++PQ N+PV
Sbjct: 419 RIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSYETRAEVAELMMVPKMIVSPQANKPV 478
Query: 220 MGIVQDTLTAVRKMTKRDVFLDK 242
M IVQDTL RKMT R+ F+ K
Sbjct: 479 MAIVQDTLLGCRKMTSRETFIKK 501
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 98/118 (83%)
Query: 235 KRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFD 294
K+ F +VERH+++ D+V+FNRQP+LHKMS+MGHRVR++P+STFRMN+S T PYNADFD
Sbjct: 382 KKLEFGYRVERHMKNDDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFD 441
Query: 295 GDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
GDEMN+H+PQS ETRAEV + + P+ I++PQ N+PVM IVQDTL RKMT R+ F+
Sbjct: 442 GDEMNMHLPQSYETRAEVAELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFI 499
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GAKYI+R++G+R+DLRF K S+ L+ GY+VERH+++ D+V+FNRQP+LHKMS+MGHRV
Sbjct: 359 GAKYIIREDGQRLDLRFLKKASEKKLEFGYRVERHMKNDDVVLFNRQPSLHKMSIMGHRV 418
Query: 74 RVLPWSTFRMNLRM 87
R++P+STFRMN+ +
Sbjct: 419 RIMPYSTFRMNISV 432
>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
Length = 878
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 125/157 (79%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RG AKY++R+N +RIDL++ K + L+ G KVER+IRDGDLV+ NR
Sbjct: 382 KMQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDKVERNIRDGDLVVVNR 434
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+H PQS+ETR+EVENI +
Sbjct: 435 QPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQSLETRSEVENILL 494
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL K
Sbjct: 495 TPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQK 531
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 124/179 (69%), Gaps = 15/179 (8%)
Query: 187 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ--DTLTAVR--------KMTKR 236
NL + Q R +N+ T +I+TP N + +VQ + +R K K+
Sbjct: 353 NLRIDQVGVPRIIAQNM--TFPEIVTPVNIEKMQELVQRGEAKYLIRENADRIDLKYVKK 410
Query: 237 DVFL---DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADF 293
+ L DKVER+IRDGDLV+ NRQP+L K MMGHRV+VLPW + R+N SC SPYNA+F
Sbjct: 411 NPVLEIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANF 470
Query: 294 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
DGDEMN+H PQS+ETR+EVENI +TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL
Sbjct: 471 DGDEMNMHFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFL 529
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 7/84 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RG AKY++R+N +RIDL++ K + L+ G KVER+IRDGDLV+ NRQ
Sbjct: 383 MQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDKVERNIRDGDLVVVNRQ 435
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+L K MMGHRV+VLPW + R+N
Sbjct: 436 PSLRKEDMMGHRVKVLPWPSIRLN 459
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 410 KLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFN 469
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 470 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 529
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 530 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 567
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 455 RVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 514
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 515 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 565
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 411 LGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNR 470
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 471 QPSLHKESMMAHRVRVMPYSTFRLNLSV 498
>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
Length = 974
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 253 KIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 310
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 311 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHM 370
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + +E+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 371 PQNYNSISELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 424
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 225 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVANGP 277
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 278 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 337
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQ+ + +E+E I + P+QI+ PQ+N+
Sbjct: 338 KVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPKQILGPQSNK 397
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 398 PVMGIVQDTLTGLRFFTVRDAFFD 421
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 271 KLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 328
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ TFR+NL +
Sbjct: 329 LHKMSMMGHKVRVMAGKTFRLNLSV 353
>gi|125657570|gb|ABN48848.1| RNA polymerase II largest subunit [Nonionella labradorica]
Length = 496
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + NL RM +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI
Sbjct: 304 PERVTKFNLHRMKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHI 363
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
+GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHVPQS
Sbjct: 364 CNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHVPQSEN 423
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
RAE+ + P QI+TPQ N PVMGIVQD L K T+RD F + E
Sbjct: 424 ARAELIELCKVPTQIVTPQRNAPVMGIVQDALLGTMKFTRRDQFFTREE 472
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 86/110 (78%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI +GD+V+FNRQP+LHKMSMM H V +LPWSTFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 359 VERHICNGDIVLFNRQPSLHKMSMMAHHVVILPWSTFRINLSVTSPYNADFDGDEMNLHV 418
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAE+ + P QI+TPQ N PVMGIVQD L K T+RD F
Sbjct: 419 PQSENARAELIELCKVPTQIVTPQRNAPVMGIVQDALLGTMKFTRRDQFF 468
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI +GD+V+FNRQ
Sbjct: 315 MKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHICNGDIVLFNRQ 374
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H V +LPWSTFR+NL +
Sbjct: 375 PSLHKMSMMAHHVVILPWSTFRINLSV 401
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FN
Sbjct: 404 KLGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P QI++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 MVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 561
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHIVDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P QI++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ ELV G +PGA+Y++R GERIDLR H + LQ G++VERHI DGD+++FNR
Sbjct: 405 LGELVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMAHRVRVMPYSTFRLNLSV 492
>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
Length = 982
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 121/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 302 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXX 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 362 XXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 422 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 458
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 85/111 (76%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 346 KVERHIVDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 406 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 456
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 65/87 (74%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 303 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXXX 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 363 XXXHKESMMGHRVRVMPYSTFRLNLSV 389
>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
Length = 939
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 253 KIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 310
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 311 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHM 370
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + +E+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 371 PQNYNSISELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 424
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 225 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVANGP 277
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 278 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 337
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQ+ + +E+E I + P+QI+ PQ+N+
Sbjct: 338 KVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPKQILGPQSNK 397
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 398 PVMGIVQDTLTGLRFFTVRDAFFD 421
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 271 KLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 328
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ TFR+NL +
Sbjct: 329 LHKMSMMGHKVRVMAGKTFRLNLSV 353
>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
Length = 974
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 253 KIHTFPEKITPFNIEKLEKLVSNGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 310
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 311 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMDGKTFRLNLSVTSPYNADFDGDEMNLHM 370
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + +E+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 371 PQNYNSISELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 424
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 225 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVSNGP 277
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 278 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 337
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+NLS TSPYNADFDGDEMNLH+PQ+ + +E+E I + P+QI+ PQ+N+
Sbjct: 338 KVRVMDGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPKQILGPQSNK 397
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 398 PVMGIVQDTLTGLRFFTVRDAFFD 421
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 271 KLVSNGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 328
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ TFR+NL +
Sbjct: 329 LHKMSMMGHKVRVMDGKTFRLNLSV 353
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 128/174 (73%), Gaps = 5/174 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M LV G ++YPGAKYI R +G +++L F SD+HL G KV RH+ DGD VIFNR
Sbjct: 373 KMRRLVMNGPNEYPGAKYIERLDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNR 432
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRV+V+ +S+FR+NLSCTSPYNADFDGDEMNLHVPQS + RAEV + +
Sbjct: 433 QPSLHKMSIMGHRVKVMRYSSFRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMM 492
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK-----VERHIRDGDLVI 254
PR I++PQ N+PVMGIVQDTL T+RD F++K + H R D VI
Sbjct: 493 VPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDTFMEKDLVMNLLLHFRGWDGVI 546
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
+KV RH+ DGD VIFNRQP+LHKMS+MGHRV+V+ +S+FR+NLSCTSPYNADFDGDEMNL
Sbjct: 416 EKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSFRLNLSCTSPYNADFDGDEMNL 475
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS + RAEV + + PR I++PQ N+PVMGIVQDTL T+RD F++
Sbjct: 476 HVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDTFME 528
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LV G ++YPGAKYI R +G +++L F SD+HL G KV RH+ DGD VIFNRQ
Sbjct: 374 MRRLVMNGPNEYPGAKYIERLDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQ 433
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGHRV+V+ +S+FR+NL
Sbjct: 434 PSLHKMSIMGHRVKVMRYSSFRLNL 458
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 121/143 (84%)
Query: 100 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 159
GA+YI+R++G+R+DLRF K S+ L+ GYKVERH+ +GD+V+FNRQP+LHKMS+MGHRV
Sbjct: 411 GARYIIREDGQRLDLRFLKKASEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRV 470
Query: 160 RVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPV 219
R++P+STFR+NLS T PYNADFDGDEMN+H+PQS ET+AEV+ + + P+ I++PQ N+PV
Sbjct: 471 RIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETKAEVKELMMVPKMIVSPQANKPV 530
Query: 220 MGIVQDTLTAVRKMTKRDVFLDK 242
M IVQDTL R +TKRD F+ K
Sbjct: 531 MAIVQDTLLGCRLITKRDTFIPK 553
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 99/118 (83%)
Query: 235 KRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFD 294
KR + KVERH+ +GD+V+FNRQP+LHKMS+MGHRVR++P+STFR+NLS T PYNADFD
Sbjct: 434 KRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFD 493
Query: 295 GDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
GDEMN+H+PQS ET+AEV+ + + P+ I++PQ N+PVM IVQDTL R +TKRD F+
Sbjct: 494 GDEMNMHLPQSYETKAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFI 551
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 66/74 (89%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRV 73
GA+YI+R++G+R+DLRF K S+ L+ GYKVERH+ +GD+V+FNRQP+LHKMS+MGHRV
Sbjct: 411 GARYIIREDGQRLDLRFLKKASEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRV 470
Query: 74 RVLPWSTFRMNLRM 87
R++P+STFR+NL +
Sbjct: 471 RIMPYSTFRLNLSV 484
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 121/157 (77%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RG AKY++R+NG+R DL++ K L L G K+ER+IRDGDLV+ NR
Sbjct: 369 KMQELVQRGE-----AKYLIRENGDRFDLKYVKKNPVLEL--GDKLERNIRDGDLVVLNR 421
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMNLHVPQSMETRAE E I +
Sbjct: 422 QPALRKEHMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNLHVPQSMETRAEAEQILI 481
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
T R IITPQ N+PVMGIVQDTL K+TKRDVFL+K
Sbjct: 482 TSRLIITPQANKPVMGIVQDTLVGAYKLTKRDVFLEK 518
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
DK+ER+IRDGDLV+ NRQP L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMNL
Sbjct: 405 DKLERNIRDGDLVVLNRQPALRKEHMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNL 464
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQSMETRAE E I +T R IITPQ N+PVMGIVQDTL K+TKRDVFL+
Sbjct: 465 HVPQSMETRAEAEQILITSRLIITPQANKPVMGIVQDTLVGAYKLTKRDVFLE 517
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RG AKY++R+NG+R DL++ K L L G K+ER+IRDGDLV+ NRQ
Sbjct: 370 MQELVQRGE-----AKYLIRENGDRFDLKYVKKNPVLEL--GDKLERNIRDGDLVVLNRQ 422
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P L K MMGHRV+VLPW + R+N
Sbjct: 423 PALRKEHMMGHRVKVLPWPSIRLN 446
>gi|329132885|gb|AEB78333.1| RNA polymerase II largest subunit [Diplonema sp. ATCC 50224]
Length = 1010
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 122/153 (79%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LV G +YPGAK+I+R++G RI+L F K S+L LQ GY VERH+ D+V+FNRQPTL
Sbjct: 309 LVANGPDKYPGAKFIIREDGTRINLAFRRKDSELFLQPGYIVERHVLTNDVVLFNRQPTL 368
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
H+MSMMGHR RV+P+ TFR+NLS TSPYNADFDGDEMNLHVPQS+ +++E++ + P+
Sbjct: 369 HRMSMMGHRARVMPFCTFRLNLSATSPYNADFDGDEMNLHVPQSVLSKSELQEFMMVPKN 428
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
II+P++N PVMGIVQD+L + +TKR FLDK
Sbjct: 429 IISPKSNSPVMGIVQDSLLGIHLLTKRSTFLDK 461
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D+V+FNRQPTLH+MSMMGHR RV+P+ TFR+NLS TSPYNADFDGDEMNLHV
Sbjct: 350 VERHVLTNDVVLFNRQPTLHRMSMMGHRARVMPFCTFRLNLSATSPYNADFDGDEMNLHV 409
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ +++E++ + P+ II+P++N PVMGIVQD+L + +TKR FLD
Sbjct: 410 PQSVLSKSELQEFMMVPKNIISPKSNSPVMGIVQDSLLGIHLLTKRSTFLD 460
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +YPGAK+I+R++G RI+L F K S+L LQ GY VERH+ D+V+FNRQPTL
Sbjct: 309 LVANGPDKYPGAKFIIREDGTRINLAFRRKDSELFLQPGYIVERHVLTNDVVLFNRQPTL 368
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
H+MSMMGHR RV+P+ TFR+NL
Sbjct: 369 HRMSMMGHRARVMPFCTFRLNL 390
>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
Length = 989
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 128/174 (73%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY
Sbjct: 268 KIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYI 325
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++GD ++FNRQP+LHKMSMMGH+VRV+ T R+NLS TSPYNADFDGDEMNLH+
Sbjct: 326 VERHMQNGDTILFNRQPSLHKMSMMGHKVRVMEGKTLRLNLSVTSPYNADFDGDEMNLHM 385
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ + AE+E I + P+QI+ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 386 PQNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNE 439
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 126/204 (61%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 240 RVDFSARSVITADANISLEEVGVP------LEVAKIHTFPEKI-TPFNIEKLEKLVANGP 292
Query: 226 -----TLTAVRKMTKR--------DVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R +R D+ L++ VERH+++GD ++FNRQP+LHKMSMMGH
Sbjct: 293 NEYPGANYVIRTDGQRIDLNFNRGDIKLEEGYIVERHMQNGDTILFNRQPSLHKMSMMGH 352
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ T R+NLS TSPYNADFDGDEMNLH+PQ+ + AE+E I + P+QI+ PQ+N+
Sbjct: 353 KVRVMEGKTLRLNLSVTSPYNADFDGDEMNLHMPQNYNSIAELEEICMVPKQILGPQSNK 412
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 413 PVMGIVQDTLTGLRFFTVRDAFFD 436
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F+ D+ L+ GY VERH+++GD ++FNRQP+
Sbjct: 286 KLVANGPNEYPGANYVIRTDGQRIDLNFNR--GDIKLEEGYIVERHMQNGDTILFNRQPS 343
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+ T R+NL +
Sbjct: 344 LHKMSMMGHKVRVMEGKTLRLNLSV 368
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 294 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 353
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 354 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 413
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 414 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 451
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 339 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 295 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 354
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 355 QPSLHKESMMSHRVRVMPYSTFRLNLSV 382
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
Length = 1452
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/155 (55%), Positives = 130/155 (83%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV+ G ++YPGAKY+++++G R+DLR+ K S+++L+ GY+VERH+RDGD+++FNRQ
Sbjct: 368 MKQLVQNGPTRYPGAKYVIKNDGTRLDLRYVKKLSNVYLEIGYQVERHLRDGDVILFNRQ 427
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMSMM H V+++ +STFRMNLS T+PYNADFDGDEMNLH+PQ++E+ +E+ N+
Sbjct: 428 PSLHKMSMMSHIVKIMDYSTFRMNLSATTPYNADFDGDEMNLHLPQTLESTSELLNLLTV 487
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
+ I++ Q+N+PV+GIVQD+L +T++DVF+D
Sbjct: 488 SKCILSQQSNKPVIGIVQDSLIGAFLLTQKDVFMD 522
Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats.
Identities = 71/130 (54%), Positives = 106/130 (81%), Gaps = 5/130 (3%)
Query: 227 LTAVRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 283
L V+K++ +V+L+ +VERH+RDGD+++FNRQP+LHKMSMM H V+++ +STFRMNL
Sbjct: 395 LRYVKKLS--NVYLEIGYQVERHLRDGDVILFNRQPSLHKMSMMSHIVKIMDYSTFRMNL 452
Query: 284 SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVR 343
S T+PYNADFDGDEMNLH+PQ++E+ +E+ N+ + I++ Q+N+PV+GIVQD+L
Sbjct: 453 SATTPYNADFDGDEMNLHLPQTLESTSELLNLLTVSKCILSQQSNKPVIGIVQDSLIGAF 512
Query: 344 KMTKRDVFLD 353
+T++DVF+D
Sbjct: 513 LLTQKDVFMD 522
Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 74/85 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV+ G ++YPGAKY+++++G R+DLR+ K S+++L+ GY+VERH+RDGD+++FNRQ
Sbjct: 368 MKQLVQNGPTRYPGAKYVIKNDGTRLDLRYVKKLSNVYLEIGYQVERHLRDGDVILFNRQ 427
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMM H V+++ +STFRMNL
Sbjct: 428 PSLHKMSMMSHIVKIMDYSTFRMNL 452
>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium
chlorophanum]
Length = 1011
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 120/157 (76%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DG
Sbjct: 319 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGXXXXXXX 378
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 379 XXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 438
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 439 VPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTK 475
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 84/111 (75%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DG HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 363 KVERHIVDGXXXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 423 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFL 473
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DG
Sbjct: 320 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGXXXXXXXX 379
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 380 XXXHKESMMGHRVRVMPYSTFRLNLSV 406
>gi|120561170|gb|ABM26980.1| RNA polymerase II largest subunit [Nosema granulosis]
Length = 917
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 125/159 (78%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G ++YPGA Y++R G+RIDL+F+ D+ L+ GY VERH++DGD+V+FNR
Sbjct: 240 RLEKLVANGPNEYPGANYVIRTXGQRIDLKFNR--GDIKLEEGYVVERHMQDGDVVLFNR 297
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHRV+V+ T R+NLS TSPYNADFDGDEMNLH+PQS T +E+E I +
Sbjct: 298 QPSLHKMSMMGHRVKVMXGKTSRLNLSVTSPYNADFDGDEMNLHMPQSYNTISELEEICM 357
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+Q++ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 358 VSKQVLGPQSNKPVMGIVQDTLTGLRFFTIRDAFFDKRE 396
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-- 225
R++ S S AD + + VP EV IH P +I TP N + +V +
Sbjct: 197 RVDFSARSVITADANISLEXVGVPY------EVAKIHTFPEKI-TPXNIERLEKLVANGP 249
Query: 226 -----TLTAVR--------KMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
+R K + D+ L++ VERH++DGD+V+FNRQP+LHKMSMMGH
Sbjct: 250 NEYPGANYVIRTXGQRIDLKFNRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMGH 309
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RV+V+ T R+NLS TSPYNADFDGDEMNLH+PQS T +E+E I + +Q++ PQ+N+
Sbjct: 310 RVKVMXGKTSRLNLSVTSPYNADFDGDEMNLHMPQSYNTISELEEICMVSKQVLGPQSNK 369
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 370 PVMGIVQDTLTGLRFFTIRDAFFD 393
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R G+RIDL+F+ D+ L+ GY VERH++DGD+V+FNRQP+
Sbjct: 243 KLVANGPNEYPGANYVIRTXGQRIDLKFNR--GDIKLEEGYVVERHMQDGDVVLFNRQPS 300
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+V+ T R+NL +
Sbjct: 301 LHKMSMMGHRVKVMXGKTSRLNLSV 325
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 319 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 378
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 379 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 438
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 439 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 476
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 364 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 423
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 424 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 474
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 320 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 379
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 380 QPSLHKESMMSHRVRVMPYSTFRLNLSV 407
>gi|321468706|gb|EFX79690.1| hypothetical protein DAPPUDRAFT_244675 [Daphnia pulex]
Length = 475
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/156 (64%), Positives = 123/156 (78%), Gaps = 7/156 (4%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M ELV+RG AKY++R+N +RIDL++ K + L+ G VER+IRDGDLV+ NRQ
Sbjct: 1 MQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDTVERNIRDGDLVVLNRQ 53
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+H PQ +ETR+EVENI +T
Sbjct: 54 PSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQKLETRSEVENILLT 113
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQIITPQ N+PVMGIVQDTL K+TKRDVFL+K
Sbjct: 114 PRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLEK 149
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VER+IRDGDLV+ NRQP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+
Sbjct: 36 DTVERNIRDGDLVVLNRQPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNM 95
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H PQ +ETR+EVENI +TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL+
Sbjct: 96 HFPQKLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLE 148
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 7/84 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RG AKY++R+N +RIDL++ K + L+ G VER+IRDGDLV+ NRQ
Sbjct: 1 MQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDTVERNIRDGDLVVLNRQ 53
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+L K MMGHRV+VLPW + R+N
Sbjct: 54 PSLRKEDMMGHRVKVLPWPSIRLN 77
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 523 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 560
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 558
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 523 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 560
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 558
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 523 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 560
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 558
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 523 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 560
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 558
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|321451593|gb|EFX63195.1| hypothetical protein DAPPUDRAFT_335810 [Daphnia pulex]
Length = 713
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 124/157 (78%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV+RG AKY++R+N +RIDL++ K + L+ G VER+IRDGDLV+ NR
Sbjct: 381 KMQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDTVERNIRDGDLVVLNR 433
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+H PQ +ETR+EVENI +
Sbjct: 434 QPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNMHFPQKLETRSEVENILL 493
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL+K
Sbjct: 494 TPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLEK 530
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VER+IRDGDLV+ NRQP+L K MMGHRV+VLPW + R+N SC SPYNA+FDGDEMN+
Sbjct: 417 DTVERNIRDGDLVVLNRQPSLRKEDMMGHRVKVLPWPSIRLNPSCASPYNANFDGDEMNM 476
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H PQ +ETR+EVENI +TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL+
Sbjct: 477 HFPQKLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLE 529
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 7/84 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV+RG AKY++R+N +RIDL++ K + L+ G VER+IRDGDLV+ NRQ
Sbjct: 382 MQELVQRGE-----AKYLIRENADRIDLKYVKK--NPVLEIGDTVERNIRDGDLVVLNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+L K MMGHRV+VLPW + R+N
Sbjct: 435 PSLRKEDMMGHRVKVLPWPSIRLN 458
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
P131]
Length = 1745
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 120/157 (76%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V G +++PGAKYIVR +G RIDLR L+ G KVERH+ GD +IFNR
Sbjct: 389 RLHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNR 448
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 449 QPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 508
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 509 VPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTK 545
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 94/114 (82%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
+ KVERH+ GD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEM
Sbjct: 430 YGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEM 489
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
NLHVPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 490 NLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFL 543
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAKYIVR +G RIDLR L+ G KVERH+ GD +IFNRQ
Sbjct: 390 LHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQ 449
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGH+VRV+P+STFR+NL +
Sbjct: 450 PSLHKESMMGHQVRVMPYSTFRLNLSV 476
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 120/157 (76%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V G +++PGAKYIVR +G RIDLR L+ G KVERH+ GD +IFNR
Sbjct: 401 RLHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAEV+ + +
Sbjct: 461 QPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL K+ +RDVFL K
Sbjct: 521 VPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTK 557
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 94/114 (82%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
+ KVERH+ GD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEM
Sbjct: 442 YGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEM 501
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
NLHVPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 502 NLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFL 555
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAKYIVR +G RIDLR L+ G KVERH+ GD +IFNRQ
Sbjct: 402 LHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHK SMMGH+VRV+P+STFR+NL +
Sbjct: 462 PSLHKESMMGHQVRVMPYSTFRLNLSV 488
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD+++FN
Sbjct: 356 KLGQLVDNGPDIHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFN 415
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 416 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLC 475
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 476 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 513
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 401 KVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 460
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 461 VPQSEEARAELSQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 511
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G+KVERH+ DGD+++FNR
Sbjct: 357 LGQLVDNGPDIHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNR 416
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 417 QPSLHKESMMAHRVRVMPYSTFRLNLSV 444
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 119/154 (77%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G ++YPGA ++R NG+ + L+ + L G +VERH+ DGD +IFNRQP+
Sbjct: 326 KLVANGTNEYPGANRVIRANGDIVSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPS 385
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLH PQS ETRAE+ I PR
Sbjct: 386 LHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPR 445
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QII+P++N+PVMGIVQDTL +RK T RD FL +
Sbjct: 446 QIISPKHNQPVMGIVQDTLCGIRKFTIRDNFLSR 479
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D+VERH+ DGD +IFNRQP+LHKMSMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNL
Sbjct: 366 DRVERHLVDGDYIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNL 425
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQS ETRAE+ I PRQII+P++N+PVMGIVQDTL +RK T RD FL
Sbjct: 426 HAPQSYETRAEIMEIMRVPRQIISPKHNQPVMGIVQDTLCGIRKFTIRDNFL 477
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA ++R NG+ + L+ + L G +VERH+ DGD +IFNRQP+
Sbjct: 326 KLVANGTNEYPGANRVIRANGDIVSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGH+VRV+P+STFR+NL +
Sbjct: 386 LHKMSMMGHKVRVMPFSTFRLNLSV 410
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 132/174 (75%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ R+ +LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYV 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL+
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLN 511
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYVVERHMQSGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMGNKTFRLNLSV 443
>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
Length = 764
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 125/159 (78%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LV G + YPGA Y++R++G+RIDL+F+ D+ L+ GY VERH++DGD+V+FNR
Sbjct: 275 RLEKLVENGPNVYPGANYVIRNDGQRIDLKFNR--GDIKLEEGYVVERHMQDGDIVLFNR 332
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM H+VRV+ TFR+N S TSPYNADFDGDEMNLH+PQS T +E++ I +
Sbjct: 333 QPSLHKMSMMAHKVRVMGGKTFRLNSSVTSPYNADFDGDEMNLHMPQSFNTISELQEICM 392
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+Q++ PQ+N+PVMGIVQDTLT +R T RD F DK E
Sbjct: 393 VSKQVLGPQSNKPVMGIVQDTLTGLRLFTLRDAFFDKNE 431
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 25/204 (12%)
Query: 168 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ--- 224
R++ S S AD + + VP EV IH P +I TP N + + +V+
Sbjct: 232 RVDFSARSVITADANISLEEVGVP------IEVAKIHTFPEKI-TPFNVQRLEKLVENGP 284
Query: 225 ------------DTLTAVRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGH 269
D K + D+ L++ VERH++DGD+V+FNRQP+LHKMSMM H
Sbjct: 285 NVYPGANYVIRNDGQRIDLKFNRGDIKLEEGYVVERHMQDGDIVLFNRQPSLHKMSMMAH 344
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRV+ TFR+N S TSPYNADFDGDEMNLH+PQS T +E++ I + +Q++ PQ+N+
Sbjct: 345 KVRVMGGKTFRLNSSVTSPYNADFDGDEMNLHMPQSFNTISELQEICMVSKQVLGPQSNK 404
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
PVMGIVQDTLT +R T RD F D
Sbjct: 405 PVMGIVQDTLTGLRLFTLRDAFFD 428
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA Y++R++G+RIDL+F+ D+ L+ GY VERH++DGD+V+FNRQP+
Sbjct: 278 KLVENGPNVYPGANYVIRNDGQRIDLKFNR--GDIKLEEGYVVERHMQDGDIVLFNRQPS 335
Query: 63 LHKMSMMGHRVRVLPWSTFRMN 84
LHKMSMM H+VRV+ TFR+N
Sbjct: 336 LHKMSMMAHKVRVMGGKTFRLN 357
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 132/174 (75%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ R+ +LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYV 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL+
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLN 511
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYVVERHMQSGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMGNKTFRLNLSV 443
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 122/153 (79%)
Query: 90 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 149
LV G +YPGAKYI+R + +ID+ + SD+HL+ GYKVERH+R+ D V+FNRQP+L
Sbjct: 385 LVENGPHRYPGAKYIIRHDERQIDIGILNERSDVHLEYGYKVERHLRNDDYVLFNRQPSL 444
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMS+MGHR ++LP+STFR+NLS TSPYNADFDGDEMN+ VPQS E+ AEV+ I P Q
Sbjct: 445 HKMSIMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMFVPQSYESMAEVKEIMAVPNQ 504
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
II+PQ+N+PVMGIVQD+L + T++D F+D+
Sbjct: 505 IISPQSNKPVMGIVQDSLLGIMLFTRKDNFIDR 537
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 99/122 (81%), Gaps = 3/122 (2%)
Query: 235 KRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
+ DV L+ KVERH+R+ D V+FNRQP+LHKMS+MGHR ++LP+STFR+NLS TSPYNA
Sbjct: 415 RSDVHLEYGYKVERHLRNDDYVLFNRQPSLHKMSIMGHRAKILPFSTFRLNLSVTSPYNA 474
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMN+ VPQS E+ AEV+ I P QII+PQ+N+PVMGIVQD+L + T++D F
Sbjct: 475 DFDGDEMNMFVPQSYESMAEVKEIMAVPNQIISPQSNKPVMGIVQDSLLGIMLFTRKDNF 534
Query: 352 LD 353
+D
Sbjct: 535 ID 536
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 67/84 (79%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +YPGAKYI+R + +ID+ + SD+HL+ GYKVERH+R+ D V+FNRQP+L
Sbjct: 385 LVENGPHRYPGAKYIIRHDERQIDIGILNERSDVHLEYGYKVERHLRNDDYVLFNRQPSL 444
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMS+MGHR ++LP+STFR+NL +
Sbjct: 445 HKMSIMGHRAKILPFSTFRLNLSV 468
>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
Length = 1010
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 301 RTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 360
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 361 VERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 420
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 421 PQSEETRAELSQLCMVPLDIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 472
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 88/111 (79%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 360 KVERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 420 VPQSEETRAELSQLCMVPLDIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 470
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP+
Sbjct: 319 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPS 378
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
L RVRV+P+STFR+NL +
Sbjct: 379 LXXXXXXXXRVRVMPYSTFRLNLSV 403
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ L+ G +PGA+Y++R GERIDLR H + LQ G+KVERHI+DGD+++FN
Sbjct: 314 KLGTLIDNGPDVHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWKVERHIQDGDVILFN 373
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE++ +
Sbjct: 374 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELKELC 433
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 434 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 471
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 359 KVERHIQDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 419 VPQSEEARAELKELCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 469
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNRQPT 62
L+ G +PGA+Y++R GERIDLR H + LQ G+KVERHI+DGD+++FNRQP+
Sbjct: 318 LIDNGPDVHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWKVERHIQDGDVILFNRQPS 377
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMM HRVRV+P+STFR+NL +
Sbjct: 378 LHKESMMAHRVRVMPYSTFRLNLSV 402
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 204 bits (520), Expect = 4e-50, Method: Composition-based stats.
