Query psy11311
Match_columns 499
No_of_seqs 144 out of 283
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 15:11:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2752|consensus 99.6 2E-16 4.4E-21 159.3 1.4 79 56-138 35-119 (345)
2 PF02207 zf-UBR: Putative zinc 99.4 4.3E-14 9.4E-19 114.3 3.4 64 62-129 1-70 (71)
3 KOG1777|consensus 99.4 2.5E-13 5.5E-18 142.4 3.0 81 51-131 533-615 (625)
4 KOG0943|consensus 99.3 9.6E-13 2.1E-17 148.2 2.8 83 51-133 1229-1313(3015)
5 smart00396 ZnF_UBR1 Putative z 99.3 3.9E-12 8.6E-17 103.7 5.2 63 63-129 2-70 (71)
6 KOG1776|consensus 98.4 3.4E-08 7.4E-13 108.5 -1.3 60 62-122 765-825 (1110)
7 PF10168 Nup88: Nuclear pore c 97.6 0.00077 1.7E-08 75.7 14.4 152 331-497 10-180 (717)
8 cd00200 WD40 WD40 domain, foun 94.4 0.73 1.6E-05 40.1 11.2 103 375-497 105-208 (289)
9 cd00200 WD40 WD40 domain, foun 94.2 1 2.3E-05 39.2 11.8 106 368-497 59-166 (289)
10 PF10214 Rrn6: RNA polymerase 94.2 0.49 1.1E-05 53.6 12.3 137 356-498 79-234 (765)
11 PTZ00421 coronin; Provisional 93.4 1.1 2.4E-05 48.5 12.7 78 418-497 76-157 (493)
12 PLN00181 protein SPA1-RELATED; 92.8 1.6 3.4E-05 49.1 13.1 114 369-497 492-607 (793)
13 KOG4460|consensus 92.7 0.48 1E-05 52.8 8.7 86 411-498 97-200 (741)
14 PRK11028 6-phosphogluconolacto 91.8 2.1 4.6E-05 42.1 11.4 115 369-497 88-206 (330)
15 PTZ00421 coronin; Provisional 91.8 2.1 4.7E-05 46.4 12.3 106 377-497 90-199 (493)
16 PF08662 eIF2A: Eukaryotic tra 91.7 2.4 5.2E-05 40.0 11.2 110 355-496 58-179 (194)
17 PTZ00420 coronin; Provisional 91.7 2.7 5.8E-05 46.9 13.2 112 364-497 129-249 (568)
18 KOG0269|consensus 90.5 0.89 1.9E-05 52.2 8.1 141 328-496 151-296 (839)
19 PRK11028 6-phosphogluconolacto 89.4 4.2 9.1E-05 40.0 11.0 110 369-497 43-157 (330)
20 KOG0264|consensus 88.4 2.1 4.7E-05 46.3 8.7 106 375-497 240-348 (422)
21 TIGR03866 PQQ_ABC_repeats PQQ- 87.7 6.5 0.00014 36.2 10.5 112 369-497 165-280 (300)
22 PF10282 Lactonase: Lactonase, 86.9 11 0.00024 38.2 12.5 113 373-498 47-176 (345)
23 PF00643 zf-B_box: B-box zinc 86.6 0.7 1.5E-05 33.4 2.8 27 77-107 14-40 (42)
24 KOG0310|consensus 84.3 4.3 9.4E-05 44.6 8.5 101 375-497 80-185 (487)
25 KOG4378|consensus 83.8 5.2 0.00011 44.7 8.9 80 372-464 175-254 (673)
26 PTZ00420 coronin; Provisional 83.7 5.4 0.00012 44.5 9.1 78 418-497 75-157 (568)
27 KOG0279|consensus 83.4 3.9 8.4E-05 42.7 7.3 137 324-497 41-181 (315)
28 PLN00181 protein SPA1-RELATED; 82.6 11 0.00025 42.4 11.3 102 377-497 590-691 (793)
29 PF08662 eIF2A: Eukaryotic tra 82.4 6.6 0.00014 37.1 8.0 69 420-497 62-134 (194)
30 KOG0290|consensus 79.1 6.7 0.00014 41.5 7.3 112 372-497 207-319 (364)
31 smart00336 BBOX B-Box-type zin 78.0 1.6 3.5E-05 30.9 1.9 29 75-107 12-40 (42)
32 KOG1274|consensus 77.1 5.6 0.00012 46.7 6.7 78 416-496 137-218 (933)
33 TIGR03866 PQQ_ABC_repeats PQQ- 76.5 24 0.00053 32.5 9.6 99 377-497 3-104 (300)
34 cd00021 BBOX B-Box-type zinc f 72.0 2.8 6.1E-05 29.3 1.8 29 76-108 10-38 (39)
35 KOG0650|consensus 70.1 9.9 0.00022 43.3 6.3 138 345-497 430-596 (733)
36 PF04053 Coatomer_WDAD: Coatom 67.2 22 0.00048 38.6 8.1 42 401-445 18-59 (443)
37 KOG0321|consensus 66.6 9.4 0.0002 43.6 5.3 33 364-396 53-85 (720)
38 PF00400 WD40: WD domain, G-be 66.2 13 0.00028 25.2 4.2 29 466-494 11-39 (39)
39 KOG1140|consensus 65.7 2.5 5.3E-05 52.5 0.7 64 73-137 21-91 (1738)
40 PF00780 CNH: CNH domain; Int 63.9 1.1E+02 0.0023 29.4 11.2 147 328-497 12-166 (275)
41 KOG0318|consensus 62.5 66 0.0014 36.5 10.6 108 365-497 448-561 (603)
42 KOG0266|consensus 61.9 98 0.0021 33.0 11.6 111 365-498 208-320 (456)
43 KOG0306|consensus 61.4 49 0.0011 38.9 9.7 115 369-496 463-580 (888)
44 KOG0268|consensus 60.8 16 0.00034 39.7 5.4 113 363-496 190-302 (433)
45 KOG0279|consensus 59.9 1.2E+02 0.0025 32.3 11.3 130 346-497 180-314 (315)
46 KOG1587|consensus 58.4 78 0.0017 35.7 10.5 151 319-498 321-474 (555)
47 PF09826 Beta_propel: Beta pro 54.3 91 0.002 34.6 10.1 106 385-497 402-519 (521)
48 KOG0290|consensus 53.8 37 0.00081 36.1 6.7 84 411-498 38-131 (364)
49 KOG1445|consensus 50.6 48 0.001 38.6 7.3 110 377-497 593-709 (1012)
50 smart00320 WD40 WD40 repeats. 50.1 27 0.00058 20.6 3.2 29 466-494 12-40 (40)
51 KOG0650|consensus 48.9 1.1E+02 0.0024 35.4 9.7 75 419-498 443-556 (733)
52 PF14761 HPS3_N: Hermansky-Pud 48.1 51 0.0011 33.1 6.4 69 374-448 146-215 (215)
53 KOG1274|consensus 47.9 1.5E+02 0.0033 35.5 10.9 107 377-496 152-262 (933)
54 KOG4378|consensus 46.5 27 0.0006 39.3 4.6 105 377-496 5-109 (673)
55 KOG0283|consensus 46.3 69 0.0015 37.3 7.9 78 415-496 449-532 (712)
56 KOG2445|consensus 45.6 99 0.0021 33.3 8.3 84 409-496 163-256 (361)
57 COG0120 RpiA Ribose 5-phosphat 45.3 5 0.00011 40.4 -1.0 60 405-475 123-182 (227)
58 KOG0647|consensus 45.1 63 0.0014 34.5 6.7 74 418-498 28-104 (347)
59 TIGR01171 rplB_bact ribosomal 43.9 2.7E+02 0.0058 29.0 10.9 89 404-493 61-163 (273)
60 PF15492 Nbas_N: Neuroblastoma 43.4 2.3E+02 0.0049 29.9 10.4 29 358-393 45-73 (282)
61 CHL00052 rpl2 ribosomal protei 40.9 3.2E+02 0.0069 28.5 11.0 106 384-493 44-163 (273)
62 KOG0318|consensus 39.9 98 0.0021 35.2 7.5 109 372-499 158-268 (603)
63 COG5354 Uncharacterized protei 39.1 55 0.0012 36.9 5.5 123 347-496 264-395 (561)
64 KOG0266|consensus 38.7 4.4E+02 0.0095 28.2 12.0 116 361-497 160-277 (456)
65 KOG2041|consensus 38.0 1.7E+02 0.0036 35.0 9.1 104 373-498 228-339 (1189)
66 COG3204 Uncharacterized protei 37.1 80 0.0017 33.5 6.1 82 373-462 191-275 (316)
67 PF04053 Coatomer_WDAD: Coatom 36.7 1.4E+02 0.0031 32.5 8.2 95 374-497 79-174 (443)
68 PF15390 DUF4613: Domain of un 34.4 2.5E+02 0.0055 32.6 9.7 106 376-494 74-184 (671)
69 KOG0645|consensus 32.7 5.6E+02 0.012 27.4 11.2 109 360-494 61-178 (312)
70 KOG1445|consensus 32.4 1.3E+02 0.0029 35.3 7.2 104 381-498 51-160 (1012)
71 cd02340 ZZ_NBR1_like Zinc fing 32.4 42 0.0009 25.4 2.4 32 73-107 9-41 (43)
72 TIGR02658 TTQ_MADH_Hv methylam 31.9 5.5E+02 0.012 27.4 11.3 112 375-497 206-331 (352)
73 PF06977 SdiA-regulated: SdiA- 31.9 92 0.002 31.4 5.4 84 373-461 128-212 (248)
74 PTZ00180 60S ribosomal protein 31.6 3.7E+02 0.008 28.0 9.7 89 404-493 30-137 (260)
75 KOG0293|consensus 30.8 98 0.0021 34.5 5.7 74 417-496 269-342 (519)
76 KOG0277|consensus 30.7 1.7E+02 0.0036 31.0 7.1 110 367-496 154-265 (311)
77 KOG2096|consensus 30.2 2.3E+02 0.0049 30.9 8.1 105 375-496 199-308 (420)
78 KOG0771|consensus 29.3 2.6E+02 0.0057 30.7 8.5 85 407-498 270-356 (398)
79 KOG0294|consensus 29.1 2.8E+02 0.0062 30.0 8.5 45 375-422 98-144 (362)
80 PF04797 Herpes_ORF11: Herpesv 28.9 80 0.0017 33.5 4.6 58 405-485 272-329 (379)
81 KOG0641|consensus 28.6 4.9E+02 0.011 27.4 9.9 110 369-496 240-349 (350)
82 KOG0307|consensus 27.8 1.3E+02 0.0029 36.5 6.6 134 350-498 58-194 (1049)
83 PF02239 Cytochrom_D1: Cytochr 27.6 2.1E+02 0.0045 30.1 7.4 74 368-459 44-118 (369)
84 PF02239 Cytochrom_D1: Cytochr 27.2 5.7E+02 0.012 26.9 10.5 84 379-477 10-100 (369)
85 KOG1407|consensus 27.1 4.6E+02 0.01 27.9 9.5 145 319-498 157-313 (313)
86 KOG2111|consensus 26.5 2.2E+02 0.0047 30.8 7.2 66 373-448 191-257 (346)
87 KOG2377|consensus 26.4 1.6E+02 0.0035 33.4 6.5 71 419-495 68-139 (657)
88 PF03178 CPSF_A: CPSF A subuni 26.2 6.7E+02 0.014 25.0 11.7 102 375-496 99-202 (321)
89 KOG0268|consensus 26.0 1.3E+02 0.0028 33.0 5.5 118 345-492 126-253 (433)
90 KOG0276|consensus 25.5 1.9E+02 0.0041 33.8 6.9 67 420-494 143-213 (794)
91 KOG1407|consensus 25.0 1.8E+02 0.004 30.8 6.2 67 364-448 112-178 (313)
92 KOG0289|consensus 24.9 2.8E+02 0.006 31.2 7.8 84 409-497 295-378 (506)
93 KOG0264|consensus 24.8 3.6E+02 0.0078 29.9 8.6 120 364-496 276-404 (422)
94 PHA02754 hypothetical protein; 24.7 1.1E+02 0.0024 25.7 3.7 28 465-492 30-57 (67)
95 PRK04922 tolB translocation pr 23.4 7.8E+02 0.017 25.9 10.6 70 420-497 294-369 (433)
96 KOG3243|consensus 23.3 26 0.00056 33.4 -0.1 21 470-491 53-73 (158)
97 PF11768 DUF3312: Protein of u 23.1 2E+02 0.0044 32.7 6.6 80 408-497 248-330 (545)
98 KOG0265|consensus 22.9 3.8E+02 0.0082 28.9 8.1 82 410-497 40-121 (338)
99 PF08596 Lgl_C: Lethal giant l 22.7 4.9E+02 0.011 28.0 9.1 118 374-497 96-244 (395)
100 PF14941 OAF: Transcriptional 22.5 53 0.0011 33.6 1.8 48 57-110 180-231 (240)
101 PF00569 ZZ: Zinc finger, ZZ t 22.3 97 0.0021 23.4 2.8 30 73-105 14-45 (46)
102 PF06977 SdiA-regulated: SdiA- 22.0 4.2E+02 0.0091 26.8 8.0 46 414-461 18-63 (248)
103 PRK05137 tolB translocation pr 21.9 2.4E+02 0.0051 29.6 6.5 111 363-496 204-322 (435)
104 KOG0291|consensus 21.7 2.6E+02 0.0057 33.3 7.2 82 412-496 515-612 (893)
105 PF09082 DUF1922: Domain of un 21.6 40 0.00087 28.5 0.7 9 114-122 4-12 (68)
106 KOG4131|consensus 21.5 2.1E+02 0.0045 29.9 5.8 44 295-343 115-159 (272)
107 PF12894 Apc4_WD40: Anaphase-p 21.2 2E+02 0.0044 22.1 4.4 38 408-446 2-40 (47)
108 PRK09374 rplB 50S ribosomal pr 20.9 6.3E+02 0.014 26.5 9.2 88 405-493 64-165 (276)
109 KOG1240|consensus 20.8 8.6E+02 0.019 30.8 11.3 115 377-497 1063-1182(1431)
110 PF04841 Vps16_N: Vps16, N-ter 20.7 5E+02 0.011 27.7 8.7 48 442-496 62-109 (410)
111 KOG0649|consensus 20.6 90 0.002 32.8 3.0 65 377-447 24-89 (325)
112 KOG1007|consensus 20.5 3.5E+02 0.0076 29.2 7.3 82 373-468 225-306 (370)
113 KOG0286|consensus 20.1 1.1E+03 0.024 25.5 10.9 122 348-497 49-175 (343)
No 1
>KOG2752|consensus
Probab=99.59 E-value=2e-16 Score=159.33 Aligned_cols=79 Identities=33% Similarity=0.770 Sum_probs=69.7
Q ss_pred cccCCCCCccccccccccc-ccceeeccCCCCCC-CceeehhhhhhhcCCCeEE--EeecCceEeeCCCCC--CCcceec
Q psy11311 56 EDSLCNKLCTYTITQKEFM-NQHWYHCHTCKMID-GVGVCSVCAQVCHKNHDIT--YSKFGNFFCDCGAKE--NGQCLAL 129 (499)
Q Consensus 56 e~~l~~~~CTf~~TG~~~i-rQ~~Y~C~TC~~~~-~~gIC~aCA~vCH~GHdLv--y~K~r~F~CDCG~~k--~~~Ckll 129 (499)
........|||. +||+ ||.+|.|+||.|.. -+|||++|+..||.||+++ |+| |+|+||||+.+ ..+|.++
T Consensus 35 L~~~~~~~CTy~---~Gy~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tK-R~FrCDCg~sk~g~~sc~l~ 110 (345)
T KOG2752|consen 35 LGTQNPDVCTYA---KGYKKRQALFSCLTCTPAPEMAGVCYACSLSCHDGHELVELYTK-RNFRCDCGNSKFGRCSCNLL 110 (345)
T ss_pred cCCCCCcccccc---cCcccccceeEeecccCChhhceeEEEeeeeecCCceeeecccc-CCcccccccccccccccccc
Confidence 334568899999 9997 89999999999998 5899999999999999998 999 99999999999 5677779
Q ss_pred ccCCCCCCc
Q psy11311 130 TKRNPQESS 138 (499)
Q Consensus 130 ~~K~~~~~~ 138 (499)
..++..|+.
