BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1131
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRVR+LPWSTFR+NL +
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNLSV 488
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRD+F+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFID 550
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHRV++LPWSTFRMNL +
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNLSV 482
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNR
Sbjct: 392 KMRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 452 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL R TKRD F++K
Sbjct: 512 VPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 100/112 (89%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 436 KVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 495
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQDTL R TKRD F++
Sbjct: 496 VPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFME 547
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 76/87 (87%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNRQ
Sbjct: 393 MRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMMGHR++V+P+STFR+NL +
Sbjct: 453 PSLHKMSMMGHRIKVMPYSTFRLNLSV 479
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 141/168 (83%), Gaps = 4/168 (2%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ +++ ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERH
Sbjct: 386 VTPYNIYQLQ----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERH 441
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
IRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 442 IRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSE 501
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL +
Sbjct: 502 ETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR 549
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 437 RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 497 VPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 547
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERHIRDGD+VIFNRQP+
Sbjct: 396 ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMMGHR+RV+P+STFR+NL +
Sbjct: 456 LHKMSMMGHRIRVMPYSTFRLNLSV 480
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RKMT RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE 542
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RDNG+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVMPYSTFRLNLSV 474
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 131/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 391 RLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 450
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ I
Sbjct: 451 QPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICA 510
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 511 VPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 546
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 97/112 (86%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 435 KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 494
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ I P QI++PQ+N+PVMGIVQDTL VRKMT RD+F++
Sbjct: 495 VPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIE 546
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 72/87 (82%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E VR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQ
Sbjct: 392 LTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQ 451
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 452 PSLHKMSMMCHRVKVMPYSTFRLNLSV 478
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 16/182 (8%)
Query: 76 LPWSTFRMNL------------RMFELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKP 120
+PWS +NL R+ ELV G PG AKYI+RD+G+R+DLR+ K
Sbjct: 377 VPWS-IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 435
Query: 121 SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD 180
SD HL+ GYKVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNAD
Sbjct: 436 SDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNAD 495
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN+HVPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F+
Sbjct: 496 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFI 555
Query: 241 DK 242
+K
Sbjct: 556 EK 557
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH++DGD V+FNRQP+LHKMS+MGHR+R++P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 445 KVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAEV + + P+ I++PQ NRPVMGIVQDTL RK+TKRD F++
Sbjct: 505 VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 556
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 3 ELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
ELV G PG AKYI+RD+G+R+DLR+ K SD HL+ GYKVERH++DGD V+FNR
Sbjct: 401 ELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNR 460
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNLRM 87
QP+LHKMS+MGHR+R++P+STFR+NL +
Sbjct: 461 QPSLHKMSIMGHRIRIMPYSTFRLNLSV 488
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 447
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 448 PSLHKMSMMAHRVKVIPYSTFRLNLSV 474
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 216 bits (549), Expect = 3e-55, Method: Composition-based stats.
Identities = 97/156 (62%), Positives = 128/156 (82%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 148
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 149 LHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 208
LHKMS+MGH+ ++LP+STFR+NLS TSPYNADFDGDEMNLH+ QS ETR+E++++ + R
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQR 542
Query: 209 QIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
QI++PQ N+PVMGIVQD+L A+RK T+RD FL K E
Sbjct: 543 QIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 578
Score = 172 bits (436), Expect = 3e-42, Method: Composition-based stats.
Identities = 77/127 (60%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 227 LTAVRKMTKRDV-FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
L VR+ +++++ + KVERH+ D D ++FNRQP+LHKMS+MGH+ ++LP+STFR+NLS
Sbjct: 448 LRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSV 507
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
TSPYNADFDGDEMNLH+ QS ETR+E++++ + RQI++PQ N+PVMGIVQD+L A+RK
Sbjct: 508 TSPYNADFDGDEMNLHLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKF 567
Query: 346 TKRDVFL 352
T+RD FL
Sbjct: 568 TRRDNFL 574
Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV RG ++PGAKYI+RDNG + DLR + S+ L+ GYKVERH+ D D ++FNRQP+
Sbjct: 423 KLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQPS 482
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMS+MGH+ ++LP+STFR+NL
Sbjct: 483 LHKMSIMGHKAKILPYSTFRLNL 505
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 132/174 (75%), Gaps = 3/174 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYK 130
++ P N+ R+ +LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYV 400
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 190
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL++ E
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514
Score = 164 bits (416), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++ GD+V+FNRQP+LHKMSMM H RV+ TFR+NLS TSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS ++AE+E + + RQII+PQ+N+PVMGIVQDTLT +R T RD FL+
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLN 511
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGA Y++R +G++IDL F+ SD+ L+ GY VERH++ GD+V+FNRQP+
Sbjct: 361 KLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYVVERHMQSGDVVLFNRQPS 418
Query: 63 LHKMSMMGHRVRVLPWSTFRMNLRM 87
LHKMSMM H RV+ TFR+NL +
Sbjct: 419 LHKMSMMAHYARVMGNKTFRLNLSV 443
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 395 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL +STFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 453 QPTLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 513 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL +STFR+NLSCT+PYNADFDGDEMNL
Sbjct: 436 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYSTFRLNLSCTTPYNADFDGDEMNL 495
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 496 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 548
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 396 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL +STFR+NL
Sbjct: 454 PTLHRMSMMGHRVRVLNYSTFRLNL 478
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 2/157 (1%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNR
Sbjct: 395 RLTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNLHVPQS+ T+AE+ + +
Sbjct: 453 QPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMM 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ ++P + P MGIVQD+L ++T +D FLDK
Sbjct: 513 VPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK 549
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ +GD+V+FNRQPTLH+MSMMGHRVRVL ++TFR+NLSCT+PYNADFDGDEMNL
Sbjct: 436 DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNL 495
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQS+ T+AE+ + + P+ ++P + P MGIVQD+L ++T +D FLD
Sbjct: 496 HVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLD 548
