BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11310
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35346|FAK1_RAT Focal adhesion kinase 1 OS=Rattus norvegicus GN=Ptk2 PE=1 SV=1
Length = 1055
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 945 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPILPASTHREIEMAQKLLNSDLGELISKM 1004
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 1005 KLAQQYVMTSLQQEYKKQ 1022
>sp|Q05397|FAK1_HUMAN Focal adhesion kinase 1 OS=Homo sapiens GN=PTK2 PE=1 SV=2
Length = 1052
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL+ M
Sbjct: 942 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 1001
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 1002 KLAQQYVMTSLQQEYKKQ 1019
>sp|P34152|FAK1_MOUSE Focal adhesion kinase 1 OS=Mus musculus GN=Ptk2 PE=1 SV=3
Length = 1090
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + P S H+EIE+A K+L+ D+GEL++ M
Sbjct: 980 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPALPASTHREIEMAQKLLNSDLGELISKM 1039
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 1040 KLAQQYVMTSLQQEYKKQ 1057
>sp|Q91738|FAK1_XENLA Focal adhesion kinase 1 OS=Xenopus laevis GN=ptk2 PE=2 SV=2
Length = 1068
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 958 IQPAPPEEYVPMVKGVGLALRTLLATVDETIPVLPASTHREIEMAQKLLNSDLAELINKM 1017
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 1018 KLAQQYVMTSLQQEYKKQ 1035
>sp|Q00944|FAK1_CHICK Focal adhesion kinase 1 OS=Gallus gallus GN=PTK2 PE=1 SV=2
Length = 1053
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 943 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 1002
Query: 61 KLAHTYSHTSLDNVYRKR 78
KLA Y TSL Y+K+
Sbjct: 1003 KLAQQYVMTSLQQEYKKQ 1020
>sp|Q9QVP9|FAK2_MOUSE Protein-tyrosine kinase 2-beta OS=Mus musculus GN=Ptk2b PE=1 SV=2
Length = 1009
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ MKLA
Sbjct: 904 EDYVVVVKNVGLNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMKLAQQN 963
Query: 67 SHTSL 71
+ TSL
Sbjct: 964 AVTSL 968
>sp|P70600|FAK2_RAT Protein-tyrosine kinase 2-beta OS=Rattus norvegicus GN=Ptk2b PE=1
SV=1
Length = 1009
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 6 TEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHT 65
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M+LA
Sbjct: 903 PEEYVVVVKNVGLNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMRLAQQ 962
Query: 66 YSHTSL 71
+ TSL
Sbjct: 963 NAVTSL 968
>sp|Q14289|FAK2_HUMAN Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=PTK2B PE=1 SV=2
Length = 1009
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTY 66
E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M+LA
Sbjct: 904 EGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQN 963
Query: 67 SHTSL 71
+ TSL
Sbjct: 964 AVTSL 968
>sp|B6JF93|RIMO_OLICO Ribosomal protein S12 methylthiotransferase RimO OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=rimO PE=3 SV=1
Length = 440
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25 TSVDNLVVMFPPSAHKEIEIAHKV--LSKDMGELVACMKLAHTYSHTSLDNV 74
TS + + + PSA K+ E+ + L++++GEL A ++L + Y + +D+V
Sbjct: 194 TSAYGIDIKYAPSAWKDREVRARFVDLARELGELGAWVRLQYVYPYPHVDDV 245
>sp|Q2SR42|SYN_MYCCT Asparagine--tRNA ligase OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=asnS PE=3 SV=1
Length = 454
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 KEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQ---SALTRVIG 95
+EIE+ +V S G+ V+ M L + T L VY+ + + + A Q S++ +VIG
Sbjct: 16 QEIELIARVRSNRQGKFVSFMILNDGTTFTDLQVVYKTKTKGYEQALQARVSSIVKVIG 74
>sp|Q6MUF2|SYN_MYCMS Asparagine--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=asnS PE=3 SV=1
Length = 452
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 40 KEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRG-RRFSSASQSALTRVIG 95
KE+EI +V S G+ V+ M L + T L VY+ +G + A S++ +V+G
Sbjct: 16 KEVEILGRVRSNRQGKFVSFMILNDGTTFTDLQVVYKTKGYEQALQARVSSIVKVVG 72
>sp|Q69422|POLG_GBVB Genome polyprotein OS=Hepatitis GB virus B PE=1 SV=1
Length = 2864
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 19 ELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKL-AHTYSHTSLDNVYRK 77
ELR ++ N +FPPS HK++ +A + SK +G + ++ AHT S ++ ++
Sbjct: 2319 ELRKQKVTI-NRQPLFPPSYHKQVRLAKEKASKVVGVMWDYDEVAAHTPSKSAKSHITGL 2377
Query: 78 RGRRFSSAS 86
RG S +
Sbjct: 2378 RGTDVRSGA 2386
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 29 NLVVMFPPSAHKEIEIAHKVLSKDMG---ELVACMKLAHTYSHTSLDNVYRKRGRRFSSA 85
NL + P AH+ I H ++ D+G L AC+++ ++ D+ + GR F A
Sbjct: 154 NLTISSPLEAHRPSAIIHHIVGVDVGFENPLFACLEVDYS------DSDHDPSGRAFEEA 207
Query: 86 SQS 88
+++
Sbjct: 208 AKT 210
>sp|Q81WR0|MIAB_BACAN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus anthracis GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|A9VS16|MIAB_BACWK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus weihenstephanensis (strain KBAB4) GN=miaB
PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKETIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|Q6HF43|MIAB_BACHK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|Q636Q4|MIAB_BACCZ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ZK / E33L) GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|Q732V4|MIAB_BACC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ATCC 10987) GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|B7HLA6|MIAB_BACC7 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain AH187) GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|B7JJ50|MIAB_BACC0 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain AH820) GN=miaB PE=3 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|A0RHE4|MIAB_BACAH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus thuringiensis (strain Al Hakam) GN=miaB PE=3
SV=2
Length = 509
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYLELV+++ + N + + D ++V FP ++ E
Sbjct: 346 EHYLELVRKIKEAIPNAVLTTD-IIVGFPNETDEQFE 381
>sp|Q28YQ7|NGLY1_DROPS Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Drosophila pseudoobscura pseudoobscura GN=PNGase
PE=3 SV=2
Length = 632
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 2 QQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMK 61
QQN+ YLE V+ + L N+L+ +N + + I + +K + + + L C K
Sbjct: 24 QQNVKNAYLEAVRILLVLLENVLSQPNN-------TKFRTIRLDNKAIKEKLLSLPGCEK 76
Query: 62 LAHT--YSHTSLDNVY 75
L + + HT N Y
Sbjct: 77 LLYAIGFRHTPSSNSY 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,494,289
Number of Sequences: 539616
Number of extensions: 1018743
Number of successful extensions: 3214
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3189
Number of HSP's gapped (non-prelim): 39
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)