Identities = 92/163 (56%), Positives = 130/163 (79%), Gaps = 1/163 (0%)
Query: 79 STFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 138
S F M +M ++V+ G +PGAKYI+R++G RIDLRF S++ L+ G ++ERH++DG
Sbjct: 368 SEFNMK-KMKKIVQNGPIHHPGAKYIIRNDGSRIDLRFVKNLSEIKLEIGNQIERHLQDG 426
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
DLV+FNRQP+LHKMSMMGH V+++ +STFRMNLS TSPYNADFDGDEMNLH+PQ++E ++
Sbjct: 427 DLVLFNRQPSLHKMSMMGHIVKIMHFSTFRMNLSATSPYNADFDGDEMNLHLPQTLEGKS 486
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
E+ N+ + P II+ Q N+PV+GIVQD+L +++R++FLD
Sbjct: 487 ELLNLLMLPNCIISQQGNKPVIGIVQDSLLGSFLLSQRNIFLD 529
Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/113 (61%), Positives = 97/113 (85%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
+++ERH++DGDLV+FNRQP+LHKMSMMGH V+++ +STFRMNLS TSPYNADFDGDEMNL
Sbjct: 417 NQIERHLQDGDLVLFNRQPSLHKMSMMGHIVKIMHFSTFRMNLSATSPYNADFDGDEMNL 476
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQ++E ++E+ N+ + P II+ Q N+PV+GIVQD+L +++R++FLD
Sbjct: 477 HLPQTLEGKSELLNLLMLPNCIISQQGNKPVIGIVQDSLLGSFLLSQRNIFLD 529
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 70/85 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ++V+ G +PGAKYI+R++G RIDLRF S++ L+ G ++ERH++DGDLV+FNRQ
Sbjct: 375 MKKIVQNGPIHHPGAKYIIRNDGSRIDLRFVKNLSEIKLEIGNQIERHLQDGDLVLFNRQ 434
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMMGH V+++ +STFRMNL
Sbjct: 435 PSLHKMSMMGHIVKIMHFSTFRMNL 459
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 132/174 (75%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ R+ +LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIKLEEGYV 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K D+ L++ VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNA
Sbjct: 390 KSDIKLEEGYVVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD F
Sbjct: 450 DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509
Query: 352 LD 353
L+
Sbjct: 510 LN 511
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIKLEEGYVVERHMQTGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMDDKTFRLNLSV 443
>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
Length = 1001
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 126/170 (74%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ + LV+ G + +PGA+Y++RD GERIDLR H S++ L G+K
Sbjct: 299 RTLTFPETVTRFNVEKLKVLVKNGPNVHPGARYVIRDTGERIDLRHHKNLSEMTLGWGWK 358
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 359 VERHIQDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 418
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 419 PQSQESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 468
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 90/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 358 KVERHIQDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 417
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 418 VPQSQESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 468
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 64/84 (76%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV+ G + +PGA+Y++RD GERIDLR H S++ L G+KVERHI+DGD+++FNRQP+L
Sbjct: 318 LVKNGPNVHPGARYVIRDTGERIDLRHHKNLSEMTLGWGWKVERHIQDGDVILFNRQPSL 377
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 378 XXXXXXXXRVRVMPYSTFRLNLSV 401
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 132/174 (75%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ R+ +LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIKLEEGYV 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K D+ L++ VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNA
Sbjct: 390 KSDIKLEEGYVVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD F
Sbjct: 450 DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509
Query: 352 LD 353
L+
Sbjct: 510 LN 511
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIKLEEGYVVERHMQTGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMDDKTFRLNLSV 443
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FN
Sbjct: 404 KLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 561
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FNR
Sbjct: 405 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMAHRVRVMPYSTFRLNLSV 492
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 119/154 (77%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV G +YP AKYI RD+G +++L + +D+ L+ GYKV RHI +GD ++FNRQ
Sbjct: 314 MQQLVENGPDEYPDAKYIQRDDGYQVNLAYVRNRADVQLEIGYKVVRHITNGDFIVFNRQ 373
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ TRAEV + +
Sbjct: 374 PSLHKMSIMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTHATRAEVMELMMV 433
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PR I++PQ N+PVMGIVQDTL T RD FL
Sbjct: 434 PRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDTFL 467
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 91/111 (81%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KV RHI +GD ++FNRQP+LHKMS+MGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 357 KVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 416
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ TRAEV + + PR I++PQ N+PVMGIVQDTL T RD FL
Sbjct: 417 VPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDTFL 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 68/87 (78%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +YP AKYI RD+G +++L + +D+ L+ GYKV RHI +GD ++FNRQ
Sbjct: 314 MQQLVENGPDEYPDAKYIQRDDGYQVNLAYVRNRADVQLEIGYKVVRHITNGDFIVFNRQ 373
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHR++V+P+STFR+NL +
Sbjct: 374 PSLHKMSIMGHRIKVMPYSTFRLNLSV 400
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FN
Sbjct: 404 KLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 561
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FNR
Sbjct: 405 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMAHRVRVMPYSTFRLNLSV 492
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N ++ +LV G ++PGA+YI+R+ GERIDLRFH + + L+ G+K
Sbjct: 301 RTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWK 360
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 361 VERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 420
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 421 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 474
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 88/111 (79%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 360 KVERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 419
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 420 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 470
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 64/85 (75%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++PGA+YI+R+ GERIDLRFH + + L+ G+KVERHI DGD+++FNRQP+
Sbjct: 319 QLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWKVERHIMDGDVILFNRQPS 378
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
L RVRV+P+STFR+NL +
Sbjct: 379 LXXXXXXXXRVRVMPYSTFRLNLSV 403
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
++ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FN
Sbjct: 404 KLGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFN 463
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 464 RQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 523
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 524 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 561
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 449 RVERHLMDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 508
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 509 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 559
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA+Y++R +GERIDLR H + LQ G++VERH+ DGD+++FNR
Sbjct: 405 LGQLVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNR 464
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 465 QPSLHKESMMAHRVRVMPYSTFRLNLSV 492
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 130/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
+V P N+ E LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KVHTFPEKVTSFNIDKLEKLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIRLEEGYI 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 235 KRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K D+ L++ VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNA
Sbjct: 390 KSDIRLEEGYIVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD F
Sbjct: 450 DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509
Query: 352 LD 353
L+
Sbjct: 510 LN 511
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRTGPNEHPGANYVLRSDGQKIDLNFNK--SDIRLEEGYIVERHMQTGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMDDKTFRLNLSV 443
>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
Length = 989
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 118/157 (75%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 309 KLHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXX 368
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDG EMNLHVPQS ETRAEV + +
Sbjct: 369 XXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGYEMNLHVPQSEETRAEVNQLCM 428
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + M +RDVFL K
Sbjct: 429 VPLNIVSPQRNGPLMGIVQDTLCGIYNMCRRDVFLTK 465
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 83/111 (74%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD HK SMMGHRVRV+P+STFR+NLS TSPYNADFDG EMNLH
Sbjct: 353 KVERHIVDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGYEMNLH 412
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + M +RDVFL
Sbjct: 413 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYNMCRRDVFL 463
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 64/87 (73%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 310 LHQLVKNGPNEHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXXX 369
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 370 XXXHKESMMGHRVRVMPYSTFRLNLSV 396
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA++++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 523 LVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 560
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 92/111 (82%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 558
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA++++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|111278799|gb|ABH09097.1| RNA polymerase II largest subunit [Ramichloridium anceps]
Length = 1002
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 126/170 (74%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+YI+RD GERIDLR H + D+ LQ G+K
Sbjct: 300 RTLTFPETVTPFNLDKLKRLVANGPTEHPGARYIIRDTGERIDLRHHKRTGDVVLQYGWK 359
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+D D+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 360 VERHIQDRDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 419
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 420 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFL 469
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 89/111 (80%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+D D+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 359 KVERHIQDRDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 418
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 419 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFL 469
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+YI+RD GERIDLR H + D+ LQ G+KVERHI+D D+++FNRQP+L
Sbjct: 319 LVANGPTEHPGARYIIRDTGERIDLRHHKRTGDVVLQYGWKVERHIQDRDVILFNRQPSL 378
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 379 XXXXXXXXRVRVMPYSTFRLNLSV 402
>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 1003
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 127/172 (73%), Gaps = 6/172 (3%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ ELV RG +PGA+YI+R+N ERIDLR+H + + L+ G+K
Sbjct: 299 RTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIRENNERIDLRYHKDTAGIALKVGWK 358
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 359 VERHIMDGDVILFNRQPSLXXX-----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 413
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 414 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 465
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 101/150 (67%), Gaps = 11/150 (7%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP+L
Sbjct: 325 MHPGARYIIRENNERIDLRYHKDTAGIALKVGW------KVERHIMDGDVILFNRQPSLX 378
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 379 XX-----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 433
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 434 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 463
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG +PGA+YI+R+N ERIDLR+H + + L+ G+KVERHI DGD+++FNRQP+
Sbjct: 317 ELVTRGPEMHPGARYIIRENNERIDLRYHKDTAGIALKVGWKVERHIMDGDVILFNRQPS 376
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
L RVRV+P+STFR+NL +
Sbjct: 377 LXXX-----RVRVMPYSTFRLNLSV 396
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 130/174 (74%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ E LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPERVTSFNIDKLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYI 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGDKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGDKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ++AE+E + + +QII+PQ+N+PVMGIVQDTLT +R T RD FL+
Sbjct: 461 PQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLN 511
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYIVERHMQSGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMGDKTFRLNLSV 443
>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
Length = 999
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 126/172 (73%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ ELV RG +PGA+YI+R+N ERIDLR+H P+ + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIRENNERIDLRYHKDPAGIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG +PGA+YI+R+N ERIDLR+H P+ + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 ELVTRGPEMHPGARYIIRENNERIDLRYHKDPAGIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 128/157 (81%), Gaps = 3/157 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKP---SDLHLQCGYKVERHIRDGDLVIFNR 145
ELV RG ++PGA IV+D+G +IDLRF + ++ LQ G+KVERH+++ DLV+FNR
Sbjct: 383 ELVERGPYEWPGATSIVQDDGTKIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNR 442
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++++ +
Sbjct: 443 QPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSYETRSEIKHLMM 502
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+QI++PQ NRPV+GIVQD+L + +T++ FL K
Sbjct: 503 VPKQIVSPQGNRPVIGIVQDSLLGLFLLTRKSTFLTK 539
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++ DLV+FNRQP+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 427 KVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 486
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETR+E++++ + P+QI++PQ NRPV+GIVQD+L + +T++ FL
Sbjct: 487 LAQSYETRSEIKHLMMVPKQIVSPQGNRPVIGIVQDSLLGLFLLTRKSTFL 537
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 71/88 (80%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKP---SDLHLQCGYKVERHIRDGDLVIFNR 59
ELV RG ++PGA IV+D+G +IDLRF + ++ LQ G+KVERH+++ DLV+FNR
Sbjct: 383 ELVERGPYEWPGATSIVQDDGTKIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNR 442
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHRV++LP+STFR+NL +
Sbjct: 443 QPSLHKMSIMGHRVKILPYSTFRLNLSV 470
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 122/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
M +L+ RG + +PGAKYI+R + +IDL S+ + G+KVERH+RD D VIFNR
Sbjct: 288 EMRKLIERGPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNR 347
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMS+MGHRV+VLP+STFR+NLS T+PYNADFDGDEMN+HVPQS ET AE++ I
Sbjct: 348 QPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMA 407
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P QI++PQ+N+PVMGIVQD+L V T +D F++K
Sbjct: 408 VPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEK 444
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD D VIFNRQP+LHKMS+MGHRV+VLP+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 332 KVERHLRDNDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMH 391
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ET AE++ I P QI++PQ+N+PVMGIVQD+L V T +D F++
Sbjct: 392 VPQSYETMAEIKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIE 443
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +L+ RG + +PGAKYI+R + +IDL S+ + G+KVERH+RD D VIFNRQ
Sbjct: 289 MRKLIERGPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQ 348
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHRV+VLP+STFR+NL +
Sbjct: 349 PSLHKMSLMGHRVKVLPFSTFRLNLSV 375
>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_b [Homo sapiens]
Length = 1511
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/114 (79%), Positives = 106/114 (92%)
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 85 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 138
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 104/111 (93%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 85 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 135
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 41/43 (95%)
Query: 45 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 67
>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_c [Homo sapiens]
Length = 1549
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/114 (79%), Positives = 106/114 (92%)
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 85 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 138
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 104/111 (93%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 85 PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 135
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 41/43 (95%)
Query: 45 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
VERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 25 VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSV 67
>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 989
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 127/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+K
Sbjct: 298 RTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ NRP+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ NRP+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWKVERHIMDGDIILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 127/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+K
Sbjct: 298 RTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ NRP+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ NRP+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWKVERHIMDGDIILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 125/159 (78%), Gaps = 3/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIF 143
++ ++V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++F
Sbjct: 381 KLVQMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILF 439
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ +
Sbjct: 440 NRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKEL 499
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 500 ALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 538
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 426 KVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 485
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 486 VPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 536
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 3/89 (3%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIFN 58
+ ++V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++FN
Sbjct: 382 LVQMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILFN 440
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RQP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 441 RQPSLHKESMMAHRVRVMPYSTFRLNLSV 469
>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
Length = 1011
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 118/157 (75%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG
Sbjct: 317 KLHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGXXXXXXX 376
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
+K SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 377 XXXXYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 436
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 437 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSK 473
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 84/111 (75%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DG +K SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 361 KVERHIIDGXXXXXXXXXXXYKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 420
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 421 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 471
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD GERIDLR H + ++ LQ G+KVERHI DG
Sbjct: 318 LHQLVKTGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGXXXXXXXX 377
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
+K SMMGHRVRV+P+STFR+NL +
Sbjct: 378 XXXYKESMMGHRVRVMPYSTFRLNLSV 404
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 201 bits (511), Expect = 5e-49, Method: Composition-based stats.
Identities = 89/153 (58%), Positives = 122/153 (79%), Gaps = 2/153 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
ELV G S++PGA Y++R +G+RIDLRF+ SD++LQ GY VERH++DGD+V+FNRQP+
Sbjct: 405 ELVNNGPSKHPGANYVIRTDGQRIDLRFNR--SDVNLQVGYVVERHLKDGDIVLFNRQPS 462
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMM HRVRV+ TFR+NLS T+PYNADFDGDEMNLH PQ + + E+ + +
Sbjct: 463 LHKMSMMAHRVRVMQKKTFRLNLSVTTPYNADFDGDEMNLHAPQGLLSAVELRQLASVTK 522
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
Q+++PQ+N+PVMGIVQD+L VR++T + F++
Sbjct: 523 QVVSPQSNKPVMGIVQDSLIGVRRLTSDNSFIE 555
Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/111 (59%), Positives = 90/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD+V+FNRQP+LHKMSMM HRVRV+ TFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 VERHLKDGDIVLFNRQPSLHKMSMMAHRVRVMQKKTFRLNLSVTTPYNADFDGDEMNLHA 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ + + E+ + +Q+++PQ+N+PVMGIVQD+L VR++T + F++
Sbjct: 505 PQGLLSAVELRQLASVTKQVVSPQSNKPVMGIVQDSLIGVRRLTSDNSFIE 555
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/83 (63%), Positives = 69/83 (83%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G S++PGA Y++R +G+RIDLRF+ SD++LQ GY VERH++DGD+V+FNRQP+
Sbjct: 405 ELVNNGPSKHPGANYVIRTDGQRIDLRFNR--SDVNLQVGYVVERHLKDGDIVLFNRQPS 462
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRVRV+ TFR+NL
Sbjct: 463 LHKMSMMAHRVRVMQKKTFRLNL 485
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 129/156 (82%), Gaps = 2/156 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFNRQ 146
ELV+RG ++PGA I++++G ++DLRF ++ + LQ G+KVERH+++ DLV+FNRQ
Sbjct: 391 ELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQ 450
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++N+ +
Sbjct: 451 PSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMV 510
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N+PV+GIVQD+L + +T++ FL +
Sbjct: 511 PRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTR 546
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++ DLV+FNRQP+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 434 KVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 493
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETR+E++N+ + PRQI++PQ N+PV+GIVQD+L + +T++ FL
Sbjct: 494 LAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFL 544
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFNRQ 60
ELV+RG ++PGA I++++G ++DLRF ++ + LQ G+KVERH+++ DLV+FNRQ
Sbjct: 391 ELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQ 450
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHRV++LP+STFR+NL +
Sbjct: 451 PSLHKMSIMGHRVKILPYSTFRLNLSV 477
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVERHIRDGDLVIF 143
++ LV G +PGAKYI+R GE+I+L F+ + LQ G+KVERHI+DGD+++F
Sbjct: 385 KLAALVENGPDIHPGAKYIIRPTGEKINLGFNKGQAQGRAMLQYGFKVERHIQDGDVILF 444
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHK SMM H+VRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E++AE+ +
Sbjct: 445 NRQPSLHKESMMAHKVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESKAELREL 504
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 505 ALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 543
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 111/158 (70%), Gaps = 7/158 (4%)
Query: 198 AEVEN---IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVI 254
A VEN IH + II P + +G + R M + KVERHI+DGD+++
Sbjct: 388 ALVENGPDIHPGAKYIIRPTGEKINLGFNKGQAQG-RAMLQYGF---KVERHIQDGDVIL 443
Query: 255 FNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 314
FNRQP+LHK SMM H+VRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E++AE+
Sbjct: 444 FNRQPSLHKESMMAHKVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESKAELRE 503
Query: 315 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ + P I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 504 LALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 541
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD--LHLQCGYKVERHIRDGDLVIFN 58
+ LV G +PGAKYI+R GE+I+L F+ + LQ G+KVERHI+DGD+++FN
Sbjct: 386 LAALVENGPDIHPGAKYIIRPTGEKINLGFNKGQAQGRAMLQYGFKVERHIQDGDVILFN 445
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RQP+LHK SMM H+VRV+P+STFR+NL +
Sbjct: 446 RQPSLHKESMMAHKVRVMPYSTFRLNLSV 474
>gi|197723718|gb|ACH72769.1| RNA polymerase II largest subunit [Kabatana sp. JI-2008]
Length = 909
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 130/173 (75%), Gaps = 4/173 (2%)
Query: 73 VRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKV 131
+ P + N+ +M +LV+ G +YPGA Y+VR++G+R+DLR++ ++ ++ G V
Sbjct: 261 IHTFPETVNSFNVEKMEQLVKSGPFEYPGANYVVREDGQRVDLRYN---RNVSIKEGCVV 317
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH+ DGD V+FNRQP+LHKMSMM HRVRV+ TFR+NLS T+PYNADFDGDEMNLH+P
Sbjct: 318 ERHMADGDTVLFNRQPSLHKMSMMAHRVRVMDRLTFRLNLSATTPYNADFDGDEMNLHMP 377
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QS +T AE++ + P QI++PQ N+PVMG+VQDTL VR++T RD F ++ E
Sbjct: 378 QSYQTMAELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFNEQE 430
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD V+FNRQP+LHKMSMM HRVRV+ TFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 317 VERHMADGDTVLFNRQPSLHKMSMMAHRVRVMDRLTFRLNLSATTPYNADFDGDEMNLHM 376
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS +T AE++ + P QI++PQ N+PVMG+VQDTL VR++T RD F +
Sbjct: 377 PQSYQTMAELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFN 427
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV+ G +YPGA Y+VR++G+R+DLR++ ++ ++ G VERH+ DGD V+FNRQ
Sbjct: 276 MEQLVKSGPFEYPGANYVVREDGQRVDLRYN---RNVSIKEGCVVERHMADGDTVLFNRQ 332
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMM HRVRV+ TFR+NL
Sbjct: 333 PSLHKMSMMAHRVRVMDRLTFRLNL 357
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium
hominis TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 129/156 (82%), Gaps = 2/156 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFNRQ 146
ELV+RG ++PGA I++++G ++DLRF ++ + LQ G+KVERH+++ DLV+FNRQ
Sbjct: 384 ELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNMLQYGWKVERHMKNDDLVLFNRQ 443
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVT 206
P+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++N+ +
Sbjct: 444 PSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMV 503
Query: 207 PRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ N+PV+GIVQD+L + +T++ FL +
Sbjct: 504 PRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTR 539
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 98/111 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+++ DLV+FNRQP+LHKMS+MGHRV++LP+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 427 KVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLH 486
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ QS ETR+E++N+ + PRQI++PQ N+PV+GIVQD+L + +T++ FL
Sbjct: 487 LAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFL 537
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFNRQ 60
ELV+RG ++PGA I++++G ++DLRF ++ + LQ G+KVERH+++ DLV+FNRQ
Sbjct: 384 ELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNNMLQYGWKVERHMKNDDLVLFNRQ 443
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHRV++LP+STFR+NL +
Sbjct: 444 PSLHKMSIMGHRVKILPYSTFRLNLSV 470
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 124/159 (77%), Gaps = 3/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIF 143
++ +V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++F
Sbjct: 381 KLVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILF 439
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ +
Sbjct: 440 NRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKEL 499
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 500 ALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 538
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 426 KVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 485
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 486 VPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 536
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 68/89 (76%), Gaps = 3/89 (3%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIFN 58
+ +V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++FN
Sbjct: 382 LVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILFN 440
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RQP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 441 RQPSLHKESMMAHRVRVMPYSTFRLNLSV 469
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 124/159 (77%), Gaps = 3/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIF 143
++ +V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++F
Sbjct: 381 KLVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILF 439
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++ +
Sbjct: 440 NRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKEL 499
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RD FL K
Sbjct: 500 ALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 538
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 426 KVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 485
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P I++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 486 VPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFL 536
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 68/89 (76%), Gaps = 3/89 (3%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFH--PKPSDLHLQCGYKVERHIRDGDLVIFN 58
+ +V G + +PGAKYI+R GE+++L + P P L LQ G+KVERHI DGD+++FN
Sbjct: 382 LVAMVNNGPNIHPGAKYIIRPTGEKLNLVGNKTPNPGRL-LQYGFKVERHILDGDVILFN 440
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RQP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 441 RQPSLHKESMMAHRVRVMPYSTFRLNLSV 469
>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
Length = 1007
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 121/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+++VRD+G RIDLR H + S+L LQ G+KVERHI GD+++FNR
Sbjct: 319 KLKRLVANGPTEHPGARFVVRDDGTRIDLRHHKRTSELTLQFGWKVERHISHGDIILFNR 378
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ N+ +
Sbjct: 379 QPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELANLCM 438
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 439 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 475
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 87/111 (78%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI GD+++FNRQP+L RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 363 KVERHISHGDIILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 422
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 423 VPQSEEARAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 473
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 64/84 (76%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+++VRD+G RIDLR H + S+L LQ G+KVERHI GD+++FNRQP+L
Sbjct: 323 LVANGPTEHPGARFVVRDDGTRIDLRHHKRTSELTLQFGWKVERHISHGDIILFNRQPSL 382
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 383 XXXXXXXXRVRVMPYSTFRLNLSV 406
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats.