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ E RR + YP A YI NG L S + L G VERH+ +GD+V+FNRQ
Sbjct: 396 LTEFARR--TVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH+MSMMGHRVRVL ++TFR+NL
Sbjct: 454 PTLHRMSMMGHRVRVLNYNTFRLNL 478
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 107/159 (67%), Gaps = 6/159 (3%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKV 131
R+ PW+ + LR F V G ++PGA Y++R +G RIDLR+ +L L GY +
Sbjct: 352 RITPWNIEK--LRQF--VINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYII 407
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH+ DGD+V+FNRQP+LH++SMM HRVRVL TFR+NL PYNADFDGDEMNLHVP
Sbjct: 408 ERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVP 467
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 230
QS E AE + I + + IITP+ P++G QD ++
Sbjct: 468 QSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGA 506
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 74/100 (74%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
+ERH+ DGD+V+FNRQP+LH++SMM HRVRVL TFR+NL PYNADFDGDEMNLHV
Sbjct: 407 IERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHV 466
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
PQS E AE + I + + IITP+ P++G QD ++
Sbjct: 467 PQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGA 506
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLH--LQCGYKVERHIRDGDLVIFNRQ 60
+ V G ++PGA Y++R +G RIDLR+ +L L GY +ERH+ DGD+V+FNRQ
Sbjct: 363 QFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQ 422
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LH++SMM HRVRVL TFR+NL
Sbjct: 423 PSLHRISMMAHRVRVLKGLTFRLNL 447
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCG 128
R+ +P +N+ R+ + + G ++PGA Y+++ +G RIDLR+ +L + G
Sbjct: 345 RMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAG 404
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
Y VERH+ DGD+V+FNRQP+LH++SMM H+VRVLP TFR+NL PYNADFDGDEMNL
Sbjct: 405 YVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNL 464
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
HVPQS E AE + + + IITP+ P++G QD ++ ++ + L
Sbjct: 465 HVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLL 516
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 4/143 (2%)
Query: 210 IITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGH 269
+I P R + V+D +T V VERH+ DGD+V+FNRQP+LH++SMM H
Sbjct: 378 VIKPDGRRIDLRYVKDRKELASSITAGYV----VERHLVDGDVVLFNRQPSLHRISMMAH 433
Query: 270 RVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNR 329
+VRVLP TFR+NL PYNADFDGDEMNLHVPQS E AE + + + IITP+
Sbjct: 434 KVRVLPGRTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGG 493
Query: 330 PVMGIVQDTLTAVRKMTKRDVFL 352
P++G QD ++ ++ + L
Sbjct: 494 PIIGGGQDYISGAYLLSVKTTLL 516
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFNRQPTLHK 65
G ++PGA Y+++ +G RIDLR+ +L + GY VERH+ DGD+V+FNRQP+LH+
Sbjct: 368 GPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHR 427
Query: 66 MSMMGHRVRVLPWSTFRMNL 85
+SMM H+VRVLP TFR+NL
Sbjct: 428 ISMMAHKVRVLPGRTFRLNL 447
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 110/171 (64%), Gaps = 5/171 (2%)
Query: 73 VRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKV 131
V V W+ RM E + G +PGA Y++R +G +I + K L +L+ GY V
Sbjct: 347 VYVTEWNIDRMR----EYIENGPDVHPGANYVIRPDGRKIRIYNETKEVVLENLKPGYIV 402
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVP 191
ERH++DGD+V+FNRQP+LH+MSMM H+VRVLP+ TFR+NL PYNADFDGDEMN+HV
Sbjct: 403 ERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVF 462
Query: 192 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
Q+ E+RAE + + I++P+ P++G + D ++ +T++ +
Sbjct: 463 QTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSE 513
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 80/110 (72%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH++DGD+V+FNRQP+LH+MSMM H+VRVLP+ TFR+NL PYNADFDGDEMN+HV
Sbjct: 402 VERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHV 461
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
Q+ E+RAE + + I++P+ P++G + D ++ +T++
Sbjct: 462 FQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVF 511
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNR 59
M E + G +PGA Y++R +G +I + K L +L+ GY VERH++DGD+V+FNR
Sbjct: 357 MREYIENGPDVHPGANYVIRPDGRKIRIYNETKEVVLENLKPGYIVERHLKDGDIVLFNR 416
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMNL 85
QP+LH+MSMM H+VRVLP+ TFR+NL
Sbjct: 417 QPSLHRMSMMAHQVRVLPYKTFRLNL 442
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDL-RFHPKPSDLHLQCGYKVERHIRDGDLVIFN 144
++ ++V G +YPGA Y++ G RI L + + L G+ VERH+ DGD+V+FN
Sbjct: 366 KLRKMVLNGPEKYPGANYVIDPEGRRIRLMENNLETVAEKLDIGWTVERHLLDGDVVLFN 425
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LH+MS+M HRVRV+P+ TFR+NLS PYNADFDGDEMNLHVPQ+ E +AE + +
Sbjct: 426 RQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILM 485
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
II+P+ P++ +QD ++ +T+ + ++ E
Sbjct: 486 EVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTE 525
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 81/111 (72%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V+FNRQP+LH+MS+M HRVRV+P+ TFR+NLS PYNADFDGDEMNLHV
Sbjct: 412 VERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGDEMNLHV 471
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ+ E +AE + + II+P+ P++ +QD ++ +T+ + +
Sbjct: 472 PQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFE 522
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDL-RFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQP 61
++V G +YPGA Y++ G RI L + + L G+ VERH+ DGD+V+FNRQP
Sbjct: 369 KMVLNGPEKYPGANYVIDPEGRRIRLMENNLETVAEKLDIGWTVERHLLDGDVVLFNRQP 428
Query: 62 TLHKMSMMGHRVRVLPWSTFRMNL 85
+LH+MS+M HRVRV+P+ TFR+NL
Sbjct: 429 SLHRMSIMAHRVRVMPYRTFRLNL 452
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFN 144
R+ + V G ++PGA YI+ +G + L+F + L+ G VERHI DGD+++FN
Sbjct: 396 RLQKYVINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFN 455
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK+S+M H+ RV+PW T R N +PYNADFDGDEMN+H+PQ+ E RAE +
Sbjct: 456 RQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILM 515
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ITP+N P++ QD LTA +++RD F ++
Sbjct: 516 GVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 80/113 (70%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+++FNRQP+LHK+S+M H+ RV+PW T R N +PYNADFDGDEMN+
Sbjct: 440 DIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNI 499
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQ+ E RAE + +ITP+N P++ QD LTA +++RD F +
Sbjct: 500 HLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYE 552
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G ++PGA YI+ +G + L+F + L+ G VERHI DGD+++FNRQP+L
Sbjct: 401 VINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSL 460
Query: 64 HKMSMMGHRVRVLPWSTFRMN 84
HK+S+M H+ RV+PW T R N
Sbjct: 461 HKLSIMSHKARVMPWRTLRFN 481
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 10/180 (5%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYI-VRDNGERIDLRFHPKPSDLH----- 124
RV P F+ N + LVR G +PGA + + G + L+ D H
Sbjct: 391 RVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKKSLK---NERDRHRLAAR 447
Query: 125 LQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGD 184
L G VERH+ +GDLV+FNRQP+LH++SMM HR RVLP+ TFR N C +PYNADFDGD
Sbjct: 448 LAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGD 507
Query: 185 EMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
EMN+H Q+ + RAE + T R II+ +N P++ QD L A +T RDVF D+ E
Sbjct: 508 EMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGE 567
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 83/122 (68%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
++ R D VERH+ +GDLV+FNRQP+LH++SMM HR RVLP+ TFR N C +PYNA
Sbjct: 443 RLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNA 502
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMN+H Q+ + RAE + T R II+ +N P++ QD L A +T RDVF
Sbjct: 503 DFDGDEMNVHFVQTEKARAEALQLMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVF 562
Query: 352 LD 353
D
Sbjct: 563 FD 564
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query: 1 MFELVRRGNSQYPGAKYI-VRDNGERIDLRFHPKPSDLH-----LQCGYKVERHIRDGDL 54
M LVR G +PGA + + G + L+ D H L G VERH+ +GDL
Sbjct: 407 MRRLVRNGPHVHPGATTVYLAQEGSKKSLK---NERDRHRLAARLAVGDIVERHVMNGDL 463
Query: 55 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN 84
V+FNRQP+LH++SMM HR RVLP+ TFR N
Sbjct: 464 VLFNRQPSLHRVSMMAHRARVLPFRTFRFN 493
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 148 bits (373), Expect = 6e-35, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDN-GERIDLRFHPK---PSDLHLQ 126
+V P R N + + L+ G + +PGA Y+++ N + +LRF + +LH+
Sbjct: 397 KVLTYPEKCTRYNRKKLQKLILSGPNVHPGANYLLKQNESAKRNLRFGDRVKLAKNLHI- 455
Query: 127 CGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEM 186
G VERHI DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNADFDGDEM
Sbjct: 456 -GDVVERHIEDGDIVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEM 514
Query: 187 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
N+HVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F D+
Sbjct: 515 NIHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDR 570
Score = 135 bits (339), Expect = 7e-31, Method: Composition-based stats.
