BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11311
(499 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 293/476 (61%), Gaps = 75/476 (15%)
Query: 22 GESEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHC 81
GE A +++D +W +++ ++ EDS ++SDEDSLCNKLCT+TITQKEFMNQHWYHC
Sbjct: 1626 GEERA----IEVDSDWVEELAVEE-EDSQAEDSDEDSLCNKLCTFTITQKEFMNQHWYHC 1680
Query: 82 HTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKRNPQESSAAM 141
HTCKM+DGVGVC+VCA+VCHK+H+I+Y+K+G+FFCDCGAKE+G CLAL KR P
Sbjct: 1681 HTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVKRTP------- 1733
Query: 142 SSASLSHQESSSMPSSLRQRSSF--EPILSNSYHYMYDDNYYGYNQIKIENLREKLGPES 199
SS M S++++ S+F EP +S S + + ++
Sbjct: 1734 ---------SSGMSSTMKE-SAFQSEPRVSESL---------------VRHASTSPADKA 1768
Query: 200 SAAMSSASLSHQESSSMPSSLRQRSSFEPILSNSYHYMYDDNYYGYNQIKIENLREKLGP 259
+S ++ +E S R +E RE+L
Sbjct: 1769 KVTISDGKVADEEKPKKSSLCR---------------------------TVEGCREELQN 1801
Query: 260 VSPNIFDRIWEILPPILEVFKEMTPALKAGIAKTSPVGVFDRVSHGLFQLQNMQHKFVEN 319
+ F P +L++ + A++ + S VG R L +L + K VE
Sbjct: 1802 QANFSFA------PLVLDMLNFLMDAIQTNFQQASAVGSSSRAQQALSELHTVD-KVVEM 1854
Query: 320 TDNLMVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVA 379
TD LMVP +GSQEGAFENVRMN +GDQGQTIRQLIS + +RR MC+LSSP +RQHL A
Sbjct: 1855 TDQLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAMCVLSSPHGRRQHL-A 1913
Query: 380 VSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK 439
VSHEKGKIT+LQLS LLKQ DSSKRKLTL +LAS +P T+LS+ NPC E+ LAVCGLK
Sbjct: 1914 VSHEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSLTGNPCKEDYLAVCGLK 1973
Query: 440 ECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQL 495
+C V +F+S S +D + ++P T N+IIKA+W+PG Q+ LAIVTA +KIY L
Sbjct: 1974 DCHVLTFSSSGS-VSDHLVLHPQLATGNFIIKAVWLPGSQTELAIVTADFVKIYDL 2028
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 293/476 (61%), Gaps = 75/476 (15%)
Query: 22 GESEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHC 81
GE A +++D +W +++ ++ EDS ++SDEDSLCNKLCT+TITQKEFMNQHWYHC
Sbjct: 1624 GEERA----IEVDSDWVEELAVEE-EDSQAEDSDEDSLCNKLCTFTITQKEFMNQHWYHC 1678
Query: 82 HTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKRNPQESSAAM 141
HTCKM+DGVGVC+VCA+VCHK+H+I+Y+K+G+FFCDCGAKE+G CLAL KR P
Sbjct: 1679 HTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVKRTP------- 1731
Query: 142 SSASLSHQESSSMPSSLRQRSSF--EPILSNSYHYMYDDNYYGYNQIKIENLREKLGPES 199
SS M S++++ S+F EP +S S + + ++
Sbjct: 1732 ---------SSGMSSTMKE-SAFQSEPRVSESL---------------VRHASTSPADKA 1766
Query: 200 SAAMSSASLSHQESSSMPSSLRQRSSFEPILSNSYHYMYDDNYYGYNQIKIENLREKLGP 259
+S ++ +E S R +E RE+L
Sbjct: 1767 KVTISDGKVTDEEKPKKSSLCR---------------------------TVEGCREELQN 1799
Query: 260 VSPNIFDRIWEILPPILEVFKEMTPALKAGIAKTSPVGVFDRVSHGLFQLQNMQHKFVEN 319
+ F P +L++ + A++ + S VG R L +L + K VE
Sbjct: 1800 QANFSFA------PLVLDMLSFLMDAIQTNFQQASAVGSSSRAQQALSELHTVD-KGVEM 1852
Query: 320 TDNLMVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVA 379