Identities = 93/174 (53%), Positives = 127/174 (72%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ + LV RG +++PGA Y++R +G+RIDL F+ DL L+ G+
Sbjct: 343 KIHTFPEKVNSFNIDYLQKLVNRGPNEHPGANYVIRSDGQRIDLNFNR--FDLKLENGFT 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++D D V+FNRQP+LHKMSMMGHRV+V+ +FR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQDNDEVLFNRQPSLHKMSMMGHRVKVMSGKSFRLNLSATSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS T+AE+ + +QI++PQ+N+PV+GIVQDTL R +T RD F +K E
Sbjct: 461 PQSYATKAELGLLTAVDKQIVSPQSNKPVIGIVQDTLVGSRLLTVRDAFFNKRE 514
Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/111 (63%), Positives = 90/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++D D V+FNRQP+LHKMSMMGHRV+V+ +FR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQDNDEVLFNRQPSLHKMSMMGHRVKVMSGKSFRLNLSATSPYNADFDGDEMNLHM 460
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS T+AE+ + +QI++PQ+N+PV+GIVQDTL R +T RD F +
Sbjct: 461 PQSYATKAELGLLTAVDKQIVSPQSNKPVIGIVQDTLVGSRLLTVRDAFFN 511
Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/83 (56%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG +++PGA Y++R +G+RIDL F+ DL L+ G+ VERH++D D V+FNRQP+
Sbjct: 361 KLVNRGPNEHPGANYVIRSDGQRIDLNFNR--FDLKLENGFTVERHMQDNDEVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRV+V+ +FR+NL
Sbjct: 419 LHKMSMMGHRVKVMSGKSFRLNL 441
>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
anathema]
Length = 1690
Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 3/155 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LVR G YPGAKY++RD+G RI L D+ + GY +ERH+ DGD V+FNR
Sbjct: 300 RLAALVRNGPGTYPGAKYVIRDDGARIAL---TSRGDMPIVPGYIIERHLMDGDHVVFNR 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH+VRVLP+S+FR+NLS T+PYNADFDGDEMN+HVP S+E +EV+N+
Sbjct: 357 QPSLHKMSMMGHQVRVLPYSSFRLNLSVTTPYNADFDGDEMNMHVPNSLEAISEVKNLMA 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P QI+TPQ N P MG+VQD+L +++RD FL
Sbjct: 417 VPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFL 451
Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats.
Identities = 71/110 (64%), Positives = 91/110 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ERH+ DGD V+FNRQP+LHKMSMMGH+VRVLP+S+FR+NLS T+PYNADFDGDEMN+HV
Sbjct: 342 IERHLMDGDHVVFNRQPSLHKMSMMGHQVRVLPYSSFRLNLSVTTPYNADFDGDEMNMHV 401
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
P S+E +EV+N+ P QI+TPQ N P MG+VQD+L +++RD FL
Sbjct: 402 PNSLEAISEVKNLMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFL 451
Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/82 (60%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G YPGAKY++RD+G RI L D+ + GY +ERH+ DGD V+FNRQP+L
Sbjct: 304 LVRNGPGTYPGAKYVIRDDGARIAL---TSRGDMPIVPGYIIERHLMDGDHVVFNRQPSL 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGH+VRVLP+S+FR+NL
Sbjct: 361 HKMSMMGHQVRVLPYSSFRLNL 382
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+K
Sbjct: 298 RTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREE 464
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+K
Sbjct: 298 RTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREE 464
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H +D+ L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPQMHPGARYIIRENNERIDLRYHKNTADIALRTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
Length = 999
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|226876160|gb|ACO89401.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 102]
Length = 994
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 122/158 (77%), Gaps = 5/158 (3%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFN 144
R+ LV+ G +++PGA+YI+RD GERIDLR H + D +LQ G+KVERHI+DGD+++FN
Sbjct: 311 RLTRLVKNGPNEHPGARYIIRDTGERIDLRHHKRIGDGFYLQTGWKVERHIQDGDVILFN 370
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+
Sbjct: 371 RQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLC 426
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 427 MVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 464
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 356 KVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 411
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 412 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 462
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSD-LHLQCGYKVERHIRDGDLVIFNRQPT 62
LV+ G +++PGA+YI+RD GERIDLR H + D +LQ G+KVERHI+DGD+++FNRQP
Sbjct: 315 LVKNGPNEHPGARYIIRDTGERIDLRHHKRIGDGFYLQTGWKVERHIQDGDVILFNRQPX 374
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 375 XXXXX----RVRVMPYSTFRLNLSV 395
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats.
Identities = 90/173 (52%), Positives = 127/173 (73%), Gaps = 3/173 (1%)
Query: 73 VRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKV 131
++ P +N+ + +V G ++YPGA Y++R++G+RIDL++ DL L+ G+ V
Sbjct: 344 IQTFPEKVNSININTLQKMVNNGPTEYPGANYVIRNDGQRIDLKY--SRFDLKLEKGFIV 401
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH+ D D+V+FNRQP+LHKMSMMGHR +++ TFR+NLS TSPYNADFDGDEMNLH+P
Sbjct: 402 ERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNADFDGDEMNLHMP 461
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QS T++E+ N+ R II+PQ+N+PV+GIVQDTL VR T ++ F +K E
Sbjct: 462 QSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFFNKRE 514
Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats.
Identities = 73/125 (58%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 232 KMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP 288
K ++ D+ L+K VERH+ D D+V+FNRQP+LHKMSMMGHR +++ TFR+NLS TSP
Sbjct: 387 KYSRFDLKLEKGFIVERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSP 446
Query: 289 YNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKR 348
YNADFDGDEMNLH+PQS T++E+ N+ R II+PQ+N+PV+GIVQDTL VR T +
Sbjct: 447 YNADFDGDEMNLHMPQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLK 506
Query: 349 DVFLD 353
+ F +
Sbjct: 507 NTFFN 511
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
++V G ++YPGA Y++R++G+RIDL++ DL L+ G+ VERH+ D D+V+FNRQP+
Sbjct: 361 KMVNNGPTEYPGANYVIRNDGQRIDLKY--SRFDLKLEKGFIVERHMLDNDIVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR +++ TFR+NL
Sbjct: 419 LHKMSMMGHRAKIMNNKTFRLNL 441
>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
rhizinosum]
Length = 999
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon
diffractellum]
Length = 999
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|226876158|gb|ACO89400.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 26]
Length = 983
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 126/172 (73%), Gaps = 5/172 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 296 RTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWK 355
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 356 VERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 411
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 412 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLSR 463
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 355 KVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 411 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFL 461
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+++FNRQP
Sbjct: 315 LVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVILFNRQPXX 374
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 375 XXXX----RVRVMPYSTFRLNLSV 394
>gi|123979326|gb|ABM81488.1| RNA polymerase II largest subunit [Lecanora achariana]
Length = 791
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 117/157 (74%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI
Sbjct: 304 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVXXXXXXXXX 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 364 XXXXHKESMMGHRVRVMPHSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 424 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 460
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 81/111 (72%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI HK SMMGHRVRV+P STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 348 KVERHIVXXXXXXXXXXXXXHKESMMGHRVRVMPHSTFRLNLSVTSPYNADFDGDEMNLH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 408 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 458
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI
Sbjct: 305 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVXXXXXXXXXX 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P STFR+NL +
Sbjct: 365 XXXHKESMMGHRVRVMPHSTFRLNLSV 391
>gi|157741570|gb|ABV69490.1| RNA polymerase II largest subunit, partial [Verrucaria cyanea]
Length = 999
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
RV P + N+ R+ LV G +PGA+YI+R++ ERIDLR+H P D+ L+ G+K
Sbjct: 298 RVLTYPETVTLFNMGRLKRLVTNGPENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
+ERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 IERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
K+ERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KIERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 62/84 (73%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +PGA+YI+R++ ERIDLR+H P D+ L+ G+K+ERHI+DGD+++FNRQP
Sbjct: 317 LVTNGPENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWKIERHIQDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
Length = 999
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
Length = 999
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|13274164|emb|CAC33861.1| RNA polymerase II largest subunit [Pleistophora hippoglossoideos]
Length = 1093
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 122/161 (75%), Gaps = 2/161 (1%)
Query: 84 NLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIF 143
N R+ +VR G +++PGA ++ R++ ++IDLRF+ L C VERH+ D D+V+F
Sbjct: 326 NERLGRMVRNGPNRWPGANFVTREDEQKIDLRFNRNSVLLTEGC--VVERHMADNDIVLF 383
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNLH+PQS TRAE+EN+
Sbjct: 384 NRQPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLHMPQSFNTRAELENL 443
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ + +++ Q N+PVMGIVQD+L VRKMT +DVF+++ E
Sbjct: 444 CIVAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIERYE 484
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D+V+FNRQPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 371 VERHMADNDIVLFNRQPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLHM 430
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+EN+ + + +++ Q N+PVMGIVQD+L VRKMT +DVF++
Sbjct: 431 PQSFNTRAELENLCIVAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIE 481
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+VR G +++PGA ++ R++ ++IDLRF+ L C VERH+ D D+V+FNRQPTL
Sbjct: 332 MVRNGPNRWPGANFVTREDEQKIDLRFNRNSVLLTEGC--VVERHMADNDIVLFNRQPTL 389
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HR R++ TFR+NL +
Sbjct: 390 HKMSMMAHRARIMKGKTFRLNLSV 413
>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
Length = 999
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741498|gb|ABV69454.1| RNA polymerase II largest subunit, partial [Endocarpon psorodeum]
Length = 999
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 124/172 (72%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
imbricatum]
Length = 999
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + V P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCVVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + V P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCVVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741612|gb|ABV69511.1| RNA polymerase II largest subunit, partial [Verrucaria weddellii]
Length = 999
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 123/172 (71%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAEPSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEETRAEPSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEAHPGARYIIRENNERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|226876164|gb|ACO89403.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 315]
Length = 983
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 120/155 (77%), Gaps = 4/155 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+++FNR
Sbjct: 311 KLKRLVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVILFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 371 QPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 427 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 461
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 355 KVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 411 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 461
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+++FNRQP
Sbjct: 315 LVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVILFNRQPXX 374
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 375 XXXX----RVRVMPYSTFRLNLSV 394
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N ++ +LV G ++PGA+YI+R+ GERIDLRFH + + L+ G+K
Sbjct: 298 RTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++PGA+YI+R+ GERIDLRFH + + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVVNGPERHPGARYIIREQGERIDLRFHKNTNSITLKAGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 196 bits (499), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/159 (54%), Positives = 126/159 (79%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +PGA+Y+++++G R+DLR+ K ++ L+ G KVERH++DGD+V+FNR
Sbjct: 373 KLKKLVLNGPIHHPGARYVIKNDGSRLDLRYVKKLDEIPLEIGCKVERHLQDGDVVLFNR 432
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH V+++ +STFRMNLS TSPYNADFDGDEMNLH+PQ++E +AE+ N+ +
Sbjct: 433 QPSLHKMSMMGHVVKIMHYSTFRMNLSATSPYNADFDGDEMNLHLPQTIEAKAELLNLLM 492
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P II+ Q N+PVMGIVQD+L ++ RD FL++ +
Sbjct: 493 LPNCIISQQGNKPVMGIVQDSLVGGFLLSHRDSFLNRSQ 531
Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/112 (64%), Positives = 94/112 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD+V+FNRQP+LHKMSMMGH V+++ +STFRMNLS TSPYNADFDGDEMNLH
Sbjct: 417 KVERHLQDGDVVLFNRQPSLHKMSMMGHVVKIMHYSTFRMNLSATSPYNADFDGDEMNLH 476
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQ++E +AE+ N+ + P II+ Q N+PVMGIVQD+L ++ RD FL+
Sbjct: 477 LPQTIEAKAELLNLLMLPNCIISQQGNKPVMGIVQDSLVGGFLLSHRDSFLN 528
Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 68/83 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+Y+++++G R+DLR+ K ++ L+ G KVERH++DGD+V+FNRQP+
Sbjct: 376 KLVLNGPIHHPGARYVIKNDGSRLDLRYVKKLDEIPLEIGCKVERHLQDGDVVLFNRQPS 435
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGH V+++ +STFRMNL
Sbjct: 436 LHKMSMMGHVVKIMHYSTFRMNL 458
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 196 bits (499), Expect = 1e-47, Method: Composition-based stats.
Identities = 89/112 (79%), Positives = 101/112 (90%)
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D D+V+FNRQPTLHKMSMMGHRV+VLPWSTFR+NLS T+PYNADFDGDEMN+HV
Sbjct: 1 VERHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTFRLNLSVTTPYNADFDGDEMNMHV 60
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQSMETRAE+ I + PRQIITPQ+N+P MGIVQD+L AV K TKRDVFL+K
Sbjct: 61 PQSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLEK 112
Score = 194 bits (494), Expect = 4e-47, Method: Composition-based stats.
Identities = 88/111 (79%), Positives = 100/111 (90%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI D D+V+FNRQPTLHKMSMMGHRV+VLPWSTFR+NLS T+PYNADFDGDEMN+HV
Sbjct: 1 VERHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTFRLNLSVTTPYNADFDGDEMNMHV 60
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQSMETRAE+ I + PRQIITPQ+N+P MGIVQD+L AV K TKRDVFL+
Sbjct: 61 PQSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLE 111
Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/41 (85%), Positives = 39/41 (95%)
Query: 45 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
VERHI D D+V+FNRQPTLHKMSMMGHRV+VLPWSTFR+NL
Sbjct: 1 VERHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTFRLNL 41
>gi|157741574|gb|ABV69492.1| RNA polymerase II largest subunit, partial [Parabagliettoa
dufourii]
Length = 999
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 126/174 (72%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
RV P + N+ ++ LV G +PGA+YI+R++ ERIDLR+H P D+ L+ G+K
Sbjct: 298 RVLTYPETVTLFNMGKLKRLVTNGPENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
+ERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 IERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
K+ERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KIERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 62/84 (73%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +PGA+YI+R++ ERIDLR+H P D+ L+ G+K+ERHI+DGD+++FNRQP
Sbjct: 317 LVTNGPENHPGARYIIREHNERIDLRYHKNPGDIVLKVGWKIERHIQDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N ++ +LV G ++PGA+YI+R++GERIDLRFH + L+ G+K
Sbjct: 298 RTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREHGERIDLRFHKNTDSITLKAGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++PGA+YI+R++GERIDLRFH + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVVNGPERHPGARYIIREHGERIDLRFHKNTDSITLKAGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741510|gb|ABV69460.1| RNA polymerase II largest subunit, partial [Placidiopsis
cinerascens]
Length = 999
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 122/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N R+ + V G +PGA+YI+R+ GERIDLRFH P + L G+K
Sbjct: 298 RTLTYPETVTRFNKERLKQFVTNGPDIHPGARYIIREQGERIDLRFHKDPKSITLLTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R+ GERIDLRFH P + L G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPDIHPGARYIIREQGERIDLRFHKDPKSITLLTGWKVERHIMDGDIILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis
poeltiana]
Length = 988
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 123/172 (71%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+YI+R+N ERIDLR+H S++ L+ G+K
Sbjct: 287 RTLTYPETVTRFNMERLKNFVANGPQMHPGARYIIRENNERIDLRYHKNTSEIALKKGWK 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 347 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 400 PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 451
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+YI+R+N ERIDLR+H S++ L+ G+KVERHI DGD+++FNRQP
Sbjct: 306 FVANGPQMHPGARYIIRENNERIDLRYHKNTSEIALKKGWKVERHIMDGDVILFNRQPXX 365
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 366 -------XRVRVMPYSTFRLNLSV 382
>gi|157741508|gb|ABV69459.1| RNA polymerase II largest subunit, partial [Placidiopsis
cartilaginea]
Length = 989
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 122/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N R+ + V G +PGA+YI+R+ GERIDLRFH P + L G+K
Sbjct: 298 RTLTYPETVTRFNKDRLKQFVTNGPDIHPGARYIIREQGERIDLRFHKDPKSITLLTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R+ GERIDLRFH P + L G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPDIHPGARYIIREQGERIDLRFHKDPKSITLLTGWKVERHIMDGDIILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741614|gb|ABV69512.1| RNA polymerase II largest subunit, partial [Verrucaria tristis]
Length = 988
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL R+ LV G +PGA+YI+R+ GERIDLRFH ++ L+ G+K
Sbjct: 287 RTLTYPETVTPFNLDRLKRLVTNGPEHHPGARYIIREQGERIDLRFHKNTGEITLKTGWK 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 347 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 400 PQSEESRAELHQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 453
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEESRAELHQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +PGA+YI+R+ GERIDLRFH ++ L+ G+KVERHI DGD+++FNRQP
Sbjct: 306 LVTNGPEHHPGARYIIREQGERIDLRFHKNTGEITLKTGWKVERHIMDGDIILFNRQPXX 365
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 366 -------XRVRVMPYSTFRLNLSV 382
>gi|113957452|gb|ABI49113.1| RNA polymerase II largest subunit [Pseudocyphellaria anomala]
Length = 997
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 122/157 (77%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +I
Sbjct: 303 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 363 XXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 423 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 459
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 87/111 (78%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +I HK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIIDGDYIIXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 407 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 457
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +I
Sbjct: 304 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HK SMMGHRVRV+P+STFR+NL +
Sbjct: 364 XXXHKESMMGHRVRVMPYSTFRLNLSV 390
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats.
Identities = 89/166 (53%), Positives = 128/166 (77%), Gaps = 3/166 (1%)
Query: 79 STFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 138
++F +N ++ +LV G ++YPGA Y++R +G+RIDL F D+ L+ GY VERH+ +G
Sbjct: 350 TSFNLN-KLRKLVSNGPNKYPGANYLIRRDGQRIDLNF--SRGDVILEEGYVVERHMLNG 406
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
DLV+FNRQP+LHKMSMM H+V+V+ TFR+NLS T+PYNADFDGDEMNLH+PQS ++A
Sbjct: 407 DLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGDEMNLHMPQSYNSKA 466
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
E+ + + + II+PQ+N+PVMGI+QDTL V ++T + VF+ + E
Sbjct: 467 ELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREE 512
Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/122 (57%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 234 TKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYN 290
++ DV L++ VERH+ +GDLV+FNRQP+LHKMSMM H+V+V+ TFR+NLS T+PYN
Sbjct: 387 SRGDVILEEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYN 446
Query: 291 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 350
ADFDGDEMNLH+PQS ++AE+ + + + II+PQ+N+PVMGI+QDTL V ++T + V
Sbjct: 447 ADFDGDEMNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGV 506
Query: 351 FL 352
F+
Sbjct: 507 FI 508
Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G ++YPGA Y++R +G+RIDL F D+ L+ GY VERH+ +GDLV+FNRQP+
Sbjct: 359 KLVSNGPNKYPGANYLIRRDGQRIDLNF--SRGDVILEEGYVVERHMLNGDLVLFNRQPS 416
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM H+V+V+ TFR+NL
Sbjct: 417 LHKMSMMAHKVKVMDGLTFRLNL 439
>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
Length = 999
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 121/172 (70%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N R+ + V G +PGA+YIVR+ GERIDLRFH P + L G+K
Sbjct: 298 RTLTYPETVTRFNKERLKKFVTNGPDNHPGARYIVREQGERIDLRFHKDPKSITLLTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YIVR+ GERIDLRFH P + L G+KVERHI DGD+++FNRQP
Sbjct: 316 KFVTNGPDNHPGARYIVREQGERIDLRFHKDPKSITLLTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|149794944|gb|ABR31768.1| RNA polymerase II largest subunit [Ceramothyrium carniolicum]
Length = 994
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 121/157 (77%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ V G +++PGA+Y++R GER+DLR H + +++L+ G+KVERH+ GD+++FNR
Sbjct: 311 RLKRFVANGPTEHPGARYVIRSTGERVDLRHHKRAGEMNLEYGWKVERHLMTGDVILFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E++AE+ + +
Sbjct: 371 QPSLXXXX----RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESKAELSQLCL 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I++PQ N P+MGIVQDTL V K+ +RD+FL+K
Sbjct: 427 VPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLNK 463
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 89/112 (79%), Gaps = 4/112 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD+++FNRQP+L RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 355 KVERHLMTGDVILFNRQPSLXXXX----RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 410
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E++AE+ + + PR I++PQ N P+MGIVQDTL V K+ +RD+FL+
Sbjct: 411 VPQSEESKAELSQLCLVPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLN 462
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 61/82 (74%), Gaps = 4/82 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +++PGA+Y++R GER+DLR H + +++L+ G+KVERH+ GD+++FNRQP+L
Sbjct: 315 FVANGPTEHPGARYVIRSTGERVDLRHHKRAGEMNLEYGWKVERHLMTGDVILFNRQPSL 374
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
RVRV+P+STFR+NL
Sbjct: 375 XXXX----RVRVMPYSTFRLNL 392
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 120/157 (76%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M ELV++G GAKY+ R+NG R D+R + L L G KVER IRDGDLV+ NR
Sbjct: 383 KMQELVQQG-----GAKYLTRENGNRFDIRTVKEYPVLKL--GDKVERSIRDGDLVVCNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP++ K++M G+RV+VLPW++FR+N CT P+N DEMN+HVPQSMETRAEVENI +
Sbjct: 436 QPSVQKVAMTGNRVKVLPWASFRLNPCCTYPFNKYLYSDEMNIHVPQSMETRAEVENILL 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL+K
Sbjct: 496 TPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLEK 532
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 95/113 (84%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
DKVER IRDGDLV+ NRQP++ K++M G+RV+VLPW++FR+N CT P+N DEMN+
Sbjct: 419 DKVERSIRDGDLVVCNRQPSVQKVAMTGNRVKVLPWASFRLNPCCTYPFNKYLYSDEMNI 478
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQSMETRAEVENI +TPRQIITPQ N+PVMGIVQDTL K+TKRDVFL+
Sbjct: 479 HVPQSMETRAEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVFLE 531
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 16/107 (14%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV++G GAKY+ R+NG R D+R + L L G KVER IRDGDLV+ NRQ
Sbjct: 384 MQELVQQG-----GAKYLTRENGNRFDIRTVKEYPVLKL--GDKVERSIRDGDLVVCNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRD 107
P++ K++M G+RV+VLPW++FR+N YP KY+ D
Sbjct: 437 PSVQKVAMTGNRVKVLPWASFRLN---------PCCTYPFNKYLYSD 474
>gi|157741484|gb|ABV69447.1| RNA polymerase II largest subunit, partial [Catapyrenium daedaleum]
Length = 999
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 117/159 (73%), Gaps = 7/159 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V G +PGA+YI+R+ GERIDLRFH P + L G+KVERHI DGD+++FNR
Sbjct: 313 RLKQFVTNGPDTHPGARYIIREQGERIDLRFHKDPKSITLLTGWKVERHIMDGDVILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R+ GERIDLRFH P + L G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPDTHPGARYIIREQGERIDLRFHKDPKSITLLTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|134147421|gb|ABO63964.1| RNA polymerase II largest subunit [Pleistophora mulleri]
Length = 1063
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 123/159 (77%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +VR G +++PGA ++ R++ ++IDLRF+ + + L G VERH+ D D+V+FNR
Sbjct: 332 RLERMVRNGPNRWPGANFVTREDEQKIDLRFNR--NSVLLTEGCVVERHMADNDIVLFNR 389
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNLH+PQS TRAE+EN+ +
Sbjct: 390 QPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLHMPQSFNTRAELENLCI 449
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ +++ Q N+PVMGIVQD+L VRKMT +DVF+++ E
Sbjct: 450 VAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIERYE 488
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D+V+FNRQPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNLH+
Sbjct: 375 VERHMADNDIVLFNRQPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLHM 434
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+EN+ + + +++ Q N+PVMGIVQD+L VRKMT +DVF++
Sbjct: 435 PQSFNTRAELENLCIVAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIE 485
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+VR G +++PGA ++ R++ ++IDLRF+ + + L G VERH+ D D+V+FNRQPTL
Sbjct: 336 MVRNGPNRWPGANFVTREDEQKIDLRFNR--NSVLLTEGCVVERHMADNDIVLFNRQPTL 393
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HR R++ TFR+NL +
Sbjct: 394 HKMSMMAHRARIMKGKTFRLNLSV 417
>gi|226876154|gb|ACO89398.1| RNA polymerase II largest subunit, partial [Capronia semiimmersa]
Length = 993
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 121/155 (78%), Gaps = 4/155 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DGD+++FNR
Sbjct: 311 KLKRLVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDGDVILFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 371 QPXXXXXX----RVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCM 426
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 427 VPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 461
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 87/110 (79%), Gaps = 4/110 (3%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 356 VERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHV 411
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 412 PQSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 461
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 64/84 (76%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DGD+++FNRQP
Sbjct: 315 LVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDGDVILFNRQPXX 374
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 375 XXXX----RVRVMPYSTFRLNLSV 394
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741592|gb|ABV69501.1| RNA polymerase II largest subunit, partial [Verrucaria marmorea]
Length = 999
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 121/159 (76%), Gaps = 7/159 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + +PGA++IVR+N ERIDLR+H S++ L+ G+KVERHI+DGD ++FNR
Sbjct: 313 KLKQLVVNGPNNHPGARFIVRENNERIDLRYHKNTSEITLKVGWKVERHIKDGDFILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 464
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIKDGDFILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + +PGA++IVR+N ERIDLR+H S++ L+ G+KVERHI+DGD ++FNRQP
Sbjct: 316 QLVVNGPNNHPGARFIVRENNERIDLRYHKNTSEITLKVGWKVERHIKDGDFILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
Length = 999
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit [Pleistophora sp. LS]
Length = 897
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 120/162 (74%), Gaps = 3/162 (1%)
Query: 85 LRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFN 144
+R+ ELV+RG +QYPGA Y++R +G +IDLRF + LQ G+ VERH+ DGD V+FN
Sbjct: 268 IRLSELVKRGPAQYPGANYVIRGDGMKIDLRF---TRSVELQIGWTVERHMVDGDYVLFN 324
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHKMSMM HRVRV+ +FR+NLS T+PYNADFDGDEMNLH+PQS T E+ +
Sbjct: 325 RQPSLHKMSMMCHRVRVMEGKSFRLNLSVTTPYNADFDGDEMNLHMPQSYITAVELRRLT 384
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERH 246
P I++PQ+N+P+MGIVQDTL V M+ +F+++ H
Sbjct: 385 HVPLHILSPQSNKPIMGIVQDTLVGVYIMSGDSIFIEESTTH 426
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD V+FNRQP+LHKMSMM HRVRV+ +FR+NLS T+PYNADFDGDEMNLH+
Sbjct: 311 VERHMVDGDYVLFNRQPSLHKMSMMCHRVRVMEGKSFRLNLSVTTPYNADFDGDEMNLHM 370
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS T E+ + P I++PQ+N+P+MGIVQDTL V M+ +F++
Sbjct: 371 PQSYITAVELRRLTHVPLHILSPQSNKPIMGIVQDTLVGVYIMSGDSIFIE 421
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV+RG +QYPGA Y++R +G +IDLRF + LQ G+ VERH+ DGD V+FNRQ
Sbjct: 270 LSELVKRGPAQYPGANYVIRGDGMKIDLRF---TRSVELQIGWTVERHMVDGDYVLFNRQ 326
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRVRV+ +FR+NL +
Sbjct: 327 PSLHKMSMMCHRVRVMEGKSFRLNLSV 353
>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
Length = 999
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ +LV G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
Length = 999
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 123/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 460
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741476|gb|ABV69443.1| RNA polymerase II largest subunit, partial [Verrucaria baldensis]
Length = 998
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 122/159 (76%), Gaps = 7/159 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + +PGA++IVR+N ERIDLR+H +++ L+ G+KVERHI+DGD+++FNR
Sbjct: 312 KLKQLVVNGPNNHPGARFIVRENNERIDLRYHKNTAEITLKTGWKVERHIKDGDVILFNR 371
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 372 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 425 VPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLSREE 463
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 87/111 (78%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 356 KVERHIKDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 409 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFL 459
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + +PGA++IVR+N ERIDLR+H +++ L+ G+KVERHI+DGD+++FNRQP
Sbjct: 315 QLVVNGPNNHPGARFIVRENNERIDLRYHKNTAEITLKTGWKVERHIKDGDVILFNRQPX 374
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 375 X-------XRVRVMPYSTFRLNLSV 392
>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 989
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ + V G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 194 bits (493), Expect = 6e-47, Method: Composition-based stats.
