Your job contains 1 sequence.
>psy1131
MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ
PTLHKMSMMGHRVRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKP
SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNAD
FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL
DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL
HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1131
(353 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 786 1.0e-77 2
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 728 5.3e-72 1
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 726 8.6e-72 1
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 726 2.1e-70 1
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 726 2.5e-70 1
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 726 2.5e-70 1
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 726 2.5e-70 1
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 726 2.5e-70 1
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 726 2.5e-70 1
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 724 4.1e-70 1
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 680 1.8e-65 1
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 680 1.8e-65 1
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 606 3.2e-60 2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 622 2.4e-59 1
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 568 1.3e-54 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 577 1.5e-54 1
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 577 1.5e-54 1
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 544 1.2e-51 2
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 517 7.4e-49 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 382 6.3e-34 1
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 375 3.8e-33 1
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 372 8.0e-33 1
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 370 1.3e-32 1
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 366 3.3e-32 1
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 361 1.2e-31 1
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 360 1.4e-31 1
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 330 1.0e-30 2
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 330 1.0e-30 2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 350 1.7e-30 1
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 350 1.7e-30 1
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 350 1.7e-30 1
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 349 2.1e-30 1
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 348 2.7e-30 1
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 346 4.4e-30 1
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 345 5.3e-30 1
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 345 5.6e-30 1
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 337 4.0e-29 1
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 292 6.2e-27 3
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 315 1.1e-26 1
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 314 1.5e-26 1
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 306 1.0e-25 1
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 306 1.1e-25 1
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 303 2.2e-25 1
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 281 7.8e-25 2
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 272 4.5e-22 1
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 271 5.5e-22 1
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 271 5.7e-22 1
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 267 1.4e-21 1
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 267 1.5e-21 1
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 267 1.5e-21 1
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 267 1.5e-21 1
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 267 1.6e-21 1
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 265 2.5e-21 1
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 262 2.5e-21 1
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 262 5.2e-21 1
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 262 5.2e-21 1
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 220 6.7e-15 1
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 218 6.6e-14 2
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 183 1.1e-10 1
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 180 2.4e-10 1
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 180 2.4e-10 1
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 177 5.1e-10 1
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 174 9.1e-10 1
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 174 9.1e-10 1
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 169 4.0e-09 1
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 169 4.0e-09 1
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 168 4.0e-09 1
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 163 1.8e-08 1
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 161 3.1e-08 1
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 156 4.3e-08 1
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 156 4.3e-08 1
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 156 4.3e-08 1
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 156 4.3e-08 1
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 159 5.1e-08 1
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 159 5.1e-08 1
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 148 7.8e-07 1
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 146 1.5e-06 1
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 141 4.5e-06 1
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 786 (281.7 bits), Expect = 1.0e-77, Sum P(2) = 1.0e-77
Identities = 146/157 (92%), Positives = 152/157 (96%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
RM ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNR
Sbjct: 393 RMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNR 452
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH+
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 512
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+ +
Sbjct: 513 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549
Score = 560 (202.2 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 104/111 (93%), Positives = 109/111 (98%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+RD DLVIFNRQPTLHKMSMMGHRV+VLPWSTFRMNLSCTSPYNADFDGDEMNLH
Sbjct: 437 KVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQSMETRAEVENIH+TPRQIITPQ N+PVMGIVQDTLTAVRKMTKRDVF+
Sbjct: 497 VPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547
Score = 433 (157.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 80/85 (94%), Positives = 82/85 (96%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M ELVRRGNSQYPGAKYIVRDNGERIDLRFHPK SDLHLQCGYKVERH+RD DLVIFNRQ
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLHKMSMMGHRV+VLPWSTFRMNL
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNL 478
Score = 41 (19.5 bits), Expect = 1.0e-77, Sum P(2) = 1.0e-77
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 250 GDLVIFNRQPTLHKMSMMGHRVRV-LPWSTFRM 281
G+LV F PT+ K+S R WS R+
Sbjct: 890 GELVEFQNMPTV-KLSNKSFEKRFKFDWSNERL 921
Score = 41 (19.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 138 GDLVIFNRQPTLHKMSMMGHRVRV-LPWSTFRM 169
G+LV F PT+ K+S R WS R+
Sbjct: 890 GELVEFQNMPTV-KLSNKSFEKRFKFDWSNERL 921
Score = 37 (18.1 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 14/68 (20%), Positives = 26/68 (38%)
Query: 43 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLRMFELVRRGNSQYPGAK 102
+++ +HI D + I P + M V +P R + MF + +
Sbjct: 214 WEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLS 273
Query: 103 YIVRDNGE 110
I++ N E
Sbjct: 274 DIIKANNE 281
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 131/158 (82%), Positives = 149/158 (94%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++V
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERV 558
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 1.7e-47, P = 1.7e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 726 (260.6 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 5.9e-47, P = 5.9e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 8.4e-38, P = 8.4e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 726 (260.6 bits), Expect = 2.5e-70, P = 2.5e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 726 (260.6 bits), Expect = 2.5e-70, P = 2.5e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 726 (260.6 bits), Expect = 2.5e-70, P = 2.5e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 726 (260.6 bits), Expect = 2.5e-70, P = 2.5e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 726 (260.6 bits), Expect = 2.5e-70, P = 2.5e-70
Identities = 131/159 (82%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNR
Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 559
Score = 506 (183.2 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 91/112 (81%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+VIFNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 445 KVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 505 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 556
Score = 420 (152.9 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 75/83 (90%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+VIFNRQPT
Sbjct: 404 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPT 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 464 LHKMSMMGHRVRILPWSTFRLNL 486
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 724 (259.9 bits), Expect = 4.1e-70, P = 4.1e-70
Identities = 129/159 (81%), Positives = 149/159 (93%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNR
Sbjct: 398 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNR 457
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE++ + +
Sbjct: 458 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 517
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL++ E
Sbjct: 518 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGE 556
Score = 504 (182.5 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 89/112 (79%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQPTLHKMSMMGHRVR+LPWSTFR+NLS T+PYNADFDGDEMNLH
Sbjct: 442 KVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 501
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE++ + + PR I+TPQ+NRPVMGIVQDTLTAVRK TKRDVFL+
Sbjct: 502 LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 553
Score = 418 (152.2 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 73/83 (87%), Positives = 81/83 (97%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVRRGNSQYPGAKYI+RDNG+RIDLRFHPKPSDLHLQ GYKVERH+ DGD+++FNRQPT
Sbjct: 401 ELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPT 460
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRVR+LPWSTFR+NL
Sbjct: 461 LHKMSMMGHRVRILPWSTFRLNL 483
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 680 (244.4 bits), Expect = 1.8e-65, P = 1.8e-65
Identities = 119/156 (76%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 507 (183.5 bits), Expect = 4.9e-47, P = 4.9e-47
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 380 (138.8 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 63/83 (75%), Positives = 79/83 (95%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRV++LPWSTFRMNL
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNL 480
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 680 (244.4 bits), Expect = 1.8e-65, P = 1.8e-65
Identities = 119/156 (76%), Positives = 144/156 (92%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNR
Sbjct: 395 KLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNR 454
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+E I +
Sbjct: 455 QPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAM 514
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 515 VPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 507 (183.5 bits), Expect = 4.9e-47, P = 4.9e-47
Identities = 90/112 (80%), Positives = 105/112 (93%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERH++DGD+++FNRQPTLHKMSMMGHRV++LPWSTFRMNLS TSPYNADFDGDEMNLH
Sbjct: 439 RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLH 498
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
+PQS+ETRAE+E I + PRQ+ITPQ N+PVMGIVQDTL AVR MTKRDVF+D