TD LMVP +GSQEGAFENVRMN +GDQGQTIRQLIS + +RR MC+LSSP +RQHL A
Sbjct: 1853 TDQLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAMCVLSSPHGRRQHL-A 1911
Query: 380 VSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK 439
VSHEKGKIT+LQLS LLKQ DSSKRKLTL +LAS +P T+LS+ NPC E+ LAVCGLK
Sbjct: 1912 VSHEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSLTGNPCKEDYLAVCGLK 1971
Query: 440 ECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQL 495
+C V +F+S S +D + ++P T N+IIKA+W+PG Q+ LAIVTA +KIY L
Sbjct: 1972 DCHVLTFSSSGS-VSDHLVLHPQLATGNFIIKAVWLPGSQTELAIVTADFVKIYDL 2026
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/474 (45%), Positives = 284/474 (59%), Gaps = 70/474 (14%)
Query: 22 GESEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHC 81
GE A +++D +W +++ ++ EDS ++SDEDSLCNKLCT+TITQKEFMNQHWYHC
Sbjct: 1625 GEERA----IEVDSDWVEELAVEE-EDSQAEDSDEDSLCNKLCTFTITQKEFMNQHWYHC 1679
Query: 82 HTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKRNPQESSAAM 141
HTCKM+DGVGVC+VCA+VCHK+H+I+Y+K+G+FFCDCGAKE+G CLAL KR P ++
Sbjct: 1680 HTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVKRTPSSGMSST 1739
Query: 142 SSASLSHQESSSMPSSLRQRSSFEPILSNSYHYMYDDNYYGYNQIKIENLREKLGPESSA 201
S E S +R S+ P ++
Sbjct: 1740 MKESAFQSEPRISESLVRHASTSSP-----------------------------ADKAKV 1770
Query: 202 AMSSASLSHQESSSMPSSLRQRSSFEPILSNSYHYMYDDNYYGYNQIKIENLREKLGPVS 261
+S ++ +E S R L N ++ + +
Sbjct: 1771 TISDGKVADEEKPKKSSLCRTVEGCREELQNQANFSF----------------------A 1808
Query: 262 PNIFDRIWEILPPILEVFKEMTPALKAGIAKTSPVGVFDRVSHGLFQLQNMQHKFVENTD 321
P + D + ++ I F++ S VG R L +L ++ K VE TD
Sbjct: 1809 PLVLDMLNFLMDAIQTNFQQ-----------ASAVGSSSRAQQALSELHTVE-KAVEMTD 1856
Query: 322 NLMVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVS 381
LMVP +GSQEGAFENVRMN +GDQGQTIRQLIS + +RR MC+LSSP +RQHL AVS
Sbjct: 1857 QLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAMCVLSSPHGRRQHL-AVS 1915
Query: 382 HEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKEC 441
HEKGKIT+LQLS LLKQ DSSKRKLTL +LAS +P T+LS+ NPC E+ LAVCGLK+C
Sbjct: 1916 HEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSLTGNPCKEDYLAVCGLKDC 1975
Query: 442 IVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQL 495
V +F+S S +D + ++P T N+IIKA+W+PG Q+ LAIVTA +KIY L
Sbjct: 1976 HVLTFSSSGS-VSDHLVLHPQLATGNFIIKAVWLPGSQTELAIVTADFVKIYDL 2028
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 228 bits (582), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 152/221 (68%), Gaps = 3/221 (1%)
Query: 275 ILEVFKEMTPALKAGIAKTSPVGVFDRVSHGLFQLQNMQHKFVENTDNLMVPVMGSQEGA 334
ILE F + P+++ S VG R + L +L ++ F + TD LM +GSQEGA
Sbjct: 1971 ILEYFDVLLPSIRENCTLYSIVGCHRRATAALQRLHQLEQSF-QITDQLMFATLGSQEGA 2029
Query: 335 FENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSG 394
FENVRMN +GDQGQTI+ L+++ +IRR C LSSP +RQ L AVSHEKGK+T+LQLS
Sbjct: 2030 FENVRMNYSGDQGQTIKHLLTSGTIRRVAFCCLSSPHGRRQQL-AVSHEKGKVTILQLSA 2088
Query: 395 LLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQAT 454
