RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11310
(98 letters)
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT,
FAK, LD2, LD4, fusion protein, chimera protei
transferase,cell adhesion; NMR {Gallus gallus} PDB:
2l6g_A 2l6h_A
Length = 215
Score = 98.0 bits (243), Expect = 3e-27
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+ EL+ M
Sbjct: 29 IQPAPPEEYVPMVKEVGLALRTLLATVDESLPVLPASTHREIEMAQKLLNSDLAELINKM 88
Query: 61 KLAHTYSHTSLDNVYRK 77
KLA Y TSL Y+K
Sbjct: 89 KLAQQYVMTSLQQEYKK 105
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical
bundle forming A helix-exchange transferase; 1.95A {Homo
sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A
1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Length = 162
Score = 96.1 bits (238), Expect = 5e-27
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+Q E Y+ +VK VG LR LL +VD + + P S H+EIE+A K+L+ D+GEL+ M
Sbjct: 52 IQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM 111
Query: 61 KLAHTYSHTSLDNVYRK 77
KLA Y TSL Y+K
Sbjct: 112 KLAQQYVMTSLQQEYKK 128
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase;
2.60A {Homo sapiens} PDB: 3gm1_A 3gm2_A
Length = 153
Score = 93.4 bits (231), Expect = 4e-26
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 1 VQQNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVACM 60
+ Q E Y+ +VK VG LR L+ SVD+L+ P S+ EIE K+L+KD+ EL+ M
Sbjct: 42 LAQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKM 101
Query: 61 KLAHTYSHTSLDNVYRK 77
+LA + TSL ++
Sbjct: 102 RLAQQNAVTSLSEECKR 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.002
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 28/98 (28%)
Query: 1 VQQNLTEHYLELVKRVGTEL-RNLLTSVD--NLVVMFPPSAHKEIEIAHKVLSKDMGELV 57
V+ + + +++ TE L D L + +++
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK------- 124
Query: 58 ACMKLAHTYSHTSLDNVYRKR---GRRFSSASQSALTR 92
Y R R F S SAL R
Sbjct: 125 -------NY--------ITARIMAKRPFDKKSNSALFR 147
Score = 29.2 bits (65), Expect = 0.19
Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 72/156 (46%)
Query: 3 QNLTEHYLE---------------LVKRVGTELRNLLTSVDNLVVMFP------------ 35
Q T+ Y E L+K L L+ + + +F
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 36 ---PS-------------------AHKEIEIAHKVLSKDMGELVACMKLAHTYSH----- 68
P AH + K+L GEL + +K A +S
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 69 ------TSLDNVYRKRGRRFSSASQSALTRVIGFYI 98
S ++ F + + A+T + F+I
Sbjct: 281 VAIAETDSWES--------FFVSVRKAIT--VLFFI 306
Score = 28.5 bits (63), Expect = 0.35
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 26/90 (28%)
Query: 1 VQQNL--TEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSKDMGELVA 58
VQ + T +L K+V L N NLVV PP + L
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQS-----------------LYG 388
Query: 59 -CMKLAHTYSHTSLDN---VYRKRGRRFSS 84
+ L + + LD + +R +FS+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 26.2 bits (58), Expect = 2.1
Identities = 4/48 (8%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 29 NLVVMFPP-SAHKEIEIAHKVLSKDMGELVACMKLAHTYSHTSLDNVY 75
+ P + + A ++ ++V + + + + N++
Sbjct: 246 KFTMFMPSFQGPEVVASAGDKVANPANKMV---IVNRCFQNPTYKNIF 290
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 24.9 bits (55), Expect = 5.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 16 VGTELRNLLTSVDNL---VVMFP---PSAHKEIEIAHKVLSKDMG 54
VGT+L LT D + VV P P + + +L + +G
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVG 337
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 24.8 bits (53), Expect = 6.9
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 3 QNLTEHYLELVKRVGTELRNLLTSVDNLVVMFPPSAHKEIEIAHKVLSK 51
Q L E ++ V V +EL + + + +P + I + +
Sbjct: 438 QKLKEPSIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIRE 486
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.370
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,388,688
Number of extensions: 68581
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 9
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)