Identities = 55/113 (48%), Positives = 79/113 (69%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNADFDGDEMN+
Sbjct: 457 DVVERHIEDGDIVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNI 516
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F D
Sbjct: 517 HVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFD 569
Score = 79.7 bits (195), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Query: 3 ELVRRGNSQYPGAKYIVRDN-GERIDLRFHPK---PSDLHLQCGYKVERHIRDGDLVIFN 58
+L+ G + +PGA Y+++ N + +LRF + +LH+ G VERHI DGD+V+FN
Sbjct: 415 KLILSGPNVHPGANYLLKQNESAKRNLRFGDRVKLAKNLHI--GDVVERHIEDGDIVLFN 472
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LH++S++ H ++ PW TFR+N
Sbjct: 473 RQPSLHRLSILSHYAKIRPWRTFRLN 498
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGE-RIDLRFHPKPS-DLHLQCG 128
+V P R N ++ EL+ G + +PGA Y+++ N + R +LR+ + +LQ G
Sbjct: 400 KVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIG 459
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNADFDGDEMNL
Sbjct: 460 DVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNL 519
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
HVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F D+
Sbjct: 520 HVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRA 574
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K+ K D VERH+ DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNA
Sbjct: 451 KLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNA 510
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F
Sbjct: 511 DFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSF 570
Query: 352 LD 353
D
Sbjct: 571 YD 572
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFNRQ 60
EL+ G + +PGA Y+++ N + R +LR+ + +LQ G VERH+ DGD+V+FNRQ
Sbjct: 418 ELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQ 477
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LH++S++ H ++ PW TFR+N
Sbjct: 478 PSLHRLSILSHYAKIRPWRTFRLN 501
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 6/158 (3%)
Query: 89 ELVRRGNSQYPGAKYIV-RDNGERIDLRFHPK---PSDLHLQCGYKVERHIRDGDLVIFN 144
+ +R G +PGA Y++ R++G + LRF + DL + G VERH+ D D+V+FN
Sbjct: 400 DCIRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKI--GDIVERHLHDNDVVLFN 457
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK+S+M H V+V PW T R N PYNADFDGDEMNLHVPQ+ E + E +
Sbjct: 458 RQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELM 517
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+++P+N P++ QD +TA ++ +D FLD+
Sbjct: 518 GIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 76/113 (67%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ D D+V+FNRQP+LHK+S+M H V+V PW T R N PYNADFDGDEMNL
Sbjct: 442 DIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNL 501
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E + E + +++P+N P++ QD +TA ++ +D FLD
Sbjct: 502 HVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLD 554
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 3 ELVRRGNSQYPGAKYIV-RDNGERIDLRFHPK---PSDLHLQCGYKVERHIRDGDLVIFN 58
+ +R G +PGA Y++ R++G + LRF + DL + G VERH+ D D+V+FN
Sbjct: 400 DCIRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKI--GDIVERHLHDNDVVLFN 457
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHK+S+M H V+V PW T R N
Sbjct: 458 RQPSLHKLSIMAHLVKVRPWRTLRFN 483
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 13/179 (7%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRD----NGERIDLRFHPKPSDLHLQC-- 127
+V P++ R+ +L+ G+ ++PG Y+++ +G+ + + ++ +
Sbjct: 355 KVTPYNIERIR----KLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVEN 410
Query: 128 ---GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGD 184
G VERH+ DGD+V++NRQP+LH+MS+M H+V+VLP+ TFR NL PYNADFDGD
Sbjct: 411 IVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGD 470
Query: 185 EMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
EMN+HVPQS E RAE E + + + II+P+ P++G + D ++ +T + D+
Sbjct: 471 EMNVHVPQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNFIKDEA 529
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 80/111 (72%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VERH+ DGD+V++NRQP+LH+MS+M H+V+VLP+ TFR NL PYNADFDGDEMN+HV
Sbjct: 417 VERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHV 476
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS E RAE E + + + II+P+ P++G + D ++ +T + D
Sbjct: 477 PQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNFIKD 527
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 9/92 (9%)
Query: 3 ELVRRGNSQYPGAKYIVRD----NGERIDLRFHPKPSDLHLQC-----GYKVERHIRDGD 53
+L+ G+ ++PG Y+++ +G+ + + ++ + G VERH+ DGD
Sbjct: 366 KLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVENIVDGMVVERHLGDGD 425
Query: 54 LVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
+V++NRQP+LH+MS+M H+V+VLP+ TFR NL
Sbjct: 426 VVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNL 457
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 72 RVRVLPWSTFRMNLR-MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCG 128
++ P + N+ M +LVR G +PGA +I + + + + + L+ G
Sbjct: 388 KILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFG 447
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNADFDGDEMNL
Sbjct: 448 DIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNL 507
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F D+ +
Sbjct: 508 HLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFN 58
M +LVR G +PGA +I + + + + + L+ G VERH+ DGD+V+FN