LLKQ D+SKRKLTL +L+S + T+LS+ ANPCNE+ LAVCGLKEC V +F+S S
Sbjct: 2089 LLKQADASKRKLTLTQLSSAPIACTVLSLAANPCNEDCLAVCGLKECHVLTFSSSGS-TN 2147
Query: 455 DSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQL 495
+ I I P E N++ KA+W+PG Q+ LAIVT +KIY L
Sbjct: 2148 EHIVITPQLENGNFLKKAMWLPGSQTLLAIVTTDYVKIYDL 2188
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 102/166 (61%), Gaps = 21/166 (12%)
Query: 22 GESEAFPPPLDLDIEWNDDVTHDDDE--DSAGDESDED--------SLCNKLCTYTITQK 71
G + PP W+D++ D D+ D +E + +L NKLCT++ TQK
Sbjct: 1772 GSRQHMPP-------WDDELQTDIDDLYDELAEEEQDSLLDDSDEDTLNNKLCTFSQTQK 1824
Query: 72 EFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTK 131
EFMNQHWYHCHTC MI+ VGVCSVCA+VCHK HD++Y+K+GNFFCDCGAKE+G C AL++
Sbjct: 1825 EFMNQHWYHCHTCNMINTVGVCSVCARVCHKGHDVSYAKYGNFFCDCGAKEDGSCQALSR 1884
Query: 132 R----NPQESSAAMSSASLSHQESSSMPSSLRQRSSFEPILSNSYH 173
R +ES S+S S+ S + ++RS+ P + H
Sbjct: 1885 RLGSGEVRESVGPGGSSSCSYLPSHMSLLASKKRSNTAPGATQQQH 1930
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 152/221 (68%), Gaps = 3/221 (1%)
Query: 275 ILEVFKEMTPALKAGIAKTSPVGVFDRVSHGLFQLQNMQHKFVENTDNLMVPVMGSQEGA 334
ILE F + P++ S VG R + L +L ++ F + TD LM +GSQEGA
Sbjct: 1940 ILEYFDLLLPSINENCMLYSIVGCHKRATAALERLHLLEQSF-QVTDQLMFATLGSQEGA 1998
Query: 335 FENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSG 394
FENVRMN +GDQGQTI+ L+S+ +RR C LSSP +RQ L AVSHEKGK+T+LQLS
Sbjct: 1999 FENVRMNYSGDQGQTIKHLLSSGVVRRVAFCCLSSPHGRRQQL-AVSHEKGKVTILQLSA 2057
Query: 395 LLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQAT 454
LLKQ D+SKRKLTL +L+S + T++S+ ANPCNE+ LAVCGLKEC + +F+S S
Sbjct: 2058 LLKQADASKRKLTLTQLSSAPIACTVISLAANPCNEDCLAVCGLKECHILTFSSSGS-TN 2116
Query: 455 DSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQL 495
+ I +NP E NYI KA+W+PG Q+ LA+VT+ +KIY L
Sbjct: 2117 EHIVVNPQLENGNYIKKAVWLPGSQTLLAVVTSDYVKIYDL 2157
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 95/139 (68%), Gaps = 20/139 (14%)
Query: 37 WNDDVTHDDDE--DSAGDESDED---------SLCNKLCTYTITQKEFMNQHWYHCHTCK 85
W+D++ D DE D +E ++D +L NKLCT++ TQKEFMNQHWYHCHTC
Sbjct: 1758 WDDELQTDIDELYDELAEEGEQDSLLDDSDEDTLNNKLCTFSQTQKEFMNQHWYHCHTCN 1817
Query: 86 MIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKR---NPQESSAAMS 142
MI+ VGVCSVCA+VCHK HD++Y+K+GNFFCDCGAKE+G C AL++R N SA +
Sbjct: 1818 MINTVGVCSVCARVCHKGHDVSYAKYGNFFCDCGAKEDGSCQALSRRIGSNEVRDSAGIG 1877
Query: 143 SASLSH------QESSSMP 155
S SH ++ SS+P
Sbjct: 1878 SYLPSHMSLLAGKKRSSLP 1896
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 39 DDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQ 98
D+ + +E++ ++ +E L +K+CTYT T+ ++++QHWY C+TC + G CSVC +
Sbjct: 2019 DEKVVNGNENTGEEDDEERKLSSKVCTYTFTKNDYIDQHWYFCYTCGLKFSEGCCSVCVK 2078
Query: 99 VCHKNHDITYSKFGNFFCDC--GAKENGQCLALTKR 132
VCHK H ++YS++ FFCDC GA + C AL R
Sbjct: 2079 VCHKGHQVSYSRYSRFFCDCGAGAGKGNPCKALKPR 2114
>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
Length = 5098
