Query psy11310
Match_columns 98
No_of_seqs 52 out of 54
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 15:10:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gm3_A Protein tyrosine kinase 100.0 8.6E-43 2.9E-47 258.1 8.9 85 1-85 42-126 (153)
2 1k04_A FADK 1, focal adhesion 100.0 1.2E-41 4.1E-46 253.5 8.6 86 1-86 52-137 (162)
3 2l6f_A Focal adhesion kinase 1 100.0 6.8E-39 2.3E-43 247.3 0.0 85 1-85 29-113 (215)
4 3ajm_A Programmed cell death p 69.6 7.8 0.00027 29.8 5.1 60 8-78 119-178 (213)
5 1u89_A Talin 1, talin; 4-helix 63.5 27 0.00093 24.9 6.7 79 11-92 12-119 (139)
6 1khy_A CLPB protein; alpha hel 51.3 43 0.0015 21.3 5.5 63 9-74 46-109 (148)
7 2d1l_A Metastasis suppressor p 46.7 64 0.0022 24.6 6.6 66 7-78 55-132 (253)
8 2ozb_B U4/U6 small nuclear rib 45.6 19 0.00065 27.6 3.6 42 5-47 58-99 (260)
9 1ddb_A Protein (BID); apoptosi 41.0 22 0.00076 27.1 3.3 46 12-68 105-161 (195)
10 1tr2_A Vinculin isoform 1; act 35.2 1.6E+02 0.0054 26.1 8.1 67 13-85 131-197 (1066)
11 2y1q_A CLPC N-domain, negative 33.0 29 0.001 22.2 2.5 60 9-74 46-106 (150)
12 1gs9_A Apolipoprotein E, APOE4 32.2 81 0.0028 22.2 4.9 46 15-60 55-115 (165)
13 4a1q_A ORF E73; viral protein, 29.7 28 0.00094 22.8 1.9 26 40-65 22-50 (73)
14 2ykt_A Brain-specific angiogen 29.7 1.5E+02 0.0051 22.2 6.2 20 53-72 105-124 (253)
15 2bid_A Protein (BID); programm 29.3 33 0.0011 26.2 2.5 23 61-83 110-132 (197)
16 2l7n_A Talin-1; integrin, bund 27.6 1.8E+02 0.006 21.1 8.1 87 5-95 73-162 (168)
17 2c5k_T Syntaxin TLG1, T-snare 26.8 1.3E+02 0.0046 19.5 7.3 72 7-80 6-77 (95)
18 3gn4_A Myosin-VI; unconvention 26.4 1.2E+02 0.0042 21.7 5.0 49 8-61 97-145 (148)
19 2ys9_A Homeobox and leucine zi 25.0 14 0.00048 24.0 -0.2 22 41-62 23-45 (70)
20 2x0c_A Talin-1; cytoskeleton, 24.7 2.4E+02 0.0084 21.8 9.1 57 8-65 70-164 (309)
21 1s94_A S-syntaxin; three helix 24.4 1.7E+02 0.0058 19.9 5.9 67 5-71 82-153 (180)
22 1eak_A 72 kDa type IV collagen 24.1 92 0.0032 25.4 4.4 50 31-80 3-67 (421)
23 3zbh_A ESXA; unknown function, 22.6 1.2E+02 0.0043 17.7 6.4 56 8-63 20-75 (99)
24 2kii_A Putative uncharacterize 20.7 29 0.00099 24.2 0.7 22 7-29 79-100 (181)
25 3fh2_A Probable ATP-dependent 20.1 65 0.0022 20.9 2.3 61 9-74 47-108 (146)
No 1
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=100.00 E-value=8.6e-43 Score=258.08 Aligned_cols=85 Identities=38% Similarity=0.507 Sum_probs=82.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR 80 (98)
Q Consensus 1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML 80 (98)
|+.++||+|+++||+||++||+||+|||+++|+||+|+|||||||||+|||||+||||+|||||||++|||++||||+||
T Consensus 42 v~~a~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~MkLAqq~~~TtL~eEyrr~ML 121 (153)
T 3gm3_A 42 LAQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLSEECKRQML 121 (153)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy11310 81 RFSSA 85 (98)
Q Consensus 81 ~~~~~ 85 (98)
+++=+
T Consensus 122 saaH~ 126 (153)
T 3gm3_A 122 TASHT 126 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98644
No 2
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=100.00 E-value=1.2e-41 Score=253.52 Aligned_cols=86 Identities=43% Similarity=0.672 Sum_probs=82.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR 80 (98)
Q Consensus 1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML 80 (98)
|++++||+|+++||+||++||+||+|||+++|+||+|+|||||||||+|||||+|||++|||||||++|||++||||+||
T Consensus 52 v~~a~~eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~~rEVema~k~L~kDM~eLis~mklaq~~~~TtL~~EyRk~mL 131 (162)
T 1k04_A 52 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQML 131 (162)
T ss_dssp HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHhHhhhhhccCHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q psy11310 81 RFSSAS 86 (98)
Q Consensus 81 ~~~~~~ 86 (98)
+++-+.