Sbjct: 499 LPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 380 (138.8 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 63/83 (75%), Positives = 79/83 (95%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELV RG++QYPGAKYI+R+NG R+DLR+HP+ +DLHLQ GY+VERH++DGD+++FNRQPT
Sbjct: 398 ELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPT 457
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHRV++LPWSTFRMNL
Sbjct: 458 LHKMSMMGHRVKILPWSTFRMNL 480
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 606 (218.4 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 110/168 (65%), Positives = 141/168 (83%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERH 134
V P++ +++ ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERH
Sbjct: 386 VTPYNIYQLQ----ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERH 441
Query: 135 IRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSM 194
IRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+HVPQS
Sbjct: 442 IRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSE 501
Query: 195 ETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL +
Sbjct: 502 ETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR 549
Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
Identities = 84/111 (75%), Positives = 101/111 (90%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
+VERHIRDGD+VIFNRQP+LHKMSMMGHR+RV+P+STFR+NLS TSPYNADFDGDEMN+H
Sbjct: 437 RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMH 496
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS ETRAE++ I + P+QI++PQ+N+PVMGIVQDTL VRK + RD FL
Sbjct: 497 VPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 547
Score = 336 (123.3 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 59/83 (71%), Positives = 74/83 (89%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G ++PGAKYI+RD GERIDLR+H + D+ L+ G++VERHIRDGD+VIFNRQP+
Sbjct: 396 ELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPS 455
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMMGHR+RV+P+STFR+NL
Sbjct: 456 LHKMSMMGHRIRVMPYSTFRLNL 478
Score = 56 (24.8 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 233 MTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHR-VRVLPWSTF 279
M + DVFL +E H+ + + P + ++ MM H+ VR + TF
Sbjct: 1259 MIEEDVFLKTIEGHMLES--ISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 622 (224.0 bits), Expect = 2.4e-59, P = 2.4e-59
Identities = 113/157 (71%), Positives = 136/157 (86%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNR
Sbjct: 392 KMRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNR 451
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMMGHR++V+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV I +
Sbjct: 452 QPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMM 511
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
PRQI++PQ+NRPVMGIVQDTL R TKRD F++K
Sbjct: 512 VPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548
Score = 466 (169.1 bits), Expect = 1.0e-42, P = 1.0e-42
Identities = 90/130 (69%), Positives = 109/130 (83%)
Query: 227 LTAVRKMTKRDVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 283
L V+K++ D L+ KVERHI DGD+VIFNRQP+LHKMSMMGHR++V+P+STFR+NL
Sbjct: 420 LRFVKKVS--DTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNL 477
Query: 284 SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVR 343
S TSPYNADFDGDEMNLHVPQ++ETRAEV I + PRQI++PQ+NRPVMGIVQDTL R
Sbjct: 478 SVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSR 537
Query: 344 KMTKRDVFLD 353
TKRD F++
Sbjct: 538 LFTKRDCFME 547
Score = 345 (126.5 bits), Expect = 7.7e-30, P = 7.7e-30
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
M EL+R G S++PGAKYI+R++G R DLRF K SD HL+CGYKVERHI DGD+VIFNRQ
Sbjct: 393 MRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQ 452
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHKMSMMGHR++V+P+STFR+NL
Sbjct: 453 PSLHKMSMMGHRIKVMPYSTFRLNL 477
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 568 (205.0 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 101/156 (64%), Positives = 130/156 (83%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 387 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 447 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 507 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 435 (158.2 bits), Expect = 2.0e-39, P = 2.0e-39
Identities = 79/112 (70%), Positives = 95/112 (84%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 431 KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 490
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
VPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL +RK+T RD F++
Sbjct: 491 VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE 542
Score = 305 (112.4 bits), Expect = 9.7e-27, Sum P(2) = 9.7e-27
Identities = 53/83 (63%), Positives = 71/83 (85%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQP+
Sbjct: 390 QLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPS 449
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRV+V+P+STFR+NL
Sbjct: 450 LHKMSMMAHRVKVIPYSTFRLNL 472
Score = 41 (19.5 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 227 LTAVRKMTKRDVFLDKVERHIRD 249
LTA MT R+ F D V R + +
Sbjct: 702 LTAKHGMTLRESFEDNVVRFLNE 724
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 577 (208.2 bits), Expect = 1.5e-54, P = 1.5e-54
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 458 (166.3 bits), Expect = 7.2e-42, P = 7.2e-42
Identities = 97/186 (52%), Positives = 127/186 (68%)
Query: 178 NADFDGDEMNLHVPQSMETRAEVE---NIHVTPRQIITPQNNRP-VMGIVQDTLTAVR-K 232
N D D + + + +++ T E+ NIH + N P +++DT + +
Sbjct: 358 NLDLDQVGVPISIAKTL-TYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLR 416
Query: 233 MTKR--DVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTS 287
KR D+ L KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TS
Sbjct: 417 YNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTS 476
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 347
PYNADFDGDEMNLHVPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT
Sbjct: 477 PYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTL 536
Query: 348 RDVFLD 353
RD+F++
Sbjct: 537 RDIFIE 542
Score = 307 (113.1 bits), Expect = 8.5e-26, P = 8.5e-26
Identities = 54/83 (65%), Positives = 71/83 (85%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQP+
Sbjct: 390 ELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPS 449
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRVRV+P+STFR+NL
Sbjct: 450 LHKMSMMAHRVRVMPYSTFRLNL 472
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 577 (208.2 bits), Expect = 1.5e-54, P = 1.5e-54
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNR
Sbjct: 387 KLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNR 446
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETR+E+ I
Sbjct: 447 QPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICA 506
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
P QI++PQ+N+PVMGIVQDTL +RKMT RD+F++
Sbjct: 507 VPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE 542
Score = 458 (166.3 bits), Expect = 7.2e-42, P = 7.2e-42
Identities = 97/186 (52%), Positives = 127/186 (68%)
Query: 178 NADFDGDEMNLHVPQSMETRAEVE---NIHVTPRQIITPQNNRP-VMGIVQDTLTAVR-K 232
N D D + + + +++ T E+ NIH + N P +++DT + +
Sbjct: 358 NLDLDQVGVPISIAKTL-TYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLR 416
Query: 233 MTKR--DVFLD---KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTS 287
KR D+ L KVERH+ D D V+FNRQP+LHKMSMM HRVRV+P+STFR+NLS TS
Sbjct: 417 YNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTS 476
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 347
PYNADFDGDEMNLHVPQS ETR+E+ I P QI++PQ+N+PVMGIVQDTL +RKMT
Sbjct: 477 PYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTL 536
Query: 348 RDVFLD 353
RD+F++
Sbjct: 537 RDIFIE 542
Score = 307 (113.1 bits), Expect = 8.5e-26, P = 8.5e-26
Identities = 54/83 (65%), Positives = 71/83 (85%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
ELVR G +++PGAKY++RD G+RIDLR++ + D+ LQ G+KVERH+ D D V+FNRQP+
Sbjct: 390 ELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPS 449
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHKMSMM HRVRV+P+STFR+NL
Sbjct: 450 LHKMSMMAHRVRVMPYSTFRLNL 472
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 544 (196.6 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 99/157 (63%), Positives = 128/157 (81%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
++ +LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNR
Sbjct: 401 KLQQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNR 460
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS E+RAE++ + +
Sbjct: 461 QPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLAL 520
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
P+ I++PQ N P+MGIVQDTL + K+ +RDVFL K
Sbjct: 521 VPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTK 557
Score = 433 (157.5 bits), Expect = 3.3e-39, P = 3.3e-39
Identities = 77/111 (69%), Positives = 97/111 (87%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ DGD+++FNRQP+LHK SMMGHRVRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQS E+RAE++ + + P+ I++PQ N P+MGIVQDTL + K+ +RDVFL
Sbjct: 505 VPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 555
Score = 292 (107.8 bits), Expect = 6.1e-25, Sum P(2) = 6.1e-25
Identities = 53/83 (63%), Positives = 68/83 (81%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPT 62
+LV G +++PGA+YIVRDNGERIDLR + L G+KVERH+ DGD+++FNRQP+
Sbjct: 404 QLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPS 463
Query: 63 LHKMSMMGHRVRVLPWSTFRMNL 85
LHK SMMGHRVRV+P+STFR+NL
Sbjct: 464 LHKESMMGHRVRVMPYSTFRLNL 486
Score = 37 (18.1 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 237 DVFLDKVERHIRD 249
DV L K+E+H+ D
Sbjct: 1277 DVTLKKLEQHLLD 1289
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 517 (187.1 bits), Expect = 7.4e-49, Sum P(2) = 7.4e-49
Identities = 103/184 (55%), Positives = 132/184 (71%)
Query: 62 TLHKMSMMGHRVRVL--PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHP 118
+LH++ + R L P + N+ R+ + V G +++PGAKYIVR +G RIDLR
Sbjct: 374 SLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVK 433
Query: 119 KPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYN 178
L+ G KVERH+ GD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYN
Sbjct: 434 NRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYN 493
Query: 179 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 238
ADFDGDEMNLHVPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDV
Sbjct: 494 ADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDV 553
Query: 239 FLDK 242
FL K
Sbjct: 554 FLTK 557
Score = 420 (152.9 bits), Expect = 8.2e-38, P = 8.2e-38
Identities = 77/111 (69%), Positives = 93/111 (83%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLH 301
KVERH+ GD +IFNRQP+LHK SMMGH+VRV+P+STFR+NLS TSPYNADFDGDEMNLH
Sbjct: 445 KVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 504
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
VPQ+ ETRAEV+ + + P I++PQ N P+MGIVQDTL K+ +RDVFL
Sbjct: 505 VPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFL 555
Score = 258 (95.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/85 (57%), Positives = 63/85 (74%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ + V G +++PGAKYIVR +G RIDLR L+ G KVERH+ GD +IFNRQ
Sbjct: 402 LHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQ 461
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
P+LHK SMMGH+VRV+P+STFR+NL
Sbjct: 462 PSLHKESMMGHQVRVMPYSTFRLNL 486
Score = 38 (18.4 bits), Expect = 7.4e-49, Sum P(2) = 7.4e-49
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 289 YNADFDGD-EMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVM 332
Y D D ++ L+V + +E ++ I R + PQ+ PV+
Sbjct: 959 YKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVV 1003
Score = 38 (18.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 177 YNADFDGD-EMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVM 220
Y D D ++ L+V + +E ++ I R + PQ+ PV+
Sbjct: 959 YKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVV 1003
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 382 (139.5 bits), Expect = 6.3e-34, P = 6.3e-34
Identities = 94/231 (40%), Positives = 134/231 (58%)
Query: 40 QCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF--RMN---LR-MFELVRR 93
+C +R G VI + P L ++ +G VRV T+ R+N +R M ELVR
Sbjct: 352 RCNLSGKRVDFSGRTVI-SPDPNL-MINQVGVPVRVAKILTYPERVNPANIRHMRELVRN 409
Query: 94 GNSQYPGAKYIV-RDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNRQPTLHK 151
G S +PGA Y+ R + + L + + L+CG VERH+RDGD+V+FNRQP+LHK
