RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11310
(98 letters)
>gnl|CDD|146323 pfam03623, Focal_AT, Focal adhesion targeting region. Focal
adhesion kinase (FAK) is a tyrosine kinase found in
focal adhesions, intracellular signaling complexes that
are formed following engagement of the extracellular
matrix by integrins. The C-terminal 'focal adhesion
targeting' (FAT) region is necessary and sufficient for
localising FAK to focal adhesions. The crystal structure
of FAT shows it forms a four-helix bundle that resembles
those found in two other proteins involved in cell
adhesion, alpha-catenin and vinculin. The binding of FAT
to the focal adhesion protein, paxillin, requires the
integrity of the helical bundle, whereas binding to
another focal adhesion protein, talin, does not.
Length = 139
Score = 99.0 bits (247), Expect = 3e-28
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
VQ+ +E Y+ LVK VG LR LL SVD ++ P S H EIE+A K+L+KD+GEL++ M
Sbjct: 29 VQKLPSEEYVNLVKNVGLALRKLLGSVDEILPSLPASTHTEIEMAQKLLNKDLGELISKM 88
Query: 61 KLAHTYSHTSLDNVYRK 77
+LA Y+ TSLD Y+K
Sbjct: 89 RLAQQYAVTSLDEEYKK 105
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 418
Score = 27.6 bits (61), Expect = 1.0
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 6 TEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLS 50
+ Y ELV+R+ T + ++ D L+V FP ++ ++K+++
Sbjct: 258 NQQYRELVERLKTAMPDISLQTD-LIVGFPSETEEQFNQSYKLMA 301
>gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed.
Length = 245
Score = 25.5 bits (56), Expect = 5.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 25 TSVDNLVVMFPPSAHKEI 42
TSVD +V+ PPSAH+E+
Sbjct: 65 TSVDTIVLAMPPSAHEEL 82
>gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 509
Score = 25.4 bits (56), Expect = 5.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFP 35
E YLELV+++ + N+ + D ++V FP
Sbjct: 347 ESYLELVRKIKEAIPNVALTTD-IIVGFP 374
>gnl|CDD|100807 PRK01189, PRK01189, V-type ATP synthase subunit F; Provisional.
Length = 104
Score = 24.8 bits (54), Expect = 5.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 19 ELRNLLTSVDNLVVMFPPSAHKE----IEIAHKVLSKDMGEL 56
LR+L +S LVV P E E+A ++L D+G++
Sbjct: 63 TLRSLESSSKPLVVFIPLPGISEEESIEEMAKRILGIDIGDV 104
>gnl|CDD|240472 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM18/MID1, also
known as FXY or RNF59. This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is at the C-terminus of the overall domain
architecture of MID1 (also known as FXY, RNF59, TRIM18)
gene represented by a RING finger domain (RING), two
B-box motifs (BBOX), coiled-coil C-terminal to Bbox
domain (BBC) and fibronectin type 3 domain (FN3).
Mutations in the human MID1 gene result in X-linked
Opitz G/BBB syndrome (OS), a disorder affecting
development of midline structures, causing
craniofacial, urogenital, gastrointestinal and
cardiovascular abnormalities. A unique MID1 gene
mutation located in a variable loop in the SPRY domain
alters conformation of the binding pocket and may
affect the binding affinity to the PRY/SPRY domain.
Length = 177
Score = 25.0 bits (54), Expect = 6.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 35 PPSAHKEIEIAHKVLSKDMGELVACMKLAHT----YSHTSL---DNVYRKRGRRF 82
P SAH++++++H L+ + E + K +HT S S NV+ GR +
Sbjct: 6 PKSAHRKLKVSHDNLTVERDETSS--KKSHTPERFTSQGSYGVAGNVFIDSGRHY 58
>gnl|CDD|237675 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 439
Score = 25.3 bits (56), Expect = 6.8
Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFP 35
E+YLELV+++ + + ++ + D ++V FP
Sbjct: 282 EYYLELVEKIKSNIPDVAITTD-IIVGFP 309
>gnl|CDD|237678 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 455
Score = 25.2 bits (55), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 7 EHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIE 43
EHYL LV ++ + N+ S D +++ FP ++ E
Sbjct: 293 EHYLSLVGKLKASIPNVALSTD-ILIGFPGETEEDFE 328
>gnl|CDD|198420 cd10462, PUB_UBA, PNGase/UBA or UBX (PUB) domain of
Ubiquitin-associated (UBA) domain containing proteins.
The PUB domain functions as a p97 (also known as
valosin-containing protein or VCP) adaptor by
interacting with the D1 and/or D2 ATPase domains. The
type II AAA+ ATPase p97 is involved in a variety of
cellular processes such as the deglycosylation of ERAD
substrates, membrane fusion, transcription factor
activation and cell cycle regulation through
differential binding to specific adaptor proteins. The
UBA domain, along with UBL (ubiquitin-like) domain, has
been implicated in proteasomal degradation by
associating with substrates destined for degradation as
well as with subunits of the proteasome, thus
regulating protein turnover.
Length = 100
Score = 24.4 bits (53), Expect = 7.7
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 50 SKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRVIGF 96
D L+ C+ TY + D+ ++ ++ +++ +++V+ F
Sbjct: 10 DTDKQGLMTCLNTLRTYISNAHDHPLEEKYKKIRKENKAFVSKVLIF 56
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein. Contains an
ATP-binding domain at the N-terminal end of the protein.
Possibly part of a superfamily of beta-lactmases
[Hypothetical proteins, Conserved].
Length = 422
Score = 25.0 bits (55), Expect = 8.0
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 34 FPPSAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSALTRV 93
F PS K +E + + G ++ ++ + L + RK GR+ + +S + +
Sbjct: 199 FTPSEAKVLEQLNDIFKNADGRIIVATFASNIHRVQQLIQIARKNGRKVAVYGRS-MESL 257
Query: 94 IG 95
IG
Sbjct: 258 IG 259
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 25.1 bits (55), Expect = 8.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 55 ELVACMKLAHTYSHTSLDNVYRKRGRRFSSASQSA 89
E VA M+ Y+H + K G +FSS S
Sbjct: 73 ETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCE 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.370
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,709,983
Number of extensions: 374663
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 21
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)