Identities = 88/166 (53%), Positives = 129/166 (77%), Gaps = 1/166 (0%)
Query: 79 STFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 138
++F + F L+ G ++PGAKY++R++ RIDLR+ S+++L+ GY VERH+++G
Sbjct: 366 TSFNIEYMKF-LLYNGPYKHPGAKYLIRNDNNRIDLRYVKYLSNINLENGYCVERHLQNG 424
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
DLV+FNRQP+LHKMSMMGH V+V+ +STFR+NLS TSPYNADFDGDEMNLH PQ++E+++
Sbjct: 425 DLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSATSPYNADFDGDEMNLHFPQNVESKS 484
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
E++N+ + I++PQ N+P+MGIVQD+L +T++ FL K E
Sbjct: 485 ELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLITEKGNFLSKYE 530
Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/110 (60%), Positives = 93/110 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+++GDLV+FNRQP+LHKMSMMGH V+V+ +STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 417 VERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSATSPYNADFDGDEMNLHF 476
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQ++E+++E++N+ + I++PQ N+P+MGIVQD+L +T++ FL
Sbjct: 477 PQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLITEKGNFL 526
Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 68/82 (82%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ G ++PGAKY++R++ RIDLR+ S+++L+ GY VERH+++GDLV+FNRQP+L
Sbjct: 376 LLYNGPYKHPGAKYLIRNDNNRIDLRYVKYLSNINLENGYCVERHLQNGDLVLFNRQPSL 435
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGH V+V+ +STFR+NL
Sbjct: 436 HKMSMMGHIVKVMKFSTFRLNL 457
>gi|157741514|gb|ABV69462.1| RNA polymerase II largest subunit, partial [Verrucaria chiloensis]
Length = 999
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ + V G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIVDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIVDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
Length = 989
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ + V G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIVDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIVDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741554|gb|ABV69482.1| RNA polymerase II largest subunit, partial [Thelidium incavatum]
Length = 999
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 122/170 (71%), Gaps = 8/170 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ ++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISKLKNLIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKAGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKAGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMN-LRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
+V P N R+ LVR G +++PGA ++ R++G+RIDLRF+ + + L G
Sbjct: 339 KVHTFPEQVMSFNKARLEVLVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCV 396
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ +GD+V+FNRQP+LHKMSMM HRVR++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 397 VERHMMNGDVVLFNRQPSLHKMSMMAHRVRIMKGKTFRLNLSVTSPYNADFDGDEMNLHM 456
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS TRAE+ENI + +++ Q N+PVMGIVQD+L VRKMT VF++ E
Sbjct: 457 PQSYNTRAELENICGVDKNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFVEWYE 510
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD+V+FNRQP+LHKMSMM HRVR++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 397 VERHMMNGDVVLFNRQPSLHKMSMMAHRVRIMKGKTFRLNLSVTSPYNADFDGDEMNLHM 456
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+ENI + +++ Q N+PVMGIVQD+L VRKMT VF++
Sbjct: 457 PQSYNTRAELENICGVDKNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFVE 507
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGA ++ R++G+RIDLRF+ + + L G VERH+ +GD+V+FNRQP+L
Sbjct: 358 LVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCVVERHMMNGDVVLFNRQPSL 415
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HRVR++ TFR+NL +
Sbjct: 416 HKMSMMAHRVRIMKGKTFRLNLSV 439
>gi|157741516|gb|ABV69463.1| RNA polymerase II largest subunit, partial [Placidium lachneum]
Length = 989
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ + V G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIVDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIVDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
Length = 999
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ + V G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQFVTNGPEIHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 99/150 (66%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
IH R II N R + +DT K+ KVERHI DGD+++FNRQP
Sbjct: 324 IHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVILFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEIHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741534|gb|ABV69472.1| RNA polymerase II largest subunit, partial [Polyblastia cupularis]
Length = 999
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD ++FNR
Sbjct: 313 RLKYLVTRGPDNHPGARYIIRENNERIDLRYHKDAKGIALKVGWKVERHIMDGDYILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD ++FNRQP
Sbjct: 317 LVTRGPDNHPGARYIIRENNERIDLRYHKDAKGIALKVGWKVERHIMDGDYILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMN-LRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P N R+ LVR G +++PGA ++ R++G+RIDLRF+ + + L G
Sbjct: 352 RIHTFPEHVTAFNKARLEALVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCV 409
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ GD+V+FNRQP+LHKMSMM HR RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 410 VERHMTAGDVVLFNRQPSLHKMSMMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHM 469
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS TRAE+ENI R +++ Q N+PVMGIVQD+L VRKMT VF++ E
Sbjct: 470 PQSHNTRAELENICGVDRNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFIEWYE 523
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 89/111 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ GD+V+FNRQP+LHKMSMM HR RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 410 VERHMTAGDVVLFNRQPSLHKMSMMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHM 469
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+ENI R +++ Q N+PVMGIVQD+L VRKMT VF++
Sbjct: 470 PQSHNTRAELENICGVDRNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFIE 520
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGA ++ R++G+RIDLRF+ + + L G VERH+ GD+V+FNRQP+L
Sbjct: 371 LVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCVVERHMTAGDVVLFNRQPSL 428
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HR RV+ TFR+NL +
Sbjct: 429 HKMSMMAHRARVMKGKTFRLNLSV 452
>gi|13274174|emb|CAC33869.1| RNA polymerase II largest subunit [Vavraia culicis]
Length = 988
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMN-LRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
+V P N R+ LVR G +++PGA ++ R +G+RIDLRF+ + + L G
Sbjct: 266 KVHTFPEQVMSFNKARLEVLVRNGPNKWPGANFVTRGDGQRIDLRFNR--NSILLTEGCV 323
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ +GD+V+FNRQP+LHKMSMM HRVR++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 324 VERHMMNGDVVLFNRQPSLHKMSMMAHRVRIMKGKTFRLNLSVTSPYNADFDGDEMNLHM 383
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS TRAE+ENI + +++ Q N+PVMGIVQD+L VRKMT VF++ E
Sbjct: 384 PQSYNTRAELENICGVDKNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFVEWYE 437
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD+V+FNRQP+LHKMSMM HRVR++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 324 VERHMMNGDVVLFNRQPSLHKMSMMAHRVRIMKGKTFRLNLSVTSPYNADFDGDEMNLHM 383
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+ENI + +++ Q N+PVMGIVQD+L VRKMT VF++
Sbjct: 384 PQSYNTRAELENICGVDKNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFVE 434
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGA ++ R +G+RIDLRF+ + + L G VERH+ +GD+V+FNRQP+L
Sbjct: 285 LVRNGPNKWPGANFVTRGDGQRIDLRFNR--NSILLTEGCVVERHMMNGDVVLFNRQPSL 342
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMM HRVR++ TFR+NL
Sbjct: 343 HKMSMMAHRVRIMKGKTFRLNL 364
>gi|157741478|gb|ABV69444.1| RNA polymerase II largest subunit, partial [Bagliettoa cazzae]
Length = 999
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 126/169 (74%), Gaps = 8/169 (4%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + R N+ ++ +LV G + +PGA++IVR++ ERIDLR+H S++ L+ G+KVERHI
Sbjct: 303 PETVTRWNMHKLKQLVVNGPNNHPGARFIVREHNERIDLRYHKNTSEITLKTGWKVERHI 362
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQ+ E
Sbjct: 363 KDGDFILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQNEE 415
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 416 SRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIKDGDFILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQNEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + +PGA++IVR++ ERIDLR+H S++ L+ G+KVERHI+DGD ++FNRQP
Sbjct: 316 QLVVNGPNNHPGARFIVREHNERIDLRYHKNTSEITLKTGWKVERHIKDGDFILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 999
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 122/174 (70%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+ GIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLKGIVQDTLCGIYKICRRDIFLSREE 464
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+ GIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLKGIVQDTLCGIYKICRRDIFL 460
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|226876166|gb|ACO89404.1| RNA polymerase II largest subunit, partial [Ceramothyrium
carniolicum]
Length = 992
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 119/157 (75%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ V G +++PGA+Y++R GER+DLR H + +++L+ G+KVERH+ GD+++FNR
Sbjct: 310 RLKRFVANGPTEHPGARYVIRSTGERVDLRHHKRAGEMNLEYGWKVERHLMTGDVILFNR 369
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E++AE+ + +
Sbjct: 370 QPXXXXXX----RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESKAELSQLCL 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PR I++PQ N P+MGIVQDTL V K+ +RD+FL+K
Sbjct: 426 VPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLNK 462
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD+++FNRQP RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 354 KVERHLMTGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E++AE+ + + PR I++PQ N P+MGIVQDTL V K+ +RD+FL+
Sbjct: 410 VPQSEESKAELSQLCLVPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLN 461
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 4/82 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +++PGA+Y++R GER+DLR H + +++L+ G+KVERH+ GD+++FNRQP
Sbjct: 314 FVANGPTEHPGARYVIRSTGERVDLRHHKRAGEMNLEYGWKVERHLMTGDVILFNRQPXX 373
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
RVRV+P+STFR+NL
Sbjct: 374 XXXX----RVRVMPYSTFRLNL 391
>gi|157741582|gb|ABV69496.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 122/172 (70%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P S N+ ++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+K
Sbjct: 298 RTLTYPESVTPFNISKLKNLIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 122/172 (70%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P S N+ ++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+K
Sbjct: 298 RTLTYPESVTPFNISKLKNLIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741594|gb|ABV69502.1| RNA polymerase II largest subunit, partial [Hydropunctaria maura]
Length = 999
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + + N+ R+ + V G +PGA+YI+R++ ERIDLR+H +++ L+ G+K
Sbjct: 298 RTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKNTAEITLKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 464
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H +++ L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIREHNERIDLRYHKNTAEITLKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|157741560|gb|ABV69485.1| RNA polymerase II largest subunit, partial [Hydropunctaria
adriatica]
Length = 988
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 125/174 (71%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + + N+ R+ + V G +PGA+YI+R++ ERIDLR+H +++ L+ G+K
Sbjct: 287 RTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIREHNERIDLRYHKNTAEITLKTGWK 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 347 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 400 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 453
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R++ ERIDLR+H +++ L+ G+KVERHI DGD+++FNRQP
Sbjct: 305 QFVTNGPEMHPGARYIIREHNERIDLRYHKNTAEITLKTGWKVERHIMDGDVILFNRQPX 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 X-------XRVRVMPYSTFRLNLSV 382
>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
Length = 1040
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 120/157 (76%), Gaps = 3/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELV G S +PGA+++ ++G R DL F P + L GY VERH+ D D+V+FNR
Sbjct: 307 RLQELVNHGPSVHPGARFVFMEDGTRQDLEFSP---NFPLAYGYTVERHLEDNDVVLFNR 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+M MMGHRV+ + + TFR+NLS TSPYNADFDGDEMNLH PQS+ T+AE+ + +
Sbjct: 364 QPTLHRMGMMGHRVKTMKFKTFRLNLSVTSPYNADFDGDEMNLHAPQSLLTKAELLELMM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ +I+P++N PVMG+VQD+L A R++T RDVFL++
Sbjct: 424 IPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLER 460
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 93/111 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D+V+FNRQPTLH+M MMGHRV+ + + TFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 VERHLEDNDVVLFNRQPTLHRMGMMGHRVKTMKFKTFRLNLSVTSPYNADFDGDEMNLHA 408
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ T+AE+ + + P+ +I+P++N PVMG+VQD+L A R++T RDVFL+
Sbjct: 409 PQSLLTKAELLELMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLE 459
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV G S +PGA+++ ++G R DL F P + L GY VERH+ D D+V+FNRQPT
Sbjct: 310 ELVNHGPSVHPGARFVFMEDGTRQDLEFSP---NFPLAYGYTVERHLEDNDVVLFNRQPT 366
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LH+M MMGHRV+ + + TFR+NL +
Sbjct: 367 LHRMGMMGHRVKTMKFKTFRLNLSV 391
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 122/172 (70%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + + N+ R+ + V G +PGA+YI+R+N ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIRENNERIDLRYHKDTSGIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PY+ADFDGDEMNLH
Sbjct: 358 VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYDADFDGDEMNLHA 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 411 PQSEETRAELSRLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PY+ADFDGDEMNLH
Sbjct: 357 KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYDADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 APQSEETRAELSRLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +PGA+YI+R+N ERIDLR+H S + L+ G+KVERHI DGD+++FNRQP
Sbjct: 316 QFVTNGPEMHPGARYIIRENNERIDLRYHKDTSGIALKTGWKVERHIMDGDVILFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
Length = 1828
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 73 VRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVE 132
+ P R N++ E + ++PGAKYI+ +G R DLR+ L+ G VE
Sbjct: 361 ILTFPERVTRYNIKELEKLVNQRDKWPGAKYIIDLDGRRYDLRYTNGIP--QLKEGMIVE 418
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RHI +GD+V+FNRQP+LHKMS+MGHRVRVL +STFR+NLSCT+PYNADFDGDEMN+HVPQ
Sbjct: 419 RHINNGDIVLFNRQPSLHKMSIMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNIHVPQ 478
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+++ RAEV + + + II+P++N PVMGIVQDTL +K+T+RD F+ K
Sbjct: 479 TVQARAEVTELMMVHKNIISPKSNGPVMGIVQDTLLGSQKLTQRDTFVAK 528
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 96/110 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI +GD+V+FNRQP+LHKMS+MGHRVRVL +STFR+NLSCT+PYNADFDGDEMN+HV
Sbjct: 417 VERHINNGDIVLFNRQPSLHKMSIMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNIHV 476
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQ+++ RAEV + + + II+P++N PVMGIVQDTL +K+T+RD F+
Sbjct: 477 PQTVQARAEVTELMMVHKNIISPKSNGPVMGIVQDTLLGSQKLTQRDTFV 526
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 11 QYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMG 70
++PGAKYI+ +G R DLR+ L+ G VERHI +GD+V+FNRQP+LHKMS+MG
Sbjct: 385 KWPGAKYIIDLDGRRYDLRYTNGIP--QLKEGMIVERHINNGDIVLFNRQPSLHKMSIMG 442
Query: 71 HRVRVLPWSTFRMNL 85
HRVRVL +STFR+NL
Sbjct: 443 HRVRVLNYSTFRLNL 457
>gi|125657572|gb|ABN48849.1| RNA polymerase II largest subunit [Miliolidae sp. DL-2007]
Length = 462
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 118/149 (79%), Gaps = 1/149 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + NL +M ELV G +PGAK I+RD+G++IDLR+ + SD++L+ GY VERH+
Sbjct: 314 PGRVTKYNLHKMKELVENGPGIHPGAKSIIRDDGKQIDLRWVQRTSDMNLEPGYIVERHL 373
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
++GD+V+FNRQP+LHKMSMM H V++LPWSTFR+NLS TS YNADFDGDEMNLH PQS
Sbjct: 374 QNGDVVLFNRQPSLHKMSMMAHHVKILPWSTFRINLSVTSTYNADFDGDEMNLHTPQSEN 433
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQ 224
+R+E+ N+ + P I++PQ N+PVMGIVQ
Sbjct: 434 SRSELLNLALVPNHIVSPQANKPVMGIVQ 462
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 81/94 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+++GD+V+FNRQP+LHKMSMM H V++LPWSTFR+NLS TS YNADFDGDEMNLH
Sbjct: 369 VERHLQNGDVVLFNRQPSLHKMSMMAHHVKILPWSTFRINLSVTSTYNADFDGDEMNLHT 428
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQ 336
PQS +R+E+ N+ + P I++PQ N+PVMGIVQ
Sbjct: 429 PQSENSRSELLNLALVPNHIVSPQANKPVMGIVQ 462
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELV G +PGAK I+RD+G++IDLR+ + SD++L+ GY VERH+++GD+V+FNRQ
Sbjct: 325 MKELVENGPGIHPGAKSIIRDDGKQIDLRWVQRTSDMNLEPGYIVERHLQNGDVVLFNRQ 384
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H V++LPWSTFR+NL +
Sbjct: 385 PSLHKMSMMAHHVKILPWSTFRINLSV 411
>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
Length = 1028
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V G S+YPGAK+I+ +G +D+ LQ GY VERH+ D DL++FNR
Sbjct: 306 RLKEKVENG-SEYPGAKFIIHKDGTSVDVELASDEYK-QLQPGYIVERHVEDDDLILFNR 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLP+STFR+N+S TSPYNADFDGDEMNLH+PQS+ +AE++ + +
Sbjct: 364 QPTLHKMSMMGHRVKVLPYSTFRLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMMM 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I++ Q N PV+ IVQD L MTKRDVFL+K
Sbjct: 424 VSKNIVSTQGNAPVIAIVQDALLGSVLMTKRDVFLEK 460
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 91/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D DL++FNRQPTLHKMSMMGHRV+VLP+STFR+N+S TSPYNADFDGDEMNLH+
Sbjct: 349 VERHVEDDDLILFNRQPTLHKMSMMGHRVKVLPYSTFRLNVSVTSPYNADFDGDEMNLHL 408
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ +AE++ + + + I++ Q N PV+ IVQD L MTKRDVFL+
Sbjct: 409 PQSLGAKAELQEMMMVSKNIVSTQGNAPVIAIVQDALLGSVLMTKRDVFLE 459
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
E V G S+YPGAK+I+ +G +D+ LQ GY VERH+ D DL++FNRQPT
Sbjct: 309 EKVENG-SEYPGAKFIIHKDGTSVDVELASDEYK-QLQPGYIVERHVEDDDLILFNRQPT 366
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV+VLP+STFR+N+ +
Sbjct: 367 LHKMSMMGHRVKVLPYSTFRLNVSV 391
>gi|119514096|gb|ABL75821.1| RNA polymerase II largest subunit [Aspicilia cinerea]
Length = 989
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 113/157 (71%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 303 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 363 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL V KM +RDVFL K
Sbjct: 423 VPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFLTK 459
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 78/111 (70%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 407 VPQSEETRAEVSQLCMVPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFL 457
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 304 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 364 XXXXXXXXXXXRVRVMPYSTFRLNLSV 390
>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 999
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 117/157 (74%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNR
Sbjct: 313 KLKNLIIRGPESHPGARYIIRENNERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPESHPGARYIIRENNERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741606|gb|ABV69508.1| RNA polymerase II largest subunit, partial [Bagliettoa steineri]
Length = 988
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 8/169 (4%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + + N+ ++ +LV G + +PGA++I+R++ ERIDLR+H S++ L+ G+KVERHI
Sbjct: 292 PETVTKWNMSKLKQLVVNGPNNHPGARFIIREHNERIDLRYHKNTSEIVLRTGWKVERHI 351
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E
Sbjct: 352 KDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 404
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 405 SRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 453
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIKDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + +PGA++I+R++ ERIDLR+H S++ L+ G+KVERHI+DGD ++FNRQP
Sbjct: 305 QLVVNGPNNHPGARFIIREHNERIDLRYHKNTSEIVLRTGWKVERHIKDGDYILFNRQPX 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 X-------XRVRVMPYSTFRLNLSV 382
>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
Length = 999
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 117/157 (74%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNR
Sbjct: 313 KLKNLIIRGPEHHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPEHHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
Length = 999
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 117/157 (74%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNR
Sbjct: 313 KLKNLIIRGPEHHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPEHHPGARYIIRENNERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 999
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 117/157 (74%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNR
Sbjct: 313 KLKNLIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPENHPGARYIIRENNERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741480|gb|ABV69445.1| RNA polymerase II largest subunit, partial [Bagliettoa parmigera]
Length = 988
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 8/169 (4%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + + N+ ++ +LV G + +PGA++I+R++ ERIDLR+H S++ L+ G+KVERHI
Sbjct: 292 PETVTKWNMSKLKQLVVNGPNNHPGARFIIREHNERIDLRYHKNTSEIVLRTGWKVERHI 351
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E
Sbjct: 352 KDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 404
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 405 SRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 453
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD ++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIKDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 399 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 449
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + +PGA++I+R++ ERIDLR+H S++ L+ G+KVERHI+DGD ++FNRQP
Sbjct: 305 QLVVNGPNNHPGARFIIREHNERIDLRYHKNTSEIVLRTGWKVERHIKDGDYILFNRQPX 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 X-------XRVRVMPYSTFRLNLSV 382
>gi|13274156|emb|CAC33868.1| RNA polymerase II largest subunit [Trachipleistophora hominis]
Length = 1056
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMN-LRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P N R+ LVR G +++PGA ++ R++G+RIDLRF+ + + L G
Sbjct: 263 RIHTFPEHVTAFNKARLEALVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCV 320
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ GD+V+FNRQP+LHKMSMM HR RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 321 VERHMTAGDVVLFNRQPSLHKMSMMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHM 380
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQ+ TRAE+ENI R +++ Q N+PVMGIVQD+L VRKMT VF++ E
Sbjct: 381 PQNHNTRAELENICGVDRNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFIEWYE 434
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 89/111 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ GD+V+FNRQP+LHKMSMM HR RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 321 VERHMTAGDVVLFNRQPSLHKMSMMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHM 380
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ+ TRAE+ENI R +++ Q N+PVMGIVQD+L VRKMT VF++
Sbjct: 381 PQNHNTRAELENICGVDRNVLSCQGNKPVMGIVQDSLVGVRKMTDDGVFIE 431
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G +++PGA ++ R++G+RIDLRF+ + + L G VERH+ GD+V+FNRQP+L
Sbjct: 282 LVRNGPNKWPGANFVTREDGQRIDLRFNR--NSILLTEGCVVERHMTAGDVVLFNRQPSL 339
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HR RV+ TFR+NL +
Sbjct: 340 HKMSMMAHRARVMKGKTFRLNLSV 363
>gi|123979346|gb|ABM81498.1| RNA polymerase II largest subunit [Nephroma parile]
Length = 979
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 115/157 (73%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNR
Sbjct: 302 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNR 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+L TFR+NLS T+PYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 362 QPSLXXXXXXXXXXXXXXXXTFRLNLSVTTPYNADFDGDEMNLHVPQSEETRAEVNQLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD+FL+K
Sbjct: 422 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLNK 458
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 80/112 (71%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD +IFNRQP+L TFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIIDGDYIIFNRQPSLXXXXXXXXXXXXXXXXTFRLNLSVTTPYNADFDGDEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RD+FL+
Sbjct: 406 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLN 457
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD +IFNRQ
Sbjct: 303 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQ 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+L TFR+NL +
Sbjct: 363 PSLXXXXXXXXXXXXXXXXTFRLNLSV 389
>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia
viridescens]
Length = 999
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 117/157 (74%), Gaps = 7/157 (4%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNR
Sbjct: 313 KLKNLIIRGPENHPGARYIIRENNERIDLRYHKDLKGITLKTGWKVERHIMDGDIILFNR 372
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + +
Sbjct: 373 QPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCM 425
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 426 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
L+ RG +PGA+YI+R+N ERIDLR+H + L+ G+KVERHI DGD+++FNRQP
Sbjct: 317 LIIRGPENHPGARYIIRENNERIDLRYHKDLKGITLKTGWKVERHIMDGDIILFNRQPXX 376
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 377 -------XRVRVMPYSTFRLNLSV 393
>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
Length = 999
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 122/172 (70%), Gaps = 8/172 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ +LV G +PGA+YI+R++ ERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKQLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+ +FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHIMDGDVTLFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD FL +
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDEFLSR 462
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 97/150 (64%), Gaps = 13/150 (8%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
+H R II N R + +DT K+ KVERHI DGD+ +FNRQP
Sbjct: 324 MHPGARYIIREHNERIDLRYHKDTSQIALKVGW------KVERHIMDGDVTLFNRQPXXX 377
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ + + P I
Sbjct: 378 -------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLNI 430
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
++PQ N P+MGIVQDTL + K+ +RD FL
Sbjct: 431 VSPQRNGPLMGIVQDTLCGIYKICRRDEFL 460
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +PGA+YI+R++ ERIDLR+H S + L+ G+KVERHI DGD+ +FNRQP
Sbjct: 316 QLVTNGPEMHPGARYIIREHNERIDLRYHKDTSQIALKVGWKVERHIMDGDVTLFNRQPX 375
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 376 X-------XRVRVMPYSTFRLNLSV 393
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
Length = 1663
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNR
Sbjct: 372 RLTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNR 429
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 430 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 489
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD++ K+T++D FLDK
Sbjct: 490 VPKNFVSPNKSAPCMGIVQDSVLGSYKLTEKDTFLDK 526
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 106/144 (73%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 388 IIRPNGNVTKLALVKD-----RSAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 441
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 442 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 501
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD++ K+T++D FLD
Sbjct: 502 PCMGIVQDSVLGSYKLTEKDTFLD 525
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNRQ
Sbjct: 373 LTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQ 430
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 431 PTLHRMSMMGHRVRVLNYNTFRLNL 455
>gi|327242119|gb|AEA40838.1| RNA polymerase II largest subunit [Trichomonas gallinae]
Length = 1019
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA Y+ D+G + DL F S + L GY
Sbjct: 305 KILTFPEIVTTTNQKWLESIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYI 364
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 89/110 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+V +G+ GA Y+ D+G + DL F S + L GY V+RHIRD D+VIFNRQP+
Sbjct: 323 SIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPS 382
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++P TFR+NL
Sbjct: 383 LHKMSMMGHRALLMPARTFRLNL 405
>gi|327242139|gb|AEA40848.1| RNA polymerase II largest subunit [Trichomonas gallinae]
Length = 1019
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA Y+ D+G + DL F S + L GY
Sbjct: 305 KILTFPEIVTTTNQKWLESIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYI 364
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 89/110 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+V +G+ GA Y+ D+G + DL F S + L GY V+RHIRD D+VIFNRQP+
Sbjct: 323 SIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPS 382
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++P TFR+NL
Sbjct: 383 LHKMSMMGHRALLMPARTFRLNL 405
>gi|13274158|emb|CAC33864.1| RNA polymerase II largest subunit [Pleistophora typicalis]
Length = 1117
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 122/159 (76%), Gaps = 2/159 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +VR G +++PGA ++ R++ ++I LRF+ + + L G VERH+ D D+V+FNR
Sbjct: 333 RLERMVRNGPNRWPGANFVTREDEQKIGLRFNR--NSVLLTEGCVVERHMADNDIVLFNR 390
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNL++PQS TRAE+EN+ +
Sbjct: 391 QPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLNMPQSFNTRAELENLCI 450
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+ +++ Q N+PVMGIVQD+L VRKMT +DVF+++ E
Sbjct: 451 VAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIERYE 489
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ D D+V+FNRQPTLHKMSMM HR R++ TFR+NLS T+PYNADFDGDEMNL++
Sbjct: 376 VERHMADNDIVLFNRQPTLHKMSMMAHRARIMKGKTFRLNLSVTTPYNADFDGDEMNLNM 435
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TRAE+EN+ + + +++ Q N+PVMGIVQD+L VRKMT +DVF++
Sbjct: 436 PQSFNTRAELENLCIVAKNVVSCQGNKPVMGIVQDSLVGVRKMTGQDVFIE 486
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+VR G +++PGA ++ R++ ++I LRF+ + + L G VERH+ D D+V+FNRQPTL
Sbjct: 337 MVRNGPNRWPGANFVTREDEQKIGLRFNR--NSVLLTEGCVVERHMADNDIVLFNRQPTL 394
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
HKMSMM HR R++ TFR+NL +
Sbjct: 395 HKMSMMAHRARIMKGKTFRLNLSV 418
>gi|327242127|gb|AEA40842.1| RNA polymerase II largest subunit [Trichomonas tenax]
Length = 1016
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA Y+ D+G + DL F S + L GY
Sbjct: 305 KILTFPEIVTTTNQKWLESIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYV 364
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQTARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 89/110 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
V+RHIRD D+VIFNRQP+LHKMSMMGHR ++P TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAEV +I P+QII+PQ NRPV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQTARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCRLLSKRDTFL 474
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+V +G+ GA Y+ D+G + DL F S + L GY V+RHIRD D+VIFNRQP+
Sbjct: 323 SIVMKGHDDIGGANYVTNDHGTKTDLAFCNDLSTIALSPGYVVDRHIRDNDIVIFNRQPS 382
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++P TFR+NL
Sbjct: 383 LHKMSMMGHRALLMPARTFRLNL 405
>gi|149794935|gb|ABR31763.1| RNA polymerase II largest subunit [Capronia munkii]
Length = 991