Sbjct: 410 GPSMHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHK 469
Query: 152 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 211
MS+M HR +V P TFR N +PYNADFDGDEMNLH+PQ+ E RAE + ++
Sbjct: 470 MSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLV 529
Query: 212 TPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLH 262
TP+N ++ QD +T +T+++VFL K E ++ + N T+H
Sbjct: 530 TPKNGEILIAATQDFITGGYLLTQKEVFLTK-EEAMQLAACFLANEDSTMH 579
Score = 316 (116.3 bits), Expect = 6.9e-27, P = 6.9e-27
Identities = 59/112 (52%), Positives = 79/112 (70%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+RDGD+V+FNRQP+LHKMS+M HR +V P TFR N +PYNADFDGDEMNL
Sbjct: 447 DVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNL 506
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 352
H+PQ+ E RAE + ++TP+N ++ QD +T +T+++VFL
Sbjct: 507 HLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFL 558
Score = 206 (77.6 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 1 MFELVRRGNSQYPGAKYIV-RDNGERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFN 58
M ELVR G S +PGA Y+ R + + L + + L+CG VERH+RDGD+V+FN
Sbjct: 403 MRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFN 462
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHKMS+M HR +V P TFR N
Sbjct: 463 RQPSLHKMSIMCHRAKVQPQRTFRFN 488
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 375 (137.1 bits), Expect = 3.8e-33, P = 3.8e-33
Identities = 81/205 (39%), Positives = 119/205 (58%)
Query: 72 RVRVLPWSTFRMNLRMFE-LVRRGNSQYPGAKYIVRDN--GERIDLRFHPKPSDLH-LQC 127
+V P R N + + LV G +PGA Y+++ N G+R +LRF + LQ
Sbjct: 396 KVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVMKQNEPGKR-NLRFGDRVKLAKTLQI 454
Query: 128 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMN 187
G VERHI DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNADFDGDEMN
Sbjct: 455 GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMN 514
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE--- 244
LHVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F D+
Sbjct: 515 LHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQ 574
Query: 245 --RHIRDGDLVIFNRQPTLHKMSMM 267
+ D D+ PT+ K M+
Sbjct: 575 LLSMMSDADIQFDIPPPTIFKPVML 599
Score = 326 (119.8 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 58/122 (47%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K+ K D VERHI DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNA
Sbjct: 447 KLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNA 506
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F
Sbjct: 507 DFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSF 566
Query: 352 LD 353
D
Sbjct: 567 FD 568
Score = 198 (74.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 3 ELVRRGNSQYPGAKYIVRDN--GERIDLRFHPKPSDLH-LQCGYKVERHIRDGDLVIFNR 59
+LV G +PGA Y+++ N G+R +LRF + LQ G VERHI DGD+V+FNR
Sbjct: 414 KLVVNGPDIHPGANYVMKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNR 472
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMN 84
QP+LH++S++ H ++ PW TFR+N
Sbjct: 473 QPSLHRLSILSHYAKIRPWRTFRLN 497
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 248 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSME 307
+ G+ +I Q + ++ H+ +T LS S + FD + P +
Sbjct: 541 KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVMLW 600
Query: 308 TRAEVENIHVTPRQ 321
T +V ++ + P +
Sbjct: 601 TGKQVFSLLIKPNK 614
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 372 (136.0 bits), Expect = 8.0e-33, P = 8.0e-33
Identities = 72/174 (41%), Positives = 111/174 (63%)
Query: 72 RVRVLPWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGE-RIDLRFHPKPS-DLHLQCG 128
+V P R N ++ EL+ G + +PGA Y+++ N + R +LR+ + +LQ G
Sbjct: 400 KVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIG 459
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNADFDGDEMNL
Sbjct: 460 DVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNL 519
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
HVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F D+
Sbjct: 520 HVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDR 573
Score = 324 (119.1 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 57/122 (46%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
K+ K D VERH+ DGD+V+FNRQP+LH++S++ H ++ PW TFR+N +PYNA
Sbjct: 451 KLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNA 510
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLHVPQ+ E RAE N+ ++TP++ P++ QD +T ++ +D F
Sbjct: 511 DFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSF 570
Query: 352 LD 353
D
Sbjct: 571 YD 572
Score = 199 (75.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFNRQ 60
EL+ G + +PGA Y+++ N + R +LR+ + +LQ G VERH+ DGD+V+FNRQ
Sbjct: 418 ELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQ 477
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LH++S++ H ++ PW TFR+N
Sbjct: 478 PSLHRLSILSHYAKIRPWRTFRLN 501
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 370 (135.3 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 71/158 (44%), Positives = 103/158 (65%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFN 144
R+ + V G ++PGA YI+ +G + L+F + L+ G VERHI DGD+++FN
Sbjct: 396 RLQKYVINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFN 455
Query: 145 RQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 204
RQP+LHK+S+M H+ RV+PW T R N +PYNADFDGDEMN+H+PQ+ E RAE +
Sbjct: 456 RQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILM 515
Query: 205 VTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ITP+N P++ QD LTA +++RD F ++
Sbjct: 516 GVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553
Score = 331 (121.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 59/113 (52%), Positives = 80/113 (70%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+++FNRQP+LHK+S+M H+ RV+PW T R N +PYNADFDGDEMN+
Sbjct: 440 DIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNI 499
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H+PQ+ E RAE + +ITP+N P++ QD LTA +++RD F +
Sbjct: 500 HLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYE 552
Score = 195 (73.7 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 5 VRRGNSQYPGAKYIVRDNGERIDLRFHPKPS-DLHLQCGYKVERHIRDGDLVIFNRQPTL 63
V G ++PGA YI+ +G + L+F + L+ G VERHI DGD+++FNRQP+L
Sbjct: 401 VINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSL 460
Query: 64 HKMSMMGHRVRVLPWSTFRMN 84
HK+S+M H+ RV+PW T R N
Sbjct: 461 HKLSIMSHKARVMPWRTLRFN 481
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 366 (133.9 bits), Expect = 3.3e-32, P = 3.3e-32
Identities = 83/213 (38%), Positives = 127/213 (59%)
Query: 41 CGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF-----RMNL-RMFELVRRG 94
CG +V+ G VI + P L ++ +G + V TF N+ +M +LV G
Sbjct: 353 CGKRVDF---SGRTVI-SPDPNL-RIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVING 407
Query: 95 NSQYPGAKYIV-RDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIFNRQPTLHK 151
+ +PGA Y+V + G + L++ K +L +L+ G +ERH+ D D+V+FNRQP+LHK
Sbjct: 408 SDVHPGANYLVEKKTGNKKLLKYG-KRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHK 466
Query: 152 MSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQII 211
+S+M HR +V+P TFR N +PYNADFDGDEMNLH+PQ+ E +AE + +I
Sbjct: 467 ISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLI 526
Query: 212 TPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
TP++ P++ +QD +T +T +D FL + E
Sbjct: 527 TPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAE 559
Score = 319 (117.4 bits), Expect = 3.4e-27, P = 3.4e-27
Identities = 70/187 (37%), Positives = 105/187 (56%)
Query: 178 NADFDGDEMNLHVPQSMETRAEV---ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
N D + +HV ++ T E+ NI + +I + P + + T +K+
Sbjct: 370 NLRIDQVGVPIHVAMTL-TFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLL 428
Query: 235 K---RDVFL------DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSC 285
K RD D +ERH+ D D+V+FNRQP+LHK+S+M HR +V+P TFR N
Sbjct: 429 KYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECA 488
Query: 286 TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKM 345
+PYNADFDGDEMNLH+PQ+ E +AE + +ITP++ P++ +QD +T +
Sbjct: 489 CTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLL 548
Query: 346 TKRDVFL 352
T +D FL
Sbjct: 549 THKDTFL 555
Score = 187 (70.9 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 39/87 (44%), Positives = 59/87 (67%)
Query: 1 MFELVRRGNSQYPGAKYIV-RDNGERIDLRFHPKPSDL--HLQCGYKVERHIRDGDLVIF 57
M +LV G+ +PGA Y+V + G + L++ K +L +L+ G +ERH+ D D+V+F
Sbjct: 400 MRQLVINGSDVHPGANYLVEKKTGNKKLLKYG-KRDELAKNLRMGDTIERHLDDNDVVLF 458
Query: 58 NRQPTLHKMSMMGHRVRVLPWSTFRMN 84
NRQP+LHK+S+M HR +V+P TFR N
Sbjct: 459 NRQPSLHKISIMSHRAKVMPGRTFRFN 485
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 361 (132.1 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 71/159 (44%), Positives = 104/159 (65%)
Query: 86 RMFELVRRGNSQYPGAKYIVRD-NGERIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIF 143
++ + VR G ++PGA YI++ N + L++ + K LQ G VERHI DGD+V+F
Sbjct: 417 KLQQCVRNGQKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLF 476
Query: 144 NRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENI 203
NRQP+LHK+S++ H +V P TFR+N +PYNADFDGDEMNLHVPQ+ E RAE +
Sbjct: 477 NRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMEL 536
Query: 204 HVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+ TP+N P++G +QD ++A ++ +D F D+
Sbjct: 537 MGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDR 575
Score = 324 (119.1 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+V+FNRQP+LHK+S++ H +V P TFR+N +PYNADFDGDEMNL
Sbjct: 462 DIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNL 521
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E RAE + + TP+N P++G +QD ++A ++ +D F D
Sbjct: 522 HVPQTEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFD 574
Score = 182 (69.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 3 ELVRRGNSQYPGAKYIVRD-NGERIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ VR G ++PGA YI++ N + L++ + K LQ G VERHI DGD+V+FNRQ
Sbjct: 420 QCVRNGQKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFNRQ 479
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S++ H +V P TFR+N
Sbjct: 480 PSLHKLSILSHFAKVRPHRTFRLN 503
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 360 (131.8 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 69/157 (43%), Positives = 101/157 (64%)
Query: 89 ELVRRGNSQYPGAKYIV-RDNGERIDLRF--HPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+ +R G +PGA Y++ R++G + LRF + +D L+ G VERH+ D D+V+FNR
Sbjct: 400 DCIRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIAD-DLKIGDIVERHLHDNDVVLFNR 458
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHK+S+M H V+V PW T R N PYNADFDGDEMNLHVPQ+ E + E +
Sbjct: 459 QPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMG 518
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
+++P+N P++ QD +TA ++ +D FLD+
Sbjct: 519 IKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555
Score = 318 (117.0 bits), Expect = 4.3e-27, P = 4.3e-27
Identities = 56/113 (49%), Positives = 76/113 (67%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERH+ D D+V+FNRQP+LHK+S+M H V+V PW T R N PYNADFDGDEMNL
Sbjct: 442 DIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNL 501
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E + E + +++P+N P++ QD +TA ++ +D FLD
Sbjct: 502 HVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLD 554
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 3 ELVRRGNSQYPGAKYIV-RDNGERIDLRF--HPKPSDLHLQCGYKVERHIRDGDLVIFNR 59
+ +R G +PGA Y++ R++G + LRF + +D L+ G VERH+ D D+V+FNR
Sbjct: 400 DCIRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIAD-DLKIGDIVERHLHDNDVVLFNR 458
Query: 60 QPTLHKMSMMGHRVRVLPWSTFRMN 84
QP+LHK+S+M H V+V PW T R N
Sbjct: 459 QPSLHKLSIMAHLVKVRPWRTLRFN 483
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 330 (121.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 66/140 (47%), Positives = 93/140 (66%)
Query: 106 RDNGE--RIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 162
R N + +I L++ K + +L G VERHI DGD+V+FNRQP+LH+MS+M H+ +++
Sbjct: 534 RKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
+ TFR N SPYNADFDGDEMNLHVPQ+ E RAE + +ITP+N ++ +
Sbjct: 594 DFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIAL 653
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
QD L+A +T +D FLD+
Sbjct: 654 TQDFLSASYIITNKDTFLDR 673
Score = 323 (118.8 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 60/113 (53%), Positives = 80/113 (70%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+V+FNRQP+LH+MS+M H+ +++ + TFR N SPYNADFDGDEMNL
Sbjct: 560 DVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNL 619