T Consensus 111 ~~~~~~n~~ 119 (345)
T KOG2752|consen 111 EDKDAENSE 119 (345)
T ss_pred cccccccch
Confidence 988877653
No 2
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=99.45 E-value=4.3e-14 Score=114.34 Aligned_cols=64 Identities=39% Similarity=0.888 Sum_probs=44.3
Q ss_pred CCcccccccccccccceeeccCCCCCCCceeehhh-hhhhcCCCeEEEeecC-ceEeeCCCCC----CCcceec
Q psy11311 62 KLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVC-AQVCHKNHDITYSKFG-NFFCDCGAKE----NGQCLAL 129 (499)
Q Consensus 62 ~~CTf~~TG~~~irQ~~Y~C~TC~~~~~~gIC~aC-A~vCH~GHdLvy~K~r-~F~CDCG~~k----~~~Ckll 129 (499)
+.|++.++.. |.+|.|+||.+++..+||..| ++.||+||++++.+.. +|+||||+.. .+.|+..
T Consensus 1 ~~C~~~~~~~----q~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~~~~~CDCG~~~~~k~~~~C~~H 70 (71)
T PF02207_consen 1 KKCTYVWTSG----QIFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSSSGGCCDCGDPEAWKKEGFCKKH 70 (71)
T ss_dssp -SS--B--TT-----EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--SCEBB-TT-GGGBSS--S-TTT
T ss_pred CcCCCCCcCC----CEEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeCCCeEEeCCCCccccCCCCCCCC
Confidence 4688885544 999999999999999999999 8999999999977755 9999999986 3456643
No 3
>KOG1777|consensus
Probab=99.36 E-value=2.5e-13 Score=142.44 Aligned_cols=81 Identities=26% Similarity=0.708 Sum_probs=74.6
Q ss_pred CCCCccccCCCCCccccccccc-ccccceeeccCCCCCCCceeehhhhhhhcCCCeEEEeecCceEeeCCCCC-CCccee
Q psy11311 51 GDESDEDSLCNKLCTYTITQKE-FMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCGAKE-NGQCLA 128 (499)
Q Consensus 51 ~eds~e~~l~~~~CTf~~TG~~-~irQ~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLvy~K~r~F~CDCG~~k-~~~Ckl 128 (499)
..|-.|++.....|.|.+++.. |++..+|+|.||+.++..+||..|.+.||+||+|.|.|..+||||||++. ...|.+
T Consensus 533 N~D~vekAik~GqCLfkvSs~~syPMHnFYRC~TCNttdRNAIC~nCI~~CH~GH~Vefir~Drffcdcgagtl~~~c~l 612 (625)
T KOG1777|consen 533 NLDHVEKAIKKGQCLFKVSSYTSYPMHNFYRCITCNTTDRNAICVNCIKRCHEGHDVEFIRHDRFFCDCGAGTLSNVCDL 612 (625)
T ss_pred chHHHHHHhhcCceEEEecCCCcccccceeEeeecCCccccHHHHHHHHHhcCCCceEEEeeceEEEecCCceecceeec
Confidence 4677889999999999999875 78999999999999999999999999999999999999999999999998 788888
Q ss_pred ccc
Q psy11311 129 LTK 131 (499)
Q Consensus 129 l~~ 131 (499)
...
T Consensus 613 q~e 615 (625)
T KOG1777|consen 613 QGE 615 (625)
T ss_pred cCC
Confidence 653
No 4
>KOG0943|consensus
Probab=99.29 E-value=9.6e-13 Score=148.18 Aligned_cols=83 Identities=36% Similarity=0.764 Sum_probs=75.2
Q ss_pred CCCCccccCC-CCCcccccccccccccceeeccCCCCCCCceeehhhhhhhcCCCeEEEeec-CceEeeCCCCCCCccee
Q psy11311 51 GDESDEDSLC-NKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKF-GNFFCDCGAKENGQCLA 128 (499)
Q Consensus 51 ~eds~e~~l~-~~~CTf~~TG~~~irQ~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLvy~K~-r~F~CDCG~~k~~~Ckl 128 (499)
.|||+.+.|+ ++.|+|++||...++|.+|.|+||++.+..|+|+.||.+||+|||....+. -..||||+.+..++||.
T Consensus 1229 aDDSPLfiLC~NDtCSFTWTGadHINQDIfECkTCGL~~SLCCCsECAltCHk~HDCkLKRTSPTAYCDCWEKssCkCKa 1308 (3015)
T KOG0943|consen 1229 ADDSPLFILCCNDTCSFTWTGADHINQDIFECKTCGLLESLCCCSECALTCHKGHDCKLKRTSPTAYCDCWEKSSCKCKA 1308 (3015)
T ss_pred CCCCceEEEEecCccceeecchhhccchhhhhcccccchhhhhhHHHHHHhccCCccceeccCCcceeehhhcccccchh
Confidence 5899999988 899999999999999999999999999999999999999999999976553 67799999998899998
Q ss_pred cccCC
Q psy11311 129 LTKRN 133 (499)
Q Consensus 129 l~~K~ 133 (499)
+...+
T Consensus 1309 LIAGn 1313 (3015)
T KOG0943|consen 1309 LIAGN 1313 (3015)
T ss_pred hhcch
Confidence 77543
No 5
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=99.28 E-value=3.9e-12 Score=103.73 Aligned_cols=63 Identities=40% Similarity=0.786 Sum_probs=52.2
Q ss_pred CcccccccccccccceeeccCCCCCCCceeehhhhh-hhcCCCeEEEeecCc-eEeeCCCCC----CCcceec
Q psy11311 63 LCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQ-VCHKNHDITYSKFGN-FFCDCGAKE----NGQCLAL 129 (499)
Q Consensus 63 ~CTf~~TG~~~irQ~~Y~C~TC~~~~~~gIC~aCA~-vCH~GHdLvy~K~r~-F~CDCG~~k----~~~Ckll 129 (499)
.|++..+... .+|+|+||.+.+..+||..|+. .||+||++.+...++ |+||||+.. +++|+..
T Consensus 2 ~C~~~~~~~~----~~y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~~~~~~~CDCG~~~~~~~~~~C~~h 70 (71)
T smart00396 2 VCTYKFTGGE----VIYRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKTSRGSGICDCGDKEAWNEDLKCKAH 70 (71)
T ss_pred CCCCccCCCC----EEEECcCCCCCCCEeEChHHCCCCCCCCCCEEEEEecCCEEECCCChhccCCCcccccc
Confidence 5888855444 3499999999999999999998 999999998555566 999999984 6778764
No 6
>KOG1776|consensus
Probab=98.41 E-value=3.4e-08 Score=108.53 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCcccccccccccccceeeccCCCCCCCc-eeehhhhhhhcCCCeEEEeecCceEeeCCCCC
Q psy11311 62 KLCTYTITQKEFMNQHWYHCHTCKMIDGV-GVCSVCAQVCHKNHDITYSKFGNFFCDCGAKE 122 (499)
Q Consensus 62 ~~CTf~~TG~~~irQ~~Y~C~TC~~~~~~-gIC~aCA~vCH~GHdLvy~K~r~F~CDCG~~k 122 (499)
..|||.+++.-|+.|+||.|.||.+..+. |.|.+|+.+||.||++-|.+ +.|+||||.+.
T Consensus 765 ~~~T~Kkk~q~~m~n~~~q~~k~~M~~~~gG~~kV~s~t~H~~~~i~~S~-~~~~C~C~Es~ 825 (1110)
T KOG1776|consen 765 RDETEKKKKQMAMLNREKQLTKMRMKVGTGGQIKVSSRTLHNEPSIDDSD-SLPCCICRESV 825 (1110)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhheeeeccCceEEEeeecccCCCCccccC-CCceeeccccc
Confidence 45999999999999999999999999885 99999999999999999997 99999999975
No 7
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.65 E-value=0.00077 Score=75.70 Aligned_cols=152 Identities=17% Similarity=0.273 Sum_probs=104.3
Q ss_pred CCccccccccccCCCcchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhccccccccccccc-c
Q psy11311 331 QEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTL-I 409 (499)
Q Consensus 331 qeGafenVr~~~~g~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl-~ 409 (499)
+...|..+|-..+.+... .+....|.+|+|. .+.|+|-..+...+..+.+..+...++.. .+..- +
T Consensus 10 ~h~lF~~l~~~l~~~~~~------~~~~~~rNLl~~~------d~~L~vWd~~e~~l~~~nlr~~~~~~~~~-~~~~~q~ 76 (717)
T PF10168_consen 10 NHPLFKRLREGLSSSSKG------SSERHTRNLLACR------DGDLFVWDSSECCLLTVNLRSLESDAEGP-AKSSYQK 76 (717)
T ss_pred CChhHHHhhccCCCCCcc------cccccceeeEEEe------CCEEEEEECCCCEEEEEeeccccccccCc-cccCcce
Confidence 346788877666543221 2233449999994 46788887788888888888888765432 12222 2
Q ss_pred cccccccceeEEEeeecCCCcceeeeeccceeEEEEecC----CCCccc---c-----eeeecccc---CCCceeEeeEE
Q psy11311 410 KLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTS----GMSQAT---D-----SITINPHC---ETSNYIIKALW 474 (499)
Q Consensus 410 rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~----~G~~v~---d-----~l~i~l~l---~~~~fIik~~W 474 (499)
=+-+.++-|+|=+|..||.. .+||++|-+..-|+.+-. +|. +- + -..|...+ ..+.-|.+|.|
T Consensus 77 L~~~~~~~f~v~~i~~n~~g-~~lal~G~~~v~V~~LP~r~g~~~~-~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~W 154 (717)
T PF10168_consen 77 LLPSNPPLFEVHQISLNPTG-SLLALVGPRGVVVLELPRRWGKNGE-FEDGKKEINCRTVPVDERFFTSNSSLEIKQVRW 154 (717)
T ss_pred eecCCCCceeEEEEEECCCC-CEEEEEcCCcEEEEEeccccCcccc-ccCCCcceeEEEEEechhhccCCCCceEEEEEE
Confidence 33456788999999999987 999999999999999943 343 21 1 12222222 24689999999
Q ss_pred ecCC--CceEEEeecC-ceEEeecCC
Q psy11311 475 IPGR--QSTLAIVTAL-NIKIYQLRP 497 (499)
Q Consensus 475 ipgs--q~~LAVvT~~-fVKIYDLs~ 497 (499)
=|++ ...|+|.|++ -+++||+++
T Consensus 155 hP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 155 HPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred cCCCCCCCeEEEEecCCEEEEEecCC
Confidence 9997 3567776665 579999974
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.38 E-value=0.73 Score=40.14 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=62.8
Q ss_pred ceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCC-CCcc
Q psy11311 375 QHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSG-MSQA 453 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~-G~~v 453 (499)
.++++++.+.|.|.++++... +....++ .-+-.|..+.++|. +.+|++.+ .+..|..++-+ ++ .