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 36 EWNDDVTHDDDEDSAGDESDEDS-----LCNKLCTYTITQKEFMNQHWYHCHTCKMIDGV 90
E DD T D + S E +ED+ L +K+CT+T + FM QHWY C+TC +
Sbjct: 1542 EDEDDGTSDGEVASLDKEDEEDANSERYLASKVCTFTSSGSNFMEQHWYFCYTCDLTVSK 1601
Query: 91 GVCSVCAQVCHKNHDITYSKFGNFFCDCGA----KENGQCLALTKRNPQESSAA 140
G CSVCA+VCH+ H + YS+ FFCDCGA + QCL K N S+ A
Sbjct: 1602 GCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPA 1655
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 38/259 (14%)
Query: 246 NQIKIENLREKLGPVSPNIFDRIWEILPPILEVFKEMTPALKAGIAKTSPVGVFDRVSHG 305
Q K+ L E+LG I DR+ E+ +L +T +G++K V
Sbjct: 1700 TQYKMSLLLEELG-----IEDRVLELFSSLL---PSITSKRDSGLSKEKQV--------- 1742
Query: 306 LFQLQNMQHKFVENTDNLMVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMC 365
N+ V + D ++ + + + ++++ + + ++ L++N S+ ++ +
Sbjct: 1743 -----NLGKDKVLSFDTDLLQLKKAYKSGSLDLKIKADYTNSKDLKSLLANGSLVKSLLS 1797
Query: 366 ILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQ-----IDSSKRKLTLIKLASVSLPITI 420
+ S R L E K+ + + L+ Q I++ K + + V I
Sbjct: 1798 V-----SVRGRLAV--GEGDKVAIFDVGQLIGQATIAPINADKANVKPLSRNIVRFEIVH 1850
Query: 421 LSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQS 480
LS NP E LAV GL++C + + + D + + + + +I + W+PG Q
Sbjct: 1851 LSF--NPVVENYLAVAGLEDCQILTLNH-RGEVIDRLAVELALQGA-FIRRIDWVPGSQV 1906
Query: 481 TLAIVTALNIKIYQLRPES 499
L +VT +KIY L +S
Sbjct: 1907 QLMVVTNKFVKIYDLSQDS 1925
>sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica
GN=Os09g0247700 PE=2 SV=1
Length = 4965
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 8 LFPKGLNKSLAECVGESEAFPPPLDLDI----EWNDDVTHDD-----DEDSAGDESDEDS 58
L PK L S + + ++ +D D E DD T D D D D + E +
Sbjct: 1368 LIPKQLKNSDSLVLRTNQESNSTVDCDASSGEEDEDDGTSDGELVSIDRDEEEDGNSERA 1427
Query: 59 LCNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDC 118
L K+CT+T + FM QHWY C+TC + G CSVCA+VCH+ H + YS+ FFCDC
Sbjct: 1428 LATKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHQGHRVVYSRSSRFFCDC 1487
Query: 119 GA 120
GA
Sbjct: 1488 GA 1489
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 426 NPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIV 485
NP E L+V G ++C V + S + TD + I + + YI W+PG Q L +V
Sbjct: 1713 NPLVEHYLSVAGYEDCQVLTLNS-RGEVTDRLAIELALQGA-YIRCVEWVPGSQVQLMVV 1770
Query: 486 TALNIKIYQL 495
T +KIY L
Sbjct: 1771 TNKFVKIYDL 1780
>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2
Length = 2792
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFG-NFFCDC 118
CN C++T T E +NQ + C TC +++ + C+ CA+VCHK HD + +CDC
Sbjct: 1169 CNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTAYCDC 1228
Query: 119 GAK 121
K
Sbjct: 1229 WEK 1231
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
Length = 2799
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFG-NFFCDC 118
CN C++T T E +NQ + C TC +++ + C+ CA+VCHK HD + +CDC
Sbjct: 1175 CNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTAYCDC 1234
Query: 119 GAK 121
K
Sbjct: 1235 WEK 1237