Sbjct: 404 MRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFN 463
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHK+S+M H RV P TFR N
Sbjct: 464 RQPSLHKLSIMAHIARVKPHRTFRFN 489
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 72 RVRVLPWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCG 128
++ P + N+ +LVR G +PGA +I + + + + + L+ G
Sbjct: 388 KILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFG 447
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNADFDGDEMNL
Sbjct: 448 DIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNL 507
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F D+ +
Sbjct: 508 HLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 69.3 bits (168), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H RV P TFR N
Sbjct: 466 PSLHKLSIMAHLARVKPHRTFRFN 489
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 98/145 (67%), Gaps = 9/145 (6%)
Query: 73 VRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGY 129
V V W+ RM E + G +PGA Y++R +G +I R + + D+ +L+ GY
Sbjct: 347 VYVTEWNIDRMK----EHIENGPDVHPGANYVIRPDGRKI--RAYNETKDVVLENLKPGY 400
Query: 130 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 189
VERH++DGD+V+FNRQP+LH+MSMM H VRVLP+ TFR+NL PYNADFDGDEMN+H
Sbjct: 401 IVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNADFDGDEMNMH 460
Query: 190 VPQSMETRAEVENIHVTPRQIITPQ 214
V Q+ E+RAE + + I++P+
Sbjct: 461 VFQTEESRAEAKTLMRVQDHILSPR 485
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 6/97 (6%)
Query: 236 RDVFLDK------VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPY 289
+DV L+ VERH++DGD+V+FNRQP+LH+MSMM H VRVLP+ TFR+NL PY
Sbjct: 389 KDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPY 448
Query: 290 NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 326
NADFDGDEMN+HV Q+ E+RAE + + I++P+
Sbjct: 449 NADFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPR 485
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 5/88 (5%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGYKVERHIRDGDLVIF 57
M E + G +PGA Y++R +G +I R + + D+ +L+ GY VERH++DGD+V+F
Sbjct: 357 MKEHIENGPDVHPGANYVIRPDGRKI--RAYNETKDVVLENLKPGYIVERHLKDGDIVLF 414
Query: 58 NRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
NRQP+LH+MSMM H VRVLP+ TFR+NL
Sbjct: 415 NRQPSLHRMSMMAHEVRVLPYKTFRLNL 442
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 8/156 (5%)
Query: 87 MFELVRRGNS---QY----PGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKVERHIRDG 138
M EL++RG + Q+ G Y++R +G RI + + + G+ VER + +G
Sbjct: 363 MRELIKRGRNPRDQFGRYVTGVNYVIRPDGRRIKITDQNAAENADRIDIGWTVERQLMEG 422
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
D+V+FNRQP+LH+MSMMGH VR+LP TFR NL+ +PYNADFDGDEMNLHV Q E RA
Sbjct: 423 DIVLFNRQPSLHRMSMMGHTVRILPGQTFRFNLAVCTPYNADFDGDEMNLHVIQKEEARA 482
Query: 199 EVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
E I QI++P+ P++G + D +TA+ +T
Sbjct: 483 EARIIMKVQEQIMSPRFGGPIIGGIHDHVTALFLLT 518
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 76/104 (73%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
VER + +GD+V+FNRQP+LH+MSMMGH VR+LP TFR NL+ +PYNADFDGDEMNLHV
Sbjct: 415 VERQLMEGDIVLFNRQPSLHRMSMMGHTVRILPGQTFRFNLAVCTPYNADFDGDEMNLHV 474
Query: 303 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
Q E RAE I QI++P+ P++G + D +TA+ +T
Sbjct: 475 IQKEEARAEARIIMKVQEQIMSPRFGGPIIGGIHDHVTALFLLT 518
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 1 MFELVRRGNS---QY----PGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKVERHIRDG 52
M EL++RG + Q+ G Y++R +G RI + + + G+ VER + +G
Sbjct: 363 MRELIKRGRNPRDQFGRYVTGVNYVIRPDGRRIKITDQNAAENADRIDIGWTVERQLMEG 422
Query: 53 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
D+V+FNRQP+LH+MSMMGH VR+LP TFR NL
Sbjct: 423 DIVLFNRQPSLHRMSMMGHTVRILPGQTFRFNL 455
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 138 bits (347), Expect = 7e-32, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 72 RVRVLPWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCG 128
++ P + N+ +LV+ G +PGA +I + + + + + L+ G
Sbjct: 388 KILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYG 447
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNADFDGDEMNL
Sbjct: 448 DIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNL 507
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F D+ +
Sbjct: 508 HLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats.
Identities = 61/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + + D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFNRQ 60
+LV+ G +PGA +I + + + + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H RV P TFR N
Sbjct: 466 PSLHKLSIMAHLARVKPHRTFRFN 489
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats.
Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 13/164 (7%)
Query: 89 ELVRRGNSQYPGAKYIVR--------DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 140
+LV+ G YPGA ++++ ++G L++ KP + L+ G V+R + DGD+
Sbjct: 398 QLVKNGKRVYPGANFVIKHVIDAEGNESGHIYHLKYVDKP--ISLKPGDIVKRQLIDGDI 455
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWS---TFRMNLSCTSPYNADFDGDEMNLHVPQSMETR 197
VIFNRQP+LHK+SMMGH+ V+P + TFR+N+S T PYNADFDGDEMNLHVPQS++T
Sbjct: 456 VIFNRQPSLHKLSMMGHKCHVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTA 515
Query: 198 AEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
E+ I R+ ++P + + QDTL T+ D+ +D
Sbjct: 516 TEILLIANASRRFVSPATSNIAIKAKQDTLMGSYVQTEPDMEID 559
Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats.