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~-----~~~~~i~~~~~~~~-~~~l~~~~-~~~~i~i~d~~~~~-~ 169 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETG-------KCLTTLR-----GHTDWVNSVAFSPD-GTFVASSS-QDGTIKLWDLRTGK-C 169 (289)
T ss_pred CCEEEEecCCCeEEEEECCCc-------EEEEEec-----cCCCcEEEEEEcCc-CCEEEEEc-CCCcEEEEEccccc-c
Confidence 456677666999999998621 0011111 22346889999998 45666555 45555555543 33 2
Q ss_pred cceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 454 TDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 454 ~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
...+. .....|..+.|.|..+..++......|+|||+..
T Consensus 170 ~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 170 VATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ceeEe-----cCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 22222 2245799999999976434444478999999864
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.21 E-value=1 Score=39.17 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=64.3
Q ss_pred cCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEec
Q psy11311 368 SSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFT 447 (499)
Q Consensus 368 ~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~ 447 (499)
.+|.+ ..| +++...|.|.|+++..- + . +..+. .-.-.|..+.++|. .++|++++ .+..|..++
T Consensus 59 ~~~~~--~~l-~~~~~~~~i~i~~~~~~-------~-~--~~~~~--~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~~~~ 121 (289)
T cd00200 59 ASADG--TYL-ASGSSDKTIRLWDLETG-------E-C--VRTLT--GHTSYVSSVAFSPD-GRILSSSS-RDKTIKVWD 121 (289)
T ss_pred ECCCC--CEE-EEEcCCCeEEEEEcCcc-------c-c--eEEEe--ccCCcEEEEEEcCC-CCEEEEec-CCCeEEEEE
Confidence 35555 345 66678999999998642 0 0 01111 12236888999987 45666665 444444444
Q ss_pred CC-CCcccceeeeccccCCCceeEeeEEecCCCceEEEee-cCceEEeecCC
Q psy11311 448 SG-MSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT-ALNIKIYQLRP 497 (499)
Q Consensus 448 ~~-G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT-~~fVKIYDLs~ 497 (499)
-+ +. ....+. .....|..+.|-|..+ .|+..+ +..|+|||+..
T Consensus 122 ~~~~~-----~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 122 VETGK-----CLTTLR-GHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CCCcE-----EEEEec-cCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccc
Confidence 43 33 222222 2356799999999833 566666 89999999863
No 10
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.21 E-value=0.49 Score=53.62 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=87.2
Q ss_pred ccccceeeeeeccCcccccceEEEEeecCCeEEEee--hhhhcccccccccccccccccccc----cceeEEEeeecCCC
Q psy11311 356 NNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQ--LSGLLKQIDSSKRKLTLIKLASVS----LPITILSVEANPCN 429 (499)
Q Consensus 356 ~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllq--ls~LLkqadss~~Kltl~rLs~~~----VpF~Vlsl~~NP~n 429 (499)
...|+.+..+.++.-.+++..++|| .-.-+++||+ +..++.-....+-++...||...+ =.|+.+.++|||++
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 4567778888665555666678899 7899999999 433322222333445566665444 57899999999999
Q ss_pred cceeeee---ccceeEEEEecCCCCcccceeeeccccCCC----------ceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 430 EELLAVC---GLKECIVFSFTSGMSQATDSITINPHCETS----------NYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 430 e~~LAV~---GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~----------~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
..-|||. |+.-.--+.-.++.. .-.+.+..... .-..++.|++... .|-|.+...+.+||+.
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r~~l~~~d~~ 232 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRK----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNRSKLMLIDFE 232 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccC----CcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcCCceEEEECC
Confidence 9999985 655433331011111 11111221111 2345899986654 7889999999999998
Q ss_pred CC
Q psy11311 497 PE 498 (499)
Q Consensus 497 ~d 498 (499)
.+
T Consensus 233 ~~ 234 (765)
T PF10214_consen 233 SN 234 (765)
T ss_pred CC
Confidence 65
No 11
>PTZ00421 coronin; Provisional
Probab=93.38 E-value=1.1 Score=48.54 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=49.7
Q ss_pred eeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcccc--eeeeccccCCCceeEeeEEecCCCceEEEee-cCceEEe
Q psy11311 418 ITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQATD--SITINPHCETSNYIIKALWIPGRQSTLAIVT-ALNIKIY 493 (499)
Q Consensus 418 F~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v~d--~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT-~~fVKIY 493 (499)
-.|..++|+|.++++||.+|.. ...|..+...|. ... .....+.- -..-|..+.|-|.....||... ...|+||
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 3599999999888888887754 344455554432 111 11112221 2567889999997655566555 4579999
Q ss_pred ecCC
Q psy11311 494 QLRP 497 (499)
Q Consensus 494 DLs~ 497 (499)
|+..
T Consensus 154 Dl~t 157 (493)
T PTZ00421 154 DVER 157 (493)
T ss_pred ECCC
Confidence 9975
No 12
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.78 E-value=1.6 Score=49.06 Aligned_cols=114 Identities=9% Similarity=0.128 Sum_probs=69.1
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecC
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTS 448 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~ 448 (499)
+|.| .++|.+++.++|-|.++...+..... .. .+.....-...|.+++++|....+||.+|+. -.|.-.+-
T Consensus 492 s~dg---~~latgg~D~~I~iwd~~~~~~~~~~----~~-~~~~~~~~~~~v~~l~~~~~~~~~las~~~D-g~v~lWd~ 562 (793)
T PLN00181 492 DRDG---EFFATAGVNKKIKIFECESIIKDGRD----IH-YPVVELASRSKLSGICWNSYIKSQVASSNFE-GVVQVWDV 562 (793)
T ss_pred CCCC---CEEEEEeCCCEEEEEECCcccccccc----cc-cceEEecccCceeeEEeccCCCCEEEEEeCC-CeEEEEEC
Confidence 5544 35588899999999998664321110 00 0111111134688999999988899988875 33333332
Q ss_pred C-CCcccceeeeccccCCCceeEeeEEecCCCceEEEeec-CceEEeecCC
Q psy11311 449 G-MSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTA-LNIKIYQLRP 497 (499)
Q Consensus 449 ~-G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~-~fVKIYDLs~ 497 (499)
. |. ....+.- -...|..+.|-|.....|+.... ..|+|||+..
T Consensus 563 ~~~~-----~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 563 ARSQ-----LVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred CCCe-----EEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 2 33 2222221 25789999999865555655554 5799999864
No 13
>KOG4460|consensus
Probab=92.68 E-value=0.48 Score=52.82 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=65.5
Q ss_pred ccccccceeEEEeeecCCCcceeeeeccceeEEEEe----cCCCCcccce------eeeccccC-----CCceeEeeEEe
Q psy11311 411 LASVSLPITILSVEANPCNEELLAVCGLKECIVFSF----TSGMSQATDS------ITINPHCE-----TSNYIIKALWI 475 (499)
Q Consensus 411 Ls~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti----~~~G~~v~d~------l~i~l~l~-----~~~fIik~~Wi 475 (499)
+-...|-|+|-.+..||.. ...|..|.+---|+.+ +.+|+ +-|. .++.+..+ +..=++++.|=
T Consensus 97 ~P~~~V~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~-~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WH 174 (741)
T KOG4460|consen 97 LPINPVLFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSE-FEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWH 174 (741)
T ss_pred ccCCcceEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccce-ecCCCceEEEEeecccceeeccCCceeeeecccc
Confidence 3467899999999999987 7889999998778776 77777 7776 12222221 34668999999
Q ss_pred cCC--CceEEEeecC-ceEEeecCCC
Q psy11311 476 PGR--QSTLAIVTAL-NIKIYQLRPE 498 (499)
Q Consensus 476 pgs--q~~LAVvT~~-fVKIYDLs~d 498 (499)
|.| -+.|-|.|++ -|+|||||++
T Consensus 175 P~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 175 PSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CCccCCceEEEEecCcEEEEEecCCc
Confidence 999 6677777765 5799999987
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.83 E-value=2.1 Score=42.06 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=65.4
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccce--eEEEEe
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKE--CIVFSF 446 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glke--C~Vlti 446 (499)
+|.|+ .|++.....|+|.++++.. +- ...+++...+.......++++|.. ++|.|+.+.+ -.|+.+
T Consensus 88 ~~~g~--~l~v~~~~~~~v~v~~~~~-----~g----~~~~~~~~~~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 88 DHQGR--FLFSASYNANCVSVSPLDK-----DG----IPVAPIQIIEGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCC--EEEEEEcCCCeEEEEEECC-----CC----CCCCceeeccCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEE
Confidence 56553 4544444588999998841 10 000111111111234556788854 7888887764 455666
Q ss_pred cCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEee--cCceEEeecCC
Q psy11311 447 TSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT--ALNIKIYQLRP 497 (499)
Q Consensus 447 ~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT--~~fVKIYDLs~ 497 (499)
+..|. +..+.........|.-.+.+.|-|+.+ .|.|+. ...|.+||+..
T Consensus 156 ~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 156 SDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CCCCc-ccccCCCceecCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeC
Confidence 66676 543222222233455567788888755 566665 58999999863
No 15
>PTZ00421 coronin; Provisional
Probab=91.75 E-value=2.1 Score=46.43 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=65.0
Q ss_pred EEEEeecCCeEEEeehhh--hcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcc
Q psy11311 377 LVAVSHEKGKITLLQLSG--LLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQA 453 (499)
Q Consensus 377 LvAVshEk~KVtllqls~--LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v 453 (499)
++|.+.+.++|.|.++.. +... ... .+..|. .-.-.|..|+|+|..+++||.+|.. ...|.-+.. |+ .
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~--~~~---~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~-~ 160 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQN--ISD---PIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK-A 160 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccc--cCc---ceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce-E
Confidence 347777999999999853 1110 000 011111 1235688999999988899988875 344555543 44 2
Q ss_pred cceeeeccccCCCceeEeeEEecCCCceEEEee-cCceEEeecCC
Q psy11311 454 TDSITINPHCETSNYIIKALWIPGRQSTLAIVT-ALNIKIYQLRP 497 (499)
Q Consensus 454 ~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT-~~fVKIYDLs~ 497 (499)
.. .+.. -...|..+.|-|... .||... ...|+|||+..
T Consensus 161 ~~----~l~~-h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 161 VE----VIKC-HSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EE----EEcC-CCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence 21 1211 256799999999754 455444 45899999864
No 16
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=91.74 E-value=2.4 Score=40.00 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=65.6
Q ss_pred hccccceeeeeeccCcccccceEEEEee-c-CCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcce
Q psy11311 355 SNNSIRRTCMCILSSPQSKRQHLVAVSH-E-KGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEEL 432 (499)
Q Consensus 355 s~~~irR~amc~L~sp~g~rq~LvAVsh-E-k~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~ 432 (499)
..|.|+.++- ||.| .++ ||.+ + ..+|+|+++. .+...++.. . .+-.|.+||.. +|
T Consensus 58 ~~~~I~~~~W----sP~g--~~f-avi~g~~~~~v~lyd~~--------~~~i~~~~~---~----~~n~i~wsP~G-~~ 114 (194)
T PF08662_consen 58 KEGPIHDVAW----SPNG--NEF-AVIYGSMPAKVTLYDVK--------GKKIFSFGT---Q----PRNTISWSPDG-RF 114 (194)
T ss_pred CCCceEEEEE----CcCC--CEE-EEEEccCCcccEEEcCc--------ccEeEeecC---C----CceEEEECCCC-CE
Confidence 4556766554 7766 456 5443 2 3489999994 111222322 1 22358899986 89
Q ss_pred eeeecccee----EEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEee------cCceEEeecC
Q psy11311 433 LAVCGLKEC----IVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT------ALNIKIYQLR 496 (499)
Q Consensus 433 LAV~GlkeC----~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT------~~fVKIYDLs 496 (499)
||++|+.+. .++-++. .+ ..... ....+..+.|=|...--+..+| ..-+|||+..
T Consensus 115 l~~~g~~n~~G~l~~wd~~~-~~-----~i~~~---~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRK-KK-----KISTF---EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEccCCCcEEEEEECCC-CE-----Eeecc---ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999865 4444432 22 11111 1234689999999885444444 3568999875
No 17
>PTZ00420 coronin; Provisional
Probab=91.74 E-value=2.7 Score=46.86 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=64.3
Q ss_pred eeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeecc-ceeE
Q psy11311 364 MCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGL-KECI 442 (499)
Q Consensus 364 mc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Gl-keC~ 442 (499)
.++.-+|.+ ..++|.+...+.|.|.++..--. ..++ ..+..|.+|+++|.. .+||+++. +.++
T Consensus 129 ~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~-------~~~i------~~~~~V~SlswspdG-~lLat~s~D~~Ir 192 (568)
T PTZ00420 129 SIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKR-------AFQI------NMPKKLSSLKWNIKG-NLLSGTCVGKHMH 192 (568)
T ss_pred EEEEECCCC--CeEEEEEeCCCeEEEEECCCCcE-------EEEE------ecCCcEEEEEECCCC-CEEEEEecCCEEE
Confidence 344447765 34556667889999999853210 1111 124568999999975 56665542 2455
Q ss_pred EEEecCCCCcccceeeeccccCCCceeEeeEEecC---CCceEEEeecC-----ceEEeecCC
Q psy11311 443 VFSFTSGMSQATDSITINPHCETSNYIIKALWIPG---RQSTLAIVTAL-----NIKIYQLRP 497 (499)
Q Consensus 443 Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipg---sq~~LAVvT~~-----fVKIYDLs~ 497 (499)
|+-+.. |+ +. ..+....|.-..++.|+.+ ....|+.+..+ .|+|||+..