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E RAE + +ITP+N ++ + QD L+A +T +D FLD
Sbjct: 620 HVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLD 672
Score = 153 (58.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 20 RDNGE--RIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 76
R N + +I L++ K + +L G VERHI DGD+V+FNRQP+LH+MS+M H+ +++
Sbjct: 534 RKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593
Query: 77 PWSTFRMN 84
+ TFR N
Sbjct: 594 DFKTFRFN 601
Score = 57 (25.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERID 113
P + + N+ ++ L++ G +++PGA YI++ + + ID
Sbjct: 391 PETVNKYNIDKLKMLIKNGCNKWPGANYIIKKSKKGID 428
Score = 56 (24.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERID 27
L++ G +++PGA YI++ + + ID
Sbjct: 405 LIKNGCNKWPGANYIIKKSKKGID 428
Score = 46 (21.3 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 178 NADFDGDEMNLHVPQSME-TRAEVEN--IHVTPRQIITPQNNRPVMGIVQDTLTAVR-K- 232
N ++ N Q++E T +V N + I+ P+ + V D V K
Sbjct: 1375 NIQYNNISCNYIKSQNLENTHHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKN 1434
Query: 233 -MTKRDVFLDKVERHI 247
M K+ +FL+ E+++
Sbjct: 1435 LMDKKKIFLNNSEKNV 1450
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 330 (121.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 66/140 (47%), Positives = 93/140 (66%)
Query: 106 RDNGE--RIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 162
R N + +I L++ K + +L G VERHI DGD+V+FNRQP+LH+MS+M H+ +++
Sbjct: 534 RKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593
Query: 163 PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGI 222
+ TFR N SPYNADFDGDEMNLHVPQ+ E RAE + +ITP+N ++ +
Sbjct: 594 DFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIAL 653
Query: 223 VQDTLTAVRKMTKRDVFLDK 242
QD L+A +T +D FLD+
Sbjct: 654 TQDFLSASYIITNKDTFLDR 673
Score = 323 (118.8 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 60/113 (53%), Positives = 80/113 (70%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 300
D VERHI DGD+V+FNRQP+LH+MS+M H+ +++ + TFR N SPYNADFDGDEMNL
Sbjct: 560 DVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNL 619
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
HVPQ+ E RAE + +ITP+N ++ + QD L+A +T +D FLD
Sbjct: 620 HVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLD 672
Score = 153 (58.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 20 RDNGE--RIDLRFHPKPSDL-HLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVL 76
R N + +I L++ K + +L G VERHI DGD+V+FNRQP+LH+MS+M H+ +++
Sbjct: 534 RKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593
Query: 77 PWSTFRMN 84
+ TFR N
Sbjct: 594 DFKTFRFN 601
Score = 57 (25.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 77 PWSTFRMNL-RMFELVRRGNSQYPGAKYIVRDNGERID 113
P + + N+ ++ L++ G +++PGA YI++ + + ID
Sbjct: 391 PETVNKYNIDKLKMLIKNGCNKWPGANYIIKKSKKGID 428
Score = 56 (24.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERID 27
L++ G +++PGA YI++ + + ID
Sbjct: 405 LIKNGCNKWPGANYIIKKSKKGID 428
Score = 46 (21.3 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 178 NADFDGDEMNLHVPQSME-TRAEVEN--IHVTPRQIITPQNNRPVMGIVQDTLTAVR-K- 232
N ++ N Q++E T +V N + I+ P+ + V D V K
Sbjct: 1375 NIQYNNISCNYIKSQNLENTHHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKN 1434
Query: 233 -MTKRDVFLDKVERHI 247
M K+ +FL+ E+++
Sbjct: 1435 LMDKKKIFLNNSEKNV 1450
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 350 (128.3 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 75/196 (38%), Positives = 119/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ + +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRHMQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRTK 563
Score = 327 (120.2 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 169 (64.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFN 58
M +LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FN
Sbjct: 404 MRKLVRNGPEVHPGANFIQQRHMQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFN 463
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHK+S+M H RV P TFR N
Sbjct: 464 RQPSLHKLSIMAHIARVKPHRTFRFN 489
Score = 40 (19.1 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 139 DLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRA 198
+++ N H+M+ ++ + W F + L C N++ G +N+ P+ TR
Sbjct: 285 EIIFLNDVIKKHRMTGAKTQMIMEDWD-F-LQLQCALYINSELSGIPLNM-APKKW-TRG 340
Query: 199 EVENI 203
V+ +
Sbjct: 341 FVQRL 345
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 350 (128.3 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/176 (40%), Positives = 109/176 (61%)
Query: 72 RVRVLPWSTFRMNLR-MFELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCG 128
++ P + N+ M +LVR G +PGA +I + + + + L++ + + L+ G
Sbjct: 388 KILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFG 447
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNADFDGDEMNL
Sbjct: 448 DIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNL 507
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F D+ +
Sbjct: 508 HLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Score = 327 (120.2 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 170 (64.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFN 58
M +LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FN
Sbjct: 404 MRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFN 463
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHK+S+M H RV P TFR N
Sbjct: 464 RQPSLHKLSIMAHIARVKPHRTFRFN 489
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 350 (128.3 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/176 (40%), Positives = 109/176 (61%)
Query: 72 RVRVLPWSTFRMNLR-MFELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCG 128
++ P + N+ M +LVR G +PGA +I + + + + L++ + + L+ G
Sbjct: 388 KILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFG 447
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNL 188
VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNADFDGDEMNL
Sbjct: 448 DIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNL 507
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F D+ +
Sbjct: 508 HLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAK 563
Score = 327 (120.2 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 170 (64.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFN 58
M +LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FN
Sbjct: 404 MRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFN 463
Query: 59 RQPTLHKMSMMGHRVRVLPWSTFRMN 84
RQP+LHK+S+M H RV P TFR N
Sbjct: 464 RQPSLHKLSIMAHIARVKPHRTFRFN 489
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 349 (127.9 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 75/196 (38%), Positives = 118/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRAK 563
Score = 327 (120.2 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 168 (64.2 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H RV P TFR N
Sbjct: 466 PSLHKLSIMAHLARVKPHRTFRFN 489
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 348 (127.6 bits), Expect = 2.7e-30, P = 2.7e-30
Identities = 75/196 (38%), Positives = 118/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRHTQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRAK 563
Score = 327 (120.2 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 62/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 168 (64.2 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H RV P TFR N
Sbjct: 466 PSLHKLSIMAHLARVKPHRTFRFN 489
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 346 (126.9 bits), Expect = 4.4e-30, P = 4.4e-30
Identities = 74/196 (37%), Positives = 118/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRAK 563
Score = 321 (118.1 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 60/122 (49%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + + D VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR N +PYNA
Sbjct: 439 KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 165 (63.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H +V P TFR N
Sbjct: 466 PSLHKLSIMAHLAKVKPHRTFRFN 489
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 345 (126.5 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 74/196 (37%), Positives = 118/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHMQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRAK 563
Score = 324 (119.1 bits), Expect = 9.3e-28, P = 9.3e-28
Identities = 61/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + F D VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR N +PYNA
Sbjct: 439 KMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 164 (62.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H +V P TFR N
Sbjct: 466 PSLHKLSIMAHLAKVKPHRTFRFN 489
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 345 (126.5 bits), Expect = 5.6e-30, P = 5.6e-30
Identities = 74/196 (37%), Positives = 118/196 (60%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LV+ G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 AVRKMTKRDVFLDKVE 244
+T +D F D+ +
Sbjct: 548 GAYLLTLKDTFFDRAK 563
Score = 324 (119.1 bits), Expect = 9.8e-28, P = 9.8e-28
Identities = 61/122 (50%), Positives = 82/122 (67%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + + D VERH+ DGD+V+FNRQP+LHK+S+M H RV P TFR N +PYNA
Sbjct: 439 KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT +T +D F
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTF 558
Query: 352 LD 353
D
Sbjct: 559 FD 560
Score = 164 (62.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LV+ G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H RV P TFR N
Sbjct: 466 PSLHKLSIMAHLARVKPHRTFRFN 489
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 337 (123.7 bits), Expect = 4.0e-29, P = 4.0e-29
Identities = 75/199 (37%), Positives = 119/199 (59%)
Query: 56 IFNRQPTLH--KMSMMGHRVRVL--PWSTFRMNLRMF-ELVRRGNSQYPGAKYIVRDNGE 110
+ + P L ++++ H ++L P + N+ +LVR G +PGA +I + + +
Sbjct: 368 VISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQ 427
Query: 111 -RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 168
+ L++ + + L+ G VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR
Sbjct: 428 MKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFR 487
Query: 169 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 228
N +PYNADFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LT
Sbjct: 488 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLT 547
Query: 229 A---VRKMTKRDVFLDKVE 244
A +T +D F D+ +
Sbjct: 548 AFVGAYLLTLKDTFFDRAK 566
Score = 312 (114.9 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 61/125 (48%), Positives = 83/125 (66%)
Query: 232 KMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNA 291
KM + + D VERH+ DGD+V+FNRQP+LHK+S+M H +V P TFR N +PYNA
Sbjct: 439 KMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNA 498
Query: 292 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTA---VRKMTKR 348
DFDGDEMNLH+PQ+ E +AE + T ++TP+N P++ +QD LTA +T +
Sbjct: 499 DFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLK 558
Query: 349 DVFLD 353
D F D
Sbjct: 559 DTFFD 563
Score = 165 (63.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGE-RIDLRF-HPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+LVR G +PGA +I + + + + L++ + + L+ G VERH+ DGD+V+FNRQ
Sbjct: 406 KLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMN 84
P+LHK+S+M H +V P TFR N
Sbjct: 466 PSLHKLSIMAHLAKVKPHRTFRFN 489
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 292 (107.8 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 67/171 (39%), Positives = 100/171 (58%)
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
DG ++L +P ++E R + N Q++TPQ+N ++ + R +
Sbjct: 548 DGTLISL-MPLTIEQRTALAN------QLLTPQSN-----LISSPYSYSRLINTNK---- 591
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+ + + YNADFDGDEMN+
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNM 651
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
H PQS R+E + I T Q + P + P+ G++QD + +T +D F
Sbjct: 652 HFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTF 702
Score = 283 (104.7 bits), Expect = 6.2e-27, Sum P(3) = 6.2e-27
Identities = 55/116 (47%), Positives = 76/116 (65%)
Query: 130 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 188
KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+ + + YNADFDGDEMN+
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNM 651
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
H PQS R+E + I T Q + P + P+ G++QD + +T +D F + E
Sbjct: 652 HFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDE 707