T Consensus 132 saah~L 137 (162)
T 1k04_A 132 TAAHAL 137 (162)
T ss_dssp HHHHHH
T ss_pred hhhHHH
Confidence 876543
No 3
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=100.00 E-value=6.8e-39 Score=247.35 Aligned_cols=85 Identities=42% Similarity=0.652 Sum_probs=82.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR 80 (98)
Q Consensus 1 Vq~a~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML 80 (98)
|++++||+|+++||+||++||+||++||+++|.||+++|||||||||+|||||+|||++|||||||++|||++||||+||
T Consensus 29 I~~a~peeYv~lVK~VGl~LR~LL~sVDel~~~Lp~Sa~rEIEma~KvLnKDM~ELIsaMKLaqq~~~TtL~~EyRK~ML 108 (215)
T 2l6f_A 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKMKLAQQYVMTSLQQEYKKQML 108 (215)
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy11310 81 RFSSA 85 (98)
Q Consensus 81 ~~~~~ 85 (98)
+++-+
T Consensus 109 saaH~ 113 (215)
T 2l6f_A 109 TAAHA 113 (215)
Confidence 87644
No 4
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=69.59 E-value=7.8 Score=29.81 Aligned_cols=60 Identities=22% Similarity=0.522 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHh
Q psy11310 8 HYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKR 78 (98)
Q Consensus 8 ~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ 78 (98)
.|+...|.+.-+.+.||.+|.+..+..|+...+.+|.=.| |.| |--++||+ ||++=+|.+
T Consensus 119 ~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~Kr-------eFV---kySKrFS~-TLKeYFkd~ 178 (213)
T 3ajm_A 119 RFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKK-------EFV---KYSKSFSD-TLKTYFKDG 178 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH-------HHH---HHHHHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH-------HHH---HHhhHhhH-HHHHHHhcC
Confidence 5889999999999999999999999999998888887666 333 56778876 588555544
No 5
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=63.49 E-value=27 Score=24.87 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCchh------------HH-----------------HHHHHHhhhhhHHHHHHHHH
Q psy11310 11 ELVKRVGTELRNLLTSVDNLVVMFPPSAH------------KE-----------------IEIAHKVLSKDMGELVACMK 61 (98)
Q Consensus 11 ~lVK~VGl~LR~LL~SVD~l~p~~P~s~h------------rE-----------------VEmahKvLskDMaELVsaMK 61 (98)
++++.|+.+-+.+-..+++++.+...+.- .+ +=-.-|+|-.-.+.||+++|
T Consensus 12 ~~~~~l~~AA~~Vt~aL~dLL~hik~~~~~~~~~~~~~~~~d~Il~~t~~l~~s~gd~~eMvrqak~Laqat~~LV~~iK 91 (139)
T 1u89_A 12 QLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIK 91 (139)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666653211 12 11223555556778999999
Q ss_pred HHHHhccchhhHHHHHhhhhhhccchhhhhh
Q psy11310 62 LAHTYSHTSLDNVYRKRGRRFSSASQSALTR 92 (98)
Q Consensus 62 LAq~ys~TtLd~eYrK~ML~~~~~~~~~~~~ 92 (98)
..- ...-|.|-|+..|.++=--.-|-.|
T Consensus 92 ~eA---e~~~D~~~q~rLL~AAk~lAdATa~ 119 (139)
T 1u89_A 92 ADA---EGESDLENSRKLLSAAKILADATAK 119 (139)
T ss_dssp HHG---GGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HccCCHHHHHHHHHHHHHHHHHHHH
Confidence 732 4455677788888774333333333
No 6
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=51.30 E-value=43 Score=21.30 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHH-HHHHHHHHhccchhhHH
Q psy11310 9 YLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELV-ACMKLAHTYSHTSLDNV 74 (98)
Q Consensus 9 Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELV-saMKLAq~ys~TtLd~e 74 (98)
...+.+..|...-.+...+++.+..+|...... .+-.+|.++.+++ .|.+.|+++....+..|
T Consensus 46 ~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~---~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~e 109 (148)