Identities = 59/116 (50%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS---TFRMNLSCTSPYNADFDGDE 297
D V+R + DGD+VIFNRQP+LHK+SMMGH+ V+P + TFR+N+S T PYNADFDGDE
Sbjct: 444 DIVKRQLIDGDIVIFNRQPSLHKLSMMGHKCHVIPDNNLLTFRVNVSVTDPYNADFDGDE 503
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
MNLHVPQS++T E+ I R+ ++P + + QDTL T+ D+ +D
Sbjct: 504 MNLHVPQSIQTATEILLIANASRRFVSPATSNIAIKAKQDTLMGSYVQTEPDMEID 559
Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 13/94 (13%)
Query: 3 ELVRRGNSQYPGAKYIVR--------DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL 54
+LV+ G YPGA ++++ ++G L++ KP + L+ G V+R + DGD+
Sbjct: 398 QLVKNGKRVYPGANFVIKHVIDAEGNESGHIYHLKYVDKP--ISLKPGDIVKRQLIDGDI 455
Query: 55 VIFNRQPTLHKMSMMGHRVRVLPWS---TFRMNL 85
VIFNRQP+LHK+SMMGH+ V+P + TFR+N+
Sbjct: 456 VIFNRQPSLHKLSMMGHKCHVIPDNNLLTFRVNV 489
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 12/151 (7%)
Query: 93 RGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHK 151
R NSQ+ +I L++ K + +L G VERHI DGD+V+FNRQP+LH+
Sbjct: 534 RKNSQF-----------NKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHR 582
Query: 152 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 211
MS+M H+ +++ + TFR N SPYNADFDGDEMNL VPQ+ E RAE + +I
Sbjct: 583 MSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLDVPQTEEARAEALYLMNVKHNLI 642
Query: 212 TPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TP+N ++ + QD L+A +T +D FLD+
Sbjct: 643 TPKNGEVIIALTQDFLSASYIITNKDTFLDR 673
Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/113 (52%), Positives = 79/113 (69%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+V+FNRQP+LH+MS+M H+ +++ + TFR N SPYNADFDGDEMNL
Sbjct: 560 DVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNL 619
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQ+ E RAE + +ITP+N ++ + QD L+A +T +D FLD
Sbjct: 620 DVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLD 672
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 12/79 (15%)
Query: 7 RGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHK 65
R NSQ+ +I L++ K + +L G VERHI DGD+V+FNRQP+LH+
Sbjct: 534 RKNSQF-----------NKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHR 582
Query: 66 MSMMGHRVRVLPWSTFRMN 84
MS+M H+ +++ + TFR N
Sbjct: 583 MSIMCHKAKIMDFKTFRFN 601
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGYKVERHIRDGDLVIFNRQP 147
VR G +PGA Y+ R +G R+ R K + ++ G++V+RH+ DGD++IFNRQP
Sbjct: 437 VRNGPEGHPGANYVTRPDGRRV--RVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQP 494
Query: 148 TLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTP 207
+LH+MS+M H V V+P+ TFR+N PYNADFDGDEMN+H Q+ E RAE +
Sbjct: 495 SLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQ 554
Query: 208 RQIITPQNNRPVMGIVQDTLTAVRKMT 234
QI++P+ ++G +QD ++ +T
Sbjct: 555 EQILSPRFGENIIGAIQDHISGTYLLT 581
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+V+RH+ DGD++IFNRQP+LH+MS+M H V V+P+ TFR+N PYNADFDGDEMN+H
Sbjct: 477 EVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMH 536
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
Q+ E RAE + QI++P+ ++G +QD ++ +T
Sbjct: 537 ALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLT 581
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGYKVERHIRDGDLVIFNRQP 61
VR G +PGA Y+ R +G R+ R K + ++ G++V+RH+ DGD++IFNRQP
Sbjct: 437 VRNGPEGHPGANYVTRPDGRRV--RVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQP 494
Query: 62 TLHKMSMMGHRVRVLPWSTFRMN 84
+LH+MS+M H V V+P+ TFR+N
Sbjct: 495 SLHRMSIMAHEVVVMPYKTFRLN 517
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 91 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGYKVERHIRDGDLVIFNRQP 147
VR G +PGA Y+ R +G R+ R K + ++ G++V+RH+ DGD++IFNRQP
Sbjct: 437 VRNGPEGHPGANYVTRPDGRRV--RVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQP 494
Query: 148 TLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTP 207
+LH+MS+M H V V+P+ TFR+N PYNADFDGDEMN+H Q+ E RAE +
Sbjct: 495 SLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQ 554
Query: 208 RQIITPQNNRPVMGIVQDTLTAVRKMT 234
QI++P+ ++G +QD ++ +T
Sbjct: 555 EQILSPRFGENIIGAIQDHISGTYLLT 581
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+V+RH+ DGD++IFNRQP+LH+MS+M H V V+P+ TFR+N PYNADFDGDEMN+H
Sbjct: 477 EVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMH 536
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
Q+ E RAE + QI++P+ ++G +QD ++ +T
Sbjct: 537 ALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLT 581
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL---HLQCGYKVERHIRDGDLVIFNRQP 61
VR G +PGA Y+ R +G R+ R K + ++ G++V+RH+ DGD++IFNRQP
Sbjct: 437 VRNGPEGHPGANYVTRPDGRRV--RVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQP 494
Query: 62 TLHKMSMMGHRVRVLPWSTFRMN 84
+LH+MS+M H V V+P+ TFR+N
Sbjct: 495 SLHRMSIMAHEVVVMPYKTFRLN 517
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 100/183 (54%), Gaps = 16/183 (8%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQ---------- 126
P ++F N ++ + V G QYPGA +I +NG I+L + + L
Sbjct: 476 PVTSFNYN-QLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHA 534
Query: 127 ---CGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS--TFRMNLSCTSPYNADF 181
KV RH+ GD V+ NRQPTLHK +MGHRV+VL + T RM+ S S YNADF
Sbjct: 535 PRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADF 594
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
DGDEMN+H PQS+ AE+ I Q + P+N P+ G++QD + +TKRD
Sbjct: 595 DGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFT 654
Query: 242 KVE 244
K +
Sbjct: 655 KAD 657
Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/113 (49%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS--TFRMNLSCTSPYNADFDGDEMN 299
KV RH+ GD V+ NRQPTLHK +MGHRV+VL + T RM+ S S YNADFDGDEMN
Sbjct: 541 KVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMN 600
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
+H PQS+ AE+ I Q + P+N P+ G++QD + +TKRD
Sbjct: 601 IHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLF 653
Score = 61.6 bits (148), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQ-------------CGYKVERHI 49
+ V G QYPGA +I +NG I+L + + L KV RH+
Sbjct: 487 QAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHL 546
Query: 50 RDGDLVIFNRQPTLHKMSMMGHRVRVL 76
GD V+ NRQPTLHK +MGHRV+VL
Sbjct: 547 LSGDYVLANRQPTLHKPGIMGHRVKVL 573
>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
SV=1
Length = 1026
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 118 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPY 177
P + L+ G+ V R++++GD+++ NRQPTLHK SMM RV+++ TF+ NL+CT PY
Sbjct: 526 PSKKFIKLEEGWIVHRYLQNGDILVLNRQPTLHKASMMALRVKIMDVKTFKFNLACTKPY 585
Query: 178 NADFDGDEMNLHVPQSMETRAEVENIHVTPRQ-IITPQNNRPVMGIVQDTLTAVRKMTKR 236
NADFDGDEMN H PQS E++AE+ + TP+Q I++ Q+ +P + IVQD+LT M+K
Sbjct: 586 NADFDGDEMNAHAPQSEESKAELFTLS-TPKQCIMSCQSGKPNLTIVQDSLTGAYLMSKE 644
Query: 237 D 237
+
Sbjct: 645 N 645