Score = 139 (54.0 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 44 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
KV RH+R+GD++I NRQPTLHK SMM H+ R+LP T RM+
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMH 633
Score = 47 (21.6 bits), Expect = 6.2e-27, Sum P(3) = 6.2e-27
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDL 114
P + + N M V G ++PGA +I ++G I L
Sbjct: 518 PVTLYNFN-EMRNAVINGPHKWPGASHIQNEDGTLISL 554
Score = 43 (20.2 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDL 28
M V G ++PGA +I ++G I L
Sbjct: 527 MRNAVINGPHKWPGASHIQNEDGTLISL 554
Score = 42 (19.8 bits), Expect = 6.2e-27, Sum P(3) = 6.2e-27
Identities = 16/64 (25%), Positives = 21/64 (32%)
Query: 267 MGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 326
MG P++ +C A GD +L P S V N I TP
Sbjct: 1624 MGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFTPV 1683
Query: 327 NNRP 330
+ P
Sbjct: 1684 VDSP 1687
Score = 42 (19.8 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 16/64 (25%), Positives = 21/64 (32%)
Query: 155 MGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 214
MG P++ +C A GD +L P S V N I TP
Sbjct: 1624 MGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFTPV 1683
Query: 215 NNRP 218
+ P
Sbjct: 1684 VDSP 1687
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 315 (115.9 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 77/184 (41%), Positives = 103/184 (55%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-----------HL 125
P ++F N ++ + V G QYPGA +I +NG I+L + + H
Sbjct: 476 PVTSFNYN-QLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHA 534
Query: 126 QCGY--KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS--TFRMNLSCTSPYNADF 181
G KV RH+ GD V+ NRQPTLHK +MGHRV+VL + T RM+ S S YNADF
Sbjct: 535 PRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADF 594
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-TLTAVRKMTKRDVFL 240
DGDEMN+H PQS+ AE+ I Q + P+N P+ G++QD LT V +TKRD
Sbjct: 595 DGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVL-LTKRDTLF 653
Query: 241 DKVE 244
K +
Sbjct: 654 TKAD 657
Score = 278 (102.9 bits), Expect = 9.5e-23, P = 9.5e-23
Identities = 59/111 (53%), Positives = 74/111 (66%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS--TFRMNLSCTSPYNADFDGDEMN 299
KV RH+ GD V+ NRQPTLHK +MGHRV+VL + T RM+ S S YNADFDGDEMN
Sbjct: 541 KVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMN 600
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD-TLTAVRKMTKRD 349
+H PQS+ AE+ I Q + P+N P+ G++QD LT V +TKRD
Sbjct: 601 IHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVL-LTKRD 650
Score = 140 (54.3 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 39/97 (40%), Positives = 51/97 (52%)
Query: 3 ELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDL-----------HLQCGY--KVERHI 49
+ V G QYPGA +I +NG I+L + + H G KV RH+
Sbjct: 487 QAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHL 546
Query: 50 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWS--TFRMN 84
GD V+ NRQPTLHK +MGHRV+VL + T RM+
Sbjct: 547 LSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMH 583
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 314 (115.6 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 60/116 (51%), Positives = 81/116 (69%)
Query: 128 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEM 186
G KV RHI++ D+VI NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEM
Sbjct: 556 GKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 615
Query: 187 NLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
N+H PQ+ RAE N+ T Q +TP + P+ G++QD ++A +T +D F ++
Sbjct: 616 NMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNR 671
Score = 308 (113.5 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 59/113 (52%), Positives = 79/113 (69%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNL 300
KV RHI++ D+VI NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEMN+
Sbjct: 558 KVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNM 617
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
H PQ+ RAE N+ T Q +TP + P+ G++QD ++A +T +D F +
Sbjct: 618 HFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFN 670
Score = 146 (56.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 42 GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
G KV RHI++ D+VI NRQPTLHK SMMGH+VRVLP T R++
Sbjct: 556 GKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLH 599
Score = 41 (19.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLT-AVRKMTKRDV---FLDKV 243
E I I TPQ P++ V D A K R V F+DKV
Sbjct: 1213 EIIMTASASIKTPQMTLPILADVNDEQADAFCKSVARVVMSEFVDKV 1259
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 306 (112.8 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 62/125 (49%), Positives = 81/125 (64%)
Query: 119 KPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPY 177
K D++ + G V RH+RDGD+V+ NRQPTLHK S+M H+VRVL T R++ + S Y
Sbjct: 541 KTCDINFE-GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTY 599
Query: 178 NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 237
NADFDGDEMN+H PQ +RAE NI Q P N P+ ++QD + + +TKRD
Sbjct: 600 NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRD 659
Query: 238 VFLDK 242
FLDK
Sbjct: 660 TFLDK 664
Score = 293 (108.2 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 58/112 (51%), Positives = 74/112 (66%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLH 301
V RH+RDGD+V+ NRQPTLHK S+M H+VRVL T R++ + S YNADFDGDEMN+H
Sbjct: 552 VHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVH 611
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQ +RAE NI Q P N P+ ++QD + + +TKRD FLD
Sbjct: 612 FPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLD 663
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 33 KPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
K D++ + G V RH+RDGD+V+ NRQPTLHK S+M H+VRVL T R++
Sbjct: 541 KTCDINFE-GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLH 592
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 306 (112.8 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 73/179 (40%), Positives = 101/179 (56%)
Query: 84 NLR-MFELVRRGNSQYPGAKYIVRDNGERIDLR--FHPKPSDLHLQC------------G 128
N R M + V G ++PGA I +NG+ ++LR + S L Q
Sbjct: 531 NFRDMQQAVINGPDKWPGAAAIENENGQIVNLRNKSQEERSSLANQLLAPTSNNSGNMRN 590
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMN 187
KV RHI +GD+V+ NRQPTLHK S+MGHRVRVLP T RM+ + + YNADFDGDEMN
Sbjct: 591 KKVHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMN 650
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERH 246
+H PQ+ R E + T Q I+ +P+ G++QD L+ + +D +LD+ H
Sbjct: 651 MHFPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYH 709
Score = 290 (107.1 bits), Expect = 5.5e-24, P = 5.5e-24
Identities = 70/191 (36%), Positives = 105/191 (54%)
Query: 167 FRMNLSCTSPYNA-DF-DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQN-NRPVMGIV 223
F L+ P + +F D + ++ P A +EN + QI+ +N ++ +
Sbjct: 517 FARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAIENEN---GQIVNLRNKSQEERSSL 573
Query: 224 QDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 282
+ L A ++ KV RHI +GD+V+ NRQPTLHK S+MGHRVRVLP T RM+
Sbjct: 574 ANQLLAPTSNNSGNMRNKKVHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMH 633
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
+ + YNADFDGDEMN+H PQ+ R E + T Q I+ +P+ G++QD L+
Sbjct: 634 YANCNTYNADFDGDEMNMHFPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVS 693
Query: 343 RKMTKRDVFLD 353
+ +D +LD
Sbjct: 694 VALCNKDTYLD 704
Score = 158 (60.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 43/99 (43%), Positives = 56/99 (56%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLR--FHPKPSDLHLQC------------GYKVE 46
M + V G ++PGA I +NG+ ++LR + S L Q KV
Sbjct: 535 MQQAVINGPDKWPGAAAIENENGQIVNLRNKSQEERSSLANQLLAPTSNNSGNMRNKKVH 594
Query: 47 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
RHI +GD+V+ NRQPTLHK S+MGHRVRVLP T RM+
Sbjct: 595 RHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMH 633
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 303 (111.7 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 59/114 (51%), Positives = 79/114 (69%)
Query: 130 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP-WSTFRMNLSCTSPYNADFDGDEMNL 188
KV RHI++ D+V+ NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEMN+
Sbjct: 576 KVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNM 635
Query: 189 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDK 242
H PQ+ RAE N+ T Q +TP + PV G++QD ++A +T +D F +
Sbjct: 636 HFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTR 689
Score = 302 (111.4 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 59/111 (53%), Positives = 78/111 (70%)
Query: 242 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP-WSTFRMNLSCTSPYNADFDGDEMNL 300
KV RHI++ D+V+ NRQPTLHK SMMGH+VRVLP T R++ + T YNADFDGDEMN+
Sbjct: 576 KVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNM 635
Query: 301 HVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
H PQ+ RAE N+ T Q +TP + PV G++QD ++A +T +D F
Sbjct: 636 HFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSF 686
Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 44 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP-WSTFRMN 84
KV RHI++ D+V+ NRQPTLHK SMMGH+VRVLP T R++
Sbjct: 576 KVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLH 617
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 281 (104.0 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 77 PWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY------- 129
P + F +N M L+R+G Q+PGA + V +G++ L P+ +Q
Sbjct: 510 PVNAFNVN-EMKGLLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATT 568
Query: 130 -------KVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADF 181
KV RH+++GD+++ NRQP+LHK S++GHR RVL RMN + YNADF
Sbjct: 569 ENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADF 628
Query: 182 DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
DGDEMN H+ QS + EV I + P++ P++G++QD + + ++ RD FL+
Sbjct: 629 DGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLN 688
Query: 242 K 242
K
Sbjct: 689 K 689
Score = 258 (95.9 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 69/193 (35%), Positives = 101/193 (52%)
Query: 167 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIIT-----PQNNRPVMG 221
F L+ T P NA F+ +EM + Q N V P T P+ + M
Sbjct: 501 FAKKLTFTEPVNA-FNVNEMKGLLRQGPHQHPGA-NFFVEPSGKKTMLGDKPEEKKRRMQ 558
Query: 222 IVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFR 280
+ + TL A R KV RH+++GD+++ NRQP+LHK S++GHR RVL R
Sbjct: 559 MAK-TLNAATTENLRQT--PKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALR 615
Query: 281 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 340
MN + YNADFDGDEMN H+ QS + EV I + P++ P++G++QD +
Sbjct: 616 MNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVV 675
Query: 341 AVRKMTKRDVFLD 353
+ ++ RD FL+
Sbjct: 676 SGVLLSVRDRFLN 688
Score = 144 (55.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 4 LVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGY--------------KVERHI 49
L+R+G Q+PGA + V +G++ L P+ +Q KV RH+
Sbjct: 522 LLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHM 581
Query: 50 RDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
++GD+++ NRQP+LHK S++GHR RVL RMN
Sbjct: 582 KNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMN 617
Score = 47 (21.6 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 4 LVRRGNSQYPGAKYIV-RDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL-------V 55
L+ +G++ + I R G+ I+ + H L L+ ++ + GD
Sbjct: 399 LIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQ 458
Query: 56 IFNRQPTLHKMSMMGHRV 73
I ++ L +M MMG RV
Sbjct: 459 ILEKKQGLFRMHMMGKRV 476
Score = 47 (21.6 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 90 LVRRGNSQYPGAKYIV-RDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDL-------V 141
L+ +G++ + I R G+ I+ + H L L+ ++ + GD
Sbjct: 399 LIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQ 458
Query: 142 IFNRQPTLHKMSMMGHRV 159
I ++ L +M MMG RV
Sbjct: 459 ILEKKQGLFRMHMMGKRV 476
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 272 (100.8 bits), Expect = 4.5e-22, P = 4.5e-22
Identities = 66/188 (35%), Positives = 99/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERI-----DLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R DL
Sbjct: 472 VTPWNV--QELR--QAVINGPNMHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPAT 527
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR RVLP R++ +
Sbjct: 528 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANC 582
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 583 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 642