T 1khy_A 46 VSPLLTSAGINAGQLRTDINQALNRLPQVEGTG---GDVQPSQDLVRVLNLCDKLAQKRGDNFISSE 109 (148)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTTSCCC----------CBCHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCC---CCcCcCHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 346778899999999999999999998754310 0225788888877 46888998888888777
No 7
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=46.70 E-value=64 Score=24.60 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHH-------HHHHHHhhhhhhhccCCCchhHHHHH-----HHHhhhhhHHHHHHHHHHHHHhccchhhHH
Q psy11310 7 EHYLELVKRVGT-------ELRNLLTSVDNLVVMFPPSAHKEIEI-----AHKVLSKDMGELVACMKLAHTYSHTSLDNV 74 (98)
Q Consensus 7 e~Yv~lVK~VGl-------~LR~LL~SVD~l~p~~P~s~hrEVEm-----ahKvLskDMaELVsaMKLAq~ys~TtLd~e 74 (98)
..|+|.+..||. .-|+|-..+=++ ...||+||. +.++.+.=+..|-.++.+-++|-++.- .+
T Consensus 55 ~af~Da~qKvad~A~~s~g~s~elG~~L~~i-----~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~-K~ 128 (253)
T 2d1l_A 55 AAFLDAFQKVADMATNTRGGTREIGSALTRM-----CMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLD-KD 128 (253)
T ss_dssp HHHHHHHHHHHHHHHTSSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcccCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 457777777765 455555444443 346666663 333333445566677888888876544 34
Q ss_pred HHHh
Q psy11310 75 YRKR 78 (98)
Q Consensus 75 YrK~ 78 (98)
|.|.
T Consensus 129 ~~~~ 132 (253)
T 2d1l_A 129 HAKE 132 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 8
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=45.63 E-value=19 Score=27.58 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHH
Q psy11310 5 LTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHK 47 (98)
Q Consensus 5 ~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahK 47 (98)
.+.+|..+|+.+|-.. ++..+-+++-..+|...-..|-+|-+
T Consensus 58 ~~~~Y~~~V~~ig~~~-~~~~~~~~L~~iL~~~~~~~i~~aA~ 99 (260)
T 2ozb_B 58 NALDYIRTVKELGNSL-DKCKNNENLQQILTNATIMVVSVTAS 99 (260)
T ss_dssp SHHHHHHHHHHHTTCG-GGCTTCTTGGGTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCch-hhccchHHHHHHcCHHHHHHHHHHHH
Confidence 4678999999999874 34334455777788877666665543
No 9
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=40.98 E-value=22 Score=27.07 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=33.8
Q ss_pred HHHHHHHHHH-----------HHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Q psy11310 12 LVKRVGTELR-----------NLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSH 68 (98)
Q Consensus 12 lVK~VGl~LR-----------~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~ 68 (98)
+|..+-..|| .|-+.|++++.++|+.-- |+++.|+=+|=||++-++
T Consensus 105 ~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P~dme-----------kEk~~L~lamLLaKKVa~ 161 (195)
T 1ddb_A 105 LVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFPRDME-----------NDKAMLIMTMLLAKKVAS 161 (195)
T ss_dssp SHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSCSTHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcCchHH-----------HHHHHHHHHHHHHHHHHH
Confidence 4555566666 788889999999995433 556788999999986543
No 10
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=35.17 E-value=1.6e+02 Score=26.15 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhhhhhcc
Q psy11310 13 VKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSA 85 (98)
Q Consensus 13 VK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML~~~~~ 85 (98)
|+++..+.+.++..+..+.. ..+..|+--.-|.|..-|.+|++..|..|+ ..-|.+.|++|+.+...