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL R+ LV G ++ PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 294 RTLTYPETVTPFNLDRLKRLVANGPTELPGARYVIRDTGERIDLRHHKRAGEMTLQYGWK 353
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+++FNRQP +P+STFR NLS T+PYN DFDGDEMNLHV
Sbjct: 354 VERHIQDGDVILFNRQPXXXXXXXXXXXXXXMPYSTFRXNLSVTTPYNXDFDGDEMNLHV 413
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 414 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFL 463
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 82/111 (73%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+++FNRQP +P+STFR NLS T+PYN DFDGDEMNLH
Sbjct: 353 KVERHIQDGDVILFNRQPXXXXXXXXXXXXXXMPYSTFRXNLSVTTPYNXDFDGDEMNLH 412
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 413 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFL 463
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 57/84 (67%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G ++ PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+++FNRQP
Sbjct: 313 LVANGPTELPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVILFNRQPXX 372
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
+P+STFR NL +
Sbjct: 373 XXXXXXXXXXXXMPYSTFRXNLSV 396
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 114/152 (75%), Gaps = 3/152 (1%)
Query: 90 LVRRGNSQYPGAKYIVR-DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
LV G + +PGA Y++ D + DLR P L+ G++VERHI DGD +IFNRQP+
Sbjct: 327 LVETGPNLHPGANYVINMDRTKTWDLRRVKNPP--RLEYGWQVERHIDDGDYIIFNRQPS 384
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHK SMMGHRV+V+PWSTFR+NLS T PYNADFDGDEMNLHVPQ+ TRAEV+ + + P
Sbjct: 385 LHKESMMGHRVKVMPWSTFRLNLSVTGPYNADFDGDEMNLHVPQTEATRAEVKELCMVPH 444
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 445 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 476
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI DGD +IFNRQP+LHK SMMGHRV+V+PWSTFR+NLS T PYNADFDGDEMNLH
Sbjct: 366 QVERHIDDGDYIIFNRQPSLHKESMMGHRVKVMPWSTFRLNLSVTGPYNADFDGDEMNLH 425
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ TRAEV+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 426 VPQTEATRAEVKELCMVPHNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 476
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 4 LVRRGNSQYPGAKYIVR-DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
LV G + +PGA Y++ D + DLR P L+ G++VERHI DGD +IFNRQP+
Sbjct: 327 LVETGPNLHPGANYVINMDRTKTWDLRRVKNPP--RLEYGWQVERHIDDGDYIIFNRQPS 384
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHK SMMGHRV+V+PWSTFR+NL +
Sbjct: 385 LHKESMMGHRVKVMPWSTFRLNLSV 409
>gi|119514066|gb|ABL75806.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 989
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 113/157 (71%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T PYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 363 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLHVPQSEETRAEVNQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + KM +RDVFL K
Sbjct: 423 VPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTK 459
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 77/111 (69%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD RVRV+P+STFR+NLS T PYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGDXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + KM +RDVFL
Sbjct: 407 VPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFL 457
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 58/87 (66%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DGD
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 364 XXXXXXXXXXXRVRVMPYSTFRLNLSV 390
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 131/200 (65%), Gaps = 33/200 (16%)
Query: 76 LPWS-----TFRMNLRMF------ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPS 121
+PWS TF + F +LV G + PG AK+I+R++G R+ L +
Sbjct: 354 VPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPGETGAKHIIREDGRRVSLAVVKGDA 413
Query: 122 DLHLQCGYKV-------------------ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 162
D L+ G KV ERH+ +GDLV+FNRQP+LHKMSMMGHRVR+L
Sbjct: 414 DRRLEPGDKVGGKGTQMTADGGGVARCCVERHLINGDLVLFNRQPSLHKMSMMGHRVRIL 473
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
P+STFR+NLS T+PYNADFDGDEMN+HV Q+ ETRAE+ N+ + PR I++PQ N+PVMGI
Sbjct: 474 PYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETRAEMANLMMVPRNIVSPQANKPVMGI 533
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQD L R MTKRD+F++K
Sbjct: 534 VQDALLGTRMMTKRDIFIEK 553
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 97/111 (87%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GDLV+FNRQP+LHKMSMMGHRVR+LP+STFR+NLS T+PYNADFDGDEMN+HV
Sbjct: 442 VERHLINGDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHV 501
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
Q+ ETRAE+ N+ + PR I++PQ N+PVMGIVQD L R MTKRD+F++
Sbjct: 502 AQTHETRAEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDIFIE 552
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 19/93 (20%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQCGYKV-------------------ERHIRDGDL 54
GAK+I+R++G R+ L +D L+ G KV ERH+ +GDL
Sbjct: 392 GAKHIIREDGRRVSLAVVKGDADRRLEPGDKVGGKGTQMTADGGGVARCCVERHLINGDL 451
Query: 55 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
V+FNRQP+LHKMSMMGHRVR+LP+STFR+NL +
Sbjct: 452 VLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSV 484
>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
Length = 1657
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R S YP A YI+R NG L S +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--STYPSANYIMRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
I+ P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 IMRPNGNVTKLALVKD-----RSAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R S YP A YI+R NG L S +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--STYPSANYIMRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
Length = 1662
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 IIRPNGNVTKLALVKD-----RSAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|402581043|gb|EJW74992.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 270
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/107 (76%), Positives = 100/107 (93%)
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+
Sbjct: 1 MKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSL 60
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
ET+AEV I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 61 ETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 107
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/107 (76%), Positives = 100/107 (93%)
Query: 247 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 306
++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+
Sbjct: 1 MKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSL 60
Query: 307 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
ET+AEV I + PRQ+ITPQ N+PVMGIVQDTLTAVR MTKRDVF++
Sbjct: 61 ETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVRMMTKRDVFIE 107
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 38/39 (97%)
Query: 49 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
++DGD+++FNRQPTLHKMSMMGH+V++LPWSTFR+NL +
Sbjct: 1 MKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNLSV 39
>gi|327242109|gb|AEA40833.1| RNA polymerase II largest subunit [Monocercomonas colubrorum]
Length = 1019
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 111/152 (73%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G GA YI+ G RI+L + S LHL VERH+R+ D+VIFNRQP+
Sbjct: 326 KLVHNGPDHQDGANYIITPTGIRINLAVTEERSALHLADNAIVERHLREDDIVIFNRQPS 385
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHR ++P STFR+NL T+PYNADFDGDEMNLHVPQS RAEV++I + P
Sbjct: 386 LHKMSMMGHRAHLMPGSTFRLNLCVTTPYNADFDGDEMNLHVPQSQSARAEVKHIMLVPN 445
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
QIITPQ+N+P++G+VQD L A R MT RD FL
Sbjct: 446 QIITPQSNKPIIGLVQDALLACRLMTLRDTFL 477
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 92/110 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+R+ D+VIFNRQP+LHKMSMMGHR ++P STFR+NL T+PYNADFDGDEMNLHV
Sbjct: 368 VERHLREDDIVIFNRQPSLHKMSMMGHRAHLMPGSTFRLNLCVTTPYNADFDGDEMNLHV 427
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAEV++I + P QIITPQ+N+P++G+VQD L A R MT RD FL
Sbjct: 428 PQSQSARAEVKHIMLVPNQIITPQSNKPIIGLVQDALLACRLMTLRDTFL 477
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 56/83 (67%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G GA YI+ G RI+L + S LHL VERH+R+ D+VIFNRQP+
Sbjct: 326 KLVHNGPDHQDGANYIITPTGIRINLAVTEERSALHLADNAIVERHLREDDIVIFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++P STFR+NL
Sbjct: 386 LHKMSMMGHRAHLMPGSTFRLNL 408
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--TVYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 6/151 (3%)
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
++ + II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH
Sbjct: 380 VYPSANYIIRPNGNVTKLALVKD-----RSAVHLDVG-DVVERHVIDGDVVLFNRQPTLH 433
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 322
+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+
Sbjct: 434 RMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNF 493
Query: 323 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
++P + P MGIVQD+L ++T +D F+D
Sbjct: 494 VSPNKSAPCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L S +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--TVYPSANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
Length = 1662
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 IIRPNGNVTKLALVKD-----RNAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|125657576|gb|ABN48851.1| RNA polymerase II largest subunit [Globigerinella siphonifera]
Length = 460
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + NL RM +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI
Sbjct: 312 PERVTKFNLHRMKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHI 371
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
++GD+V+FNRQP+LHKMSMM H V++LPWSTFRMNLS TSPYNADFDGDEMNLHVPQS
Sbjct: 372 QNGDIVLFNRQPSLHKMSMMAHHVKILPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSEN 431
Query: 196 TRAEVENIHVTPRQIITPQNNRP 218
RAE+ + P QI+TPQ N P
Sbjct: 432 ARAELTLLAKVPTQIVTPQRNSP 454
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 74/88 (84%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI++GD+V+FNRQP+LHKMSMM H V++LPWSTFRMNLS TSPYNADFDGDEMNLHV
Sbjct: 367 VERHIQNGDIVLFNRQPSLHKMSMMAHHVKILPWSTFRMNLSVTSPYNADFDGDEMNLHV 426
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRP 330
PQS RAE+ + P QI+TPQ N P
Sbjct: 427 PQSENARAELTLLAKVPTQIVTPQRNSP 454
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 74/87 (85%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +++PGAK I+RD+G++IDLR+ + SD++L+ GY VERHI++GD+V+FNRQ
Sbjct: 323 MKQLVENGPNEHPGAKTIIRDDGKQIDLRWVGRTSDMNLEPGYIVERHIQNGDIVLFNRQ 382
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM H V++LPWSTFRMNL +
Sbjct: 383 PSLHKMSMMAHHVKILPWSTFRMNLSV 409
>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
Length = 1662
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 IIRPNGNVTKLALVKD-----RNAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [Cystosporogenes operophterae]
Length = 982
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 130/188 (69%), Gaps = 3/188 (1%)
Query: 72 RVRVLPWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
+V P N+ ELV RG +++PGA Y++R +G+RIDL F+ +L L+ G+
Sbjct: 266 KVHTFPEKVNSFNIDYLQELVDRGPNEHPGANYLIRSDGQRIDLNFNRH--ELKLEKGFI 323
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+++ D V+FNRQP+LHKMSMMGHR +++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 324 VERHMQNNDEVLFNRQPSLHKMSMMGHRAKIMQGKTFRLNLSATSPYNADFDGDEMNLHM 383
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDG 250
PQS +++E+ ++ +QI++PQ+N+PV+GIVQDTL T RD F + E
Sbjct: 384 PQSYPSKSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFFKRAEAMSLLY 443
Query: 251 DLVIFNRQ 258
+L +F ++
Sbjct: 444 NLNVFGKK 451
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+++ D V+FNRQP+LHKMSMMGHR +++ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 324 VERHMQNNDEVLFNRQPSLHKMSMMGHRAKIMQGKTFRLNLSATSPYNADFDGDEMNLHM 383
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS +++E+ ++ +QI++PQ+N+PV+GIVQDTL T RD F
Sbjct: 384 PQSYPSKSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFF 433
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG +++PGA Y++R +G+RIDL F+ +L L+ G+ VERH+++ D V+FNRQP+
Sbjct: 284 ELVDRGPNEHPGANYLIRSDGQRIDLNFNRH--ELKLEKGFIVERHMQNNDEVLFNRQPS 341
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR +++ TFR+NL
Sbjct: 342 LHKMSMMGHRAKIMQGKTFRLNL 364
>gi|226876217|gb|ACO89429.1| RNA polymerase II largest subunit, partial [Chaetothyriomycetidae
sp. TRN242]
Length = 980
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 4/159 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+Y++RDNGER+DL++H + ++ LQ G+KVERHI DGD+
Sbjct: 306 KLKKLVANGPNEHPGARYVIRDNGERLDLKYHKRAGEITLQYGWKVERHIVDGDVX---- 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 362 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELANLCM 421
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL V K+ +RDVFL + E
Sbjct: 422 VPLNIVSPQRNSPLMGIVQDTLAGVYKICRRDVFLSREE 460
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+ RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 350 KVERHIVDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 405
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL V K+ +RDVFL
Sbjct: 406 VPQSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLAGVYKICRRDVFL 456
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+Y++RDNGER+DL++H + ++ LQ G+KVERHI DGD+
Sbjct: 309 KLVANGPNEHPGARYVIRDNGERLDLKYHKRAGEITLQYGWKVERHIVDGDVX----XXX 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 XXXXXXXXXRVRVMPYSTFRLNLSV 389
>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
Length = 1665
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNR
Sbjct: 371 RLTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
II P N + +V+D R DV D VERH+ DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 IIRPNGNVTKLALVKD-----RNAVHLDVG-DVVERHVIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E V+R + YP A YI+R NG L + +HL G VERH+ DGD+V+FNRQ
Sbjct: 372 LTEFVQR--TTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQ 429
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 430 PTLHRMSMMGHRVRVLNYNTFRLNL 454
>gi|327242111|gb|AEA40834.1| RNA polymerase II largest subunit [Monocercomonas sp. ATCC 50210]
Length = 1019
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 111/154 (72%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV G GA YI+ G RI+L + S LHL VERH+RD D+VIFNRQP+
Sbjct: 326 QLVYNGPDAQQGANYIITPQGIRINLAVTEERSALHLNDNAIVERHLRDDDIVIFNRQPS 385
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMSMMGHR ++P STFR+NL T+PYNADFDGDEMNLHVPQS RAEV++I P
Sbjct: 386 LHKMSMMGHRAYLMPGSTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARAEVKHIMFVPN 445
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QII+PQ N+P++G+VQD L A R MT RD FL++
Sbjct: 446 QIISPQANKPIIGLVQDALLACRLMTLRDTFLNR 479
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 104/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
IITPQ R + + ++ + + + VERH+RD D+VIFNRQP+LHKMSMMGH
Sbjct: 341 IITPQGIRINLAVTEER--SALHLNDNAI----VERHLRDDDIVIFNRQPSLHKMSMMGH 394
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
R ++P STFR+NL T+PYNADFDGDEMNLHVPQS RAEV++I P QII+PQ N+
Sbjct: 395 RAYLMPGSTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARAEVKHIMFVPNQIISPQANK 454
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P++G+VQD L A R MT RD FL+
Sbjct: 455 PIIGLVQDALLACRLMTLRDTFLN 478
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 56/83 (67%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G GA YI+ G RI+L + S LHL VERH+RD D+VIFNRQP+
Sbjct: 326 QLVYNGPDAQQGANYIITPQGIRINLAVTEERSALHLNDNAIVERHLRDDDIVIFNRQPS 385
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++P STFR+NL
Sbjct: 386 LHKMSMMGHRAYLMPGSTFRLNL 408
>gi|157741596|gb|ABV69503.1| RNA polymerase II largest subunit, partial [Wahlenbergiella mucosa]
Length = 999
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 120/169 (71%), Gaps = 8/169 (4%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + + N+ R+ +LV G + +PGAKY++R G+RIDLR + LQ G KVERH+
Sbjct: 303 PETVTKFNIGRLSQLVANGPNVHPGAKYVIRKQGDRIDLRHVKSSRGVELQTGMKVERHL 362
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E
Sbjct: 363 LDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 415
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 416 SRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 464
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 86/111 (77%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLLDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G + +PGAKY++R G+RIDLR + LQ G KVERH+ DGD+++FNRQ
Sbjct: 314 LSQLVANGPNVHPGAKYVIRKQGDRIDLRHVKSSRGVELQTGMKVERHLLDGDVILFNRQ 373
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P RVRV+P+STFR+NL +
Sbjct: 374 PXX-------XRVRVMPYSTFRLNLSV 393
>gi|342850752|gb|AEL74957.1| DNA-directed RNA polymerase II largest subunit [Ichthyobodo-related
endosymbiont of Neoparamoeba]
Length = 510
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 116/159 (72%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV++G +PGA +I++ NG+R+ L+ L L G VERH+ +GD+V+FNR
Sbjct: 318 RLTSLVQKGPDVHPGANFIIQPNGDRVSLKNVRSREKLLLAPGSIVERHLLNGDVVLFNR 377
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVR+LP +TFRMNLS T+PYNADFDGDEMNLHVPQSM T+AE+ +
Sbjct: 378 QPTLHRMSMMGHRVRILPHNTFRMNLSTTTPYNADFDGDEMNLHVPQSMLTKAELMEFMM 437
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P+ I P PVMGI QD+LT V +T+RD F+D E
Sbjct: 438 VPKNFINPGRGHPVMGINQDSLTGVYLLTRRDTFIDWSE 476
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 90/111 (81%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD+V+FNRQPTLH+MSMMGHRVR+LP +TFRMNLS T+PYNADFDGDEMNLHV
Sbjct: 363 VERHLLNGDVVLFNRQPTLHRMSMMGHRVRILPHNTFRMNLSTTTPYNADFDGDEMNLHV 422
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQSM T+AE+ + P+ I P PVMGI QD+LT V +T+RD F+D
Sbjct: 423 PQSMLTKAELMEFMMVPKNFINPGRGHPVMGINQDSLTGVYLLTRRDTFID 473
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 62/83 (74%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
LV++G +PGA +I++ NG+R+ L+ L L G VERH+ +GD+V+FNRQPT
Sbjct: 321 SLVQKGPDVHPGANFIIQPNGDRVSLKNVRSREKLLLAPGSIVERHLLNGDVVLFNRQPT 380
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MSMMGHRVR+LP +TFRMNL
Sbjct: 381 LHRMSMMGHRVRILPHNTFRMNL 403
>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
Length = 1721
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 115/170 (67%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P +N + E +V +G GA +I+ D G + DL+F K + +L GY
Sbjct: 383 KILTFPEVVTTLNQKWLEGIVAKGPDAEGGANFIISDTGTKTDLQFCQKINTQNLSPGYT 442
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 443 VERHLRDNDIVIFNRQPSLHKMSMMGHRAFLMSGKTFRLNLCVTTPYNADFDGDEMNLHV 502
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS RAEV +I P QII+PQ N+P++G+VQD L R ++ +D FL
Sbjct: 503 PQSQTARAEVRHIMAVPYQIISPQANKPIIGLVQDALLGSRLLSMKDTFL 552
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 86/110 (78%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 443 VERHLRDNDIVIFNRQPSLHKMSMMGHRAFLMSGKTFRLNLCVTTPYNADFDGDEMNLHV 502
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS RAEV +I P QII+PQ N+P++G+VQD L R ++ +D FL
Sbjct: 503 PQSQTARAEVRHIMAVPYQIISPQANKPIIGLVQDALLGSRLLSMKDTFL 552
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G GA +I+ D G + DL+F K + +L GY VERH+RD D+VIFNRQP+L
Sbjct: 402 IVAKGPDAEGGANFIISDTGTKTDLQFCQKINTQNLSPGYTVERHLRDNDIVIFNRQPSL 461
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 462 HKMSMMGHRAFLMSGKTFRLNL 483
>gi|157741608|gb|ABV69509.1| RNA polymerase II largest subunit, partial [Wahlenbergiella
striatula]
Length = 999
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 119/169 (70%), Gaps = 8/169 (4%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P + + N+ R+ +LV G + +PGAKY+VR GERIDLR + LQ G KVERH+
Sbjct: 303 PETVTKFNIGRLSQLVANGPNVHPGAKYVVRKQGERIDLRHMKTSRGVELQTGMKVERHL 362
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
D D+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E
Sbjct: 363 MDEDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 415
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 416 SRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 464
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 85/111 (76%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D+++FNRQP RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDEDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G + +PGAKY+VR GERIDLR + LQ G KVERH+ D D+++FNRQ
Sbjct: 314 LSQLVANGPNVHPGAKYVVRKQGERIDLRHMKTSRGVELQTGMKVERHLMDEDVILFNRQ 373
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P RVRV+P+STFR+NL +
Sbjct: 374 PXX-------XRVRVMPYSTFRLNLSV 393
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
Length = 1879
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 133/213 (62%), Gaps = 46/213 (21%)
Query: 76 LPWS-----TFRMNLRMF------ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPS 121
+PWS TF + F +LV G + PG AK+I+R++G RI+L +
Sbjct: 350 VPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPGETGAKHIIREDGRRINLAVLKSGA 409
Query: 122 DLHLQ---------CG-----------------------YKVERHIRDGDLVIFNRQPTL 149
D L+ CG +VERH+ +GDLV+FNRQP+L
Sbjct: 410 DRRLEPGDKVGGFFCGRSHRRHTYTHSHSHRVFLQRASHLQVERHLTNGDLVLFNRQPSL 469
Query: 150 HKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 209
HKMSMMGHRVR+LP+STFR+NLS T+PYNADFDGDEMN+HV Q+ ETRAE+ + + PR
Sbjct: 470 HKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETRAEMRELMMVPRN 529
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
I++PQ N+PVMGIVQD+L R MTKRD+F++K
Sbjct: 530 IVSPQANKPVMGIVQDSLLGTRLMTKRDIFIEK 562
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 98/112 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH+ +GDLV+FNRQP+LHKMSMMGHRVR+LP+STFR+NLS T+PYNADFDGDEMN+H
Sbjct: 450 QVERHLTNGDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMH 509
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
V Q+ ETRAE+ + + PR I++PQ N+PVMGIVQD+L R MTKRD+F++
Sbjct: 510 VAQTHETRAEMRELMMVPRNIVSPQANKPVMGIVQDSLLGTRLMTKRDIFIE 561
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 32/106 (30%)
Query: 14 GAKYIVRDNGERIDLRFHPKPSDLHLQ---------CG---------------------- 42
GAK+I+R++G RI+L +D L+ CG
Sbjct: 388 GAKHIIREDGRRINLAVLKSGADRRLEPGDKVGGFFCGRSHRRHTYTHSHSHRVFLQRAS 447
Query: 43 -YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
+VERH+ +GDLV+FNRQP+LHKMSMMGHRVR+LP+STFR+NL +
Sbjct: 448 HLQVERHLTNGDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSV 493
>gi|342850748|gb|AEL74955.1| DNA-directed RNA polymerase II largest subunit [Ichthyobodo-related
endosymbiont of Neoparamoeba]
Length = 510
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 115/159 (72%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ LV+RG +PGA +I++ NG+R+ L+ L L G VERH+ +GD+V+FNR
Sbjct: 318 RLTSLVQRGPDVHPGANFIIQPNGDRVSLKNVRSREKLLLAPGSIVERHLLNGDVVLFNR 377
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MS MGHRVR+LP +TFRMNLS T+PYNADFDGDEMNLHVPQSM T+AE+ +
Sbjct: 378 QPTLHRMSTMGHRVRILPHNTFRMNLSTTTPYNADFDGDEMNLHVPQSMLTKAELMEFMM 437
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P+ I P PVMGI QD+LT V +T+RD F+D E
Sbjct: 438 VPKNFINPGRGHPVMGINQDSLTGVYLLTRRDTFIDWSE 476
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 89/111 (80%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD+V+FNRQPTLH+MS MGHRVR+LP +TFRMNLS T+PYNADFDGDEMNLHV
Sbjct: 363 VERHLLNGDVVLFNRQPTLHRMSTMGHRVRILPHNTFRMNLSTTTPYNADFDGDEMNLHV 422
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQSM T+AE+ + P+ I P PVMGI QD+LT V +T+RD F+D
Sbjct: 423 PQSMLTKAELMEFMMVPKNFINPGRGHPVMGINQDSLTGVYLLTRRDTFID 473
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
LV+RG +PGA +I++ NG+R+ L+ L L G VERH+ +GD+V+FNRQPT
Sbjct: 321 SLVQRGPDVHPGANFIIQPNGDRVSLKNVRSREKLLLAPGSIVERHLLNGDVVLFNRQPT 380
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MS MGHRVR+LP +TFRMNL
Sbjct: 381 LHRMSTMGHRVRILPHNTFRMNL 403
>gi|119514058|gb|ABL75802.1| RNA polymerase II largest subunit [Psora rubiformis]
Length = 973
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 114/157 (72%), Gaps = 16/157 (10%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DG +
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGGYI---- 358
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + +
Sbjct: 359 ------------RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCM 406
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 407 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 443
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 78/111 (70%), Gaps = 16/111 (14%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DG + RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVDGGYI----------------RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 390
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE+ + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 391 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 441
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 16/87 (18%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI DG +
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGGYI----- 358
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 359 -----------RVRVMPYSTFRLNLSV 374
>gi|327242117|gb|AEA40837.1| RNA polymerase II largest subunit [Trichomonas sp. RWG-2007-1]
Length = 998
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P +N + E +V++G GA Y++ D G R DL + L GY
Sbjct: 287 KILTFPEVVTPINQKWLESIVQKGADSIGGANYVINDRGTRTDLSLCHDIMQVTLSNGYI 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 347 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 406
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 407 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 456
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 347 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 406
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 407 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 456
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+V++G GA Y++ D G R DL + L GY VERH+RD D+VIFNRQP+
Sbjct: 305 SIVQKGADSIGGANYVINDRGTRTDLSLCHDIMQVTLSNGYIVERHLRDDDIVIFNRQPS 364
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR ++ TFR+NL
Sbjct: 365 LHKMSMMGHRALIMSGRTFRLNL 387
>gi|183233415|ref|XP_651781.2| DNA-directed RNA polymerase II large subunit [Entamoeba histolytica
HM-1:IMSS]
gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit [Entamoeba histolytica]
gi|169801584|gb|EAL46395.2| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709040|gb|EMD48386.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
histolytica KU27]
Length = 1636
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNR
Sbjct: 384 KLQKLVSAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNR 439
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNLHVPQ++E RAEV + +
Sbjct: 440 QPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLML 499
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
TP QIITPQ+N P+MGIVQDT +TKR+ F++++
Sbjct: 500 TPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIEQL 537
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D V R+I +GD VIFNRQP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNL
Sbjct: 423 DTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNL 482
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ++E RAEV + +TP QIITPQ+N P+MGIVQDT +TKR+ F++
Sbjct: 483 HVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIE 535
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNRQP+
Sbjct: 387 KLVSAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNRQPS 442
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MSMMGH+VRVLP+STFRMNL
Sbjct: 443 LHRMSMMGHKVRVLPFSTFRMNL 465
>gi|407039913|gb|EKE39890.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
nuttalli P19]
Length = 1635
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNR
Sbjct: 383 KLQKLVNAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNR 438
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNLHVPQ++E RAEV + +
Sbjct: 439 QPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLML 498
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
TP QIITPQ+N P+MGIVQDT +TKR+ F++++
Sbjct: 499 TPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIEQL 536
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D V R+I +GD VIFNRQP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNL
Sbjct: 422 DTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNL 481
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ++E RAEV + +TP QIITPQ+N P+MGIVQDT +TKR+ F++
Sbjct: 482 HVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIE 534
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNRQP+
Sbjct: 386 KLVNAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNRQPS 441
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MSMMGH+VRVLP+STFRMNL
Sbjct: 442 LHRMSMMGHKVRVLPFSTFRMNL 464
>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1662
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ + V+R YP A Y++R NG L S ++L G VERHI DGD+V+FNR
Sbjct: 371 RLTDFVQR--VTYPSANYVIRPNGNVTKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNR 428
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 429 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 488
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D F+DK
Sbjct: 489 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDK 525
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 6/144 (4%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
+I P N + +V+D R DV D VERHI DGD+V+FNRQPTLH+MSMMGH
Sbjct: 387 VIRPNGNVTKLALVKD-----RSAVNLDVG-DVVERHIIDGDVVLFNRQPTLHRMSMMGH 440
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + + P+ ++P +
Sbjct: 441 RVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 500
Query: 330 PVMGIVQDTLTAVRKMTKRDVFLD 353
P MGIVQD+L ++T +D F+D
Sbjct: 501 PCMGIVQDSLLGSYRLTDKDTFVD 524
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%)
Query: 12 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 71
YP A Y++R NG L S ++L G VERHI DGD+V+FNRQPTLH+MSMMGH
Sbjct: 381 YPSANYVIRPNGNVTKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNRQPTLHRMSMMGH 440
Query: 72 RVRVLPWSTFRMNL 85
RVRVL ++TFR+NL
Sbjct: 441 RVRVLNYNTFRLNL 454
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 152 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 211
MSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+TPRQII
Sbjct: 1 MSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQII 60
Query: 212 TPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 61 TPQANKPVMGIVQDTLTAVRKMTKRDVFITR 91
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/89 (94%), Positives = 88/89 (98%)
Query: 264 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 323
MSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+TPRQII
Sbjct: 1 MSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQII 60
Query: 324 TPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
TPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 61 TPQANKPVMGIVQDTLTAVRKMTKRDVFI 89
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 66 MSMMGHRVRVLPWSTFRMNL 85
MSMMGHRV+VLPWSTFRMNL
Sbjct: 1 MSMMGHRVKVLPWSTFRMNL 20
>gi|167376643|ref|XP_001733237.1| DNA-directed RNA polymerase II subunit RPB1 [Entamoeba dispar
SAW760]
gi|165904563|gb|EDR29776.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
dispar SAW760]
Length = 1619
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNR
Sbjct: 383 KLQKLVNAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNR 438
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNLHVPQ++E RAEV + +
Sbjct: 439 QPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLML 498
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
TP QIITPQ+N PVMGIVQDT +TKR+ F++++
Sbjct: 499 TPTQIITPQHNGPVMGIVQDTQCGSYLITKRETFIEQL 536
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D V R+I +GD VIFNRQP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNL
Sbjct: 422 DTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNL 481
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ++E RAEV + +TP QIITPQ+N PVMGIVQDT +TKR+ F++
Sbjct: 482 HVPQTLEARAEVATLMLTPTQIITPQHNGPVMGIVQDTQCGSYLITKRETFIE 534