Query: 235 KRDVFLDK 242
R F ++
Sbjct: 643 IRGCFFNR 650
Score = 255 (94.8 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 48/110 (43%), Positives = 71/110 (64%)
Query: 245 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVP 303
RH+++GD+++ NRQPTLH+ S+ HR RVLP R++ + YNADFDGDEMN H P
Sbjct: 540 RHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFP 599
Query: 304 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
QS RAE + T +Q + P++ +P+ G++QD + + MT R F +
Sbjct: 600 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFN 649
Score = 122 (48.0 bits), Expect = 0.00076, P = 0.00076
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 32 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
PKP + C RH+++GD+++ NRQPTLH+ S+ HR RVLP
Sbjct: 530 PKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARVLP 570
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 271 (100.5 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 64/188 (34%), Positives = 99/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R +D+
Sbjct: 472 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPAT 527
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 528 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 582
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 583 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMT 642
Query: 235 KRDVFLDK 242
R F +
Sbjct: 643 TRGCFFTR 650
Score = 255 (94.8 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 245 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVP 303
RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN H P
Sbjct: 540 RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 599
Query: 304 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
QS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 600 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCF 647
Score = 121 (47.7 bits), Expect = 0.00094, P = 0.00094
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 32 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP
Sbjct: 530 PKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILP 570
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 271 (100.5 bits), Expect = 5.7e-22, P = 5.7e-22
Identities = 64/188 (34%), Positives = 99/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R +D+
Sbjct: 472 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPAT 527
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 528 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 582
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 583 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMT 642
Query: 235 KRDVFLDK 242
R F +
Sbjct: 643 TRGCFFTR 650
Score = 255 (94.8 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 245 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVP 303
RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN H P
Sbjct: 540 RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 599
Query: 304 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
QS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 600 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCF 647
Score = 121 (47.7 bits), Expect = 0.00097, P = 0.00097
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 32 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP
Sbjct: 530 PKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILP 570
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 267 (99.0 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 68/184 (36%), Positives = 100/184 (54%)
Query: 69 MGHRVRVLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNG--ERIDLRFHPKPSDL--- 123
+ + V V W+ LR ++V G +PGA YI NG I K L
Sbjct: 448 LSYPVPVTEWNV--TELR--KMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKL 503
Query: 124 ---HLQCGYK-VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYN 178
+ + G K V RH+ +GD+++ NRQP+LHK S+MGH+ R+L TFR++ S YN
Sbjct: 504 LLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYN 563
Query: 179 ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 238
ADFDGDEMN H PQS RAE N+ + P++ P+ G++QD + + K++ R
Sbjct: 564 ADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGR 623
Query: 239 FLDK 242
F ++
Sbjct: 624 FFNR 627
Score = 251 (93.4 bits), Expect = 8.7e-19, P = 8.7e-19
Identities = 49/112 (43%), Positives = 72/112 (64%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLH 301
V RH+ +GD+++ NRQP+LHK S+MGH+ R+L TFR++ S YNADFDGDEMN H
Sbjct: 515 VHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAH 574
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS RAE N+ + P++ P+ G++QD + + K++ R F +
Sbjct: 575 YPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 3 ELVRRGNSQYPGAKYIVRDNG--ERIDLRFHPKPSDL------HLQCGYK-VERHIRDGD 53
++V G +PGA YI NG I K L + + G K V RH+ +GD
Sbjct: 464 KMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGD 523
Query: 54 LVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMN 84
+++ NRQP+LHK S+MGH+ R+L TFR++
Sbjct: 524 VLLLNRQPSLHKPSIMGHKARILHGEKTFRLH 555
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 267 (99.0 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 64/182 (35%), Positives = 97/182 (53%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPK------------PSD 122
V PW+ M + V G + +PGA +V ++G R L + PS
Sbjct: 478 VTPWNVKEMR----QAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPST 533
Query: 123 LHLQCGYK-VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNAD 180
+ K V RHI++GD+++ NRQPTLH+ S+ H R+LP R++ + YNAD
Sbjct: 534 GQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNAD 593
Query: 181 FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFL 240
FDGDEMN H PQS +RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 594 FDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFF 653
Query: 241 DK 242
+
Sbjct: 654 TR 655
Score = 262 (97.3 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 57/158 (36%), Positives = 89/158 (56%)
Query: 202 NIHVTPRQIITPQNNRPVMGIVQDTLT-AVRK--MT----KRDVFLDKVERHIRDGDLVI 254
NIH ++ +R ++ T AV K +T + + + V RHI++GD+++
Sbjct: 495 NIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLL 554
Query: 255 FNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVE 313
NRQPTLH+ S+ H R+LP R++ + YNADFDGDEMN H PQS +RAE
Sbjct: 555 LNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAY 614
Query: 314 NIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
+ T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 615 TLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCF 652
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 267 (99.0 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 65/188 (34%), Positives = 98/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R IDL
Sbjct: 472 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTPAT 527
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ H R+LP R++ +
Sbjct: 528 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANC 582
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 583 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 642
Query: 235 KRDVFLDK 242
R F +
Sbjct: 643 IRGCFFTR 650
Score = 249 (92.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 62/192 (32%), Positives = 97/192 (50%)
Query: 161 VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVM 220
V PW+ + + + N G M ++ S R + I +T R+ + Q P
Sbjct: 472 VTPWNVQELRQAVINGPNVH-PGASMVINEDGS---RTALSAIDLTQREAVAKQLLTPAT 527
Query: 221 GIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TF 279
G + T + V RH+++GD+++ NRQPTLH+ S+ H R+LP
Sbjct: 528 GAPKPQGTKI------------VCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVL 575
Query: 280 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
R++ + YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD +
Sbjct: 576 RLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHM 635
Query: 340 TAVRKMTKRDVF 351
+ MT R F
Sbjct: 636 VSGANMTIRGCF 647
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 267 (99.0 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 65/188 (34%), Positives = 98/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGERI-----DLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R DL
Sbjct: 476 VTPWNV--QELR--QAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPAT 531
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 532 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 586
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 587 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 646
Query: 235 KRDVFLDK 242
R F +
Sbjct: 647 IRGCFFTR 654
Score = 253 (94.1 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 245 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVP 303
RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN H P
Sbjct: 544 RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 603
Query: 304 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
QS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 604 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 651
Score = 121 (47.7 bits), Expect = 0.00098, P = 0.00098
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 32 PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLP 77
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP
Sbjct: 534 PKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILP 574
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 267 (99.0 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 65/188 (34%), Positives = 98/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R IDL
Sbjct: 484 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTPAT 539
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ H R+LP R++ +
Sbjct: 540 GAPKPQGTKIVC-----RHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANC 594
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 595 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 654
Query: 235 KRDVFLDK 242
R F +
Sbjct: 655 IRGCFFTR 662
Score = 249 (92.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 62/192 (32%), Positives = 97/192 (50%)
Query: 161 VLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVM 220
V PW+ + + + N G M ++ S R + I +T R+ + Q P
Sbjct: 484 VTPWNVQELRQAVINGPNVH-PGASMVINEDGS---RTALSAIDLTQREAVAKQLLTPAT 539
Query: 221 GIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TF 279
G + T + V RH+++GD+++ NRQPTLH+ S+ H R+LP
Sbjct: 540 GAPKPQGTKI------------VCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVL 587
Query: 280 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
R++ + YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD +
Sbjct: 588 RLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHM 647
Query: 340 TAVRKMTKRDVF 351
+ MT R F
Sbjct: 648 VSGANMTIRGCF 659
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 265 (98.3 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 64/188 (34%), Positives = 98/188 (52%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFH------------ 117
V PW+ LR + V G + +PGA ++ ++G R +D
Sbjct: 479 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPAT 534
Query: 118 --PKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCT 174
PKP + C RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ +
Sbjct: 535 GAPKPQGTKVVC-----RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANC 589
Query: 175 SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
YNADFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT
Sbjct: 590 KAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMT 649
Query: 235 KRDVFLDK 242
R F +
Sbjct: 650 IRGCFFTR 657
Score = 253 (94.1 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 245 RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVP 303
RH+++GD+++ NRQPTLH+ S+ HR R+LP R++ + YNADFDGDEMN H P
Sbjct: 547 RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 606
Query: 304 QSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
QS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 607 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 654
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 262 (97.3 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFHPK-------PSD 122
V PW+ LR + V G + +PGA ++ ++G R +D PS
Sbjct: 500 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPST 555
Query: 123 -LHLQCGYKVE-RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNA 179
+ G KV RH+++GD+++ NRQPTLH+ S+ HR +LP R++ + YNA
Sbjct: 556 GIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNA 615
Query: 180 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 239
DFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 616 DFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 675
Query: 240 LDK 242
+
Sbjct: 676 FTR 678
Score = 251 (93.4 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 202 NIHVTPRQIITPQNNRPVMGIVQDTLT-AVRK-MTKRDVFLDKVE------RHIRDGDLV 253
N+H +I +R + V T AV K + + K + RH+++GD++
Sbjct: 517 NVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDIL 576
Query: 254 IFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 312
+ NRQPTLH+ S+ HR +LP R++ + YNADFDGDEMN H PQS RAE
Sbjct: 577 LLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEA 636
Query: 313 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
+ T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 637 YVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 675
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 262 (97.3 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFHPK-------PSD 122
V PW+ LR + V G + +PGA ++ ++G R +D PS
Sbjct: 479 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPST 534
Query: 123 -LHLQCGYKVE-RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNA 179
+ G KV RH+++GD+++ NRQPTLH+ S+ HR +LP R++ + YNA
Sbjct: 535 GIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNA 594
Query: 180 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 239
DFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 595 DFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 654
Query: 240 LDK 242
+
Sbjct: 655 FTR 657
Score = 251 (93.4 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 202 NIHVTPRQIITPQNNRPVMGIVQDTLT-AVRK-MTKRDVFLDKVE------RHIRDGDLV 253
N+H +I +R + V T AV K + + K + RH+++GD++
Sbjct: 496 NVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDIL 555
Query: 254 IFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 312
+ NRQPTLH+ S+ HR +LP R++ + YNADFDGDEMN H PQS RAE
Sbjct: 556 LLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEA 615
Query: 313 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
+ T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 616 YVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 654
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 262 (97.3 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 75 VLPWSTFRMNLRMFELVRRGNSQYPGAKYIVRDNGER-----IDLRFHPK-------PSD 122
V PW+ LR + V G + +PGA ++ ++G R +D PS
Sbjct: 479 VTPWNV--QELR--QAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPST 534
Query: 123 -LHLQCGYKVE-RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNA 179
+ G KV RH+++GD+++ NRQPTLH+ S+ HR +LP R++ + YNA
Sbjct: 535 GIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNA 594
Query: 180 DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 239
DFDGDEMN H PQS RAE + T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 595 DFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 654
Query: 240 LDK 242
+
Sbjct: 655 FTR 657
Score = 251 (93.4 bits), Expect = 9.2e-19, P = 9.2e-19
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 202 NIHVTPRQIITPQNNRPVMGIVQDTLT-AVRK-MTKRDVFLDKVE------RHIRDGDLV 253
N+H +I +R + V T AV K + + K + RH+++GD++
Sbjct: 496 NVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDIL 555
Query: 254 IFNRQPTLHKMSMMGHRVRVLPWS-TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 312
+ NRQPTLH+ S+ HR +LP R++ + YNADFDGDEMN H PQS RAE
Sbjct: 556 LLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEA 615
Query: 313 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVF 351
+ T +Q + P++ +P+ G++QD + + MT R F
Sbjct: 616 YVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCF 654
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 220 (82.5 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 43/122 (35%), Positives = 77/122 (63%)
Query: 125 LQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW-STFRMNLSCTSPYNADFDG 183
LQ G K+ R + DGD V+ NR P++H+ S++ VR+LP S +N C P+ DFDG
Sbjct: 391 LQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDG 450
Query: 184 DEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT-KRDVFLDK 242
D ++ +VPQS++ + E++ + +Q+I QN R ++ + QD+LTA + +++ +L++
Sbjct: 451 DCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNR 510
Query: 243 VE 244
+
Sbjct: 511 AQ 512
Score = 212 (79.7 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 40/102 (39%), Positives = 66/102 (64%)
Query: 241 DKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW-STFRMNLSCTSPYNADFDGDEMN 299
DK+ R + DGD V+ NR P++H+ S++ VR+LP S +N C P+ DFDGD ++
Sbjct: 395 DKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLH 454
Query: 300 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTA 341
+VPQS++ + E++ + +Q+I QN R ++ + QD+LTA
Sbjct: 455 GYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTA 496
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 218 (81.8 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 61/175 (34%), Positives = 92/175 (52%)
Query: 125 LQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDG 183
L+ G V R + DGD+V NR PT HK S+ RV V +T ++N L C SP +ADFDG
Sbjct: 394 LKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMC-SPLSADFDG 452
Query: 184 DEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKV 243
D ++L PQS+ +AEV + +Q+++ + ++ + D+L ++R M +R VFLDK
Sbjct: 453 DCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLER-VFLDKA 511
Query: 244 --ERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGD 296
++ G L + P L K S G W+ F++ L P GD
Sbjct: 512 TAQQLAMYGSLSL--PPPALRKSSKSGPA-----WTVFQI-LQLAFPERLSCKGD 558
Score = 200 (75.5 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 45/112 (40%), Positives = 69/112 (61%)
Query: 243 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLH 301
V R + DGD+V NR PT HK S+ RV V +T ++N L C SP +ADFDGD ++L
Sbjct: 400 VHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMC-SPLSADFDGDCVHLF 458
Query: 302 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 353
PQS+ +AEV + +Q+++ + ++ + D+L ++R M +R VFLD
Sbjct: 459 YPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLER-VFLD 509
Score = 40 (19.1 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 319 PRQIITPQNNRPVMGI 334
P+ I P+NN P +
Sbjct: 1399 PKDSIVPENNEPTSDV 1414
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 40/125 (32%), Positives = 72/125 (57%)
Query: 226 TLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +KM +R+ V D ++ IR+ V+ NR PTLH++ + ++ +++
Sbjct: 393 TIKAAKKMVEREEAVVWDILDEVIREHP-VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L C + YNADFDGD+M +HVP ++E + E + ++ I++P N P++ QD + +
Sbjct: 452 LVCAA-YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510
Query: 343 RKMTK 347
MT+
Sbjct: 511 YYMTR 515
Score = 163 (62.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/111 (32%), Positives = 61/111 (54%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L C + YNADFDGD+M +HVP ++E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA-YNADFDGDQMAVHVPLTLEAQLE 479
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDG 250
+ ++ I++P N P++ QD + + MT RD K E + G
Sbjct: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTG 529
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 180 (68.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/128 (30%), Positives = 73/128 (57%)
Query: 226 TLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +KM +R+ V D ++ IR+ V+ NR PTLH++ + ++ +++
Sbjct: 393 TIKAAKKMVEREEAVVWDILDEVIREHP-VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L C + YNADFDGD+M +HVP ++E + E + ++ I++P + P++ QD + +
Sbjct: 452 LVCAA-YNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGL 510
Query: 343 RKMTKRDV 350
MT+ +
Sbjct: 511 YYMTREKI 518
Score = 158 (60.7 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 30/99 (30%), Positives = 57/99 (57%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L C + YNADFDGD+M +HVP ++E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA-YNADFDGDQMAVHVPLTLEAQLE 479
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 238
+ ++ I++P + P++ QD + + MT+ +
Sbjct: 480 ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKI 518
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 180 (68.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/128 (30%), Positives = 73/128 (57%)
Query: 226 TLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +KM +R+ V D ++ IR+ V+ NR PTLH++ + ++ +++
Sbjct: 393 TIKAAKKMVEREEAVVWDILDEVIREHP-VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L C + YNADFDGD+M +HVP ++E + E + ++ I++P + P++ QD + +
Sbjct: 452 LVCAA-YNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGL 510
Query: 343 RKMTKRDV 350
MT+ +
Sbjct: 511 YYMTREKI 518
Score = 158 (60.7 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 30/99 (30%), Positives = 57/99 (57%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L C + YNADFDGD+M +HVP ++E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA-YNADFDGDQMAVHVPLTLEAQLE 479
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDV 238
+ ++ I++P + P++ QD + + MT+ +
Sbjct: 480 ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKI 518
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 177 (67.4 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 39/117 (33%), Positives = 68/117 (58%)
Query: 226 TLTAVRKMTKRDV--FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +KM +R+V D ++ IR+ V+ NR PTLH++ + ++ +++
Sbjct: 393 TIKAAKKMVEREVAEVWDVLDEVIREHP-VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
L C + YNADFDGD+M +HVP ++E + E + ++ I++P N PV+ QD +
Sbjct: 452 LVCAA-YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPVITPSQDVV 507
Score = 154 (59.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L C + YNADFDGD+M +HVP ++E + E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA-YNADFDGDQMAVHVPLTLEAQLE 479
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTL 227
+ ++ I++P N PV+ QD +
Sbjct: 480 ARALMMSTNNILSPANGEPVITPSQDVV 507
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 174 (66.3 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 40/119 (33%), Positives = 69/119 (57%)
Query: 221 GIVQDTLTAVRKMTK-RDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF 279
G+ + +A RK+ + + D +E I++ V+ NR PTLH++ + ++
Sbjct: 378 GLAHNIKSAKRKIERVQPEVWDVLESVIKEHP-VLLNRAPTLHRLGIQAFEPTLVEGRAI 436
Query: 280 RMN-LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD 337
R++ L CT+ YNADFDGD+M +HVP S E +AE + + + I+ P++ +PV+ QD
Sbjct: 437 RLHPLVCTA-YNADFDGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQD 494
Score = 165 (63.1 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ R++ L CT+ YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTA-YNADFDGDQMAVHVPLSAEAQAE 468
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQD 225
+ + + I+ P++ +PV+ QD
Sbjct: 469 ARILMLAAQNILNPKDGKPVVTPSQD 494
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 174 (66.3 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 40/119 (33%), Positives = 69/119 (57%)
Query: 221 GIVQDTLTAVRKMTK-RDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF 279
G+ + +A RK+ + + D +E I++ V+ NR PTLH++ + ++
Sbjct: 378 GLAHNIKSAKRKIERVQPEVWDVLESVIKEHP-VLLNRAPTLHRLGIQAFEPTLVEGRAI 436
Query: 280 RMN-LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD 337
R++ L CT+ YNADFDGD+M +HVP S E +AE + + + I+ P++ +PV+ QD
Sbjct: 437 RLHPLVCTA-YNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNILNPKDGKPVVTPSQD 494
Score = 165 (63.1 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ R++ L CT+ YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTA-YNADFDGDQMAVHVPLSSEAQAE 468
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQD 225
+ + + I+ P++ +PV+ QD
Sbjct: 469 ARLLMLAAQNILNPKDGKPVVTPSQD 494
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 169 (64.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 36/125 (28%), Positives = 69/125 (55%)
Query: 226 TLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +K+ +R+ D ++ IR+ V+ NR PTLH++ + ++ ++
Sbjct: 393 TIKAAKKLVEREGAEVWDVLDEVIREHP-VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L C + YNADFDGD+M +HVP ++E + E + ++ ++ P N P++ QD + +
Sbjct: 452 LVCAA-YNADFDGDQMAVHVPLTIEAQMEARTLMMSTNNVLAPANGEPIIVPSQDVVLGL 510
Query: 343 RKMTK 347
+T+
Sbjct: 511 YYLTR 515
Score = 155 (59.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/96 (30%), Positives = 54/96 (56%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ ++ L C + YNADFDGD+M +HVP ++E + E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAA-YNADFDGDQMAVHVPLTIEAQME 479
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 235
+ ++ ++ P N P++ QD + + +T+
Sbjct: 480 ARTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 246 HIRDGDLVIFNRQPTLHKMSMMG 268