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 81/108 (75%), Gaps = 2/108 (1%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHV 302
V R++++GD+++ NRQPTLHK SMM RV+++ TF+ NL+CT PYNADFDGDEMN H
Sbjct: 539 VHRYLQNGDILVLNRQPTLHKASMMALRVKIMDVKTFKFNLACTKPYNADFDGDEMNAHA 598
Query: 303 PQSMETRAEVENIHVTPRQ-IITPQNNRPVMGIVQDTLTAVRKMTKRD 349
PQS E++AE+ + TP+Q I++ Q+ +P + IVQD+LT M+K +
Sbjct: 599 PQSEESKAELFTLS-TPKQCIMSCQSGKPNLTIVQDSLTGAYLMSKEN 645
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 32 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 85
P + L+ G+ V R++++GD+++ NRQPTLHK SMM RV+++ TF+ NL
Sbjct: 526 PSKKFIKLEEGWIVHRYLQNGDILVLNRQPTLHKASMMALRVKIMDVKTFKFNL 579
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 15/182 (8%)
Query: 74 RVLPWSTFRMNLRMFELVRRGNSQYPGAKYIV--RDNGE--RIDL-------RFHPKPSD 122
+V ++ RMNL + V G +YPGA +I NGE +DL R H
Sbjct: 478 QVTCFAPARMNL-LKHCVVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFF 536
Query: 123 LHLQCGYK--VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNA 179
Q G V RHI +GD VIFNRQPTLHK SMMG+RV+VL S T R + + +NA
Sbjct: 537 AMAQSGVTLIVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNA 596
Query: 180 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 239
DFDGDEMN+HVPQS+ETRAEVE + + P + RP+ G++QD + A +T RD F
Sbjct: 597 DFDGDEMNVHVPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKF 656
Query: 240 LD 241
D
Sbjct: 657 FD 658
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLH 301
V RHI +GD VIFNRQPTLHK SMMG+RV+VL S T R + + +NADFDGDEMN+H
Sbjct: 547 VYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVH 606
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS+ETRAEVE + + P + RP+ G++QD + A +T RD F D
Sbjct: 607 VPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFD 658
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 5 VRRGNSQYPGAKYIV--RDNGE--RIDL-------RFHPKPSDLHLQCGYK--VERHIRD 51
V G +YPGA +I NGE +DL R H Q G V RHI +
Sbjct: 494 VVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTLIVYRHILN 553
Query: 52 GDLVIFNRQPTLHKMSMMGHRVRVLPWS 79
GD VIFNRQPTLHK SMMG+RV+VL S
Sbjct: 554 GDRVIFNRQPTLHKPSMMGYRVKVLSGS 581
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 89 ELVRRGNSQYPGAKYIVRDNGERIDL--------------RFHPKPSDLHLQCGYKVERH 134
+ V G ++PGA I ++G + L P + KV RH
Sbjct: 521 QAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRH 580
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLP-WSTFRMNLSCTSPYNADFDGDEMNLHVPQS 193
I++ D+V+ NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEMN+H PQ+
Sbjct: 581 IKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQN 640
Query: 194 METRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
RAE N+ T Q +TP + PV G++QD ++A +T +D F +
Sbjct: 641 ENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTR 689
Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 25/172 (14%)
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
DG ++L + S+E R + N Q++TP +N + TL
Sbjct: 540 DGSLVSL-IGMSVEQRKALAN------QLLTPSSN-----VSTHTLN------------K 575
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP-WSTFRMNLSCTSPYNADFDGDEMNL 300
KV RHI++ D+V+ NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEMN+
Sbjct: 576 KVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNM 635
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQ+ RAE N+ T Q +TP + PV G++QD ++A +T +D F
Sbjct: 636 HFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFF 687
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDL--------------RFHPKPSDLHLQCGYKVERH 48
+ V G ++PGA I ++G + L P + KV RH
Sbjct: 521 QAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRH 580
Query: 49 IRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
I++ D+V+ NRQPTLHK SMMGH+VRVLP
Sbjct: 581 IKNRDVVLMNRQPTLHKASMMGHKVRVLP 609
>sp|Q196X0|RPB1_IIV3 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-090L PE=3
SV=1
Length = 1377
Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 104 IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 163
I+R+ ++R+ P+ + L+ G ++R + DGD V+ NRQPTLHK SMM +V + P
Sbjct: 418 IIRNGKALKEIRY-PERKQIELEVGDVIKRQLMDGDYVLLNRQPTLHKASMMAFKVVIKP 476
Query: 164 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIV 223
T ++NL+ T P+N DFDGDEMN+HVPQS E AE++ + + I++ QN +P + IV
Sbjct: 477 VKTLKINLAITKPFNCDFDGDEMNIHVPQSYEAIAELKELSCASKCIMSVQNGKPNVAIV 536
Query: 224 QDTLTAVRKMTKRDVFLDKVER 245
QD+L + +++ F ++R
Sbjct: 537 QDSLIGLWFLSRDQWFCQTLKR 558
Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 75/111 (67%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D ++R + DGD V+ NRQPTLHK SMM +V + P T ++NL+ T P+N DFDGDEMN+
Sbjct: 442 DVIKRQLMDGDYVLLNRQPTLHKASMMAFKVVIKPVKTLKINLAITKPFNCDFDGDEMNI 501
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
HVPQS E AE++ + + I++ QN +P + IVQD+L + +++ F
Sbjct: 502 HVPQSYEAIAELKELSCASKCIMSVQNGKPNVAIVQDSLIGLWFLSRDQWF 552
Score = 58.9 bits (141), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 18 IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
I+R+ ++R+ P+ + L+ G ++R + DGD V+ NRQPTLHK SMM +V + P
Sbjct: 418 IIRNGKALKEIRY-PERKQIELEVGDVIKRQLMDGDYVLLNRQPTLHKASMMAFKVVIKP 476
Query: 78 WSTFRMNL 85
T ++NL
Sbjct: 477 VKTLKINL 484
>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
octocarinatus GN=RPB1 PE=3 SV=1
Length = 478
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Query: 87 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 146
M +LV G +++PGAKYI + G+ IDL + K ++ + GY +ERH+++ D V+FNRQ
Sbjct: 382 MRKLVINGPNKWPGAKYIKGEGGKMIDLSY-AKTTETFIDYGYVIERHLKNDDFVLFNRQ 440
Query: 147 PTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG 183
P+LHKMS+MGHRV+VLP+STFR+NLS T+PYNADFDG
Sbjct: 441 PSLHKMSIMGHRVKVLPYSTFRLNLSVTAPYNADFDG 477
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M +LV G +++PGAKYI + G+ IDL + K ++ + GY +ERH+++ D V+FNRQ
Sbjct: 382 MRKLVINGPNKWPGAKYIKGEGGKMIDLSY-AKTTETFIDYGYVIERHLKNDDFVLFNRQ 440
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMS+MGHRV+VLP+STFR+NL +
Sbjct: 441 PSLHKMSIMGHRVKVLPYSTFRLNLSV 467
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Query: 101 AKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKM-----SMM 155
A +I+ +N + L+F+ + Q G V RH G + R K ++M
Sbjct: 278 ANHIINENYQL--LQFYCATLIDNEQAGQMVSRHKSGGKAIKAIRARLKGKEGRLRGNLM 335
Query: 156 GHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI----- 210
G RV + R ++C + D L VP+S+ + + VTP+ I
Sbjct: 336 GKRVDF----SARTVITCDPTLDLD------QLGVPRSIAENITIPEV-VTPQNIDEMRK 384
Query: 211 --ITPQNNRPVMGIVQD---TLTAVRKMTKRDVFLDK---VERHIRDGDLVIFNRQPTLH 262
I N P ++ + + + F+D +ERH+++ D V+FNRQP+LH
Sbjct: 385 LVINGPNKWPGAKYIKGEGGKMIDLSYAKTTETFIDYGYVIERHLKNDDFVLFNRQPSLH 444
Query: 263 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDG 295
KMS+MGHRV+VLP+STFR+NLS T+PYNADFDG
Sbjct: 445 KMSIMGHRVKVLPYSTFRLNLSVTAPYNADFDG 477
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 17/171 (9%)
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
