RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1131
(353 letters)
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 163 bits (412), Expect = 5e-45
Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
+ ++ +G P K R + D++ + + G +V+ NR
Sbjct: 656 LLKKMEEKGI--APNVKAARRMLERQRDIKDE----------VWDALEEVIHGKVVLLNR 703
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
PTLH++ + + ++ + +++ +NADFDGD+M +HVP S +AE +
Sbjct: 704 APTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQML 763
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLD 241
+ +++P + P+ +D + + +T+
Sbjct: 764 SAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKK 799
Score = 159 bits (403), Expect = 8e-44
Identities = 26/124 (20%), Positives = 58/124 (46%)
Query: 230 VRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPY 289
+ + + + G +V+ NR PTLH++ + + ++ + +++ +
Sbjct: 676 LERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAF 735
Query: 290 NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRD 349
NADFDGD+M +HVP S +AE ++ +++P + P+ +D + + +T+
Sbjct: 736 NADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVR 795
Query: 350 VFLD 353
Sbjct: 796 KEKK 799
Score = 79.1 bits (194), Expect = 1e-16
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ ++ +G P K R + D++ + + G +V+ NR
Sbjct: 657 LKKMEEKGI--APNVKAARRMLERQRDIKDE----------VWDALEEVIHGKVVLLNRA 704
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNL 85
PTLH++ + + ++ + +++
Sbjct: 705 PTLHRLGIQAFQPVLVEGQSIQLHP 729
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 159 bits (402), Expect = 1e-43
Identities = 101/159 (63%), Positives = 131/159 (82%)
Query: 86 RMFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 145
R+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNR
Sbjct: 386 RLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNR 445
Query: 146 QPTLHKMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHV 205
QP+LHKMSMM HRV+V+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ +
Sbjct: 446 QPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCA 505
Query: 206 TPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVE 244
P QI++PQ+N+P MGIVQDTL +RK+T RD F++ +
Sbjct: 506 VPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQ 544
Score = 124 bits (311), Expect = 9e-32
Identities = 82/134 (61%), Positives = 101/134 (75%)
Query: 220 MGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF 279
G D + R + + KVERHI D D V+FNRQP+LHKMSMM HRV+V+P+STF
Sbjct: 408 SGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTF 467
Query: 280 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTL 339
R+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + P QI++PQ+N+P MGIVQDTL
Sbjct: 468 RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 527
Query: 340 TAVRKMTKRDVFLD 353
+RK+T RD F++
Sbjct: 528 CGIRKLTLRDTFIE 541
Score = 87.2 bits (215), Expect = 2e-19
Identities = 53/87 (60%), Positives = 73/87 (83%)
Query: 1 MFELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQ 60
+ +LVR G +++PGAKY++RD+G+RIDLR+ + D+ LQ G+KVERHI D D V+FNRQ
Sbjct: 387 LTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQ 446
Query: 61 PTLHKMSMMGHRVRVLPWSTFRMNLRM 87
P+LHKMSMM HRV+V+P+STFR+NL +
Sbjct: 447 PSLHKMSMMAHRVKVIPYSTFRLNLSV 473
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 27.6 bits (60), Expect = 2.7
Identities = 35/265 (13%), Positives = 74/265 (27%), Gaps = 19/265 (7%)
Query: 27 DLRFHPKPSDLHL-QCGYKVERHIR--DGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRM 83
+L HP S LH ++ + + D + +F + +M R+ + + +
Sbjct: 56 NLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLEL 115
Query: 84 NLRMFELVRRGNSQYP---GAKYIVRDNGERIDLRFHPKPSDLHLQC-------GYKVER 133
+ L+ P G VR + L Y
Sbjct: 116 LECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGG 175
Query: 134 HIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP---YNADFDGDEMNLHV 190
+ L+ + +++ T + G + L
Sbjct: 176 SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTE 235
Query: 191 PQSMETRAEVENIHVTPRQIITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDG 250
+M + + P N + G+V+ + + M + VER I
Sbjct: 236 VGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS---LLDMAQTWGEFRVVERTITMK 292
Query: 251 DLVIFNRQPTLHKMSMMGHRVRVLP 275
L+ + + ++ G +V P
Sbjct: 293 QLLRALEEGRVREVFGSGTACQVCP 317
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 26.2 bits (56), Expect = 4.9
Identities = 12/105 (11%), Positives = 34/105 (32%)
Query: 151 KMSMMGHRVRVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 210
++ + R + + Y+ D + + V ++ ++ I
Sbjct: 31 EVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI 90
Query: 211 ITPQNNRPVMGIVQDTLTAVRKMTKRDVFLDKVERHIRDGDLVIF 255
+ + I ++ D +++ I+DGDL++
Sbjct: 91 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILA 135
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 101
Score = 25.2 bits (55), Expect = 6.1
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 46 ERHIRDGDLVIFNRQPTLHKMSMM 69
+ DG L++ + + +
Sbjct: 22 KPSFPDGMLILVDPEQAVEPGDFC 45
Score = 25.2 bits (55), Expect = 6.1
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 132 ERHIRDGDLVIFNRQPTLHKMSMM 155
+ DG L++ + + +
Sbjct: 22 KPSFPDGMLILVDPEQAVEPGDFC 45
Score = 25.2 bits (55), Expect = 6.1
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 244 ERHIRDGDLVIFNRQPTLHKMSMM 267
+ DG L++ + + +
Sbjct: 22 KPSFPDGMLILVDPEQAVEPGDFC 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.426
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,379,194
Number of extensions: 66338
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 16
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.9 bits)