+I + +L +QP ++M MMG
Sbjct: 1285 NISNRELEAEGKQPAEYEMQMMG 1307
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 169 (64.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 36/125 (28%), Positives = 72/125 (57%)
Query: 226 TLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ A +K+ + + D +E IR+ +++ NR PTLH++ + ++ +++
Sbjct: 393 TVKAAKKLVENEGPEVWDILEEVIREHPILL-NRAPTLHRLGIQAFEPVLVEGKAIQLHP 451
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L CT+ YNADFDGD+M +HVP ++E + E ++ ++ ++ P N P++ QD + +
Sbjct: 452 LVCTA-YNADFDGDQMAVHVPLTLEAQLEARSLMMSTNNVLHPANGEPIIVPSQDVVLGL 510
Query: 343 RKMTK 347
+T+
Sbjct: 511 YYITR 515
Score = 161 (61.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 32/106 (30%), Positives = 63/106 (59%)
Query: 131 VERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLH 189
+E IR+ +++ NR PTLH++ + ++ +++ L CT+ YNADFDGD+M +H
Sbjct: 412 LEEVIREHPILL-NRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTA-YNADFDGDQMAVH 469
Query: 190 VPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTK 235
VP ++E + E ++ ++ ++ P N P++ QD + + +T+
Sbjct: 470 VPLTLEAQLEARSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITR 515
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 168 (64.2 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 41/120 (34%), Positives = 70/120 (58%)
Query: 221 GIVQDTLTAVRKM--TKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWST 278
GI + +A R + K +V+ D +E I++ V+ NR PTLH++ + ++
Sbjct: 378 GIAHNIKSAKRMVERVKPEVW-DVLEEVIKEHP-VLLNRAPTLHRLGIQAFEPVLVEGRA 435
Query: 279 FRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD 337
+++ L CT+ YNADFDGD+M +HVP S E +AE + ++ I+ P++ +PV+ QD
Sbjct: 436 IQIHPLVCTA-YNADFDGDQMAVHVPLSAEAQAEARLLMLSSHNILNPKDGKPVVVPTQD 494
Score = 159 (61.0 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L CT+ YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTA-YNADFDGDQMAVHVPLSAEAQAE 468
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQD 225
+ ++ I+ P++ +PV+ QD
Sbjct: 469 ARLLMLSSHNILNPKDGKPVVVPTQD 494
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 163 (62.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 223 VQDTLTAVRKMTKRDV--FLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 280
+ T+ R+M + + D + + I V NR PTLH++S+ ++ +
Sbjct: 391 IAPTIKTARRMVQNEQPEVWDVLAKVIHQHP-VFLNRAPTLHRLSVQAFEPVLIEGKAIQ 449
Query: 281 MN-LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
++ L CT+ +NADFDGD+M++HVP S+E + E + ++ ++ P N+RP++ +D +
Sbjct: 450 LHPLVCTA-FNADFDGDQMSVHVPLSIEAQVEARLLVMSTNNVLNPANSRPIIVPSKDIV 508
Query: 340 TAV 342
V
Sbjct: 509 LGV 511
Score = 162 (62.1 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V NR PTLH++S+ ++ +++ L CT+ +NADFDGD+M++HVP S+E + E
Sbjct: 422 VFLNRAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTA-FNADFDGDQMSVHVPLSIEAQVE 480
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAV 230
+ ++ ++ P N+RP++ +D + V
Sbjct: 481 ARLLVMSTNNVLNPANSRPIIVPSKDIVLGV 511
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 161 (61.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 36/127 (28%), Positives = 69/127 (54%)
Query: 223 VQDTLTAVRKMT---KRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF 279
+ T+ KM K DV+ D ++ I++ +++ NR PTLH++ + ++
Sbjct: 391 IAPTVKLANKMIQSEKPDVW-DVLDEVIKEHPILL-NRAPTLHRLGLQAFDPVLIEGKAI 448
Query: 280 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
+++ S +NADFDGD+M +HVP S E + E + ++ I++P N RP++ +D +
Sbjct: 449 QLHPLVCSAFNADFDGDQMAVHVPLSQEAQLEARVLMMSTNNILSPSNGRPIIVPSKDIV 508
Query: 340 TAVRKMT 346
+ +T
Sbjct: 509 LGIYYLT 515
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/94 (29%), Positives = 53/94 (56%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
++ NR PTLH++ + ++ +++ S +NADFDGD+M +HVP S E + E
Sbjct: 422 ILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLEA 481
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+ ++ I++P N RP++ +D + + +T
Sbjct: 482 RVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/119 (28%), Positives = 66/119 (55%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTS 287
A RK+ +++ + ++ + + G V+ NR PTLH++ + + ++ T ++ L C
Sbjct: 426 AKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG 485
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+NADFDGD+M +H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 486 -FNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMN 187
+++ + + G V+ NR PTLH++ + + ++ T ++ L C +NADFDGD+M
Sbjct: 438 WEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG-FNADFDGDQMA 496
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 497 VHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/119 (28%), Positives = 66/119 (55%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTS 287
A RK+ +++ + ++ + + G V+ NR PTLH++ + + ++ T ++ L C
Sbjct: 426 AKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG 485
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+NADFDGD+M +H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 486 -FNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMN 187
+++ + + G V+ NR PTLH++ + + ++ T ++ L C +NADFDGD+M
Sbjct: 438 WEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG-FNADFDGDQMA 496
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 497 VHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/119 (28%), Positives = 66/119 (55%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTS 287
A RK+ +++ + ++ + + G V+ NR PTLH++ + + ++ T ++ L C
Sbjct: 426 AKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG 485
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+NADFDGD+M +H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 486 -FNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMN 187
+++ + + G V+ NR PTLH++ + + ++ T ++ L C +NADFDGD+M
Sbjct: 438 WEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG-FNADFDGDQMA 496
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 497 VHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 156 (60.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/119 (28%), Positives = 66/119 (55%)
Query: 229 AVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTS 287
A RK+ +++ + ++ + + G V+ NR PTLH++ + + ++ T ++ L C
Sbjct: 426 AKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG 485
Query: 288 PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 346
+NADFDGD+M +H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 486 -FNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 129 YKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMN 187
+++ + + G V+ NR PTLH++ + + ++ T ++ L C +NADFDGD+M
Sbjct: 438 WEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKG-FNADFDGDQMA 496
Query: 188 LHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+H+P S+E +AE + + +++P P+ QD L + +T
Sbjct: 497 VHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 543
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 159 (61.0 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 37/132 (28%), Positives = 73/132 (55%)
Query: 221 GIVQDTLTAVRKMT---KRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWS 277
GIV T+ KM K +V+ D ++ I + +++ NR PTLH++ + ++
Sbjct: 390 GIVP-TVKLANKMIQNEKPEVW-DILDEVIHEHPILL-NRAPTLHRLGIQAFDPVLIEGK 446
Query: 278 TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQD 337
+++ S +NADFDGD+M +H+P S+E + E + ++ I++P N +P++ +D
Sbjct: 447 AIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLEARILMMSTNNILSPSNGKPIIVPSKD 506
Query: 338 TLTAVRKMTKRD 349
+ + +T +D
Sbjct: 507 IVLGIYYLTLQD 518
Score = 157 (60.3 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 27/97 (27%), Positives = 56/97 (57%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
++ NR PTLH++ + ++ +++ S +NADFDGD+M +H+P S+E + E
Sbjct: 422 ILLNRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLEA 481
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 237
+ ++ I++P N +P++ +D + + +T +D
Sbjct: 482 RILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQD 518
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 159 (61.0 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 33/126 (26%), Positives = 68/126 (53%)
Query: 223 VQDTLTAVRKMTKRD--VFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFR 280
+ T+ +K+ +++ D ++ IR+ V+ NR PTLH++ + ++ +
Sbjct: 393 LSSTVKQAKKLVEKERPEVWDILDEVIREHP-VLLNRAPTLHRLGIQAFEPILIEGKAIQ 451
Query: 281 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLT 340
++ S +NADFDGD+M +HVP S+E + E + ++ +++P N P++ QD +
Sbjct: 452 LHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMIL 511
Query: 341 AVRKMT 346
+ +T
Sbjct: 512 GLYYLT 517
Score = 154 (59.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/94 (29%), Positives = 53/94 (56%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
V+ NR PTLH++ + ++ +++ S +NADFDGD+M +HVP S+E + E
Sbjct: 424 VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA 483
Query: 201 ENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMT 234
+ ++ +++P N P++ QD + + +T
Sbjct: 484 RVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLT 517
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 148 (57.2 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 37/125 (29%), Positives = 68/125 (54%)
Query: 224 QDTLTAVRKMTK-RDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN 282
Q+ +A R + + R D +E I + V+ NR PTLH++ + ++ +++
Sbjct: 467 QNIKSAKRMVERQRPQVWDVLEEVIAEHP-VLLNRAPTLHRLGIQAFEPMLVEGKAIQLH 525
Query: 283 -LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTA 341
L C + +NADFDGD+M +H+P S E +AE + ++ I++P + RP+ D +T
Sbjct: 526 PLVCEA-FNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTG 584
Query: 342 VRKMT 346
+ +T
Sbjct: 585 LYYLT 589
Score = 147 (56.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 35/112 (31%), Positives = 61/112 (54%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMETRAE 199
V+ NR PTLH++ + ++ +++ L C + +NADFDGD+M +H+P S E +AE
Sbjct: 496 VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEA-FNADFDGDQMAVHLPLSAEAQAE 554
Query: 200 VENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGD 251
+ ++ I++P + RP+ D +T + +T +V D E GD
Sbjct: 555 ARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT-EVPGDTGEYQPASGD 605
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 146 (56.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 37/120 (30%), Positives = 65/120 (54%)
Query: 226 TLTAVRKM--TKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN- 282
T+ +KM K + + +E ++ G V+ NR PTLHK+S+ ++ +++
Sbjct: 415 TVKQAKKMIENKTNEVWECLEEVVK-GHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHP 473
Query: 283 LSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 342
L C + +NADFDGD+M +HVP S E AE + + ++ I+ P + + V QD + +
Sbjct: 474 LVCAA-FNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGI 532
Score = 143 (55.4 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 138 GDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMN-LSCTSPYNADFDGDEMNLHVPQSMET 196
G V+ NR PTLHK+S+ ++ +++ L C + +NADFDGD+M +HVP S E
Sbjct: 440 GHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAA-FNADFDGDQMAVHVPLSQEA 498
Query: 197 RAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAV 230
AE + + ++ I+ P + + V QD + +
Sbjct: 499 IAECKVLMLSSMNILLPASGKSVTVPSQDMVLGI 532
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 141 (54.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/109 (29%), Positives = 60/109 (55%)
Query: 227 LTAVRKMTKR---DVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNL 283
+ + R++ +R +V+ D +E +++ V+ NR PTLH++S+ ++ S R++
Sbjct: 450 IKSARRLVERARPEVY-DILEEVVKERP-VMLNRAPTLHRLSIQAFEPVLIDGSALRLHP 507
Query: 284 SCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVM 332
S +NADFDGD+M +HVP S E ++ ++ P + PV+
Sbjct: 508 LVCSAFNADFDGDQMAVHVPLSKAAVKEARETMLSIHNMMLPSSGEPVV 556
Score = 136 (52.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 141 VIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 200
V+ NR PTLH++S+ ++ S R++ S +NADFDGD+M +HVP S E
Sbjct: 477 VMLNRAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEA 536
Query: 201 ENIHVTPRQIITPQNNRPVM 220
++ ++ P + PV+
Sbjct: 537 RETMLSIHNMMLPSSGEPVV 556
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 353 353 0.00079 117 3 11 22 0.47 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 78
No. of states in DFA: 589 (63 KB)
Total size of DFA: 209 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.67u 0.11s 28.78t Elapsed: 00:00:03
Total cpu time: 28.68u 0.11s 28.79t Elapsed: 00:00:03
Start: Thu Aug 15 17:01:26 2013 End: Thu Aug 15 17:01:29 2013