T Consensus 193 IwD~Rs-g~-~i----~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 193 IIDPRK-QE-IA----SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEECCC-Cc-EE----EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 555443 44 22 2333334555667889832 22345444433 699999874
No 18
>KOG0269|consensus
Probab=90.51 E-value=0.89 Score=52.22 Aligned_cols=141 Identities=23% Similarity=0.349 Sum_probs=99.9
Q ss_pred cCCCCcccc--ccccccCCCcchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccc
Q psy11311 328 MGSQEGAFE--NVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRK 405 (499)
Q Consensus 328 ~gsqeGafe--nVr~~~~g~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~K 405 (499)
-|||-|.-. .+|-+ +.-+|-|. ++-+||-|.||- +-.-.+.|+ ||+|-+-+.+|.+ +++
T Consensus 151 SGSQDg~vK~~DlR~~---~S~~t~~~--nSESiRDV~fsp-----~~~~~F~s~-~dsG~lqlWDlRq--------p~r 211 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSK---KSKSTFRS--NSESIRDVKFSP-----GYGNKFASI-HDSGYLQLWDLRQ--------PDR 211 (839)
T ss_pred ecCCCceEEEEeeecc---cccccccc--cchhhhceeecc-----CCCceEEEe-cCCceEEEeeccC--------chh
Confidence 488888643 24432 22344444 788999999998 445667555 8999999888743 223
Q ss_pred cccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEE-
Q psy11311 406 LTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAI- 484 (499)
Q Consensus 406 ltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAV- 484 (499)
.-++-.+++. +|+-+--+| |..|||-+| +|=.|-.-...+. +.--....++++=+.||.|=|..+..||.
T Consensus 212 ~~~k~~AH~G---pV~c~nwhP-nr~~lATGG-RDK~vkiWd~t~~----~~~~~~tInTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 212 CEKKLTAHNG---PVLCLNWHP-NREWLATGG-RDKMVKIWDMTDS----RAKPKHTINTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred HHHHhhcccC---ceEEEeecC-CCceeeecC-CCccEEEEeccCC----CccceeEEeecceeeeeeeccCccchhhhh
Confidence 3333334444 477788999 999999999 8877777776654 34444445578889999999999998874
Q ss_pred --eecCceEEeecC
Q psy11311 485 --VTALNIKIYQLR 496 (499)
Q Consensus 485 --vT~~fVKIYDLs 496 (499)
|..-.|.|||+.
T Consensus 283 smv~dtsV~VWDvr 296 (839)
T KOG0269|consen 283 SMVVDTSVHVWDVR 296 (839)
T ss_pred hccccceEEEEeec
Confidence 667789999985
No 19
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.36 E-value=4.2 Score=40.00 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=61.4
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeecccee--EEEEe
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKEC--IVFSF 446 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC--~Vlti 446 (499)
||.| ++|++.....+.|.++++.. ..++ +.+...+++-....|+++|.+ ++|.|+++.+= .|+-+
T Consensus 43 spd~--~~lyv~~~~~~~i~~~~~~~--------~g~l--~~~~~~~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~ 109 (330)
T PRK11028 43 SPDK--RHLYVGVRPEFRVLSYRIAD--------DGAL--TFAAESPLPGSPTHISTDHQG-RFLFSASYNANCVSVSPL 109 (330)
T ss_pred CCCC--CEEEEEECCCCcEEEEEECC--------CCce--EEeeeecCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEE
Confidence 6654 46645555678888888741 0112 222223333345789999876 78888887544 45555
Q ss_pred cCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeec---CceEEeecCC
Q psy11311 447 TSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTA---LNIKIYQLRP 497 (499)
Q Consensus 447 ~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~---~fVKIYDLs~ 497 (499)
+.+|. +...+..- +......-+.+-|..+ .++|++ +.|.|||+..
T Consensus 110 ~~~g~-~~~~~~~~---~~~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 110 DKDGI-PVAPIQII---EGLEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCC-CCCceeec---cCCCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECC
Confidence 66676 44333221 1112233345566543 333433 7799999975
No 20
>KOG0264|consensus
Probab=88.35 E-value=2.1 Score=46.29 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=69.4
Q ss_pred ceEEEEeecCCeEEEeehhhhccccccccccccccccccccc-ceeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCc
Q psy11311 375 QHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSL-PITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQ 452 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~V-pF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~ 452 (499)
..|.|-..+.+++-|.++.. . +.++-....+ .=+|-+++|||.++..||-++-. --.++-+.+
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~--~---------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---- 304 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRS--N---------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN---- 304 (422)
T ss_pred hhhheeecCCCeEEEEEcCC--C---------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh----
Confidence 44555557999999999875 1 1122222222 56889999999999988877733 222222222
Q ss_pred ccceeeeccccCCCceeEeeEEecCCCceEEEe-ecCceEEeecCC
Q psy11311 453 ATDSITINPHCETSNYIIKALWIPGRQSTLAIV-TALNIKIYQLRP 497 (499)
Q Consensus 453 v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVv-T~~fVKIYDLs~ 497 (499)
. ...+|--..-..-|-+|+|=|...+-||.. |.+-|.||||++
T Consensus 305 L--~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 305 L--NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred c--ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 0 112222222357789999999999988875 667899999986
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.75 E-value=6.5 Score=36.21 Aligned_cols=112 Identities=9% Similarity=0.126 Sum_probs=58.7
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeee--ccceeEEEEe
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVC--GLKECIVFSF 446 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~--GlkeC~Vlti 446 (499)
+|.| +.|++.+..+++|.++++..-- ..+.++...-...+.++....++++|-.. ++.|. +-...+|+..
T Consensus 165 s~dg--~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 165 TADG--KELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPANRVAVVDA 236 (300)
T ss_pred CCCC--CEEEEEcCCCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECCCCC-EEEEEcCCCCeEEEEEC
Confidence 5555 3453333358899999986421 01112211111112233445677887764 44443 3333444444
Q ss_pred cCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEee--cCceEEeecCC
Q psy11311 447 TSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT--ALNIKIYQLRP 497 (499)
Q Consensus 447 ~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT--~~fVKIYDLs~ 497 (499)
. .|+ +...+ ..+..+..+.|-|..+ .|++.. ..-|+|||+..
T Consensus 237 ~-~~~-~~~~~------~~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 237 K-TYE-VLDYL------LVGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred C-CCc-EEEEE------EeCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCC
Confidence 3 345 43322 1245677889998866 455432 46799999864
No 22
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.89 E-value=11 Score=38.18 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=75.9
Q ss_pred ccceEEEEee---cCCeEEEeehhhhcccccccccccccccccccc-cceeEEEeeecCCCcceeeeeccc--eeEEEEe
Q psy11311 373 KRQHLVAVSH---EKGKITLLQLSGLLKQIDSSKRKLTLIKLASVS-LPITILSVEANPCNEELLAVCGLK--ECIVFSF 446 (499)
Q Consensus 373 ~rq~LvAVsh---Ek~KVtllqls~LLkqadss~~Kltl~rLs~~~-VpF~Vlsl~~NP~ne~~LAV~Glk--eC~Vlti 446 (499)
.++.|+|+.. +.+.|+.+.+..- .-+|+.+++.+ .+-.-.+++.+|.. ++|.|+-|. .-.|+.+
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~---------~g~L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPD---------TGTLTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETT---------TTEEEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCC---------cceeEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEc
Confidence 3466777753 2578888877431 13455566655 56666788888876 899999876 5666889
Q ss_pred cCCCCcccceeeec--------cccCCCceeEeeEEecCCCceEEEee---cCceEEeecCCC
Q psy11311 447 TSGMSQATDSITIN--------PHCETSNYIIKALWIPGRQSTLAIVT---ALNIKIYQLRPE 498 (499)
Q Consensus 447 ~~~G~~v~d~l~i~--------l~l~~~~fIik~~Wipgsq~~LAVvT---~~fVKIYDLs~d 498 (499)
+.+|. +.....+. +..+.+...-.+.|-|..+ .| +|+ ++-|.+|++..+
T Consensus 117 ~~~g~-l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v-~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 117 DDDGS-LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FV-YVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp CTTSE-EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EE-EEEETTTTEEEEEEE-TT
T ss_pred cCCcc-cceeeeecccCCCCCcccccccccceeEEECCCCC-EE-EEEecCCCEEEEEEEeCC
Confidence 99898 77765422 2234578888899999855 33 344 788999998754
No 23
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=86.58 E-value=0.7 Score=33.40 Aligned_cols=27 Identities=33% Similarity=0.700 Sum_probs=24.3
Q ss_pred ceeeccCCCCCCCceeehhhhhhhcCCCeEE
Q psy11311 77 HWYHCHTCKMIDGVGVCSVCAQVCHKNHDIT 107 (499)
Q Consensus 77 ~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLv 107 (499)
.-|.|.+|. ..+|..|...=|+||+++
T Consensus 14 ~~~~C~~C~----~~~C~~C~~~~H~~H~~~ 40 (42)
T PF00643_consen 14 LSLFCEDCN----EPLCSECTVSGHKGHKIV 40 (42)
T ss_dssp EEEEETTTT----EEEEHHHHHTSTTTSEEE
T ss_pred eEEEecCCC----CccCccCCCCCCCCCEEe
Confidence 789999998 489999998889999985
No 24
>KOG0310|consensus
Probab=84.26 E-value=4.3 Score=44.64 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=67.5
Q ss_pred ceEEEEeecCCeEEEeehhh--hcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCc
Q psy11311 375 QHLVAVSHEKGKITLLQLSG--LLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQ 452 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~--LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~ 452 (499)
++|+|.-.|-|+|-|++... +|-|-.++ . ++|=.+-|.|.. +-++|.|=.+=.+.-..-++.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah------------~--apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a- 143 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAH------------Q--APVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTA- 143 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhc------------c--CceeEEEecccC-CeEEEecCCCceEEEEEcCCc-
Confidence 67889999999999999766 55443332 2 344455677776 556666666655555554444
Q ss_pred ccceeeeccccCCCceeEeeEEecCCCceEEEeec---CceEEeecCC
Q psy11311 453 ATDSITINPHCETSNYIIKALWIPGRQSTLAIVTA---LNIKIYQLRP 497 (499)
Q Consensus 453 v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~---~fVKIYDLs~ 497 (499)
.+ +++++-- ..|++...|+|+.. =+|+|- -+||.||+..
T Consensus 144 ~v---~~~l~~h-tDYVR~g~~~~~~~--hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 144 YV---QAELSGH-TDYVRCGDISPAND--HIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred EE---EEEecCC-cceeEeeccccCCC--eEEEecCCCceEEEEEecc
Confidence 21 3333332 68999999999944 567774 5899999854
No 25
>KOG4378|consensus
Probab=83.82 E-value=5.2 Score=44.72 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=57.1
Q ss_pred cccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCC
Q psy11311 372 SKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMS 451 (499)
Q Consensus 372 g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~ 451 (499)
++|-+| ..+.++|-|||.++...=. +......-++|. -.|.|+|.||.+|+-.|| ||+|.++..+-.
T Consensus 175 skr~lL-~~asd~G~VtlwDv~g~sp-------~~~~~~~HsAP~----~gicfspsne~l~vsVG~-Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 175 SKRFLL-SIASDKGAVTLWDVQGMSP-------IFHASEAHSAPC----RGICFSPSNEALLVSVGY-DKKINIYDIRSQ 241 (673)
T ss_pred ccceee-EeeccCCeEEEEeccCCCc-------ccchhhhccCCc----CcceecCCccceEEEecc-cceEEEeecccc
Confidence 456666 5557999999999854322 233333333333 367899999999999999 689988888766
Q ss_pred cccceeeeccccC
Q psy11311 452 QATDSITINPHCE 464 (499)
Q Consensus 452 ~v~d~l~i~l~l~ 464 (499)
.-+|+|+-+--|-
T Consensus 242 ~s~~~l~y~~Pls 254 (673)
T KOG4378|consen 242 ASTDRLTYSHPLS 254 (673)
T ss_pred cccceeeecCCcc
Confidence 6788888765554
No 26
>PTZ00420 coronin; Provisional
Probab=83.67 E-value=5.4 Score=44.54 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=49.9
Q ss_pred eeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcccceeeecc--ccC-CCceeEeeEEecCCCceEEEe-ecCceEE
Q psy11311 418 ITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQATDSITINP--HCE-TSNYIIKALWIPGRQSTLAIV-TALNIKI 492 (499)
Q Consensus 418 F~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l--~l~-~~~fIik~~Wipgsq~~LAVv-T~~fVKI 492 (499)
-.|..++|+|.++++||.+|.. ...|..+...++ ....+. ++ .+. -...|..+.|-|..+..||.. ....|+|
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~-~~~~i~-~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE-SVKEIK-DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc-cccccc-cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 4799999999988888888753 344555554443 221110 11 111 246799999999765444433 3568999
Q ss_pred eecCC
Q psy11311 493 YQLRP 497 (499)
Q Consensus 493 YDLs~ 497 (499)
||+..
T Consensus 153 WDl~t 157 (568)
T PTZ00420 153 WDIEN 157 (568)
T ss_pred EECCC
Confidence 99975
No 27
>KOG0279|consensus
Probab=83.39 E-value=3.9 Score=42.75 Aligned_cols=137 Identities=15% Similarity=0.213 Sum_probs=85.2
Q ss_pred cccccCCCCccccccccccCCCcchhHHHHHhccccceeeeeeccCcccccceEEEEeec-CCeEEEeehhhhccccccc
Q psy11311 324 MVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHE-KGKITLLQLSGLLKQIDSS 402 (499)
Q Consensus 324 m~p~~gsqeGafenVr~~~~g~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshE-k~KVtllqls~LLkqadss 402 (499)
++-.|.+.+..|-++.-.|.|- +|.|..+++.- .| + . |+|.- .+.+-+-+|.+ ..