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNRQP+
Sbjct: 386 KLVNAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNRQPS 441
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MSMMGH+VRVLP+STFRMNL
Sbjct: 442 LHRMSMMGHKVRVLPFSTFRMNL 464
>gi|57157185|dbj|BAD83622.1| RNA polymerase II subunit Rpb1 [Entamoeba histolytica]
Length = 1589
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 116/158 (73%), Gaps = 4/158 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNR
Sbjct: 337 KLQKLVSAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNR 392
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNLHVPQ++E RAEV + +
Sbjct: 393 QPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLML 452
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
TP QIITPQ+N P+MGIVQDT +TKR+ F++++
Sbjct: 453 TPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIEQL 490
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 94/113 (83%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D V R+I +GD VIFNRQP+LH+MSMMGH+VRVLP+STFRMNL T+PYNADFDGDEMNL
Sbjct: 376 DTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNL 435
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ++E RAEV + +TP QIITPQ+N P+MGIVQDT +TKR+ F++
Sbjct: 436 HVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLITKRETFIE 488
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G + YPGA + R NG+ L K D+ G V R+I +GD VIFNRQP+
Sbjct: 340 KLVSAGMNDYPGAFMLERKNGQTYRLNGSEKIIDI----GDTVHRYIMNGDYVIFNRQPS 395
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LH+MSMMGH+VRVLP+STFRMNL
Sbjct: 396 LHRMSMMGHKVRVLPFSTFRMNL 418
>gi|154414043|ref|XP_001580050.1| RNA polymerase II [Trichomonas vaginalis G3]
gi|121914263|gb|EAY19064.1| RNA polymerase II [Trichomonas vaginalis G3]
Length = 1661
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 385 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 445 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL +
Sbjct: 505 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTR 556
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 445 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 505 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 554
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 404 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 463
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 464 HKMSMMGHRALIMSGRTFRLNL 485
>gi|119514039|gb|ABL75792.1| RNA polymerase II largest subunit [Loxospora ochrophaea]
Length = 975
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI GD
Sbjct: 303 KLHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVGGDXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+ TFR+NLS T PYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 363 XXXXXXXXXXXXRVRVMPYXTFRLNLSVTGPYNADFDGDEMNLHVPQSEETRAEVSQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 423 VPLNIVSPQRNGPLMGIVQDTLCGIFKICRRDVFLTK 459
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 75/111 (67%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI GD RVRV+P+ TFR+NLS T PYNADFDGDEMNLH
Sbjct: 347 KVERHIVGGDXXXXXXXXXXXXXXXXXXRVRVMPYXTFRLNLSVTGPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 407 VPQSEETRAEVSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIFKICRRDVFL 457
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G +++PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI GD
Sbjct: 304 LHQLVKNGPNEHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVGGDXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+ TFR+NL +
Sbjct: 364 XXXXXXXXXXXRVRVMPYXTFRLNLSV 390
>gi|327242129|gb|AEA40843.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
gi|327242133|gb|AEA40845.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
gi|327242137|gb|AEA40847.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
Length = 1018
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 305 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 364
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL +
Sbjct: 425 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTR 476
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 474
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 324 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 383
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 384 HKMSMMGHRALIMSGRTFRLNL 405
>gi|327242135|gb|AEA40846.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
Length = 1018
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 305 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 364
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL +
Sbjct: 425 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTR 476
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 365 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 424
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 425 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 474
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 324 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 383
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 384 HKMSMMGHRALIMSGRTFRLNL 405
>gi|327242131|gb|AEA40844.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
Length = 1006
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 294 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 353
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 354 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 413
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 414 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 463
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 354 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 413
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 414 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 463
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 313 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 372
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 373 HKMSMMGHRALIMSGRTFRLNL 394
>gi|327242121|gb|AEA40839.1| RNA polymerase II largest subunit [Trichomonas sp. RWG-2007-2]
Length = 1019
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 306 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 365
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 366 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 425
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 426 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 475
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+NL T+PYNADFDGDEMNLHV
Sbjct: 366 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNLHV 425
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 426 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 475
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 325 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 384
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
HKMSMMGHR ++ TFR+NL
Sbjct: 385 HKMSMMGHRALIMSGRTFRLNL 406
>gi|226876225|gb|ACO89433.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN488]
Length = 985
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 303 KLARLVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX---- 358
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 359 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 418
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 419 VPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLNR 455
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 347 KVERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 402
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 403 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLN 454
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 307 LVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX----XXXX 362
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 363 XXXXXXXXRVRVMPYSTFRLNLSV 386
>gi|226876221|gb|ACO89431.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN475]
Length = 972
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 296 KLARLVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX---- 351
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 352 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 411
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL++
Sbjct: 412 VPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLNR 448
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 340 KVERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 395
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL+
Sbjct: 396 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLN 447
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 300 LVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX----XXXX 355
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 356 XXXXXXXXRVRVMPYSTFRLNLSV 379
>gi|336091018|gb|AEI00186.1| RNA polymerase II largest subunit [Capronia peltigerae]
Length = 973
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 15/172 (8%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ R+ V G +++PGA+Y +R +G+RIDLR K D++LQ G+K
Sbjct: 295 RTLTFPETVTNFNIERLKRCVANGPTEWPGARYAIRGSGDRIDLRHAKKSGDINLQYGWK 354
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD+++FNRQP+L FR+NLS TSPYNADFDGDEMNLHV
Sbjct: 355 VERHIVDGDIILFNRQPSLX--------------XXFRLNLSVTSPYNADFDGDEMNLHV 400
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E RAE+ + + PR I++PQ N P+MGIVQDTL V K+T+RDVFL K
Sbjct: 401 PQSQEARAELLQLCMVPRNIVSPQKNAPLMGIVQDTLCGVYKLTRRDVFLTK 452
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 80/111 (72%), Gaps = 14/111 (12%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+++FNRQP+L FR+NLS TSPYNADFDGDEMNLH
Sbjct: 354 KVERHIVDGDIILFNRQPSLX--------------XXFRLNLSVTSPYNADFDGDEMNLH 399
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE+ + + PR I++PQ N P+MGIVQDTL V K+T+RDVFL
Sbjct: 400 VPQSQEARAELLQLCMVPRNIVSPQKNAPLMGIVQDTLCGVYKLTRRDVFL 450
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +++PGA+Y +R +G+RIDLR K D++LQ G+KVERHI DGD+++FNRQP+L
Sbjct: 315 VANGPTEWPGARYAIRGSGDRIDLRHAKKSGDINLQYGWKVERHIVDGDIILFNRQPSL 373
>gi|440301955|gb|ELP94337.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
invadens IP1]
Length = 1650
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 116/173 (67%), Gaps = 5/173 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P R N+ ++ LV G + YPGA + R NGE F D L G
Sbjct: 364 KILTFPEVVTRYNMDKLQSLVNAGMNSYPGAFMLQRKNGET----FRLNGGDKILNIGDV 419
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
V R + DGD VIFNRQP+LH+MSMMGHR RVLP+STFRMNL T+PYNADFDGDEMNLH+
Sbjct: 420 VHRFLMDGDYVIFNRQPSLHRMSMMGHRARVLPFSTFRMNLCDTTPYNADFDGDEMNLHI 479
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
PQ++E RAE+ + +TP QIITP+ N P+MGIVQDT +TKR F++K+
Sbjct: 480 PQTLEARAEISVLMMTPTQIITPEKNCPIMGIVQDTQCGSYIITKRQTFIEKL 532
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 90/113 (79%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D V R + DGD VIFNRQP+LH+MSMMGHR RVLP+STFRMNL T+PYNADFDGDEMNL
Sbjct: 418 DVVHRFLMDGDYVIFNRQPSLHRMSMMGHRARVLPFSTFRMNLCDTTPYNADFDGDEMNL 477
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQ++E RAE+ + +TP QIITP+ N P+MGIVQDT +TKR F++
Sbjct: 478 HIPQTLEARAEISVLMMTPTQIITPEKNCPIMGIVQDTQCGSYIITKRQTFIE 530
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G + YPGA + R NGE F D L G V R + DGD VIFNRQP+L
Sbjct: 383 LVNAGMNSYPGAFMLQRKNGET----FRLNGGDKILNIGDVVHRFLMDGDYVIFNRQPSL 438
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
H+MSMMGHR RVLP+STFRMNL
Sbjct: 439 HRMSMMGHRARVLPFSTFRMNL 460
>gi|226876150|gb|ACO89396.1| RNA polymerase II largest subunit, partial [Capronia fungicola]
Length = 984
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 119/172 (69%), Gaps = 5/172 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 287 RTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWK 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 347 VERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 402
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 403 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 454
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 401
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 402 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 452
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 306 LVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX----XXXX 361
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 362 XXXXXXXXRVRVMPYSTFRLNLSV 385
>gi|226876235|gb|ACO89438.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN515]
Length = 983
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 114/157 (72%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + +++LQ G++VERHI+DGD
Sbjct: 301 KLKRLVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMNLQYGWRVERHIQDGD----XX 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 357 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 417 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLSR 453
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 345 RVERHIQDGD----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 401 VPQSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFL 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + +++LQ G++VERHI+DGD
Sbjct: 305 LVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMNLQYGWRVERHIQDGD----XXXXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|119514098|gb|ABL75822.1| RNA polymerase II largest subunit [Aspicilia caesiocinerea]
Length = 989
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 109/155 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI
Sbjct: 303 KLHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVXXXXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAEV + +
Sbjct: 363 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCM 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 423 VPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFL 457
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 75/111 (67%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI RVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHIVXXXXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAEV + + P I++PQ N P+MGIVQDTL V KM +RDVFL
Sbjct: 407 VPQSEETRAEVSQLCMVPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFL 457
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV+ G + +PGAKY++RD+GERIDLR H + ++ LQ G+KVERHI
Sbjct: 304 LHQLVKNGPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVXXXXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 364 XXXXXXXXXXXRVRVMPYSTFRLNLSV 390
>gi|1143740|gb|AAB50025.1| RNA polymerase II [Trichomonas vaginalis]
Length = 1661
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N + E +V +G+ GA +++ D+G R DL S + L GY
Sbjct: 385 KILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYI 444
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+N T+PYNADFDGDEMNLHV
Sbjct: 445 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHV 504
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL +
Sbjct: 505 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTR 556
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 86/110 (78%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+RD D+VIFNRQP+LHKMSMMGHR ++ TFR+N T+PYNADFDGDEMNLHV
Sbjct: 445 VERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHV 504
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS R EV +I P+QII+PQ N+PV+G+VQD L R ++KRD FL
Sbjct: 505 PQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFL 554
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
+V +G+ GA +++ D+G R DL S + L GY VERH+RD D+VIFNRQP+L
Sbjct: 404 IVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSL 463
Query: 64 HKMSMMGHRVRVLPWSTFRMN 84
HKMSMMGHR ++ TFR+N
Sbjct: 464 HKMSMMGHRALIMSGRTFRLN 484
>gi|226876172|gb|ACO89407.1| RNA polymerase II largest subunit, partial [Cladophialophora
minourae]
Length = 983
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 117/167 (70%), Gaps = 8/167 (4%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
RV P++ R+ LVR G + +PGA+Y++RD GERIDLR H + ++ LQ G+ VER
Sbjct: 293 RVTPFTIDRLR----RLVRNGPNDHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWIVER 348
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
HI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS
Sbjct: 349 HIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQS 404
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RDVFL
Sbjct: 405 EESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDVFL 451
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 4/110 (3%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 401
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RDVFL
Sbjct: 402 PQSEESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDVFL 451
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LVR G + +PGA+Y++RD GERIDLR H + ++ LQ G+ VERHI+DGD+
Sbjct: 305 LVRNGPNDHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWIVERHIQDGDVX----XXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 1731
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 378 RLTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 436 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 496 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 532
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 419 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 478
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 479 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 531
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 379 LTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 437 PTLHRMSMMGHRVRVLNYNTFRLNL 461
>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 378 RLTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 436 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 496 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 532
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 419 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 478
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 479 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 531
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 379 LTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 437 PTLHRMSMMGHRVRVLNYNTFRLNL 461
>gi|327242107|gb|AEA40832.1| RNA polymerase II largest subunit [Hypotrichomonas acosta]
Length = 1042
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R+ P NL M LV GN GA Y++ G RI+L + + + L
Sbjct: 324 RILTFPEVVTARNLTEMQRLVYNGNEAQEGANYVITPQGTRINLAVTQESTAMQLDHDSI 383
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGHR R++P TFR+NL T+PYNADFDGDEMN+HV
Sbjct: 384 VERHLRDDDIVIFNRQPSLHKMSMMGHRARIMPGQTFRLNLCVTTPYNADFDGDEMNMHV 443
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS RAE ++I + P QII+PQ+ P++G+VQD+L R ++ RD FL + E
Sbjct: 444 PQSQMARAEAKHIMLVPNQIISPQSACPIIGLVQDSLLGCRLLSLRDTFLTRNE 497
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 106/146 (72%), Gaps = 12/146 (8%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLHKMSM 266
+ITPQ R + + Q++ TA++ LD VERH+RD D+VIFNRQP+LHKMSM
Sbjct: 357 VITPQGTRINLAVTQES-TAMQ--------LDHDSIVERHLRDDDIVIFNRQPSLHKMSM 407
Query: 267 MGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 326
MGHR R++P TFR+NL T+PYNADFDGDEMN+HVPQS RAE ++I + P QII+PQ
Sbjct: 408 MGHRARIMPGQTFRLNLCVTTPYNADFDGDEMNMHVPQSQMARAEAKHIMLVPNQIISPQ 467
Query: 327 NNRPVMGIVQDTLTAVRKMTKRDVFL 352
+ P++G+VQD+L R ++ RD FL
Sbjct: 468 SACPIIGLVQDSLLGCRLLSLRDTFL 493
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LV GN GA Y++ G RI+L + + + L VERH+RD D+VIFNRQ
Sbjct: 340 MQRLVYNGNEAQEGANYVITPQGTRINLAVTQESTAMQLDHDSIVERHLRDDDIVIFNRQ 399
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMMGHR R++P TFR+NL
Sbjct: 400 PSLHKMSMMGHRARIMPGQTFRLNL 424
>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1733
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 378 RLTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 436 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 496 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 532
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 419 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 478
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 479 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 531
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 379 LTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 437 PTLHRMSMMGHRVRVLNYNTFRLNL 461
>gi|133332|sp|P17546.1|RPB1A_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-A;
Short=RNA polymerase II subunit B1-A; AltName:
Full=DNA-directed RNA polymerase II largest subunit A
gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 395 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL +STFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 453 QPTLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 513 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL +STFR+NLSCT+PYNADFDGDEMNL
Sbjct: 436 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNL 495
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 496 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 548
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 396 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL +STFR+NL
Sbjct: 454 PTLHRMSMMGHRVRVLNYSTFRLNL 478
>gi|327242125|gb|AEA40841.1| RNA polymerase II largest subunit [Tritrichomonas foetus]
Length = 1293
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 113/159 (71%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+ +LV G + GA YI+ +IDL + + +HL VERH+ DGD+VIFNR
Sbjct: 324 ELTKLVINGPEELKGANYIITPQQMKIDLSHATERTAIHLDDLAIVERHLTDGDIVIFNR 383
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGH +LP STFR+NL T+PYNADFDGDEMNLHVPQ+ RAEV++I +
Sbjct: 384 QPSLHKMSMMGHHALILPGSTFRLNLCVTTPYNADFDGDEMNLHVPQTQSARAEVKHIML 443
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P QIITPQ N+P++G+VQD+L A R ++ + FL++ E
Sbjct: 444 VPNQIITPQGNKPIIGLVQDSLLACRLLSLKSSFLNRNE 482
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 92/114 (80%)
Query: 240 LDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 299
L VERH+ DGD+VIFNRQP+LHKMSMMGH +LP STFR+NL T+PYNADFDGDEMN
Sbjct: 366 LAIVERHLTDGDIVIFNRQPSLHKMSMMGHHALILPGSTFRLNLCVTTPYNADFDGDEMN 425
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
LHVPQ+ RAEV++I + P QIITPQ N+P++G+VQD+L A R ++ + FL+
Sbjct: 426 LHVPQTQSARAEVKHIMLVPNQIITPQGNKPIIGLVQDSLLACRLLSLKSSFLN 479
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G + GA YI+ +IDL + + +HL VERH+ DGD+VIFNRQ
Sbjct: 325 LTKLVINGPEELKGANYIITPQQMKIDLSHATERTAIHLDDLAIVERHLTDGDIVIFNRQ 384
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMMGH +LP STFR+NL
Sbjct: 385 PSLHKMSMMGHHALILPGSTFRLNL 409
>gi|407852687|gb|EKG06051.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
cruzi]
Length = 1588
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 233 RLTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNR 290
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 291 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 350
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 351 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 387
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 274 DVVERHLINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 333
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 334 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 386
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 234 LTEFVRR--PVYPSANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNRQ 291
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 292 PTLHRMSMMGHRVRVLNYNTFRLNL 316
>gi|340502584|gb|EGR29261.1| RNA polymerase domain 2 family protein [Ichthyophthirius
multifiliis]
Length = 1496
Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats.
Identities = 77/119 (64%), Positives = 99/119 (83%)
Query: 124 HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG 183
H+ G +ER ++DGD V+FNRQPTLHKMSMMGH+V++LPWSTFR+NLS +PYNADFDG
Sbjct: 431 HINDGVIIERTLQDGDFVLFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVCTPYNADFDG 490
Query: 184 DEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
DEMNLHVPQS ETRAE++++ PRQIITP++N+PVMG+VQD+L + T RD F+ +
Sbjct: 491 DEMNLHVPQSYETRAEIKHVCHVPRQIITPKSNKPVMGLVQDSLLGISLFTLRDCFVKR 549
Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/110 (68%), Positives = 95/110 (86%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ER ++DGD V+FNRQPTLHKMSMMGH+V++LPWSTFR+NLS +PYNADFDGDEMNLHV
Sbjct: 438 IERTLQDGDFVLFNRQPTLHKMSMMGHKVKILPWSTFRLNLSVCTPYNADFDGDEMNLHV 497
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS ETRAE++++ PRQIITP++N+PVMG+VQD+L + T RD F+
Sbjct: 498 PQSYETRAEIKHVCHVPRQIITPKSNKPVMGLVQDSLLGISLFTLRDCFV 547
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 38 HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
H+ G +ER ++DGD V+FNRQPTLHKMSMMGH+V++LPWSTFR+NL
Sbjct: 431 HINDGVIIERTLQDGDFVLFNRQPTLHKMSMMGHKVKILPWSTFRLNL 478
>gi|226876229|gb|ACO89435.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN497]
Length = 990
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 118/170 (69%), Gaps = 5/170 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 286 RTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWK 345
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 401
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 402 PQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 451
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 345 KVERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 401 VPQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 451
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DGD+
Sbjct: 305 LVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDGDVX----XXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|226876237|gb|ACO89439.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN531]
Length = 983
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ + V G +++PGA+Y++RD+GERIDLR H + S++ LQ G+ VERHI+DGD+
Sbjct: 301 KLKKCVMNGPTEHPGARYVIRDSGERIDLRHHKRASEMTLQNGWIVERHIQDGDVX---- 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE++N+ +
Sbjct: 357 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELQNLCM 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGI+QDTL V K+ +RDV L K
Sbjct: 417 VPLNIVSPQRNSPLMGIIQDTLCGVYKICRRDVLLTK 453
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 4/110 (3%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DGD+ RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHV 401
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E+RAE++N+ + P I++PQ N P+MGI+QDTL V K+ +RDV L
Sbjct: 402 PQSQESRAELQNLCMVPLNIVSPQRNSPLMGIIQDTLCGVYKICRRDVLL 451
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+ V G +++PGA+Y++RD+GERIDLR H + S++ LQ G+ VERHI+DGD+
Sbjct: 304 KCVMNGPTEHPGARYVIRDSGERIDLRHHKRASEMTLQNGWIVERHIQDGDV----XXXX 359
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 360 XXXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 378 RLTEFVRR--PVYPSAFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNR 435
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 436 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 495
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 496 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 532
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 419 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 478
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 479 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 531
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 379 LTEFVRR--PVYPSAFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQ 436
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 437 PTLHRMSMMGHRVRVLNYNTFRLNL 461
>gi|226876233|gb|ACO89437.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN508]
Length = 983
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + ++ +Q G++VERHI+DGD
Sbjct: 301 KLKRLVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMKVQYGWRVERHIQDGD----XX 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 357 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RD+FL +
Sbjct: 417 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDIFLSR 453
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 345 RVERHIQDGD----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 401 VPQSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDIFL 451
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ +Q G++VERHI+DGD
Sbjct: 305 LVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMKVQYGWRVERHIQDGD----XXXXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
IL3000]
Length = 1756
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 395 RLTEFVRR--EVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 453 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 513 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 436 DIVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 495
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 496 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 548
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 396 LTEFVRR--EVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 454 PTLHRMSMMGHRVRVLNYNTFRLNL 478
>gi|340055761|emb|CCC50082.1| RNA polymerase IIA largest subunit, fragment, partial [Trypanosoma
vivax Y486]
Length = 1068
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VRR + YP A Y+ NG L + + L G VERH+ +GD+V+FNR
Sbjct: 391 RLTEFVRR--TVYPSANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGDVVLFNR 448
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 449 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 508
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 509 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 545
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 432 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 491
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 492 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 544
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VRR + YP A Y+ NG L + + L G VERH+ +GD+V+FNRQ
Sbjct: 392 LTEFVRR--TVYPSANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGDVVLFNRQ 449
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 450 PTLHRMSMMGHRVRVLNYNTFRLNL 474
>gi|133329|sp|P17545.1|RPB1B_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-B;
Short=RNA polymerase II subunit B1-B; AltName:
Full=DNA-directed RNA polymerase II largest subunit B
gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 395 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 453 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 513 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 436 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 495
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 496 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 548
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 396 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 454 PTLHRMSMMGHRVRVLNYNTFRLNL 478
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
Length = 1765
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 394 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 452 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 512 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 548
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 435 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 495 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 547
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 395 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 453 PTLHRMSMMGHRVRVLNYNTFRLNL 477
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1765
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 394 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 452 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 512 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 548
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 435 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 495 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 547
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 395 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 453 PTLHRMSMMGHRVRVLNYNTFRLNL 477
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats.