DG ++L +P ++E R + N Q++TPQ+N ++ + R +
Sbjct: 548 DGTLISL-MPLTIEQRTALAN------QLLTPQSN-----LISSPYSYSRLINTNK---- 591
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+ + + YNADFDGDEMN+
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNM 651
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
H PQS R+E + I T Q + P + P+ G++QD + +T +D F
Sbjct: 652 HFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTF 702
Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 24/191 (12%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLR--------------FHPKPSD 122
P + + N M V G ++PGA +I ++G I L P+ +
Sbjct: 518 PVTLYNFN-EMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNL 576
Query: 123 LHLQCGY--------KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSC 173
+ Y KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+ +
Sbjct: 577 ISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYAN 636
Query: 174 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 233
+ YNADFDGDEMN+H PQS R+E + I T Q + P + P+ G++QD + +
Sbjct: 637 CNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWL 696
Query: 234 TKRDVFLDKVE 244
T +D F + E
Sbjct: 697 TCKDTFYTRDE 707
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLR--------------FHPKPSDLHLQCGY--- 43
M V G ++PGA +I ++G I L P+ + + Y
Sbjct: 527 MRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRL 586
Query: 44 -----KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+
Sbjct: 587 INTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMH 633
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens
GN=POLR1A PE=1 SV=2
Length = 1720
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 29/188 (15%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF------------------ 116
V PW+ + + V G + +PGA ++ ++G R L
Sbjct: 472 VTPWNVQELR----QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPAT 527
Query: 117 -HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 528 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 582
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 583 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMT 642
Query: 235 KRDVFLDK 242
R F +
Sbjct: 643 TRGCFFTR 650
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 18/172 (10%)
Query: 187 NLHVPQSM-----ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
N+H SM +R + + +T R+ + Q P G + T +
Sbjct: 489 NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKI----------- 537
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
V RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN
Sbjct: 538 -VCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 596
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 597 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 24/94 (25%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRF-------------------HPKPSDLHLQCGY 43
+ V G + +PGA ++ ++G R L PKP + C
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVC-- 539
Query: 44 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
RH+++GD+++ NRQPTLH+ S+ HR R+LP
Sbjct: 540 ---RHVKNGDILLLNRQPTLHRPSIQAHRARILP 570
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus
GN=Polr1a PE=1 SV=2
Length = 1717
Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 29/188 (15%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRF------------------ 116
V PW+ LR + V G + +PGA ++ ++G R L
Sbjct: 479 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPAT 534
Query: 117 -HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 535 GAPKPQGTKVVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 589
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 590 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 649
Query: 235 KRDVFLDK 242
R F +
Sbjct: 650 IRGCFFTR 657
Score = 107 bits (266), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 187 NLHVPQSM-----ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
N+H SM +R + ++ R+ + Q P G + T V
Sbjct: 496 NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKV----------- 544
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
V RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN
Sbjct: 545 -VCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 603
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 604 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 24/94 (25%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRF-------------------HPKPSDLHLQCGY 43
+ V G + +PGA ++ ++G R L PKP + C
Sbjct: 489 QAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVC-- 546
Query: 44 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
RH+++GD+++ NRQPTLH+ S+ HR R+LP
Sbjct: 547 ---RHVKNGDILLLNRQPTLHRPSIQAHRARILP 577
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 29/188 (15%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFH----------------- 117
V PW+ + + V G + +PGA ++ ++G R L
Sbjct: 479 VTPWNVQELR----QAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPST 534
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR +LP R++ +
Sbjct: 535 GIPKPQGAKVVC-----RHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANC 589
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 590 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 649
Query: 235 KRDVFLDK 242
R F +
Sbjct: 650 IRGCFFTR 657
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 187 NLHVPQSM-----ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
N+H SM +R + + T R+ + Q P GI + V
Sbjct: 496 NVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKV----------- 544
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
V RH+++GD+++ NRQPTLH+ S+ HR +LP R++ + YNADFDGDEMN
Sbjct: 545 -VCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNA 603
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 604 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 24/94 (25%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFH-------------------PKPSDLHLQCGY 43
+ V G + +PGA ++ ++G R L PKP + C
Sbjct: 489 QAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVC-- 546
Query: 44 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
RH+++GD+++ NRQPTLH+ S+ HR +LP
Sbjct: 547 ---RHVKNGDILLLNRQPTLHRPSIQAHRAHILP 577
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila
melanogaster GN=RpI1 PE=1 SV=2
Length = 1642
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 35/227 (15%)
Query: 69 MGHRVRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNG-------------ERIDLR 115
+ + V V W+ + ++V G +PGA YI NG E +
Sbjct: 448 LSYPVPVTEWNVTELR----KMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKL 503
Query: 116 FHPKPSDLHLQCGYK-VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL-PWSTFRMNLSC 173
P D G K V RH+ +GD+++ NRQP+LHK S+MGH+ R+L TFR++ S
Sbjct: 504 LLSNPKD-----GIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSN 558
Query: 174 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 233
YNADFDGDEMN H PQS RAE N+ + P++ P+ G++QD + + K+