T Consensus 41 i~W~L~~dd~~~G~~~r~~~GH----------sH~v~dv~~s~----dg--~-~-alS~swD~~lrlWDl~~------g~ 96 (315)
T KOG0279|consen 41 IVWKLTSDDIKYGVPVRRLTGH----------SHFVSDVVLSS----DG--N-F-ALSASWDGTLRLWDLAT------GE 96 (315)
T ss_pred EEEEeccCccccCceeeeeecc----------ceEecceEEcc----CC--c-e-EEeccccceEEEEEecC------Cc
Confidence 4556666666676666666652 45555554433 22 2 3 44433 33344444422 10
Q ss_pred ccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCC-CceeEeeEEecCCCce
Q psy11311 403 KRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCET-SNYIIKALWIPGRQST 481 (499)
Q Consensus 403 ~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~-~~fIik~~Wipgsq~~ 481 (499)
++.--..-.-.|+++++||-| ==+|.|.+|--|.--|-.|+ ..++..-+. .+.+.++.|.|-.-.-
T Consensus 97 ------~t~~f~GH~~dVlsva~s~dn--~qivSGSrDkTiklwnt~g~-----ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 97 ------STRRFVGHTKDVLSVAFSTDN--RQIVSGSRDKTIKLWNTLGV-----CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ------EEEEEEecCCceEEEEecCCC--ceeecCCCcceeeeeeeccc-----EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 111111223469999999977 45799999999999998888 666666665 7999999999995322
Q ss_pred EEEee--cCceEEeecCC
Q psy11311 482 LAIVT--ALNIKIYQLRP 497 (499)
Q Consensus 482 LAVvT--~~fVKIYDLs~ 497 (499)
+.|-+ ...||||||..
T Consensus 164 ~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRN 181 (315)
T ss_pred EEEEccCCceEEEEccCC
Confidence 22222 35899999964
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.61 E-value=11 Score=42.36 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=57.4
Q ss_pred EEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccce
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDS 456 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~ 456 (499)
++|.....+.|.|.++..- ..-.++ ...-.|.++.++|.+..+||+++ .+..|...+-+.. +
T Consensus 590 ~L~Sgs~Dg~v~iWd~~~~-------~~~~~~------~~~~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~----~ 651 (793)
T PLN00181 590 LLASGSDDGSVKLWSINQG-------VSIGTI------KTKANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNP----K 651 (793)
T ss_pred EEEEEcCCCEEEEEECCCC-------cEEEEE------ecCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCC----C
Confidence 4466667778888877421 000111 11235788999888778888766 4445555543221 1
Q ss_pred eeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 457 ITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 457 l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
..+.....-..-|..+.|.++. ..++..+...|||||+.+
T Consensus 652 ~~~~~~~~h~~~V~~v~f~~~~-~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFVDSS-TLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred ccceEecCCCCCEEEEEEeCCC-EEEEEECCCEEEEEeCCC
Confidence 1111001124568889998653 334444567899999863
No 29
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=82.40 E-value=6.6 Score=37.11 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=50.9
Q ss_pred EEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEee----cCceEEeec
Q psy11311 420 ILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT----ALNIKIYQL 495 (499)
Q Consensus 420 Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT----~~fVKIYDL 495 (499)
|..++.+|-.+.|+++.|..+..|..++-+++ ...++ . ...++.+.|=|..+ .|++.. +..|.|||.
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-----~i~~~--~-~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-----KIFSF--G-TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCccc-----EeEee--c-CCCceEEEECCCCC-EEEEEEccCCCcEEEEEEC
Confidence 99999999998888888987777777777777 22222 2 45667899999966 566554 235999998
Q ss_pred CC
Q psy11311 496 RP 497 (499)
Q Consensus 496 s~ 497 (499)
.+
T Consensus 133 ~~ 134 (194)
T PF08662_consen 133 RK 134 (194)
T ss_pred CC
Confidence 64
No 30
>KOG0290|consensus
Probab=79.06 E-value=6.7 Score=41.47 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=75.5
Q ss_pred cccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCC
Q psy11311 372 SKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMS 451 (499)
Q Consensus 372 g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~ 451 (499)
|.|+.+.-| +..|.|-+|+|..|--..=.=. .|-. .-+.+.|+.|+.+.+|+|-.+-..++|..+.=+-.
T Consensus 207 ~s~~~FASv-gaDGSvRmFDLR~leHSTIIYE-----~p~~----~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 207 GSRDVFASV-GADGSVRMFDLRSLEHSTIIYE-----DPSP----STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred CccceEEEe-cCCCcEEEEEecccccceEEec-----CCCC----CCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 668888445 7999999999977643100000 0110 33578999999999999999988777666554321
Q ss_pred cccceeeeccccCCCceeEeeEEecCCCceEEEeecC-ceEEeecCC
Q psy11311 452 QATDSITINPHCETSNYIIKALWIPGRQSTLAIVTAL-NIKIYQLRP 497 (499)
Q Consensus 452 ~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~-fVKIYDLs~ 497 (499)
---+.+|+.- ..=++-+-|-|+|...|.-.-.+ .+-||||.+
T Consensus 277 ---~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 277 ---CTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---CcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 2244455443 67788899999999887655444 577999975
No 31
>smart00336 BBOX B-Box-type zinc finger.
Probab=77.95 E-value=1.6 Score=30.89 Aligned_cols=29 Identities=21% Similarity=0.688 Sum_probs=24.4
Q ss_pred ccceeeccCCCCCCCceeehhhhhhhcCCCeEE
Q psy11311 75 NQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDIT 107 (499)
Q Consensus 75 rQ~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLv 107 (499)
....|.|.+|. ..||..|...-|+||.++
T Consensus 12 ~~~~~~C~~c~----~~iC~~C~~~~H~~H~~~ 40 (42)
T smart00336 12 EPAEFFCEECG----ALLCRTCDEAEHRGHTVV 40 (42)
T ss_pred CceEEECCCCC----cccccccChhhcCCCcee
Confidence 55588899988 489999998899999874
No 32
>KOG1274|consensus
Probab=77.05 E-value=5.6 Score=46.67 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=52.9
Q ss_pred cceeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcccceee-eccccCC--CceeEeeEEecCCCceEEEeecCceE
Q psy11311 416 LPITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQATDSIT-INPHCET--SNYIIKALWIPGRQSTLAIVTALNIK 491 (499)
Q Consensus 416 VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v~d~l~-i~l~l~~--~~fIik~~Wipgsq~~LAVvT~~fVK 491 (499)
.-=+|++|.++|.+ +||||.-.. ..+|+.|.. |. +.--+. |-+.++. .--++++.|=|.+-..+++-+..+||
T Consensus 137 h~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~-~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQD-GI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred cCCceeeeeEcCCC-CEEEEEecCceEEEEEccc-ch-hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 34578999999987 899998665 667776664 33 111111 1111111 23458899999998888999999999
Q ss_pred EeecC
Q psy11311 492 IYQLR 496 (499)
Q Consensus 492 IYDLs 496 (499)
+|+-.
T Consensus 214 vy~r~ 218 (933)
T KOG1274|consen 214 VYSRK 218 (933)
T ss_pred EEccC
Confidence 99853
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=76.54 E-value=24 Score=32.49 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=56.0
Q ss_pred EEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCC-CCcccc
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSG-MSQATD 455 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~-G~~v~d 455 (499)
+++.....++|.++++... +...++ .. ...+.+++++|-. ++|++++..+-.|..++.. |+ +..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-------~~~~~~---~~---~~~~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~-~~~ 67 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-------EVTRTF---PV---GQRPRGITLSKDG-KLLYVCASDSDTIQVIDLATGE-VIG 67 (300)
T ss_pred EEEEecCCCEEEEEECCCC-------ceEEEE---EC---CCCCCceEECCCC-CEEEEEECCCCeEEEEECCCCc-EEE
Confidence 4455567788888887421 111111 11 1123468888865 5676666666667667654 44 332
Q ss_pred eeeeccccCCCceeEeeEEecCCCceEEEee--cCceEEeecCC
Q psy11311 456 SITINPHCETSNYIIKALWIPGRQSTLAIVT--ALNIKIYQLRP 497 (499)
Q Consensus 456 ~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT--~~fVKIYDLs~ 497 (499)
.+. .+.-...+.|-|..+ .|+++. ...|++||+..
T Consensus 68 ~~~------~~~~~~~~~~~~~g~-~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 68 TLP------SGPDPELFALHPNGK-ILYIANEDDNLVTVIDIET 104 (300)
T ss_pred ecc------CCCCccEEEECCCCC-EEEEEcCCCCeEEEEECCC
Confidence 221 122245578888865 455553 35799999864
No 34
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=71.95 E-value=2.8 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=23.5
Q ss_pred cceeeccCCCCCCCceeehhhhhhhcCCCeEEE
Q psy11311 76 QHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITY 108 (499)
Q Consensus 76 Q~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLvy 108 (499)
...|.|.+|. ..||..|...=|+||..+.
T Consensus 10 ~~~~fC~~~~----~~iC~~C~~~~H~~H~~~~ 38 (39)
T cd00021 10 PLSLFCETDR----ALLCVDCDLSVHSGHRRVP 38 (39)
T ss_pred ceEEEeCccC----hhhhhhcChhhcCCCCEee
Confidence 5578899987 5799999855599999863
No 35
>KOG0650|consensus
Probab=70.09 E-value=9.9 Score=43.30 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=79.2
Q ss_pred CcchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeeh-----------hhhcccc--cccc-------c
Q psy11311 345 DQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQL-----------SGLLKQI--DSSK-------R 404 (499)
Q Consensus 345 ~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllql-----------s~LLkqa--dss~-------~ 404 (499)
..|.-||...--+.||.+|.+=+ ++ --+|||+ -++++-|++- -.||..+ ++.+ +
T Consensus 430 ~TgRcvr~~~~d~~I~~vaw~P~----~~-~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 430 ATGRCVRTVQFDSEIRSVAWNPL----SD-LCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWS 503 (733)
T ss_pred ecceEEEEEeecceeEEEEecCC----CC-ceeEEEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeec
Confidence 45777777777778877776654 44 4466998 4444655541 1233221 1111 2
Q ss_pred cccccccccc-----ccceeEEEeeecCCCcceeeeecc----ceeEEEEecCCCCcccceeeeccccCCCceeEeeEEe
Q psy11311 405 KLTLIKLASV-----SLPITILSVEANPCNEELLAVCGL----KECIVFSFTSGMSQATDSITINPHCETSNYIIKALWI 475 (499)
Q Consensus 405 Kltl~rLs~~-----~VpF~Vlsl~~NP~ne~~LAV~Gl----keC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wi 475 (499)
+-.+..+... ..+-+|-+|..-- ..+|||++-. +...|+-++..-. ..|---.+.-|.+|-.=
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~s-------Q~PF~kskG~vq~v~FH 575 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKS-------QSPFRKSKGLVQRVKFH 575 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccc-------cCchhhcCCceeEEEec
Confidence 2222233322 2233344444432 3488888765 6777777766444 12222235666777766
Q ss_pred cCCCceEEEeecCceEEeecCC
Q psy11311 476 PGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 476 pgsq~~LAVvT~~fVKIYDLs~ 497 (499)
|- +-+|-|.|...|+||||++
T Consensus 576 Ps-~p~lfVaTq~~vRiYdL~k 596 (733)
T KOG0650|consen 576 PS-KPYLFVATQRSVRIYDLSK 596 (733)
T ss_pred CC-CceEEEEeccceEEEehhH
Confidence 65 4589999999999999986
No 36
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.19 E-value=22 Score=38.58 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=26.2
Q ss_pred ccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEE
Q psy11311 401 SSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFS 445 (499)
Q Consensus 401 ss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlt 445 (499)
...-.++++.+.+..++ .-+|..|| |+.|++|||=.+=.|+|
T Consensus 18 g~~~~l~~k~lg~~~~~--p~~ls~np-ngr~v~V~g~geY~iyt 59 (443)
T PF04053_consen 18 GERLPLSVKELGSCEIY--PQSLSHNP-NGRFVLVCGDGEYEIYT 59 (443)
T ss_dssp TS-B----EEEEE-SS----SEEEE-T-TSSEEEEEETTEEEEEE
T ss_pred CceeeEEeccCCCCCcC--CeeEEECC-CCCEEEEEcCCEEEEEE
Confidence 33334667777766554 56777888 67999999999999998
No 37
>KOG0321|consensus
Probab=66.63 E-value=9.4 Score=43.62 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=25.4
Q ss_pred eeeccCcccccceEEEEeecCCeEEEeehhhhc
Q psy11311 364 MCILSSPQSKRQHLVAVSHEKGKITLLQLSGLL 396 (499)
Q Consensus 364 mc~L~sp~g~rq~LvAVshEk~KVtllqls~LL 396 (499)
+++=.+++-+-.|++||+-|.|+|+|++..+.-
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~ 85 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV 85 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh
Confidence 444455666778888999999999999886544
No 38
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=66.20 E-value=13 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.2
Q ss_pred CceeEeeEEecCCCceEEEeecCceEEee
Q psy11311 466 SNYIIKALWIPGRQSTLAIVTALNIKIYQ 494 (499)
Q Consensus 466 ~~fIik~~Wipgsq~~LAVvT~~fVKIYD 494 (499)
...|..+.|-|..+.-++.-....|+|||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999966555555568999998
No 39
>KOG1140|consensus
Probab=65.74 E-value=2.5 Score=52.48 Aligned_cols=64 Identities=27% Similarity=0.587 Sum_probs=47.5
Q ss_pred ccccceeeccCCCCCCCceeehhhhhhhcCCCeEE---EeecCceEeeCCCCC----CCcceecccCCCCCC
Q psy11311 73 FMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDIT---YSKFGNFFCDCGAKE----NGQCLALTKRNPQES 137 (499)
Q Consensus 73 ~irQ~~Y~C~TC~~~~~~gIC~aCA~vCH~GHdLv---y~K~r~F~CDCG~~k----~~~Ckll~~K~~~~~ 137 (499)
.+-|..|.|++|..++..-+|..| ..-|..|-+. -+......||||+.. ...|....+++-..+
T Consensus 21 ~~~e~~y~c~~c~~~~~~~~c~~c-~~~~~~~~~~~~v~~~~~~~~c~cgd~da~n~~~~~~~~~~~~~~~~ 91 (1738)
T KOG1140|consen 21 KIGEPTYRCHECGTDDTCVLCIHC-PEVHVNHSVCTKVHTEFTSGICDCGDEDAWNSPLHCKAEEQEDDISE 91 (1738)
T ss_pred ccCCceEEEEecCCCcchhHHHhc-chhhhhhhhcceeEecccccccCCCChhhccCcchHHHHhcccccch
Confidence 368999999999998888888888 4557777765 333467799999987 345666666654443
No 40
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=63.88 E-value=1.1e+02 Score=29.40 Aligned_cols=147 Identities=12% Similarity=0.183 Sum_probs=85.2
Q ss_pred cCCCCcccc-ccccccCCCcchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhccccccc---c
Q psy11311 328 MGSQEGAFE-NVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSS---K 403 (499)
Q Consensus 328 ~gsqeGafe-nVr~~~~g~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss---~ 403 (499)
+|+.+|.|- ++ +++...++.+..-.|.+.. ++ ..-+.|++++ ++.+.+++|..|....... .