Identities = 84/173 (48%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKV 131
RV PW+ +M LVR G+ +YPGA+YI+R +G+R+ L+F +L L+ GY V
Sbjct: 352 RVTPWNLEKMR----TLVRNGSDKYPGARYIIRPDGKRVRLKFVANLEELATALEPGYVV 407
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH++DGD+V+FNRQP+LH+MS+M H VRVLP+ T R+N + +PYNADFDGDEMNLHVP
Sbjct: 408 ERHLQDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTLRLNPAVCTPYNADFDGDEMNLHVP 467
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QS E + E + V II+P+ P++G+++D LT++ +T+ + L K E
Sbjct: 468 QSEEAQTEARELLVVENNIISPRYGAPIIGVIRDFLTSLYLLTRDETKLTKSE 520
Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats.
Identities = 58/110 (52%), Positives = 83/110 (75%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD+V+FNRQP+LH+MS+M H VRVLP+ T R+N + +PYNADFDGDEMNLHV
Sbjct: 407 VERHLQDGDIVLFNRQPSLHRMSIMAHYVRVLPYKTLRLNPAVCTPYNADFDGDEMNLHV 466
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E + E + V II+P+ P++G+++D LT++ +T+ + L
Sbjct: 467 PQSEEAQTEARELLVVENNIISPRYGAPIIGVIRDFLTSLYLLTRDETKL 516
Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFN 58
M LVR G+ +YPGA+YI+R +G+R+ L+F +L L+ GY VERH++DGD+V+FN
Sbjct: 361 MRTLVRNGSDKYPGARYIIRPDGKRVRLKFVANLEELATALEPGYVVERHLQDGDIVLFN 420
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LH+MS+M H VRVLP+ T R+N
Sbjct: 421 RQPSLHRMSIMAHYVRVLPYKTLRLN 446
>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 394 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 452 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 512 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 548
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 435 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 495 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 547
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 395 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 453 PTLHRMSMMGHRVRVLNYNTFRLNL 477
>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 394 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 452 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 512 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 548
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 435 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 495 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 547
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 395 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 453 PTLHRMSMMGHRVRVLNYNTFRLNL 477
>gi|161899215|ref|XP_001712834.1| largest subunit of RNA polymerase subunit II [Bigelowiella natans]
gi|75756327|gb|ABA27222.1| largest subunit of RNA polymerase subunit II [Bigelowiella natans]
Length = 1510
Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats.
Identities = 85/188 (45%), Positives = 121/188 (64%)
Query: 76 LPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
LP + N+ + A YI++ + IDLR+ S + L+ G+ +ERHI
Sbjct: 361 LPEVVNKFNIDRLSYIIDSTGNELKANYIIKGYNKVIDLRYKSSNSIILLKYGFIIERHI 420
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
+ GD+VI NRQP+LHKMSMMGHRV++ P TFR+NLS T+PYNADFDGDEMN+H+PQS
Sbjct: 421 QSGDIVILNRQPSLHKMSMMGHRVKIFPKLTFRLNLSVTTPYNADFDGDEMNIHIPQSEL 480
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIF 255
TR+E I I++PQ N+PV+G+VQDTL+ ++ RD FL+ +E+ + F
Sbjct: 481 TRSESTFIMNVINNIMSPQANKPVIGLVQDTLSTCYTLSSRDSFLNSLEKDYLKNNYKNF 540
Query: 256 NRQPTLHK 263
+ QP++ K
Sbjct: 541 STQPSIIK 548
Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats.
Identities = 67/111 (60%), Positives = 87/111 (78%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ERHI+ GD+VI NRQP+LHKMSMMGHRV++ P TFR+NLS T+PYNADFDGDEMN+H+
Sbjct: 416 IERHIQSGDIVILNRQPSLHKMSMMGHRVKIFPKLTFRLNLSVTTPYNADFDGDEMNIHI 475
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS TR+E I I++PQ N+PV+G+VQDTL+ ++ RD FL+
Sbjct: 476 PQSELTRSESTFIMNVINNIMSPQANKPVIGLVQDTLSTCYTLSSRDSFLN 526
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 15 AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVR 74
A YI++ + IDLR+ S + L+ G+ +ERHI+ GD+VI NRQP+LHKMSMMGHRV+
Sbjct: 386 ANYIIKGYNKVIDLRYKSSNSIILLKYGFIIERHIQSGDIVILNRQPSLHKMSMMGHRVK 445
Query: 75 VLPWSTFRMNL 85
+ P TFR+NL
Sbjct: 446 IFPKLTFRLNL 456
>gi|77176713|gb|ABA64471.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 411
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 97/110 (88%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM++L+R G ++YPGA+YI+R +G R DLR+ K SDLHL+ GY+VERHI+DGD V+FNR
Sbjct: 302 RMYQLIRAGPTEYPGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNR 361
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
QP+LHKMS+M HR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E
Sbjct: 362 QPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSFE 411
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 74/85 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M++L+R G ++YPGA+YI+R +G R DLR+ K SDLHL+ GY+VERHI+DGD V+FNRQ
Sbjct: 303 MYQLIRAGPTEYPGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNRQ 362
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+M HR++V+P+STFR+NL
Sbjct: 363 PSLHKMSIMAHRIKVMPYSTFRLNL 387
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 62/66 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DGD V+FNRQP+LHKMS+M HR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 346 RVERHIQDGDYVLFNRQPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 405
Query: 302 VPQSME 307
VPQS E
Sbjct: 406 VPQSFE 411
>gi|261330838|emb|CBH13823.1| RNA polymerase IIA largest subunit, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 948
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 394 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 452 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 512 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 548
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 435 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 494
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 495 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 547
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 395 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 453 PTLHRMSMMGHRVRVLNYNTFRLNL 477
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 106/137 (77%), Gaps = 1/137 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 144
R+ +LV G +PGA++++R +GERIDLR H + LQ G+KVERH+ DGD ++FN
Sbjct: 403 RLGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFN 462
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ +
Sbjct: 463 RQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLC 522
Query: 205 VTPRQIITPQNNRPVMG 221
+ P I++PQ N P+MG
Sbjct: 523 LVPLNIVSPQRNGPLMG 539
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 77/92 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD ++FNRQP+LHK SMM HRVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 448 KVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 507
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMG 333
VPQS E RAE+ + + P I++PQ N P+MG
Sbjct: 508 VPQSEEARAELNQLCLVPLNIVSPQRNGPLMG 539
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+ +LV G +PGA++++R +GERIDLR H + LQ G+KVERH+ DGD ++FNR
Sbjct: 404 LGQLVDNGPDVHPGARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNR 463
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHK SMM HRVRV+P+STFR+NL +
Sbjct: 464 QPSLHKESMMSHRVRVMPYSTFRLNLSV 491
>gi|226876175|gb|ACO89408.1| RNA polymerase II largest subunit, partial [Knufia sp. CBS 268.34]
Length = 970
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 115/172 (66%), Gaps = 5/172 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ R+ V G +++PGA+Y++R +G+RIDLR K D++LQ G+K
Sbjct: 268 RTLTFPETVTNFNIERLKRCVANGPTEWPGARYVIRGSGDRIDLRHAKKSGDINLQYGWK 327
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI D RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 328 VERHIVD----XXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 383
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E RAE++ + + PR I++PQ N P+MGIVQDTL + K+T+RD+FL K
Sbjct: 384 PQSQEARAELQQLCMVPRNIVSPQKNAPLMGIVQDTLCGIYKLTRRDIFLSK 435
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 327 KVERHIVD----XXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 382
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE++ + + PR I++PQ N P+MGIVQDTL + K+T+RD+FL
Sbjct: 383 VPQSQEARAELQQLCMVPRNIVSPQKNAPLMGIVQDTLCGIYKLTRRDIFL 433
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 64
V G +++PGA+Y++R +G+RIDLR K D++LQ G+KVERHI D
Sbjct: 288 VANGPTEWPGARYVIRGSGDRIDLRHAKKSGDINLQYGWKVERHIVD----XXXXXXXXX 343
Query: 65 KMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 344 XXXXXXXRVRVMPYSTFRLNLSV 366
>gi|194245532|gb|ACF35375.1| RNA polymerase II large subunit [Chauliognathus opacus]
Length = 629
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/86 (93%), Positives = 85/86 (98%)
Query: 157 HRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNN 216
HRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+TPRQIITPQ N
Sbjct: 1 HRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQAN 60
Query: 217 RPVMGIVQDTLTAVRKMTKRDVFLDK 242
+PVMGIVQDTLTAVRKMTKRDVF+DK
Sbjct: 61 KPVMGIVQDTLTAVRKMTKRDVFIDK 86
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 84/85 (98%)
Query: 269 HRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNN 328
HRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN+H+TPRQIITPQ N
Sbjct: 1 HRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQAN 60
Query: 329 RPVMGIVQDTLTAVRKMTKRDVFLD 353
+PVMGIVQDTLTAVRKMTKRDVF+D
Sbjct: 61 KPVMGIVQDTLTAVRKMTKRDVFID 85
>gi|341858990|gb|AEK97405.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858982|gb|AEK97401.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858984|gb|AEK97402.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858986|gb|AEK97403.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858988|gb|AEK97404.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858992|gb|AEK97406.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858994|gb|AEK97407.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341859000|gb|AEK97410.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859002|gb|AEK97411.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859006|gb|AEK97413.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858952|gb|AEK97386.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 952
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 303 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 363 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 423 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 459
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 407 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 458
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 304 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 364 XXXXXXXXXXHRVKVMPYSTFRLNLSV 390
>gi|341859008|gb|AEK97414.1| ribosomal polymerase II largest subunit [Beauveria vermiconia]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858968|gb|AEK97394.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341859010|gb|AEK97415.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
gi|341859012|gb|AEK97416.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858946|gb|AEK97383.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858948|gb|AEK97384.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858950|gb|AEK97385.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858954|gb|AEK97387.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858956|gb|AEK97388.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858960|gb|AEK97390.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858962|gb|AEK97391.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858880|gb|AEK97350.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858882|gb|AEK97351.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858886|gb|AEK97353.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858888|gb|AEK97354.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858890|gb|AEK97355.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858892|gb|AEK97356.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858894|gb|AEK97357.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858896|gb|AEK97358.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858898|gb|AEK97359.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858900|gb|AEK97360.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858902|gb|AEK97361.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858904|gb|AEK97362.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858906|gb|AEK97363.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858908|gb|AEK97364.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858910|gb|AEK97365.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858912|gb|AEK97366.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858914|gb|AEK97367.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858916|gb|AEK97368.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858918|gb|AEK97369.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858920|gb|AEK97370.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858922|gb|AEK97371.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858924|gb|AEK97372.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858926|gb|AEK97373.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858930|gb|AEK97375.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858932|gb|AEK97376.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858942|gb|AEK97381.1| ribosomal polymerase II largest subunit [Beauveria australis]
gi|341858944|gb|AEK97382.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858972|gb|AEK97396.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858976|gb|AEK97398.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858978|gb|AEK97399.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858980|gb|AEK97400.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341859014|gb|AEK97417.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858934|gb|AEK97377.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
gi|341858936|gb|AEK97378.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 953
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 304 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 364 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 424 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 460
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 348 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 407
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 408 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 459
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 365 XXXXXXXXXXHRVKVMPYSTFRLNLSV 391
>gi|341858964|gb|AEK97392.1| ribosomal polymerase II largest subunit [Beauveria varroae]
gi|341858966|gb|AEK97393.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|226876213|gb|ACO89427.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN210]
Length = 957
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 4/157 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD GERIDLR H + +++LQ G++VERHI+DG
Sbjct: 301 KLKRLVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMNLQYGWRVERHIQDG----XXX 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+ TFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 357 XXXXXXXXXXXXRVRVMPYPTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCM 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 417 VPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLSR 453
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHI+DG RVRV+P+ TFR+NLS T+PYNADFDGDEMNLH
Sbjct: 345 RVERHIQDG----XXXXXXXXXXXXXXXRVRVMPYPTFRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 401 VPQSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFL 451
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + +++LQ G++VERHI+DG
Sbjct: 305 LVANGPTEHPGARYVIRDTGERIDLRHHKRAGEMNLQYGWRVERHIQDG----XXXXXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+ TFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYPTFRLNLSV 384
>gi|399569176|gb|AFP47206.1| ribosomal polymerase II largest subunit, partial [Beauveria lii]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341859004|gb|AEK97412.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858884|gb|AEK97352.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858938|gb|AEK97379.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 954
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|341858958|gb|AEK97389.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNLSV 392
>gi|226876231|gb|ACO89436.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN506]
Length = 990
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 116/170 (68%), Gaps = 5/170 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 286 RTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWK 345
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DG RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 401
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 402 PQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 79/111 (71%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DG RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 345 KVERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 401 VPQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 451
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DG
Sbjct: 305 LVANGPNEHPGARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQDG----XXXXXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNL 85
RVRV+P+STFR+NL
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNL 382
>gi|226876156|gb|ACO89399.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC
15.551]
Length = 984
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 5/170 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + NL ++ LV+ G + +PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 287 RTLTYPENVTAFNLDKLKHLVKNGPNVHPGARYVIRDTGERIDLRHHKRAGEITLQYGWK 346
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DG RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 347 VERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 402
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
PQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 403 PQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 452
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DG RVRV+P+STFR+NLS T+PYNADFDGDEMNLH
Sbjct: 346 KVERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 401
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 402 VPQNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 452
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV+ G + +PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DG
Sbjct: 306 LVKNGPNVHPGARYVIRDTGERIDLRHHKRAGEITLQYGWKVERHIQDG----XXXXXXX 361
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 362 XXXXXXXXRVRVMPYSTFRLNLSV 385
>gi|226876170|gb|ACO89406.1| RNA polymerase II largest subunit, partial [Cladophialophora
carrionii]
Length = 983
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 112/155 (72%), Gaps = 4/155 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DG
Sbjct: 301 KLKRLVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDG----XXX 356
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 357 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCM 416
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 417 VPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 451
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 4/110 (3%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DG RVRV+P+STFR+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHV 401
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 402 PQSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 451
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DG
Sbjct: 305 LVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDG----XXXXXXX 360
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 361 XXXXXXXXRVRVMPYSTFRLNLSV 384
>gi|329132883|gb|AEB78332.1| RNA polymerase II largest subunit [Parabodo caudatus]
Length = 1035
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 118/159 (74%), Gaps = 4/159 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGE--RIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIF 143
R+ ++VR +SQYP A IV ++G R++ + L L+ G VER + +GD+V+F
Sbjct: 285 RLTQIVR--SSQYPSANAIVSNSGTVWRLNGMKPERRQQLTLEIGDIVERQVLNGDVVLF 342
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ +
Sbjct: 343 NRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEM 402
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ P+ ++P + P MGIVQD+L ++T ++VFLDK
Sbjct: 403 MMVPKNFVSPNKSAPCMGIVQDSLLGSWRITDKEVFLDK 441
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VER + +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 328 DIVERQVLNGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 387
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T ++VFLD
Sbjct: 388 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSWRITDKEVFLD 440
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Query: 9 NSQYPGAKYIVRDNGE--RIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKM 66
+SQYP A IV ++G R++ + L L+ G VER + +GD+V+FNRQPTLH+M
Sbjct: 292 SSQYPSANAIVSNSGTVWRLNGMKPERRQQLTLEIGDIVERQVLNGDVVLFNRQPTLHRM 351
Query: 67 SMMGHRVRVLPWSTFRMNL 85
SMMGHRVRVL ++TFR+NL
Sbjct: 352 SMMGHRVRVLNYNTFRLNL 370
>gi|341859016|gb|AEK97418.1| ribosomal polymerase II largest subunit [Cordyceps cicadae]
Length = 954
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFIDK 461
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 76/112 (67%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFID 460
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
HRV+V+P+STFR+NL
Sbjct: 366 XXXXXXXXXXHRVKVMPYSTFRLNL 390
>gi|341859022|gb|AEK97421.1| ribosomal polymerase II largest subunit [Cordyceps militaris]
Length = 952
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 303 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 362
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 363 XXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 422
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L K+ +RD F+DK
Sbjct: 423 VPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDK 459
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 76/112 (67%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 347 KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 406
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L K+ +RD F+D
Sbjct: 407 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFID 458
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 304 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 363
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
HRV+V+P+STFR+NL +
Sbjct: 364 XXXXXXXXXXHRVKVMPYSTFRLNLSV 390
>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 960
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 72 RVRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKV 131
+ P NL + + YPGA+Y++ + G RIDL K + L ++ G V
Sbjct: 266 KTLTFPERVTSYNLDRMQALVNNAKNYPGARYVINERGRRIDLEV-AKTTPL-IEIGDIV 323
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH+ GD V+FNRQP+LHKMSMM H VRV+P+S+FR+N++ +PYNADFDGDEMNLH+P
Sbjct: 324 ERHMVTGDTVLFNRQPSLHKMSMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDEMNLHMP 383
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
QS ET AE++ + + +++PQ+N+PV G+VQD L +RK+T RD F++
Sbjct: 384 QSYETVAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVN 433
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 91/113 (80%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ GD V+FNRQP+LHKMSMM H VRV+P+S+FR+N++ +PYNADFDGDEMNL
Sbjct: 321 DIVERHMVTGDTVLFNRQPSLHKMSMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDEMNL 380
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQS ET AE++ + + +++PQ+N+PV G+VQD L +RK+T RD F++
Sbjct: 381 HMPQSYETVAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVN 433
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 12 YPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 71
YPGA+Y++ + G RIDL K + L ++ G VERH+ GD V+FNRQP+LHKMSMM H
Sbjct: 292 YPGARYVINERGRRIDLEV-AKTTPL-IEIGDIVERHMVTGDTVLFNRQPSLHKMSMMAH 349
Query: 72 RVRVLPWSTFRMNLRM 87
VRV+P+S+FR+N+ +
Sbjct: 350 IVRVMPYSSFRLNVNV 365
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVE 132
RV PW+ M +LV G ++PGA YIVR +G +I L+F K + L+ G+ VE
Sbjct: 357 RVTPWNIEEMR----KLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLESGFIVE 412
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHVPQ
Sbjct: 413 RHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQ 472
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S E RAE + + R I+TP+ P++G +QD ++ +T + LDK
Sbjct: 473 SEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDK 522
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHV
Sbjct: 411 VERHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHV 470
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE + + R I+TP+ P++G +QD ++ +T + LD
Sbjct: 471 PQSEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLD 521
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M +LV G ++PGA YIVR +G +I L+F K + L+ G+ VERH+ DGD+V+FNR
Sbjct: 366 MRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLESGFIVERHLMDGDIVLFNR 425
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LH++S+M H VRVLP+ TFR+NL
Sbjct: 426 QPSLHRISVMAHVVRVLPYKTFRLNL 451
>gi|327242123|gb|AEA40840.1| RNA polymerase II largest subunit [Trichomitus batrachorum]
Length = 1057
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 72 RVRVLPWSTFRMNLR-MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P +N++ M +LV G GAK ++ G R L + + HL G
Sbjct: 319 KILTFPEVVNSLNIKDMQQLVYNGPDSQDGAKAVITPLGARFSLGDTQESTVQHLDYGSV 378
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+RD D+VIFNRQP+LHKMSMMGH +++ +FR+NL T+PYNADFDGDEMNLHV
Sbjct: 379 VERHLRDNDIVIFNRQPSLHKMSMMGHYAKLIRGQSFRLNLCVTTPYNADFDGDEMNLHV 438
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
Q+ + RAEV++I P QIITPQ+N+P++G+VQD L R ++ RD FL + E
Sbjct: 439 VQTQQARAEVKHIMAVPYQIITPQSNKPIIGLVQDCLVGCRLLSIRDTFLTRNE 492
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 6/145 (4%)
Query: 208 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMM 267
+ +ITP R +G Q++ V+ + V VERH+RD D+VIFNRQP+LHKMSMM
Sbjct: 350 KAVITPLGARFSLGDTQES--TVQHLDYGSV----VERHLRDNDIVIFNRQPSLHKMSMM 403
Query: 268 GHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQN 327
GH +++ +FR+NL T+PYNADFDGDEMNLHV Q+ + RAEV++I P QIITPQ+
Sbjct: 404 GHYAKLIRGQSFRLNLCVTTPYNADFDGDEMNLHVVQTQQARAEVKHIMAVPYQIITPQS 463
Query: 328 NRPVMGIVQDTLTAVRKMTKRDVFL 352
N+P++G+VQD L R ++ RD FL
Sbjct: 464 NKPIIGLVQDCLVGCRLLSIRDTFL 488
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G GAK ++ G R L + + HL G VERH+RD D+VIFNRQ
Sbjct: 335 MQQLVYNGPDSQDGAKAVITPLGARFSLGDTQESTVQHLDYGSVVERHLRDNDIVIFNRQ 394
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMMGH +++ +FR+NL
Sbjct: 395 PSLHKMSMMGHYAKLIRGQSFRLNL 419
>gi|157741624|gb|ABV69517.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 987
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 112/174 (64%), Gaps = 8/174 (4%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + R N+ R+ V G +PGA+Y++R+ GERIDLR+H S + L+ G+K
Sbjct: 298 RTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWK 357
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH+ DGD+++FNRQP R+ LS T+PYNADFDGDEMNLHV
Sbjct: 358 VERHLMDGDIILFNRQPXXXXXXXXXX-------XXXRLXLSVTTPYNADFDGDEMNLHV 410
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL + E
Sbjct: 411 PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREE 464
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP R+ LS T+PYNADFDGDEMNLH
Sbjct: 357 KVERHLMDGDIILFNRQPXXXXXXXXXX-------XXXRLXLSVTTPYNADFDGDEMNLH 409
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ + + P I++PQ N P+MGIVQDTL + K+ +RD+FL
Sbjct: 410 VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFL 460
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQP 61
V G +PGA+Y++R+ GERIDLR+H S + L+ G+KVERH+ DGD+++FNRQP
Sbjct: 317 FVTNGPEAHPGARYVIRETGERIDLRYHKDTSQIALKTGWKVERHLMDGDIILFNRQP 374
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVE 132
RV PW+ M +LV G ++PGA YIVR +G +I L+F K + L+ G+ VE
Sbjct: 357 RVTPWNIEEMR----KLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLEPGFIVE 412
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHVPQ
Sbjct: 413 RHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQ 472
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S E RAE + + R I+TP+ P++G +QD ++ +T + LDK
Sbjct: 473 SEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLDK 522
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 81/111 (72%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHV
Sbjct: 411 VERHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHV 470
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE + + R I+TP+ P++G +QD ++ +T + LD
Sbjct: 471 PQSEEARAEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLD 521
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M +LV G ++PGA YIVR +G +I L+F K + L+ G+ VERH+ DGD+V+FNR
Sbjct: 366 MRKLVLNGPEKWPGANYIVRPDGRKISLKFVDRKAAAESLEPGFIVERHLMDGDIVLFNR 425
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LH++S+M H VRVLP+ TFR+NL
Sbjct: 426 QPSLHRISVMAHVVRVLPYKTFRLNL 451
>gi|78100246|gb|ABB20924.1| RNA polymerase II largest subunit, partial [Tilletiaria anomala]
Length = 569
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 108/154 (70%), Gaps = 2/154 (1%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LVR G +++PGA+Y+VRD GERIDL++ + SD+ LQ G+ VERH++DGD V+FNRQP+
Sbjct: 162 QLVRNGPTEWPGARYVVRDTGERIDLKYGRR-SDMTLQFGWIVERHLKDGDFVLFNRQPS 220
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG-DEMNLHVPQSMETRAEVENIHVTP 207
LHKMSMM HRV+++ +STFR+NLS T PYNADFDG I
Sbjct: 221 LHKMSMMCHRVKLMDFSTFRLNLSVTPPYNADFDGXXXXXXXXXXXXXXXXXXXXIAWVA 280
Query: 208 RQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
+ I++PQ N+PVMGIVQDTL +RK T RD LD
Sbjct: 281 KNIVSPQGNKPVMGIVQDTLCGIRKFTLRDCLLD 314
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG-DEMNLH 301
VERH++DGD V+FNRQP+LHKMSMM HRV+++ +STFR+NLS T PYNADFDG
Sbjct: 203 VERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMDFSTFRLNLSVTPPYNADFDGXXXXXXX 262
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
I + I++PQ N+PVMGIVQDTL +RK T RD LD
Sbjct: 263 XXXXXXXXXXXXXIAWVAKNIVSPQGNKPVMGIVQDTLCGIRKFTLRDCLLD 314
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA+Y+VRD GERIDL++ + SD+ LQ G+ VERH++DGD V+FNRQP+
Sbjct: 162 QLVRNGPTEWPGARYVVRDTGERIDLKYGRR-SDMTLQFGWIVERHLKDGDFVLFNRQPS 220
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM HRV+++ +STFR+NL +
Sbjct: 221 LHKMSMMCHRVKLMDFSTFRLNLSV 245
>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 888
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 6/171 (3%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF--HPKPSDLHLQCGYKV 131
+V PW+ ++ +LV G +PGA YI++ +G RIDLR+ H + L+ GY V
Sbjct: 356 KVTPWNIEKLR----KLVINGPDVWPGANYIIKPDGSRIDLRYVKHREEISQTLKPGYIV 411
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH+ DGD+V+FNRQP+LH++S+M H V+VLP+ TFR+NL T PYNADFDGDEMNLHVP
Sbjct: 412 ERHLMDGDVVLFNRQPSLHRISIMAHIVKVLPYKTFRLNLLVTIPYNADFDGDEMNLHVP 471
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
QS E RAE + + I+TP+ P++G + D ++ +T++D LDK
Sbjct: 472 QSEEARAEARELMLVQEHIMTPRYGAPIIGGLHDYISGSYLLTRKDALLDK 522
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 82/111 (73%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V+FNRQP+LH++S+M H V+VLP+ TFR+NL T PYNADFDGDEMNLHV
Sbjct: 411 VERHLMDGDVVLFNRQPSLHRISIMAHIVKVLPYKTFRLNLLVTIPYNADFDGDEMNLHV 470
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE + + I+TP+ P++G + D ++ +T++D LD
Sbjct: 471 PQSEEARAEARELMLVQEHIMTPRYGAPIIGGLHDYISGSYLLTRKDALLD 521
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRF--HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LV G +PGA YI++ +G RIDLR+ H + L+ GY VERH+ DGD+V+FNRQ
Sbjct: 367 KLVINGPDVWPGANYIIKPDGSRIDLRYVKHREEISQTLKPGYIVERHLMDGDVVLFNRQ 426
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LH++S+M H V+VLP+ TFR+NL
Sbjct: 427 PSLHRISIMAHIVKVLPYKTFRLNL 451
>gi|118348890|ref|XP_001007918.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89289685|gb|EAR87673.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila SB210]
Length = 1759
Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/119 (63%), Positives = 96/119 (80%)
Query: 124 HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG 183
++ G +ER +++GD V+FNRQP+LHKMSMMGHRVR+LP+STFR+NLS T+PYNADFDG
Sbjct: 437 QIKIGVIIERALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDG 496
Query: 184 DEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
DEMN+HVPQS ETR E+ I PRQI+TP+ N+PVMG+VQD+L V T RD FL +
Sbjct: 497 DEMNMHVPQSYETRVELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFLTR 555
Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/110 (68%), Positives = 92/110 (83%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ER +++GD V+FNRQP+LHKMSMMGHRVR+LP+STFR+NLS T+PYNADFDGDEMN+HV
Sbjct: 444 IERALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHV 503
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS ETR E+ I PRQI+TP+ N+PVMG+VQD+L V T RD FL
Sbjct: 504 PQSYETRVELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFL 553
Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 42/48 (87%)
Query: 38 HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
++ G +ER +++GD V+FNRQP+LHKMSMMGHRVR+LP+STFR+NL
Sbjct: 437 QIKIGVIIERALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNL 484
>gi|149794942|gb|ABR31767.1| RNA polymerase II largest subunit [Phialophora verrucosa]
Length = 998
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 107/155 (69%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DGD+++FNR
Sbjct: 311 KLKRLVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDGDVILFNR 370
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
NLS T+PYNADFDGDEMNLHVPQS E+RAE+ N+ +
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCM 430
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 431 VPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 465
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 73/110 (66%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERHI+DGD+++FNR NLS T+PYNADFDGDEMNLHV
Sbjct: 356 VERHIQDGDVILFNRXXXXXXXXXXXXXXXXXXXXXXXXNLSVTAPYNADFDGDEMNLHV 415
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E+RAE+ N+ + P I++PQ N P+MGI+QDTL + K+ +RD+FL
Sbjct: 416 PQSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFL 465
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 47/56 (83%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
LV G +++PGA+Y++RD+GERIDLR H S+++LQ G+ VERHI+DGD+++FNR
Sbjct: 315 LVANGPNEHPGARYVIRDSGERIDLRHHKNASEMNLQHGWIVERHIQDGDVILFNR 370
>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
tetraurelia]
Length = 1751
Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/115 (66%), Positives = 95/115 (82%)
Query: 128 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 187
G VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NLS +PYNADFDGDEMN
Sbjct: 425 GVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLSVCTPYNADFDGDEMN 484
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+HVPQS ET AE++ + PRQI+TP++N+PVMGIVQD+L T+RD FL +
Sbjct: 485 MHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTR 539
Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats.