T Consensus 131 v~kl~~a~~~v~~~L~~~~~---~~~~~elv~~~k~l~~~m~~l~~~~~~r~~---~l~d~~~r~~L~~A~~~ 197 (1066)
T 1tr2_A 131 VRKIIRVCKGILEYLTVAEV---VETMEDLVTYTKNLGPGMTKMAKMIDERQQ---ELTHQEHRVMLVNSMNT 197 (1066)
T ss_dssp HHHHHHHHHHHHHHHHHGGG---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHH---TBSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHH
Confidence 55555566666666655444 366777877888899999999999887654 22377888888776543
No 11
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=33.00 E-value=29 Score=22.22 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHH-HHHHHHHHhccchhhHH
Q psy11310 9 YLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELV-ACMKLAHTYSHTSLDNV 74 (98)
Q Consensus 9 Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELV-saMKLAq~ys~TtLd~e 74 (98)
...+.+..|...-.+...+++.+...|... . +-.+|.++.+++ .+.+.|+++....+..|
T Consensus 46 ~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~-~-----~~~~s~~~~~vL~~A~~~A~~~~~~~i~~e 106 (150)
T 2y1q_A 46 AAKALQALGLGSEKIQKEVESLIGRAQEMS-Q-----TIHYTPRAKKVIELSMDEARKLGHSYVGTE 106 (150)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCC-----------CCEECHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccCCccc-c-----cCCCCHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 455778888888888889999998888643 1 235788888776 46888888888888777
No 12
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=32.19 E-value=81 Score=22.22 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHHHHHHH-HHhhhhhhh-------ccC-------CCchhHHHHHHHHhhhhhHHHHHHHH
Q psy11310 15 RVGTELRN-LLTSVDNLV-------VMF-------PPSAHKEIEIAHKVLSKDMGELVACM 60 (98)
Q Consensus 15 ~VGl~LR~-LL~SVD~l~-------p~~-------P~s~hrEVEmahKvLskDMaELVsaM 60 (98)
.+|.+|+. |-.|+|++. ..+ ......+.+..+.-|.+||.|+=..+
T Consensus 55 el~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l 115 (165)
T 1gs9_A 55 QVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRL 115 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888 445666653 233 33446688888999999999985554
No 13
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=29.75 E-value=28 Score=22.76 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhHHHHHHH---HHHHHH
Q psy11310 40 KEIEIAHKVLSKDMGELVAC---MKLAHT 65 (98)
Q Consensus 40 rEVEmahKvLskDMaELVsa---MKLAq~ 65 (98)
.-.....--||.||+|+|.. |-|.|+
T Consensus 22 ~~lklvsvylnrdmteiieeavvmwliqn 50 (73)
T 4a1q_A 22 HTLKLVSVYLNRDMTEIIEEAVVMWLIQN 50 (73)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhh
Confidence 33445556799999999974 666664
No 14
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=29.74 E-value=1.5e+02 Score=22.21 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhccchhh
Q psy11310 53 MGELVACMKLAHTYSHTSLD 72 (98)
Q Consensus 53 MaELVsaMKLAq~ys~TtLd 72 (98)
+..|-.++..-.+|-+++.+
T Consensus 105 i~pL~~kie~d~K~v~~~~K 124 (253)
T 2ykt_A 105 LTQLEQKVELDSRYLSAALK 124 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44566667777777766654
No 15
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=29.26 E-value=33 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHhccchhhHHHHHhhhhhh
Q psy11310 61 KLAHTYSHTSLDNVYRKRGRRFS 83 (98)
Q Consensus 61 KLAq~ys~TtLd~eYrK~ML~~~ 83 (98)
.||+|+.|++|.+|=|++-|+++
T Consensus 110 ~La~qf~N~~lsEEdrr~~LAaa 132 (197)
T 2bid_A 110 GLALQLRNTSRSEEDRNRDLATA 132 (197)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHH
Confidence 47899999999999999988765
No 16
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=27.57 E-value=1.8e+02 Score=21.08 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=56.8
Q ss_pred chhHHHHHH-HHHHHHHHHHHhhhhhhhccCCCch--hHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhhh
Q psy11310 5 LTEHYLELV-KRVGTELRNLLTSVDNLVVMFPPSA--HKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRR 81 (98)
Q Consensus 5 ~~e~Yv~lV-K~VGl~LR~LL~SVD~l~p~~P~s~--hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML~ 81 (98)
.+|.|.... +++-..||+|=.+|=-+...-+... |+=|.-|+.|+ -|++.||..-|.+-.++. |.+=+-....