>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1
SV=3
Length = 2788
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFG-NFFCDC 118
CN C++T T E +NQ + C TC +++ + C+ CA+VCHK HD + +CDC
Sbjct: 1164 CNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTAYCDC 1223
Query: 119 GAK 121
K
Sbjct: 1224 WEK 1226
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 40 DVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQH-WYHCHTCKMIDGVGVCSVCAQ 98
+VT D++ ++ E ++ C Y I+ H +Y CHTC D +C C +
Sbjct: 811 NVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIK 870
Query: 99 VCHKNHDITYSKFGNFFCDCGA 120
CH+ HD+ + + FFCDCGA
Sbjct: 871 KCHQGHDVEFIRHDRFFCDCGA 892
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 40 DVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQH-WYHCHTCKMIDGVGVCSVCAQ 98
+VT D++ ++ E ++ C Y I+ H +Y CHTC D +C C +
Sbjct: 727 NVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIK 786
Query: 99 VCHKNHDITYSKFGNFFCDCGA 120
CH+ HD+ + + FFCDCGA
Sbjct: 787 KCHQGHDVEFIRHDRFFCDCGA 808
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 40 DVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQH-WYHCHTCKMIDGVGVCSVCAQ 98
+VT D++ ++ E ++ C Y I+ H +Y CHTC D +C C +
Sbjct: 727 NVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIK 786
Query: 99 VCHKNHDITYSKFGNFFCDCGA 120
CH+ HD+ + + FFCDCGA
Sbjct: 787 KCHQGHDVEFIRHDRFFCDCGA 808
>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd
PE=1 SV=3
Length = 2885
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 49 SAGDESDEDSLC-NKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDIT 107
S D+S +C N C++T T + +NQ+ + C TC + + C+ CA+VCHK HD
Sbjct: 1203 SPADQSPLHVICYNDTCSFTWTGADHINQNIFECKTCGLTGSLCCCTECARVCHKGHDCK 1262
Query: 108 YSKFG-NFFCDCGAKENGQCLALTKRN 133
+ +CDC E +C AL N
Sbjct: 1263 LKRTAPTAYCDCW--EKCKCKALIAGN 1287
>sp|Q54DV0|UBR7_DICDI Putative E3 ubiquitin-protein ligase ubr7 OS=Dictyostelium
discoideum GN=ubr7 PE=3 SV=2
Length = 465
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 16/80 (20%)
Query: 46 DEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCHTCKMIDG--VGVCSVCAQVCHKN 103
+++ GDES +CT+ K ++NQ + C TC++ + G C C+ CH
Sbjct: 92 EQEDWGDES--------ICTF---DKGYINQSVFACKTCQLSNDKLFGFCYGCSMHCHLY 140
Query: 104 HDITYSKFG--NFFCDCGAK 121
HD+ Y F NF CDCG K
Sbjct: 141 HDV-YELFNKRNFRCDCGTK 159
>sp|Q09329|MLO2_SCHPO Protein mlo2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mlo2 PE=2 SV=1
Length = 329
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 64 CTYTITQKEFMNQHWYHCHTCKMIDGV--GVCSVCAQVCHKNHDIT--YSKFGNFFCDCG 119
CTY++ ++ Q Y C TC+ G VC C+ CH +HD+ ++K +F CDCG
Sbjct: 35 CTYSMG---YLKQPLYACLTCQKASGSLNAVCYSCSISCHADHDLVDLFNK-RHFRCDCG 90
Query: 120 A 120
Sbjct: 91 T 91
>sp|C5FP02|ACUK_ARTOC Transcription activator of gluconeogenesis MCYG_04674
OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)
GN=MCYG_04674 PE=3 SV=1
Length = 739
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 134 PQESSAAMSSASLSHQESSSM--------PSSLRQRSSFEPILS-NSYHYMYDDNYYGYN 184