T Consensus 12 vGt~~Gl~~~~~------~~~~~~~~i~~~~~I~ql~--vl----~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 12 VGTEDGLYVYDL------SDPSKPTRILKLSSITQLS--VL----PELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred EEECCCEEEEEe------cCCccceeEeecceEEEEE--Ee----cccCEEEEEc--CCccEEEEchhhccccccccccc
Confidence 356778765 32 4556666666555555443 33 1234565664 4999999999988754321 1
Q ss_pred ccc---c-cccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCC
Q psy11311 404 RKL---T-LIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQ 479 (499)
Q Consensus 404 ~Kl---t-l~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq 479 (499)
.|- . --+..+..--|. ...-+.+..+|+|+==|.-+|++......... +..-|+.+. .-+..+.|+ .
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp--~~~~~i~~~---~ 148 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLP--DPPSSIAFL---G 148 (275)
T ss_pred cccccccccccccCCeeEEe---eccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcC--CCcEEEEEe---C
Confidence 111 0 011112222222 33445566677777777888888887422121 333344443 456678888 3
Q ss_pred ceEEEeecCceEEeecCC
Q psy11311 480 STLAIVTALNIKIYQLRP 497 (499)
Q Consensus 480 ~~LAVvT~~fVKIYDLs~ 497 (499)
..|.|.+.+-.-++|+.+
T Consensus 149 ~~i~v~~~~~f~~idl~~ 166 (275)
T PF00780_consen 149 NKICVGTSKGFYLIDLNT 166 (275)
T ss_pred CEEEEEeCCceEEEecCC
Confidence 489999999999999984
No 41
>KOG0318|consensus
Probab=62.54 E-value=66 Score=36.52 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=67.3
Q ss_pred eeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEE
Q psy11311 365 CILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIV 443 (499)
Q Consensus 365 c~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~V 443 (499)
|+..+|.+ ..+||-++.+||-|+.|+..--- +.. .+-....+.+++ +++| +..|||+|-.. ...+
T Consensus 448 ~vAv~~~~---~~vaVGG~Dgkvhvysl~g~~l~---ee~-----~~~~h~a~iT~v--aySp-d~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 448 AVAVSPDG---SEVAVGGQDGKVHVYSLSGDELK---EEA-----KLLEHRAAITDV--AYSP-DGAYLAAGDASRKVVL 513 (603)
T ss_pred eEEEcCCC---CEEEEecccceEEEEEecCCccc---cee-----eeecccCCceEE--EECC-CCcEEEEeccCCcEEE
Confidence 44446644 46799999999999988763210 011 111223444444 4555 36999999875 5555
Q ss_pred EEecCCCCcccceeeeccccCC--CceeEeeEEecCCCceEEEeec---CceEEeecCC
Q psy11311 444 FSFTSGMSQATDSITINPHCET--SNYIIKALWIPGRQSTLAIVTA---LNIKIYQLRP 497 (499)
Q Consensus 444 lti~~~G~~v~d~l~i~l~l~~--~~fIik~~Wipgsq~~LAVvT~---~fVKIYDLs~ 497 (499)
+...++-. ++..+. ..=|..+-|=|.++ +|.|. ..|-||++.+
T Consensus 514 yd~~s~~~--------~~~~w~FHtakI~~~aWsP~n~---~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 514 YDVASREV--------KTNRWAFHTAKINCVAWSPNNK---LVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEcccCce--------ecceeeeeeeeEEEEEeCCCce---EEEeccccceEEEEEccC
Confidence 55555333 444442 67799999999976 44553 4688998765
No 42
>KOG0266|consensus
Probab=61.87 E-value=98 Score=33.04 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=70.3
Q ss_pred eeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEE
Q psy11311 365 CILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIV 443 (499)
Q Consensus 365 c~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~V 443 (499)
.+--||+|+ -|+.. -.+..|-|.++.. +...++.+. .-+=.|.+++|||.. ++|+-+++. .|.|
T Consensus 208 ~~~fs~d~~--~l~s~-s~D~tiriwd~~~---------~~~~~~~l~--gH~~~v~~~~f~p~g-~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 208 DVAFSPDGS--YLLSG-SDDKTLRIWDLKD---------DGRNLKTLK--GHSTYVTSVAFSPDG-NLLVSGSDDGTVRI 272 (456)
T ss_pred eeEECCCCc--EEEEe-cCCceEEEeeccC---------CCeEEEEec--CCCCceEEEEecCCC-CEEEEecCCCcEEE
Confidence 334477776 34344 4888888888711 122334443 223345999999999 777776665 7888
Q ss_pred EEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEee-cCceEEeecCCC
Q psy11311 444 FSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVT-ALNIKIYQLRPE 498 (499)
Q Consensus 444 lti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT-~~fVKIYDLs~d 498 (499)
..+.. |+ ..-.|..|= ..|. ..+.+..-..|+... ..+|+|||+.+.
T Consensus 273 Wd~~~-~~-~~~~l~~hs-----~~is-~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 273 WDVRT-GE-CVRKLKGHS-----DGIS-GLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred EeccC-Ce-EEEeeeccC-----CceE-EEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 88887 77 555554442 2344 346666555555544 789999998764
No 43
>KOG0306|consensus
Probab=61.37 E-value=49 Score=38.90 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=78.5
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccc-cccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEe
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRK-LTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSF 446 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~K-ltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti 446 (499)
+|.+++ +|-+ -+||...|=-=.|...--.+++| |.|+.--.-..+=+|+.+.++|-. .||||.=|. -|+|+-+
T Consensus 463 ~pD~~g--~vT~--saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 463 SPDNKG--FVTG--SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFL 537 (888)
T ss_pred cCCCCc--eEEe--cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEe
Confidence 566643 4334 46766554433555443344444 778777788888999999999976 888887665 5777755
Q ss_pred cCCCCcccceeeeccccCC-CceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 447 TSGMSQATDSITINPHCET-SNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 447 ~~~G~~v~d~l~i~l~l~~-~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
+. +-+-+.|.. --=++.++==|.|..-+-=....+||||-|.
T Consensus 538 Dt--------lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 538 DT--------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cc--------eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 44 888888883 3567888888987743333346899999764
No 44
>KOG0268|consensus
Probab=60.76 E-value=16 Score=39.71 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=78.2
Q ss_pred eeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeE
Q psy11311 363 CMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECI 442 (499)
Q Consensus 363 amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~ 442 (499)
..||=.+|-. .- +||++.+.+.|.|+++.+ + +||-+....-.-=.|.+|| |.|.-|+|=+||-
T Consensus 190 i~svkfNpvE-Ts-ILas~~sDrsIvLyD~R~------~-------~Pl~KVi~~mRTN~IswnP--eafnF~~a~ED~n 252 (433)
T KOG0268|consen 190 ISSVKFNPVE-TS-ILASCASDRSIVLYDLRQ------A-------SPLKKVILTMRTNTICWNP--EAFNFVAANEDHN 252 (433)
T ss_pred eeEEecCCCc-ch-heeeeccCCceEEEeccc------C-------CccceeeeeccccceecCc--cccceeecccccc
Confidence 3555556643 23 559989999999999853 2 3344444444445688999 7899999999999
Q ss_pred EEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 443 VFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 443 Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
++|+.-+-- +-.++...+-+..+..|+.=|--|.-.+=.=...|+||...
T Consensus 253 lY~~DmR~l----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 253 LYTYDMRNL----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ceehhhhhh----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 999987544 45555555567788888888876643333445678898754
No 45
>KOG0279|consensus
Probab=59.86 E-value=1.2e+02 Score=32.29 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=88.7
Q ss_pred cchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeee
Q psy11311 346 QGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEA 425 (499)
Q Consensus 346 qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~ 425 (499)
+++++++-.-.|.=--.+|.+ ||.| +|.|=.+++|++.|-+|. ++++ |-+-..--+|-+++|
T Consensus 180 ~~~~l~~~~~gh~~~v~t~~v--SpDG---slcasGgkdg~~~LwdL~--------~~k~-----lysl~a~~~v~sl~f 241 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGYVNTVTV--SPDG---SLCASGGKDGEAMLWDLN--------EGKN-----LYSLEAFDIVNSLCF 241 (315)
T ss_pred CCcchhhccccccccEEEEEE--CCCC---CEEecCCCCceEEEEEcc--------CCce-----eEeccCCCeEeeEEe
Confidence 356666655555444566666 6654 687877788899999983 2222 455556668999999
Q ss_pred cCCCcceeeeeccc-eeEEEEecCCCCcccceeeeccccC----CCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 426 NPCNEELLAVCGLK-ECIVFSFTSGMSQATDSITINPHCE----TSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 426 NP~ne~~LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l~l~----~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
.|-. |-.-++.. .-+|..+.+ +. ++|.|.++..-+ .+.+=+-.-|-+.-|+.++=-|..-|++|.+.+
T Consensus 242 spnr--ywL~~at~~sIkIwdl~~-~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 242 SPNR--YWLCAATATSIKIWDLES-KA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cCCc--eeEeeccCCceEEEeccc-hh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9865 43333333 444544444 44 677777766554 256777889999999999999999999998764
No 46
>KOG1587|consensus
Probab=58.45 E-value=78 Score=35.70 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=91.2
Q ss_pred ccccccccccCCCCccccccccccCCCcchhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhccc
Q psy11311 319 NTDNLMVPVMGSQEGAFENVRMNLNGDQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQ 398 (499)
Q Consensus 319 ~tD~lm~p~~gsqeGafenVr~~~~g~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkq 398 (499)
.||.++.|+.+.....+...+-..++. .+..+|.-+.+--.|+ -|.-|.|+|---.-.++=.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~----------------~~~t~~~F~~~~p~~F-iVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKA----------------VGATSLKFEPTDPNHF-IVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred eccccccchhhcccccccccccccccc----------------cceeeEeeccCCCceE-EEEcCCcEEEEEeccCCccc
Confidence 466667777776666666433222211 1222334445666777 45558888765333222222
Q ss_pred cccccccccccccccccc-ceeEEEeeecCCCcceeeeeccceeEEEEecC-CCCcccceeeeccccCCCceeEeeEEec
Q psy11311 399 IDSSKRKLTLIKLASVSL-PITILSVEANPCNEELLAVCGLKECIVFSFTS-GMSQATDSITINPHCETSNYIIKALWIP 476 (499)
Q Consensus 399 adss~~Kltl~rLs~~~V-pF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~-~G~~v~d~l~i~l~l~~~~fIik~~Wip 476 (499)
.. .-.++++.... +=+|..|.+||.-+.+++.+|=.-.+|..-.. ... -+.+.. .-.|+..+.|=|
T Consensus 384 ~~-----~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P------l~~~~~-~~~~v~~vaWSp 451 (555)
T KOG1587|consen 384 PE-----VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP------LLSLDS-SPDYVTDVAWSP 451 (555)
T ss_pred cc-----ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc------chhhhh-ccceeeeeEEcC
Confidence 11 22244433322 34688999999999999999944555554441 111 111111 357899999999
Q ss_pred CCCceEEEee-cCceEEeecCCC
Q psy11311 477 GRQSTLAIVT-ALNIKIYQLRPE 498 (499)
Q Consensus 477 gsq~~LAVvT-~~fVKIYDLs~d 498 (499)
....-.|++. ...+-||||.++
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred cCceEEEEEcCCCceehhhhhcc
Confidence 9999888888 789999999876
No 47
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=54.27 E-value=91 Score=34.65 Aligned_cols=106 Identities=23% Similarity=0.121 Sum_probs=76.3
Q ss_pred CeEEEeehhhhccccccccccccc-ccccccccceeEEEeeecCCCcceeeeecc--------ceeEEEEecCCCCcccc
Q psy11311 385 GKITLLQLSGLLKQIDSSKRKLTL-IKLASVSLPITILSVEANPCNEELLAVCGL--------KECIVFSFTSGMSQATD 455 (499)
Q Consensus 385 ~KVtllqls~LLkqadss~~Kltl-~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Gl--------keC~Vlti~~~G~~v~d 455 (499)
=||+||++|..-.= ....|..+ .+-+.+++-..==.+.+.|.. ++||+-=. ....|+.++...- ++.