T Consensus 73 gne~y~g~aar~~A~aL~~lt~avrgvaatt~d~~~q~~ll~~a~~V~-~~s~~Li~ear~~~~~p~---d~~~~~~L~~ 148 (168)
T 2l7n_A 73 GNENYAGIAARDVAGGLRSLAQAARGVAALTSDPAVQAIVLDTASDVL-DKASSLIEEAKKASGHPG---DPESQQRLAQ 148 (168)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTHHHHHHHHHHHHH-HHHHHHHHHHHHHTBSSS---CHHHHHHHHH
T ss_pred CcHhhhhHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC---CchHHHHHHH
Confidence 467899999 9999999999999998887776554 33445555554 367788877775443322 4443334444
Q ss_pred hhccchhhhhhHhh
Q psy11310 82 FSSASQSALTRVIG 95 (98)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (98)
++.+-.+++.++|.
T Consensus 149 ~ak~vs~aL~~~v~ 162 (168)
T 2l7n_A 149 VAKAVTQALNRCVS 162 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45555556666654
No 17
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=26.80 E-value=1.3e+02 Score=19.48 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhhHHHHHhhh
Q psy11310 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGR 80 (98)
Q Consensus 7 e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLAq~ys~TtLd~eYrK~ML 80 (98)
|-|-...+.+.-.|+.|-.-..+--..-.+++..|++-.-.-|.-|+.+|-.+++-++++ +..+=.=||..+
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--~~~EI~~Rk~~v 77 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD--ENEDVSGREAQV 77 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 667888888888877766655442111115889999999999999999999999999987 333323445444
No 18
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=26.39 E-value=1.2e+02 Score=21.74 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHH
Q psy11310 8 HYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMK 61 (98)
Q Consensus 8 ~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMK 61 (98)
++..-|.++..++.+++..+- -|.-+..||+..-.-|.+++.++...|+
T Consensus 97 k~~~~v~~~~~~i~~~i~kIK-----~~~i~~~~Id~~y~~lv~~~~~~l~~l~ 145 (148)
T 3gn4_A 97 EMSKQVKDLEISIDALMAKIK-----STMMTREQIQKEYDALVKSSAVLLSALQ 145 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----TSCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555542 2233445677777777777777766665
No 19
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.01 E-value=14 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.4
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHH
Q psy11310 41 EIEIAHKVLS-KDMGELVACMKL 62 (98)
Q Consensus 41 EVEmahKvLs-kDMaELVsaMKL 62 (98)
.==.+||.|+ .|+-.|+.+.|+
T Consensus 23 ~Yy~~hk~L~EeDl~~L~~kskm 45 (70)
T 2ys9_A 23 RYWAAHQQLRETDIPQLSQASRL 45 (70)
T ss_dssp HHHHHTCCCCTTHHHHHHHHTTC
T ss_pred HHHHHhcccchhhHHHHHHHhCC
Confidence 3447899999 999999999876
No 20
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=24.66 E-value=2.4e+02 Score=21.77 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=44.4
Q ss_pred HHH-HHHHHHHHHHHHHHhhhh-------------------------------------hhhccCCCchhHHHHHHHHhh
Q psy11310 8 HYL-ELVKRVGTELRNLLTSVD-------------------------------------NLVVMFPPSAHKEIEIAHKVL 49 (98)
Q Consensus 8 ~Yv-~lVK~VGl~LR~LL~SVD-------------------------------------~l~p~~P~s~hrEVEmahKvL 49 (98)
+|+ ..|+.+...|+.|..++= ..+.. |.++.++|=.+-...
T Consensus 70 ~~~g~a~~~~a~al~~Lteaa~~aaylvgVs~p~s~~g~~glvD~~~~~ra~~~i~~ac~~~~~-~~~~q~~vL~~A~~v 148 (309)
T 2x0c_A 70 PEFGDAIATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGE-PGCTQAQVLSAATIV 148 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCBCCBCCSSCSHHHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCccccchHHHHHHHHHHHHHHHhccCC-ccccHHHHHHHHHHH
Confidence 344 447888889999988884 22222 558899998888899
Q ss_pred hhhHHHHHHHHHHHHH
Q psy11310 50 SKDMGELVACMKLAHT 65 (98)
Q Consensus 50 skDMaELVsaMKLAq~ 65 (98)
.|++..|+++=|+|-.