Identities = 79/128 (61%), Positives = 100/128 (78%), Gaps = 3/128 (2%)
Query: 225 DTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS 284
DT +R+ + V VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NLS
Sbjct: 413 DTEDQIRQKINQGVI---VERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLS 469
Query: 285 CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRK 344
+PYNADFDGDEMN+HVPQS ET AE++ + PRQI+TP++N+PVMGIVQD+L
Sbjct: 470 VCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCL 529
Query: 345 MTKRDVFL 352
T+RD FL
Sbjct: 530 FTQRDTFL 537
Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 42 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
G VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NL
Sbjct: 425 GVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNL 468
>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
Length = 1750
Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/115 (66%), Positives = 95/115 (82%)
Query: 128 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 187
G VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NLS +PYNADFDGDEMN
Sbjct: 425 GVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLSVCTPYNADFDGDEMN 484
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+HVPQS ET AE++ + PRQI+TP++N+PVMGIVQD+L T+RD FL +
Sbjct: 485 MHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTR 539
Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats.
Identities = 79/128 (61%), Positives = 100/128 (78%), Gaps = 3/128 (2%)
Query: 225 DTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS 284
DT +R+ + V VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NLS
Sbjct: 413 DTEDQIRQKINQGVI---VERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLS 469
Query: 285 CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRK 344
+PYNADFDGDEMN+HVPQS ET AE++ + PRQI+TP++N+PVMGIVQD+L
Sbjct: 470 VCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCL 529
Query: 345 MTKRDVFL 352
T+RD FL
Sbjct: 530 FTQRDTFL 537
Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 42 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
G VER ++DGD V+FNRQPTLH+MSMMGHRVR+LP+STFR+NL
Sbjct: 425 GVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNL 468
>gi|147783953|emb|CAN74683.1| hypothetical protein VITISV_011311 [Vitis vinifera]
Length = 305
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 93/115 (80%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F V + DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NLS SPYNADFDGDEM
Sbjct: 40 FFSDVRPRMNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSVASPYNADFDGDEM 99
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
N+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+T+RD F++
Sbjct: 100 NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITRRDTFIE 154
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 93/112 (83%)
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
V + DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NLS SPYNADFDGDEMN+HV
Sbjct: 44 VRPRMNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSVASPYNADFDGDEMNMHV 103
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+T+RD F++K
Sbjct: 104 PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITRRDTFIEK 155
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 45 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
V + DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NL
Sbjct: 44 VRPRMNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNL 84
>gi|296084063|emb|CBI24451.3| unnamed protein product [Vitis vinifera]
Length = 1607
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 93/115 (80%)
Query: 239 FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
F V + DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NLS SPYNADFDGDEM
Sbjct: 172 FFSDVRPRMNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSVASPYNADFDGDEM 231
Query: 299 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
N+HVPQS ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+T+RD F++
Sbjct: 232 NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITRRDTFIE 286
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 92/108 (85%)
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
+ DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NLS SPYNADFDGDEMN+HVPQS
Sbjct: 180 MNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSVASPYNADFDGDEMNMHVPQSF 239
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAEV + + P+ I++PQ+NRPVMGIVQDTL RK+T+RD F++K
Sbjct: 240 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITRRDTFIEK 287
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 49 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
+ DGD V+FNRQP+LHKMS MGHR+ ++P+STFR+NL +
Sbjct: 180 MNDGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSV 218
>gi|341858996|gb|AEK97408.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341858998|gb|AEK97409.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 106/157 (67%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 305 KLHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXX 364
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ+ ETRAE++ + +
Sbjct: 365 XXXXXXXXXXXXXXXVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCL 424
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P I++PQ N P+MGIVQD+L V K+ +RD F+DK
Sbjct: 425 VPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK 461
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 73/112 (65%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 349 KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ ETRAE++ + + P I++PQ N P+MGIVQD+L V K+ +RD F+D
Sbjct: 409 VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFID 460
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LV G +++PGAKY++R +G RIDLR H + + + L+ G+KVERH+
Sbjct: 306 LHQLVENGPNEHPGAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLXXXXXXXXXXX 365
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
V+P+STFR+NL +
Sbjct: 366 XXXXXXXXXXXXXXVMPYSTFRLNLSV 392
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 76 LPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVE 132
+P +MN+ RM + V G ++PGA Y++R +G RIDLR+ +L L GY VE
Sbjct: 353 VPERVTKMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVE 412
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LH++SMMGH+V+VLP TFR+NL PYNADFDGDEMNLHVPQ
Sbjct: 413 RHLIDGDIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQ 472
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 230
S E AE + I + R IITP+ P+MG QD ++
Sbjct: 473 SEEAIAEAKEIMLVHRNIITPRYGGPIMGGAQDYISGA 510
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
+I P R + V+D +T + VERH+ DGD+V+FNRQP+LH++SMMGH
Sbjct: 382 VIRPDGRRIDLRYVKDRKELASSLTPGYI----VERHLIDGDIVLFNRQPSLHRISMMGH 437
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+V+VLP TFR+NL PYNADFDGDEMNLHVPQS E AE + I + R IITP+
Sbjct: 438 KVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYGG 497
Query: 330 PVMGIVQDTLTAV 342
P+MG QD ++
Sbjct: 498 PIMGGAQDYISGA 510
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFN 58
M + V G ++PGA Y++R +G RIDLR+ +L L GY VERH+ DGD+V+FN
Sbjct: 365 MRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFN 424
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNL 85
RQP+LH++SMMGH+V+VLP TFR+NL
Sbjct: 425 RQPSLHRISMMGHKVKVLPGRTFRLNL 451
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 117/174 (67%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCG 128
++ +P + N+ M +LV G +PGA Y+V +G R+DLR+ +L L G
Sbjct: 360 KILTVPMTVTEWNIEMARQLVLNGPEVWPGANYVVYPDGRRVDLRYFRDRRELANKLAPG 419
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
+ VERH+ +GD+V+FNRQP+LH+MSMMGH VRVLP TFR++L+ PYNADFDGDEMNL
Sbjct: 420 FIVERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADFDGDEMNL 479
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
HVPQ+ E RAE + + + IITP+ P++G QD +T +T++D F++K
Sbjct: 480 HVPQNEEARAEAKTLMLVQNHIITPRYGGPIIGARQDYITGGYLLTRKDTFVNK 533
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 84/111 (75%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ +GD+V+FNRQP+LH+MSMMGH VRVLP TFR++L+ PYNADFDGDEMNLHV
Sbjct: 422 VERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPGRTFRLHLAVCPPYNADFDGDEMNLHV 481
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ+ E RAE + + + IITP+ P++G QD +T +T++D F++
Sbjct: 482 PQNEEARAEAKTLMLVQNHIITPRYGGPIIGARQDYITGGYLLTRKDTFVN 532
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFNRQ 60
+LV G +PGA Y+V +G R+DLR+ +L L G+ VERH+ +GD+V+FNRQ
Sbjct: 378 QLVLNGPEVWPGANYVVYPDGRRVDLRYFRDRRELANKLAPGFIVERHLMNGDIVLFNRQ 437
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LH+MSMMGH VRVLP TFR++L
Sbjct: 438 PSLHRMSMMGHIVRVLPGRTFRLHL 462
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 76 LPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVE 132
+P +MN+ RM + V G ++PGA Y++R +G RIDLR+ +L L GY VE
Sbjct: 349 VPERVTKMNIERMRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVE 408
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LH++SMMGH+V+VLP TFR+NL PYNADFDGDEMNLHVPQ
Sbjct: 409 RHLIDGDIVLFNRQPSLHRISMMGHKVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQ 468
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 230
S E AE + I + R IITP+ P+MG QD ++
Sbjct: 469 SEEAIAEAKEIMLVHRNIITPRYGGPIMGGAQDYISGA 506
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
+I P R + V+D +T + VERH+ DGD+V+FNRQP+LH++SMMGH
Sbjct: 378 VIRPDGRRIDLRYVKDRKELASSLTPGYI----VERHLIDGDIVLFNRQPSLHRISMMGH 433
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+V+VLP TFR+NL PYNADFDGDEMNLHVPQS E AE + I + R IITP+
Sbjct: 434 KVKVLPGRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYGG 493
Query: 330 PVMGIVQDTLTAV 342
P+MG QD ++
Sbjct: 494 PIMGGAQDYISGA 506
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFN 58
M + V G ++PGA Y++R +G RIDLR+ +L L GY VERH+ DGD+V+FN
Sbjct: 361 MRQYVINGPEKWPGANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFN 420
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNL 85
RQP+LH++SMMGH+V+VLP TFR+NL
Sbjct: 421 RQPSLHRISMMGHKVKVLPGRTFRLNL 447
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 73 VRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGY 129
+ +P + N+ RM E V G ++PGA Y+VR +G RIDLR+ +L L +
Sbjct: 352 ILTVPEKVTKWNIERMREYVINGPDKWPGANYVVRSDGRRIDLRYVKDRKELAATLAPNF 411
Query: 130 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 189
VERH+ DGD+VIFNRQP+LH++SMMGHRVRVLP TFR+NL PYNADFDGDEMNLH
Sbjct: 412 IVERHLVDGDIVIFNRQPSLHRISMMGHRVRVLPGRTFRLNLLVCPPYNADFDGDEMNLH 471
Query: 190 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
VPQS E AE + + R I+TP+ P++G QD ++ +T + L + E
Sbjct: 472 VPQSEEAIAETKELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLLSEDE 526
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 79/110 (71%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+VIFNRQP+LH++SMMGHRVRVLP TFR+NL PYNADFDGDEMNLHV
Sbjct: 413 VERHLVDGDIVIFNRQPSLHRISMMGHRVRVLPGRTFRLNLLVCPPYNADFDGDEMNLHV 472
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E AE + + R I+TP+ P++G QD ++ +T + L
Sbjct: 473 PQSEEAIAETKELMTVHRNILTPRYGGPIIGSAQDYISGAYLLTVKTTLL 522
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFN 58
M E V G ++PGA Y+VR +G RIDLR+ +L L + VERH+ DGD+VIFN
Sbjct: 367 MREYVINGPDKWPGANYVVRSDGRRIDLRYVKDRKELAATLAPNFIVERHLVDGDIVIFN 426
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMNL 85
RQP+LH++SMMGHRVRVLP TFR+NL
Sbjct: 427 RQPSLHRISMMGHRVRVLPGRTFRLNL 453
>gi|226876197|gb|ACO89419.1| RNA polymerase II largest subunit, partial [Phialophora europaea]
Length = 986
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 113/167 (67%), Gaps = 6/167 (3%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHI 135
P R N+ ++ V G +++PGA+Y++RD GERIDLR H K D+ LQ G+ VERHI
Sbjct: 296 PEKVTRFNIEKLKTFVENGPTEHPGARYVIRDTGERIDLR-HVKSRDMTLQYGWTVERHI 354
Query: 136 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 195
++G RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E
Sbjct: 355 QEGX----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 410
Query: 196 TRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+R+E+ ++ + P I++PQ N P+MGI+QDTL + K+ ++VFL K
Sbjct: 411 SRSELRHLCMVPLNIVSPQKNAPLMGIIQDTLCGIYKICDKNVFLTK 457
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 84/126 (66%), Gaps = 7/126 (5%)
Query: 230 VRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT 286
+R + RD+ L VERHI++G RVRV+P+STFR+NLS T
Sbjct: 334 LRHVKSRDMTLQYGWTVERHIQEGX----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVT 389
Query: 287 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+PYNADFDGDEMNLHVPQS E+R+E+ ++ + P I++PQ N P+MGI+QDTL + K+
Sbjct: 390 TPYNADFDGDEMNLHVPQSEESRSELRHLCMVPLNIVSPQKNAPLMGIIQDTLCGIYKIC 449
Query: 347 KRDVFL 352
++VFL
Sbjct: 450 DKNVFL 455
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G +++PGA+Y++RD GERIDLR H K D+ LQ G+ VERHI++G
Sbjct: 310 FVENGPTEHPGARYVIRDTGERIDLR-HVKSRDMTLQYGWTVERHIQEGX----XXXXXX 364
Query: 64 HKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 XXXXXXXXRVRVMPYSTFRLNLSV 388
>gi|357527949|gb|AET80262.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
Length = 321
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527959|gb|AET80267.1| RNA polymerase II large subunit [Heterospilus sp. ST31]
Length = 322
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527899|gb|AET80237.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
Length = 326
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527947|gb|AET80261.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
Length = 326
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527939|gb|AET80257.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527961|gb|AET80268.1| RNA polymerase II large subunit [Heterospilus sp. ST34]
gi|357527969|gb|AET80272.1| RNA polymerase II large subunit [Heterospilus sp. ST54B]
Length = 324
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527851|gb|AET80213.1| RNA polymerase II large subunit [Caenophanes sp. ALW-2011]
Length = 324
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527829|gb|AET80202.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
gi|357527831|gb|AET80203.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
gi|357527837|gb|AET80206.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
gi|357527841|gb|AET80208.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
gi|357527845|gb|AET80210.1| RNA polymerase II large subunit [Pioscelus sp. ALW-2011]
gi|357527847|gb|AET80211.1| RNA polymerase II large subunit [Aphelopsia annulicornis]
gi|357527855|gb|AET80215.1| RNA polymerase II large subunit [Heterospilus sp. GR102]
gi|357527857|gb|AET80216.1| RNA polymerase II large subunit [Heterospilus sp. GR10]
gi|357527859|gb|AET80217.1| RNA polymerase II large subunit [Heterospilus sp. GR19]
gi|357527861|gb|AET80218.1| RNA polymerase II large subunit [Heterospilus sp. GR1]
gi|357527867|gb|AET80221.1| RNA polymerase II large subunit [Heterospilus sp. GR62]
gi|357527873|gb|AET80224.1| RNA polymerase II large subunit [Heterospilus sp. SM84]
gi|357527879|gb|AET80227.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527881|gb|AET80228.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527883|gb|AET80229.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527885|gb|AET80230.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527887|gb|AET80231.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527891|gb|AET80233.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527893|gb|AET80234.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527895|gb|AET80235.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527897|gb|AET80236.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527905|gb|AET80240.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527907|gb|AET80241.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527909|gb|AET80242.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527915|gb|AET80245.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527917|gb|AET80246.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527919|gb|AET80247.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527921|gb|AET80248.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527937|gb|AET80256.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527941|gb|AET80258.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527951|gb|AET80263.1| RNA polymerase II large subunit [Heterospilus sp. ST1A]
gi|357527953|gb|AET80264.1| RNA polymerase II large subunit [Heterospilus sp. ST28]
gi|357527955|gb|AET80265.1| RNA polymerase II large subunit [Heterospilus sp. ST2]
gi|357527957|gb|AET80266.1| RNA polymerase II large subunit [Heterospilus sp. ST2]
gi|357527963|gb|AET80269.1| RNA polymerase II large subunit [Heterospilus sp. ST36]
gi|357527965|gb|AET80270.1| RNA polymerase II large subunit [Heterospilus sp. ST44]
gi|357527971|gb|AET80273.1| RNA polymerase II large subunit [Heterospilus sp. ST63]
gi|357527979|gb|AET80277.1| RNA polymerase II large subunit [Leluthia flavocoxalis]
gi|357527989|gb|AET80282.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
gi|357527991|gb|AET80283.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|226876152|gb|ACO89397.1| RNA polymerase II largest subunit, partial [Capronia parasitica]
Length = 983
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ ++ LV G S++PGA+Y++RD GERIDLR H + ++ LQ G+K
Sbjct: 286 RTLTYPETVTAFNIEKLKRLVANGPSEHPGARYVIRDTGERIDLRHHKRAGEMSLQYGWK 345
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI+DG +ST R+NLS T+PYNADFDGDEMNLHV
Sbjct: 346 VERHIQDGXXXXXXXXXXXXXXXXX----XXXXYSTLRLNLSVTTPYNADFDGDEMNLHV 401
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL +
Sbjct: 402 PQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 453
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI+DG +ST R+NLS T+PYNADFDGDEMNLH
Sbjct: 345 KVERHIQDGXXXXXXXXXXXXXXXXX----XXXXYSTLRLNLSVTTPYNADFDGDEMNLH 400
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE+ N+ + P I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 401 VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 451
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDG 52
LV G S++PGA+Y++RD GERIDLR H + ++ LQ G+KVERHI+DG
Sbjct: 305 LVANGPSEHPGARYVIRDTGERIDLRHHKRAGEMSLQYGWKVERHIQDG 353
>gi|357527995|gb|AET80285.1| RNA polymerase II large subunit [Spathius calligaster]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527871|gb|AET80223.1| RNA polymerase II large subunit [Heterospilus sp. SM67]
Length = 325
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527863|gb|AET80219.1| RNA polymerase II large subunit [Heterospilus sp. GR20]
gi|357527929|gb|AET80252.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527943|gb|AET80259.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
Length = 325
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527849|gb|AET80212.1| RNA polymerase II large subunit [Barbalhoa sp. ALW-2011]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527835|gb|AET80205.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
Length = 324
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVE 132
RV PW+ M LV G ++PGA Y+VR +G +I L+F K + L+ G+ VE
Sbjct: 356 RVTPWNIEEMR----RLVLNGPEKWPGANYVVRPDGRKISLKFVDRKAAAEALEPGFIVE 411
Query: 133 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQ 192
RH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHVPQ
Sbjct: 412 RHLMDGDVVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHVPQ 471
Query: 193 SMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
S E R E + + R I+TP+ P++G +QD ++ +T + L K
Sbjct: 472 SEEARTEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLLSK 521
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V+FNRQP+LH++S+M H VRVLP+ TFR+NL PYNADFDGDEMNLHV
Sbjct: 410 VERHLMDGDVVLFNRQPSLHRISVMAHIVRVLPYKTFRLNLLVCPPYNADFDGDEMNLHV 469
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
PQS E R E + + R I+TP+ P++G +QD ++ +T + L
Sbjct: 470 PQSEEARTEARLLMLVERHILTPRYGGPIIGGLQDYISGAYILTSKTTLL 519
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
M LV G ++PGA Y+VR +G +I L+F K + L+ G+ VERH+ DGD+V+FNR
Sbjct: 365 MRRLVLNGPEKWPGANYVVRPDGRKISLKFVDRKAAAEALEPGFIVERHLMDGDVVLFNR 424
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LH++S+M H VRVLP+ TFR+NL
Sbjct: 425 QPSLHRISVMAHIVRVLPYKTFRLNL 450
>gi|357527931|gb|AET80253.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527833|gb|AET80204.1| RNA polymerase II large subunit [Allorhogas sp. ALW-2011]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527977|gb|AET80276.1| RNA polymerase II large subunit [Johnsonius sp. ALW-2011]
gi|357527987|gb|AET80281.1| RNA polymerase II large subunit [Notiospathius ornaticornis]
Length = 326
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|357527843|gb|AET80209.1| RNA polymerase II large subunit [Pioscelus sp. ALW-2011]
gi|357527889|gb|AET80232.1| RNA polymerase II large subunit [Heterospilus sp. ALW-2011]
gi|357527967|gb|AET80271.1| RNA polymerase II large subunit [Heterospilus sp. ST4]
gi|357527993|gb|AET80284.1| RNA polymerase II large subunit [Notiospathius sp. ALW-2011]
Length = 326
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
VQDTLTAVRKMTKRDVF++K
Sbjct: 61 VQDTLTAVRKMTKRDVFIEK 80
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 275 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 334
PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ N+PVMGI
Sbjct: 1 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 60
Query: 335 VQDTLTAVRKMTKRDVFLD 353
VQDTLTAVRKMTKRDVF++
Sbjct: 61 VQDTLTAVRKMTKRDVFIE 79
>gi|226876211|gb|ACO89426.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN115]
Length = 986
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
R P + N+ R+ V G +++PGA+Y++R +G+RIDLR K D++LQ G+K
Sbjct: 284 RTLTFPETVTNFNIERLKRCVANGPTEWPGARYVIRGSGDRIDLRHAKKSGDINLQYGWK 343
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERHI DGD FR+NLS T+PYNADFDGDEMNLHV
Sbjct: 344 VERHIVDGDXXXXXXXXXXXXXXXXXXXXX----XXFRLNLSVTTPYNADFDGDEMNLHV 399
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PQS E RAE++ + + PR I++PQ N P+MGIVQDTL + K+T+RDVFL K
Sbjct: 400 PQSQEARAELQQLCMVPRNIVSPQKNAPLMGIVQDTLCGIYKLTRRDVFLSK 451
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD FR+NLS T+PYNADFDGDEMNLH
Sbjct: 343 KVERHIVDGDXXXXXXXXXXXXXXXXXXXXX----XXFRLNLSVTTPYNADFDGDEMNLH 398
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E RAE++ + + PR I++PQ N P+MGIVQDTL + K+T+RDVFL
Sbjct: 399 VPQSQEARAELQQLCMVPRNIVSPQKNAPLMGIVQDTLCGIYKLTRRDVFL 449
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGD 53
V G +++PGA+Y++R +G+RIDLR K D++LQ G+KVERHI DGD
Sbjct: 304 VANGPTEWPGARYVIRGSGDRIDLRHAKKSGDINLQYGWKVERHIVDGD 352
>gi|226876247|gb|ACO89444.1| RNA polymerase II largest subunit, partial [Arachnomyces glareosus]
Length = 993
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV G +++PGA+ ++R+ GERIDLR H + ++ LQ G+KVERH
Sbjct: 308 KLHELVAXGPNEHPGARXVIRETGERIDLRHHKRAGEMVLQYGWKVERHXX----XXXXX 363
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ + +
Sbjct: 364 XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQEARAELRELCL 423
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P I++PQ N P+MGIVQDTL + K+ +RDVFL + E
Sbjct: 424 VPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTRDE 462
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 68/83 (81%)
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
RVRV+P+STFR+NLS T+PYNADFDGDEMNLHVPQS E RAE+ + + P I++PQ N
Sbjct: 376 RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQEARAELRELCLVPLNIVSPQRNG 435
Query: 330 PVMGIVQDTLTAVRKMTKRDVFL 352
P+MGIVQDTL + K+ +RDVFL
Sbjct: 436 PLMGIVQDTLCGIYKICRRDVFL 458
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ELV G +++PGA+ ++R+ GERIDLR H + ++ LQ G+KVERH
Sbjct: 309 LHELVAXGPNEHPGARXVIRETGERIDLRHHKRAGEMVLQYGWKVERHXX----XXXXXX 364
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
RVRV+P+STFR+NL +
Sbjct: 365 XXXXXXXXXXXRVRVMPYSTFRLNLSV 391
>gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [Cercomonas sp. ATCC 50318]
Length = 417
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Query: 75 VLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVER 133
P R N+ M LVR G + +PGAK I+RD+G+++DLR+ K SD HL+ GY+VER
Sbjct: 305 TFPEMVTRFNIAEMRRLVRNGPNVHPGAKTIIRDDGKKVDLRYVKKSSDQHLEVGYRVER 364
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 186
HIRDGD+++FNRQP+LHKMS+MGH+VRVLPWSTFR+NLSCT+PYNADFDGDEM
Sbjct: 365 HIRDGDVILFNRQPSLHKMSIMGHKVRVLPWSTFRLNLSCTTPYNADFDGDEM 417
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 74/85 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M LVR G + +PGAK I+RD+G+++DLR+ K SD HL+ GY+VERHIRDGD+++FNRQ
Sbjct: 318 MRRLVRNGPNVHPGAKTIIRDDGKKVDLRYVKKSSDQHLEVGYRVERHIRDGDVILFNRQ 377
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMS+MGH+VRVLPWSTFR+NL
Sbjct: 378 PSLHKMSIMGHKVRVLPWSTFRLNL 402
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 57/57 (100%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 298
+VERHIRDGD+++FNRQP+LHKMS+MGH+VRVLPWSTFR+NLSCT+PYNADFDGDEM
Sbjct: 361 RVERHIRDGDVILFNRQPSLHKMSIMGHKVRVLPWSTFRLNLSCTTPYNADFDGDEM 417
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,092,038
Number of Sequences: 23463169
Number of extensions: 248396122
Number of successful extensions: 633496
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10657
Number of HSP's successfully gapped in prelim test: 300
Number of HSP's that attempted gapping in prelim test: 592961
Number of HSP's gapped (non-prelim): 32825
length of query: 353
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 210
effective length of database: 9,003,962,200
effective search space: 1890832062000
effective search space used: 1890832062000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)