T Consensus 402 lKisLFDVSD~~~P--~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g-~~~ 477 (521)
T PF09826_consen 402 LKISLFDVSDPANP--KELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSSYGYFNFQGAYVFSIDPEDG-FTL 477 (521)
T ss_pred eEEEEEecCCCCCc--cEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEccCccccceEEEEEEeCCCC-eEE
Confidence 48999999887642 22355666 667777777776778888855 66665444 5889999995555 555
Q ss_pred eeeecccc---CCCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 456 SITINPHC---ETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 456 ~l~i~l~l---~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
+-.|...- +....|.|..-|.. .|-.+....||.|||..
T Consensus 478 ~g~i~h~~~~~~~~~~~~R~lyi~d---~lYtvS~~~i~~~~l~t 519 (521)
T PF09826_consen 478 KGKITHPSPDYYYSYQIQRSLYIGD---TLYTVSDNGIKAYDLNT 519 (521)
T ss_pred EEEEEccCcccccccceeEEEEECC---EEEEEECCEEEEEehHh
Confidence 55555444 23567999999887 79999999999999863
No 48
>KOG0290|consensus
Probab=53.84 E-value=37 Score=36.15 Aligned_cols=84 Identities=14% Similarity=0.309 Sum_probs=59.9
Q ss_pred ccccccceeEEEeeec--CCCcceeeeeccce-----eEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCc---
Q psy11311 411 LASVSLPITILSVEAN--PCNEELLAVCGLKE-----CIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQS--- 480 (499)
Q Consensus 411 Ls~~~VpF~Vlsl~~N--P~ne~~LAV~Glke-----C~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~--- 480 (499)
.-....|+++-+|... |.-...|||-.|.| -+|+.++..+- .++...+.+--.=..|+.|||.+..
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~----e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG----ELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC----ceeccCCCCCCCCccceEecCCccccCc
Confidence 3456678888888776 56667899988875 57777775333 3444444443445789999999853
Q ss_pred eEEEeecCceEEeecCCC
Q psy11311 481 TLAIVTALNIKIYQLRPE 498 (499)
Q Consensus 481 ~LAVvT~~fVKIYDLs~d 498 (499)
.|--+|.+|.++|-.+.|
T Consensus 114 dlLATs~D~LRlWri~~e 131 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDE 131 (364)
T ss_pred chhhcccCeEEEEeccCc
Confidence 677799999999988753
No 49
>KOG1445|consensus
Probab=50.57 E-value=48 Score=38.56 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=70.1
Q ss_pred EEEE--eecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcc
Q psy11311 377 LVAV--SHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQA 453 (499)
Q Consensus 377 LvAV--shEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v 453 (499)
-||| ++-||+|+|+.|+.==+-+|.. +-.---.--|..+.-||.+++-|||++=. .-.+..+..+|-
T Consensus 593 rvAVPL~g~gG~iai~el~~PGrLPDgv--------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-- 662 (1012)
T KOG1445|consen 593 RVAVPLAGSGGVIAIYELNEPGRLPDGV--------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-- 662 (1012)
T ss_pred eEEEEecCCCceEEEEEcCCCCCCCccc--------ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC--
Confidence 3455 6678999999996543333322 22222234578899999999999998854 345566666553
Q ss_pred cceeeeccccC---CCceeEeeEEecCCCceEEEee-cCceEEeecCC
Q psy11311 454 TDSITINPHCE---TSNYIIKALWIPGRQSTLAIVT-ALNIKIYQLRP 497 (499)
Q Consensus 454 ~d~l~i~l~l~---~~~fIik~~Wipgsq~~LAVvT-~~fVKIYDLs~ 497 (499)
.+..-+|.-. -+.=|.-++|-|=----||+.. +..||||||..
T Consensus 663 -~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 663 -PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred -CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 1222233322 2567888899986555566654 56799999963
No 50
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=50.09 E-value=27 Score=20.57 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=21.3
Q ss_pred CceeEeeEEecCCCceEEEeecCceEEee
Q psy11311 466 SNYIIKALWIPGRQSTLAIVTALNIKIYQ 494 (499)
Q Consensus 466 ~~fIik~~Wipgsq~~LAVvT~~fVKIYD 494 (499)
...|..+.|-|..+..++.-....|++||
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45788999999775445555567889886
No 51
>KOG0650|consensus
Probab=48.86 E-value=1.1e+02 Score=35.45 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=51.2
Q ss_pred eEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccC----------------------------------
Q psy11311 419 TILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCE---------------------------------- 464 (499)
Q Consensus 419 ~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~---------------------------------- 464 (499)
+|.+|++||.....++-+-..+| +|.+|+. +.|++...+.-+
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~---~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I 518 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI---FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI 518 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCc-eEEeCcc---ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE
Confidence 89999999999988888889999 7777762 445555533322
Q ss_pred -CCceeEeeEEecCCCceEEEeec----CceEEeecCCC
Q psy11311 465 -TSNYIIKALWIPGRQSTLAIVTA----LNIKIYQLRPE 498 (499)
Q Consensus 465 -~~~fIik~~Wipgsq~~LAVvT~----~fVKIYDLs~d 498 (499)
...=|+++.|=-.- -+||+|-. ..|=||+||+-
T Consensus 519 ~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred ecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccc
Confidence 11334555554432 27788776 78889999873
No 52
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.07 E-value=51 Score=33.13 Aligned_cols=69 Identities=20% Similarity=0.102 Sum_probs=52.8
Q ss_pred cceEEEEeecCCeEEEeehhhhccccccccccccc-ccccccccceeEEEeeecCCCcceeeeeccceeEEEEecC
Q psy11311 374 RQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTL-IKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTS 448 (499)
Q Consensus 374 rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl-~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~ 448 (499)
.+.| +| +=++|+.|+.+..-.-| ...-+=+.+ ..+-.....|....|++. ++|+|+..-.|++||.+.+
T Consensus 146 tG~L-lV-g~~~~l~lf~l~~~~~~-~~~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s~~ev~Vlkl~~ 215 (215)
T PF14761_consen 146 TGNL-LV-GCGNKLVLFTLKYQTIQ-SEKFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMSDLEVLVLKLEQ 215 (215)
T ss_pred CCCE-EE-EcCCEEEEEEEEEEEEe-cccccEEechhhhhheecCceEEEEEEE---eeEEEEecCCEEEEEEEeC
Confidence 3567 78 48999999998776665 222234455 455677788999999997 8999999999999998753
No 53
>KOG1274|consensus
Probab=47.88 E-value=1.5e+02 Score=35.47 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred EEEEeecCCeEEEeehhhhccccccccccccccccc---ccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcc
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLA---SVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQA 453 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs---~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v 453 (499)
+|||+--.|+|.|.++..=. -+.|++-+- ...-.=.+-.++..|-+..|++++==+...|+.... ++
T Consensus 152 fLAvss~dG~v~iw~~~~~~-------~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we-- 221 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGI-------LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WE-- 221 (933)
T ss_pred EEEEEecCceEEEEEcccch-------hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ce--
Confidence 66999999999999986211 111222111 111133466788999986665554444444554443 55
Q ss_pred cceeeeccccCCCceeEeeEEecCCCceEE-EeecCceEEeecC
Q psy11311 454 TDSITINPHCETSNYIIKALWIPGRQSTLA-IVTALNIKIYQLR 496 (499)
Q Consensus 454 ~d~l~i~l~l~~~~fIik~~Wipgsq~~LA-VvT~~fVKIYDLs 496 (499)
....+.+..-... +..+.|=|.-+ +|| ..++.-|-|||--
T Consensus 222 -~~f~Lr~~~~ss~-~~~~~wsPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 222 -LQFKLRDKLSSSK-FSDLQWSPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred -eheeecccccccc-eEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence 1223333333334 88899999966 665 5667889999964
No 54
>KOG4378|consensus
Probab=46.49 E-value=27 Score=39.33 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=63.7
Q ss_pred EEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccce
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDS 456 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~ 456 (499)
|.++| -|+||-|.+.+++-.. ...-+...+-.|-++..|--| ||.|+.--+=.|+.+..+.-+..+=
T Consensus 5 l~~aS-~gd~~kl~D~s~~~~~----------~~~~~~t~~pg~~s~~w~~~n--~lvvas~~gdk~~~~~~K~g~~~~V 71 (673)
T KOG4378|consen 5 LHVAS-TGDKTKLSDFSDLETK----------SEYVHQTAEPGDFSFNWQRRN--FLVVASMAGDKVMRIKEKDGKTPEV 71 (673)
T ss_pred eeeec-cCCceEEeecccccCc----------cccccCCCCCcceeeeccccc--eEEEeecCCceeEEEecccCCCCcc
Confidence 44554 8999999999887542 222223333347777777554 7999988888888887765522221
Q ss_pred eeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 457 ITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 457 l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
-.++. .+|.---++--+..|--.++.=++.-||||||-
T Consensus 72 p~~~k--~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 72 PRVRK--LTGDNAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred ceeec--cccchHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 12211 123322233333444446677789999999984
No 55
>KOG0283|consensus
Probab=46.34 E-value=69 Score=37.29 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=54.7
Q ss_pred ccceeEEEeeecCCCcceeeeecc-c-eeEEEEecCCCCcccceeeeccccC---CCceeEeeEEecCCCceEEEeecCc
Q psy11311 415 SLPITILSVEANPCNEELLAVCGL-K-ECIVFSFTSGMSQATDSITINPHCE---TSNYIIKALWIPGRQSTLAIVTALN 489 (499)
Q Consensus 415 ~VpF~Vlsl~~NP~ne~~LAV~Gl-k-eC~Vlti~~~G~~v~d~l~i~l~l~---~~~fIik~~Wipgsq~~LAVvT~~f 489 (499)
-++--|-+|.+.|-. -.||.|- + .|.++.....- ..-...|+++-- .+-=|.-++-.||...+++|+|||.
T Consensus 449 Dl~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 449 DLRDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS 524 (712)
T ss_pred hhhhhheeEEeccCC--ceEEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC
Confidence 344557789999984 4455553 3 78888766533 333333444432 2557999999999999999999985
Q ss_pred -eEEeecC
Q psy11311 490 -IKIYQLR 496 (499)
Q Consensus 490 -VKIYDLs 496 (499)
|+|||+.
T Consensus 525 rIRI~d~~ 532 (712)
T KOG0283|consen 525 RIRIYDGR 532 (712)
T ss_pred ceEEEecc
Confidence 9999983
No 56
>KOG2445|consensus
Probab=45.63 E-value=99 Score=33.25 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred ccccccccceeEEEeeecCCCcceeeeeccc------eeEEEEecCCCCcccceeeecccc-CCCceeEeeEEecCCCc-
Q psy11311 409 IKLASVSLPITILSVEANPCNEELLAVCGLK------ECIVFSFTSGMSQATDSITINPHC-ETSNYIIKALWIPGRQS- 480 (499)
Q Consensus 409 ~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk------eC~Vlti~~~G~~v~d~l~i~l~l-~~~~fIik~~Wipgsq~- 480 (499)
.|+++..-|.--|+=-..-..+.+|||.-.+ ..+|+..+.+|. +...--.| .-+.-|+.+-|-|-.-.
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r----Kw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR----KWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc----eeeeehhcCCCCCcceeeeeccccCCc
Confidence 3555666665555555555668899998887 899999999994 33322223 34788999999996544
Q ss_pred --eEEEeecCceEEeecC
Q psy11311 481 --TLAIVTALNIKIYQLR 496 (499)
Q Consensus 481 --~LAVvT~~fVKIYDLs 496 (499)
.|||.|-+=|.||.+-
T Consensus 239 y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 239 YHLLAVATKDGVRIFKVK 256 (361)
T ss_pred eeeEEEeecCcEEEEEEe
Confidence 7999999999999875
No 57
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=45.26 E-value=5 Score=40.40 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=43.5
Q ss_pred ccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEe
Q psy11311 405 KLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWI 475 (499)
Q Consensus 405 Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wi 475 (499)
|+ ++.|.+-++|.||+-++..+.-.. |.-.|++-+.-..-...|..||| .||||.++.|-
T Consensus 123 Kl-V~~LG~fplPVEVip~a~~~v~r~-l~~~g~~~~lR~~~~k~GpviTD---------nGN~IlDv~~~ 182 (227)
T COG0120 123 KL-VEVLGKFPLPVEVIPFARSAVLRK-LEKLGGKPTLREGEGKDGPVITD---------NGNYILDVHFG 182 (227)
T ss_pred cc-hhhcCCCCcCEEEchhHHHHHHHH-HHHhCCCccccccccCCCCEEee---------CCCEEEEecCC
Confidence 44 688889999999999999888777 77777776554444556643555 37777777664
No 58
>KOG0647|consensus
Probab=45.07 E-value=63 Score=34.53 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=51.1
Q ss_pred eeEEEeeecCCCcceeeeeccceeE--EEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEE-eecCceEEee
Q psy11311 418 ITILSVEANPCNEELLAVCGLKECI--VFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAI-VTALNIKIYQ 494 (499)
Q Consensus 418 F~Vlsl~~NP~ne~~LAV~GlkeC~--Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAV-vT~~fVKIYD 494 (499)
=+|-.|+|+| -.++|+.||=+|.. |..+...|. ..-+-..+ -+.=+..+-|.... +..++ -....+|+||
T Consensus 28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~-~~~ka~~~----~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQ-LVPKAQQS----HDGPVLDVCWSDDG-SKVFSGGCDKQAKLWD 100 (347)
T ss_pred cchheeEecc-ccCceEEecccCCceEEEEEecCCc-ccchhhhc----cCCCeEEEEEccCC-ceEEeeccCCceEEEE
Confidence 3578899999 45788889988765 466777777 33333332 24557789999876 34443 3456899999
Q ss_pred cCCC
Q psy11311 495 LRPE 498 (499)
Q Consensus 495 Ls~d 498 (499)
|...