T Consensus 149 a~~t~~L~~~cr~as~ 164 (309)
T 2x0c_A 149 AKHTSALCNSCRLASA 164 (309)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHhc
Confidence 9999999999999974
No 21
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.37 E-value=1.7e+02 Score=19.85 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhccCCC----ch-hHHHHHHHHhhhhhHHHHHHHHHHHHHhccchh
Q psy11310 5 LTEHYLELVKRVGTELRNLLTSVDNLVVMFPP----SA-HKEIEIAHKVLSKDMGELVACMKLAHTYSHTSL 71 (98)
Q Consensus 5 ~~e~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~----s~-hrEVEmahKvLskDMaELVsaMKLAq~ys~TtL 71 (98)
+.+...+-++..+..+|..|..+++.....|. ++ .|=-.--|..|++...++++...-+|.....-.
T Consensus 82 ~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~ 153 (180)
T 1s94_A 82 ELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRC 153 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999987755532 21 111122467899999999999988886655433
No 22
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=24.06 E-value=92 Score=25.45 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=38.6
Q ss_pred hccCCCch--hHHHHHHHHhhhh---------hHHHHHHHHHHHHHhc----cchhhHHHHHhhh
Q psy11310 31 VVMFPPSA--HKEIEIAHKVLSK---------DMGELVACMKLAHTYS----HTSLDNVYRKRGR 80 (98)
Q Consensus 31 ~p~~P~s~--hrEVEmahKvLsk---------DMaELVsaMKLAq~ys----~TtLd~eYrK~ML 80 (98)
+..||.+. ..+.+.|++-|.+ +-.+|.+|+|.-|++. .-.||++=.+.|.
T Consensus 3 ~~~~p~~~~~~~~~~~a~~yL~~~yGyl~~~~~~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~ 67 (421)
T 1eak_A 3 IIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMR 67 (421)
T ss_dssp CCCCTTCCCCCCHHHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHT
T ss_pred eEECCCCCCCCccHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHcCCCCCCccCHHHHHHhc
Confidence 34567666 5688999999999 6678999999999997 4457877666664
No 23
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.62 E-value=1.2e+02 Score=17.66 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHHHHHHH
Q psy11310 8 HYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACMKLA 63 (98)
Q Consensus 8 ~Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVsaMKLA 63 (98)
++-.....+--.|..|-+.|+.+...-...+.....-.+.-++.++.+++..+.-.
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEV 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777777777888888888888888888888888877543
No 24
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=20.73 E-value=29 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q psy11310 7 EHYLELVKRVGTELRNLLTSVDN 29 (98)
Q Consensus 7 e~Yv~lVK~VGl~LR~LL~SVD~ 29 (98)
+.|-.+.+ .|..+++.|.|+|.
T Consensus 79 ~~y~~~l~-~g~~~~dFL~~ld~ 100 (181)
T 2kii_A 79 SRHTDVVD-KFDDFTSLVMGIHD 100 (181)
T ss_dssp HHHHHHHG-GGSSHHHHHTTTTT
T ss_pred HHhHHHHh-cCCCHHHHHHHHhH
Confidence 45889999 99999999999998
No 25
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=20.10 E-value=65 Score=20.87 Aligned_cols=61 Identities=7% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHhhhhhHHHHHH-HHHHHHHhccchhhHH
Q psy11310 9 YLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVA-CMKLAHTYSHTSLDNV 74 (98)
Q Consensus 9 Yv~lVK~VGl~LR~LL~SVD~l~p~~P~s~hrEVEmahKvLskDMaELVs-aMKLAq~ys~TtLd~e 74 (98)
...+.+..|.....+...+++.+...|...-.+ -.+|.++.++++ |.+.|+++.+..++.|
T Consensus 47 ~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~~~~-----~~~s~~~~~vL~~A~~~a~~~~~~~i~~e 108 (146)
T 3fh2_A 47 AAKALESMGISLDAVRQEVEEIIGQGSQPTTGH-----IPFTPRAKKVLELSLREGLQMGHKYIGTE 108 (146)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCCSCCCCSC-----CCBCHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccCCCCCcCC-----CcCCHHHHHHHHHHHHHHHHcCCCcCcHH
Confidence 345678888888899999999999888643222 246777777654 5688888888877777
Done!