BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11310
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S9O|A Chain A, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|B Chain B, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
pdb|3S9O|C Chain C, The Focal Adhesion Targeting (Fat) Domain Of The Focal
Adhesion Kinase Showing N-Terminal Interactions In Cis
Length = 164
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL+ M
Sbjct: 54 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 113
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 114 KLAQQYVMTSLQQEYKKQ 131
>pdb|1OW6|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW6|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|A Chain A, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|B Chain B, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW7|C Chain C, Paxillin Ld4 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|A Chain A, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|B Chain B, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
pdb|1OW8|C Chain C, Paxillin Ld2 Motif Bound To The Focal Adhesion Targeting
(Fat) Domain Of The Focal Adhesion Kinase
Length = 161
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL+ M
Sbjct: 51 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 110
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 111 KLAQQYVMTSLQQEYKKQ 128
>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|3B71|A Chain A, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|B Chain B, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
pdb|3B71|C Chain C, Cd4 Endocytosis Motif Bound To The Focal Adhesion
Targeting (Fat) Domain Of The Focal Adhesion Kinase
Length = 162
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL+ M
Sbjct: 52 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 111
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 112 KLAQQYVMTSLQQEYKKQ 129
>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 126
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 22 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKM 81
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 82 KLAQQYVMTSLQQEYKKQ 99
>pdb|1PV3|A Chain A, Nmr Solution Structure Of The Avian Fat-Domain Of Focal
Adhesion Kinase
Length = 146
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 36 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 95
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 96 KLAQQYVMTSLQQEYKKQ 113
>pdb|1QVX|A Chain A, Solution Structure Of The Fat Domain Of Focal Adhesion
Kinase
Length = 134
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 24 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 83
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 84 KLAQQYVMTSLQQEYKKQ 101
>pdb|1KTM|A Chain A, Solution Structure Of Fat Domain Of Focal Adhesion Kinase
Length = 139
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 89 KLAQQYVMTSLQQEYKKQ 106
>pdb|2L6H|A Chain A, Fat Domain Of Focal Adhesion Kinase Tethered To Ld4 Motif
Of Paxillin Via Ggs Linker
Length = 180
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 89 KLAQQYVMTSLQQEYKKQ 106
>pdb|2L6F|A Chain A, Nmr Solution Structure Of Fat Domain Of Fak Complexed With
Ld2 And Ld4 Motifs Of Paxillin
Length = 215
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 89 KLAQQYVMTSLQQEYKKQ 106
>pdb|2L6G|A Chain A, Fat-Ld2 Double Labeled Construct With Free Ld4 Peptide
Length = 176
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 89 KLAQQYVMTSLQQEYKKQ 106
>pdb|2LK4|A Chain A, Structural And Mechanistic Insights Into The Interaction
Between Pat Pyk2 And Paxillin Ld Motif
Length = 135
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M+LA
Sbjct: 34 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 93
Query: 67 SHTSL 71
+ TSL
Sbjct: 94 AVTSL 98
>pdb|3GM1|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2 In Complex With Paxillin Ld4
Motif-Derived Peptides
pdb|3GM1|B Chain B, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2 In Complex With Paxillin Ld4
Motif-Derived Peptides
pdb|3GM2|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2
pdb|3GM3|A Chain A, Crystal Structure Of The Focal Adhesion Targeting (Fat)
Domain Of Pyk2
Length = 153
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M+LA
Sbjct: 48 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 107
Query: 67 SHTSL 71
+ TSL
Sbjct: 108 AVTSL 112
>pdb|3U3C|A Chain A, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|A Chain A, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|B Chain B, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|C Chain C, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
pdb|3U3F|D Chain D, Structural Basis For The Interaction Of Pyk2 Pat Domain
With Paxillin Ld Motifs
Length = 139
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M+LA
Sbjct: 38 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 97
Query: 67 SHTSL 71
+ TSL
Sbjct: 98 AVTSL 102
>pdb|3HUR|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
Length = 395
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 48 VLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIG 95
++ KD GE + ++A+ YSHT +D + R L VIG
Sbjct: 337 LIGKDGGEQITVEEVAN-YSHTIVDEIQTTLAPRIKRIYTGDLAEVIG 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,467,156
Number of Sequences: 62578
Number of extensions: 77483
Number of successful extensions: 197
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 14
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)