P E+ A ASL +Q +++ PSS Q+ I S N Y+ +Y GY+
Sbjct: 108 PNEALMAGVGASLYNQRNTTQNSINGANAPSSASQQ-----ITSPNFYNAQQSPDYNGYS 162
Query: 185 QIKIENLREKLGPESSAAMSSASLSHQESSSMPS-----SLRQRSSFEPILSNSYHYMYD 239
Q K E +GPE+ A+ S S ++Q MP+ SL Q +S P +N ++
Sbjct: 163 QTKAELQDSTIGPENFASQSPVSPTYQMGQPMPNQGLSPSLPQSASETPSTANGAPSQFN 222
Query: 240 DNYY 243
++
Sbjct: 223 SAFF 226
>sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7
PE=1 SV=2
Length = 425
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 64 CTYTITQKEFMNQHWYHCHTC--KMIDGVGVCSVCAQVCHKNHDI--TYSKFGNFFCDCG 119
C+Y+ Q Q Y C TC + + G+C C+ CH +H + Y+K NF CDCG
Sbjct: 46 CSYS--QGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTK-RNFRCDCG 102
>sp|P59318|ARGD_MYXXA Acetylornithine aminotransferase OS=Myxococcus xanthus GN=argD PE=3
SV=1
Length = 401
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 114 FFCDCGAKENGQCLALTK-----RNPQESSAAMSSASLSHQESSSMPSSLRQ---RSSFE 165
FFC+ GA+ N L LT+ R E +S S H + + ++ Q + FE
Sbjct: 116 FFCNSGAEANEALLKLTRKVMKDRGTPERFEVISFDSSFHGRTLATVTATGQAKYQKGFE 175
Query: 166 PILSNSYHYMYDDNYYGYNQIKIENLREKLGPESSAAM 203
P+ + H Y D +E +R+ +GP ++A +
Sbjct: 176 PLPAGFTHVPYGD---------LEAVRKAVGPATAAIL 204
>sp|Q8BU04|UBR7_MOUSE Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7
PE=2 SV=1
Length = 425
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 64 CTYTITQKEFMNQHWYHCHTC--KMIDGVGVCSVCAQVCHKNHDI--TYSKFGNFFCDCG 119
C+Y+ Q Q Y C TC + + G+C C+ CH +H + Y+K NF CDCG
Sbjct: 46 CSYS--QGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTK-RNFRCDCG 102
>sp|Q9C6W4|BGA15_ARATH Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1
Length = 779
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 90 VGVCSVCAQVCHKN-----------HDITYSKFGNFFCDCGAKENGQCLA 128
+GV SVCA V KN I ++ FGN DCG+ E G C A
Sbjct: 685 IGVGSVCANVYEKNVLELSCNGKPISAIKFASFGNPGGDCGSFEKGTCEA 734
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis
(strain 168) GN=yvdP PE=1 SV=1
Length = 447
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 105 DITYSKFGNFFCDCGA---KENGQCLALTKRNPQESSAAMSSASLSHQESSSMPSSLRQR 161
D T ++ FF + G + A R+P + +S QE S++ S R R
Sbjct: 331 DATGTEANFFFINWGGAISRVPKDETAFFWRHPLFYTEWTASWKNKSQEDSNLASVERVR 390
Query: 162 SSFEPILSNSYHYMYDDN-------YYGYNQIKIENLREKLGPES 199
+P ++ SY + D N YYG N ++ ++ K PE+
Sbjct: 391 QLMQPYVAGSYVNVPDQNIENFGKEYYGANFARLREIKAKYDPEN 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,319,272
Number of Sequences: 539616
Number of extensions: 7369468
Number of successful extensions: 28713
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 28508
Number of HSP's gapped (non-prelim): 163
length of query: 499
length of database: 191,569,459
effective HSP length: 122
effective length of query: 377
effective length of database: 125,736,307
effective search space: 47402587739
effective search space used: 47402587739
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)