Sbjct: 559 CKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKL 618
Query: 234 TKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 280
+ R F ++ + +Q +S + +++LP + +
Sbjct: 619 SIRGRFFNREDY-----------QQLVFQGLSQLKKDIKLLPPTILK 654
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL-PWSTFRMNLSCTSPYNADFDGDEMNLH 301
V RH+ +GD+++ NRQP+LHK S+MGH+ R+L TFR++ S YNADFDGDEMN H
Sbjct: 515 VHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAH 574
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS RAE N+ + P++ P+ G++QD + + K++ R F +
Sbjct: 575 YPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 3 ELVRRGNSQYPGAKYIVRDNG-------------ERIDLRFHPKPSDLHLQCGYK-VERH 48
++V G +PGA YI NG E + P D G K V RH
Sbjct: 464 KMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKD-----GIKIVHRH 518
Query: 49 IRDGDLVIFNRQPTLHKMSMMGHRVRVL-PWSTFRM---NLRMFELVRRG---NSQYP 99
+ +GD+++ NRQP+LHK S+MGH+ R+L TFR+ N + + G N+ YP
Sbjct: 519 VLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYP 576
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ G QYPG + + + + D L+ G + R + GD+ FNR
Sbjct: 361 RLMPYFLNGKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNR 419
Query: 146 QPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
QP+L + S+ HR+ VL STF+MN+S + YNADFDGD+MNL VP S+ +R E E
Sbjct: 420 QPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAEL 479
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I+ +++ PV G VQD+ +T+ + + K
Sbjct: 480 LCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK 519
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDE 297
D + R + GD+ FNRQP+L + S+ HR+ VL STF+MN+S + YNADFDGD+
Sbjct: 403 DILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQ 462
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
MNL VP S+ +R E E + I+ +++ PV G VQD+ +T+ +
Sbjct: 463 MNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 67
G QYPG + + + + D L+ G + R + GD+ FNRQP+L + S
Sbjct: 369 GKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERSS 427
Query: 68 MMGHRVRVL---PWSTFRMNL 85
+ HR+ VL STF+MN+
Sbjct: 428 IGVHRIVVLENPKISTFQMNV 448
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ G QYPG + + + + D L+ G + R + GD+ FNR
Sbjct: 361 RLMPYFLNGKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNR 419
Query: 146 QPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
QP+L + S+ HR+ VL STF+MN+S + YNADFDGD+MNL VP S+ +R E E
Sbjct: 420 QPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAEL 479
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I+ +++ PV G VQD+ +T+ + + K
Sbjct: 480 LCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK 519
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDE 297
D + R + GD+ FNRQP+L + S+ HR+ VL STF+MN+S + YNADFDGD+
Sbjct: 403 DILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQ 462
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
MNL VP S+ +R E E + I+ +++ PV G VQD+ +T+ +
Sbjct: 463 MNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 67
G QYPG + + + + D L+ G + R + GD+ FNRQP+L + S
Sbjct: 369 GKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERSS 427
Query: 68 MMGHRVRVL---PWSTFRMNL 85
+ HR+ VL STF+MN+
Sbjct: 428 IGVHRIVVLENPKISTFQMNV 448
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ G QYPG + + + + D L+ G + R + GD+ FNR
Sbjct: 361 RLMPYFLNGKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNR 419
Query: 146 QPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
QP+L + S+ HR+ VL STF+MN+S + YNADFDGD+MNL VP S+ +R E E
Sbjct: 420 QPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAEL 479
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I+ +++ PV G VQD+ +T+ + + K
Sbjct: 480 LCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK 519
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDE 297
D + R + GD+ FNRQP+L + S+ HR+ VL STF+MN+S + YNADFDGD+
Sbjct: 403 DILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQ 462
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
MNL VP S+ +R E E + I+ +++ PV G VQD+ +T+ +
Sbjct: 463 MNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 67
G QYPG + + + + D L+ G + R + GD+ FNRQP+L + S
Sbjct: 369 GKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERSS 427
Query: 68 MMGHRVRVL---PWSTFRMNL 85
+ HR+ VL STF+MN+
Sbjct: 428 IGVHRIVVLENPKISTFQMNV 448
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ G QYPG + + + + D L+ G + R + GD+ FNR
Sbjct: 361 RLMPYFLNGKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNR 419
Query: 146 QPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
QP+L + S+ HR+ VL STF+MN+S + YNADFDGD+MNL VP S+ +R E E
Sbjct: 420 QPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAEL 479
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I+ +++ PV G VQD+ +T+ + + K
Sbjct: 480 LCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK 519
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDE 297
D + R + GD+ FNRQP+L + S+ HR+ VL STF+MN+S + YNADFDGD+
Sbjct: 403 DILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQ 462
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
MNL VP S+ +R E E + I+ +++ PV G VQD+ +T+ +
Sbjct: 463 MNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 67
G QYPG + + + + D L+ G + R + GD+ FNRQP+L + S
Sbjct: 369 GKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERSS 427
Query: 68 MMGHRVRVL---PWSTFRMNL 85
+ HR+ VL STF+MN+
Sbjct: 428 IGVHRIVVLENPKISTFQMNV 448
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ G QYPG + + + + D L+ G + R + GD+ FNR
Sbjct: 361 RLMPYFLNGKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNR 419
Query: 146 QPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVEN 202
QP+L + S+ HR+ VL STF+MN+S + YNADFDGD+MNL VP S+ +R E E
Sbjct: 420 QPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAEL 479
Query: 203 IHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ I+ +++ PV G VQD+ +T+ + + K
Sbjct: 480 LCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK 519
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP---WSTFRMNLSCTSPYNADFDGDE 297
D + R + GD+ FNRQP+L + S+ HR+ VL STF+MN+S + YNADFDGD+
Sbjct: 403 DILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQ 462
Query: 298 MNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
MNL VP S+ +R E E + I+ +++ PV G VQD+ +T+ +
Sbjct: 463 MNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 67
G QYPG + + + + D L+ G + R + GD+ FNRQP+L + S
Sbjct: 369 GKRQYPGCSRVYKQITQSVH-DIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERSS 427
Query: 68 MMGHRVRVL---PWSTFRMNL 85
+ HR+ VL STF+MN+
Sbjct: 428 IGVHRIVVLENPKISTFQMNV 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,717,387
Number of Sequences: 539616
Number of extensions: 5942854
Number of successful extensions: 16875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13907
Number of HSP's gapped (non-prelim): 2765
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)