T Consensus 101 L~S~ 104 (347)
T KOG0647|consen 101 LASG 104 (347)
T ss_pred ccCC
Confidence 9864
No 59
>TIGR01171 rplB_bact ribosomal protein L2, bacterial/organellar. This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts.
Probab=43.91 E-value=2.7e+02 Score=29.04 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=66.8
Q ss_pred cccccccccccccceeEEEeeecCCCcceeeeeccce-eEEEEecCCCCcccceeeecccc-------------CCCcee
Q psy11311 404 RKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKE-CIVFSFTSGMSQATDSITINPHC-------------ETSNYI 469 (499)
Q Consensus 404 ~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glke-C~Vlti~~~G~~v~d~l~i~l~l-------------~~~~fI 469 (499)
|.+++++ ....++-.|++|...|....+||..-|++ ..-+.+-+.|-.+.|.+...+.. ..|.+|
T Consensus 61 R~IDf~r-~~~~i~g~V~~IeyDP~Rsa~IAlv~~~~g~~~YIlap~gl~~Gd~I~~g~~~~i~~Gn~lpL~~IP~Gt~I 139 (273)
T TIGR01171 61 RIIDFKR-NKDGIPAKVAAIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVISGPEAPIKPGNALPLRNIPVGTTV 139 (273)
T ss_pred ceeeccc-ccCCCcEEEEEEEeCCCCCcCEEEEEecCCcEEEEEccCCCCCCCEEEECCCCCCCCcCCcccccCCCCCEE
Confidence 3444455 22334568999999999999999998875 66788888887777777654332 148999
Q ss_pred EeeEEecCCCceEEEeecCceEEe
Q psy11311 470 IKALWIPGRQSTLAIVTALNIKIY 493 (499)
Q Consensus 470 ik~~Wipgsq~~LAVvT~~fVKIY 493 (499)
-.++.-||.-.+|+=..-.|..|-
T Consensus 140 ~NIE~~pg~Ggkl~RsAGt~A~ii 163 (273)
T TIGR01171 140 HNIELKPGKGGQLARSAGTSAQIL 163 (273)
T ss_pred EEEEecCCCCceEEEecCCeEEEE
Confidence 999999999989987777666654
No 60
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=43.41 E-value=2.3e+02 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.4
Q ss_pred ccceeeeeeccCcccccceEEEEeecCCeEEEeehh
Q psy11311 358 SIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLS 393 (499)
Q Consensus 358 ~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls 393 (499)
.-||++. ||. +.|+|.++-.|+|.|++|-
T Consensus 45 QWRkl~W----SpD---~tlLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 45 QWRKLAW----SPD---CTLLAYAESTGTIRVFDLM 73 (282)
T ss_pred hheEEEE----CCC---CcEEEEEcCCCeEEEEecc
Confidence 5688877 454 4588999999999999986
No 61
>CHL00052 rpl2 ribosomal protein L2
Probab=40.88 E-value=3.2e+02 Score=28.52 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=74.3
Q ss_pred CCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccce-eEEEEecCCCCcccceeeeccc
Q psy11311 384 KGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKE-CIVFSFTSGMSQATDSITINPH 462 (499)
Q Consensus 384 k~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glke-C~Vlti~~~G~~v~d~l~i~l~ 462 (499)
.|+||+-.-+.=-|+ .-|.+++++ ....++-.|++|..+|....+||.+-|.+ =.-+.+-+.|-.+.|.+.....
T Consensus 44 ~GrItvrhrGGG~kr---~yR~IDf~r-~~~~i~~~V~~IeyDP~Rsa~IAlv~~~~g~~~YIlAp~gl~~Gd~I~~g~~ 119 (273)
T CHL00052 44 RGIITARHRGGGHKR---LYRKIDFRR-NKKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGLKIGDTIVSGTE 119 (273)
T ss_pred CccEEEecccCCCcc---ccceecccc-ccCCCcEEEEEEEECCCCCccEEEEEeCCCcEEEEEccCCCCCCCEEEeCCC
Confidence 355555555543332 113444555 33457899999999999999999998876 4557777777667777665433
Q ss_pred c-------------CCCceeEeeEEecCCCceEEEeecCceEEe
Q psy11311 463 C-------------ETSNYIIKALWIPGRQSTLAIVTALNIKIY 493 (499)
Q Consensus 463 l-------------~~~~fIik~~Wipgsq~~LAVvT~~fVKIY 493 (499)
- ..|.+|-.++=.||.-.+||=..-.|..|-
T Consensus 120 ~~i~~Gn~lpL~~IP~Gt~I~NIE~~pg~Ggk~~RsAGt~A~ii 163 (273)
T CHL00052 120 APIKIGNALPLTNIPLGTAIHNIEITPGKGGQLARAAGAVAKLI 163 (273)
T ss_pred CCCCcccccccccCCCCCEEEEEEecCCCCceEEEecCCeEEEE
Confidence 1 158999999999999999987776666654
No 62
>KOG0318|consensus
Probab=39.90 E-value=98 Score=35.22 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=67.7
Q ss_pred cccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCC
Q psy11311 372 SKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMS 451 (499)
Q Consensus 372 g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~ 451 (499)
+|-=|++-. .|.+-|.+++= .-=|=|.|...=++ =|-.+-+||-. .+.|-+|-.-=.++-=+..||
T Consensus 158 sRPfRi~T~-sdDn~v~ffeG-------PPFKFk~s~r~Hsk-----FV~~VRysPDG-~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 158 SRPFRIATG-SDDNTVAFFEG-------PPFKFKSSFREHSK-----FVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred CCceEEEec-cCCCeEEEeeC-------CCeeeeeccccccc-----ceeeEEECCCC-CeEEEecCCccEEEEcCCCcc
Confidence 566677444 58888888762 11123344433333 47788999985 566666765544444455677
Q ss_pred cccceeeeccccC--CCceeEeeEEecCCCceEEEeecCceEEeecCCCC
Q psy11311 452 QATDSITINPHCE--TSNYIIKALWIPGRQSTLAIVTALNIKIYQLRPES 499 (499)
Q Consensus 452 ~v~d~l~i~l~l~--~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ds 499 (499)
.+=++.-+ -..=|--+-|-|.|+--|-+.....+||||.+..+
T Consensus 224 -----~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 224 -----KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred -----EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 33333322 12334468899999866777777899999998753
No 63
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=39.14 E-value=55 Score=36.89 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=74.4
Q ss_pred chhHHHH-HhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeee
Q psy11311 347 GQTIRQL-ISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEA 425 (499)
Q Consensus 347 gqtirql-ls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~ 425 (499)
++.||=. ...+.+.-.+. +|+|+|=.+|+=. ---++.+++|.+=|. ..+.+.-++ .|.|
T Consensus 264 e~~i~V~~~~~~pVhdf~W----~p~S~~F~vi~g~-~pa~~s~~~lr~Nl~--------~~~Pe~~rN-------T~~f 323 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTW----EPLSSRFAVISGY-MPASVSVFDLRGNLR--------FYFPEQKRN-------TIFF 323 (561)
T ss_pred ccccceeccccccceeeee----cccCCceeEEecc-cccceeecccccceE--------EecCCcccc-------cccc
Confidence 4455544 22455544433 5667665443311 234667777655442 111222222 2467
Q ss_pred cCCCcceeeeeccc--eeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCc------eEEeecC
Q psy11311 426 NPCNEELLAVCGLK--ECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALN------IKIYQLR 496 (499)
Q Consensus 426 NP~ne~~LAV~Glk--eC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~f------VKIYDLs 496 (499)
||- ++|+.++|+. .|-|..+...|. -.++.- .+ |.=-...+|=|+.|-+.+=+|..+ |||||..
T Consensus 324 sp~-~r~il~agF~nl~gni~i~~~~~r----f~~~~~-~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 324 SPH-ERYILFAGFDNLQGNIEIFDPAGR----FKVAGA-FN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cCc-ccEEEEecCCccccceEEeccCCc----eEEEEE-ee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 775 5999999987 799999998887 333321 11 222345899999999888888877 9999975
No 64
>KOG0266|consensus
Probab=38.74 E-value=4.4e+02 Score=28.24 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=69.6
Q ss_pred eeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccce
Q psy11311 361 RTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKE 440 (499)
Q Consensus 361 R~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glke 440 (499)
+..-|+=-||.|+. |++.+ -.++|-+.++ ...++ .++..| ..--+.|..++|.|... ..|.|-.|
T Consensus 160 ~sv~~~~fs~~g~~--l~~~~-~~~~i~~~~~-------~~~~~-~~~~~l--~~h~~~v~~~~fs~d~~--~l~s~s~D 224 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRA--LAAAS-SDGLIRIWKL-------EGIKS-NLLREL--SGHTRGVSDVAFSPDGS--YLLSGSDD 224 (456)
T ss_pred CceEEEEEcCCCCe--EEEcc-CCCcEEEeec-------ccccc-hhhccc--cccccceeeeEECCCCc--EEEEecCC
Confidence 44444444665644 53443 4555555555 11111 233333 55667899999999885 66677777
Q ss_pred eEEEEecC--CCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 441 CIVFSFTS--GMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 441 C~Vlti~~--~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
-.|-.+.- +|. ..-.+. .-.+||..+.+.|.++..+-.--...|+|||+..
T Consensus 225 ~tiriwd~~~~~~-----~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 225 KTLRIWDLKDDGR-----NLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred ceEEEeeccCCCe-----EEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 66655444 222 111111 2379999999999996555555667899999863
No 65
>KOG2041|consensus
Probab=37.97 E-value=1.7e+02 Score=35.00 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=72.7
Q ss_pred ccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-------ee-EEE
Q psy11311 373 KRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-------EC-IVF 444 (499)
Q Consensus 373 ~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-------eC-~Vl 444 (499)
.|-.| ||.-+.|.+-|..- += |- .--....||.|+...-||-. .+|||||.. +- +|.
T Consensus 228 drP~l-avcy~nGr~QiMR~--eN---D~--------~Pvv~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 228 DRPRL-AVCYANGRMQIMRS--EN---DP--------EPVVVDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred CCCEE-EEEEcCceehhhhh--cC---CC--------CCeEEecccEeecceecCCC-cEEEEccCcccccCccccceEE
Confidence 45667 99999999865432 11 11 11234567999999999855 999999986 22 566
Q ss_pred EecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecCCC
Q psy11311 445 SFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRPE 498 (499)
Q Consensus 445 ti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~d 498 (499)
-.++=|. + .=.++.+ |.-|.-.-|=-++- ++|+....||-|=++..+
T Consensus 293 Fysp~G~-i----~gtlkvp-g~~It~lsWEg~gL-riA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 293 FYSPYGH-I----VGTLKVP-GSCITGLSWEGTGL-RIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred Eeccchh-h----eEEEecC-CceeeeeEEcCCce-EEEEEecceEEEEeeccc
Confidence 6667676 3 3333343 88899999987754 899999999987666543
No 66
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.10 E-value=80 Score=33.54 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=54.5
Q ss_pred ccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccce---eEEEeeecCCCcceeeeeccceeEEEEecCC
Q psy11311 373 KRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPI---TILSVEANPCNEELLAVCGLKECIVFSFTSG 449 (499)
Q Consensus 373 ~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF---~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~ 449 (499)
+.++| -|+.|++-|.|+++-...+ +-..+.+..+ .+.-++ .|-++.|||.+ +-|.|.+=+.-.++.++.+
T Consensus 191 ~~~~l-~~aKEr~P~~I~~~~~~~~---~l~~~~~~~~--~~~~~~f~~DvSgl~~~~~~-~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 191 VDHRL-FVAKERNPIGIFEVTQSPS---SLSVHASLDP--TADRDLFVLDVSGLEFNAIT-NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCceE-EEEEccCCcEEEEEecCCc---ccccccccCc--ccccceEeeccccceecCCC-CcEEEEecCCceEEEEecC
Confidence 34556 5669999999999874332 1111111111 111122 34578899888 5677899999999999999
Q ss_pred CCcccceeeeccc
Q psy11311 450 MSQATDSITINPH 462 (499)
Q Consensus 450 G~~v~d~l~i~l~ 462 (499)
|+ +.+.+.+.=.
T Consensus 264 G~-~~~~lsL~~g 275 (316)
T COG3204 264 GE-VIELLSLTKG 275 (316)
T ss_pred CC-eeeeEEeccC
Confidence 99 8888877633
No 67
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=36.70 E-value=1.4e+02 Score=32.50 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=50.6
Q ss_pred cceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCC-CCc
Q psy11311 374 RQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSG-MSQ 452 (499)
Q Consensus 374 rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~-G~~ 452 (499)
|.++ ||..+..+|.|++- +.-+...+..+||.+-.|-+ ..+|+|.|=. .|.-+.+. |.
T Consensus 79 ~n~y-Av~~~~~~I~I~kn-------------~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~--~i~~yDw~~~~- 137 (443)
T PF04053_consen 79 RNRY-AVLESSSTIKIYKN-------------FKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD--FICFYDWETGK- 137 (443)
T ss_dssp SSEE-EEE-TTS-EEEEET-------------TEE-TT-----SS-EEEEE-----SSSEEEEETT--EEEEE-TTT---
T ss_pred CccE-EEEECCCeEEEEEc-------------CccccceEEcCCcccceEEc----CcEEEEECCC--CEEEEEhhHcc-
Confidence 5556 77644666776522 11133334566777777777 5788888776 34444443 55
Q ss_pred ccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecCC
Q psy11311 453 ATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 453 v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs~ 497 (499)
+.-++.+.+ ++.|.|=+.. ..+|++|.+.|-|++...
T Consensus 138 ~i~~i~v~~-------vk~V~Ws~~g-~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 138 LIRRIDVSA-------VKYVIWSDDG-ELVALVTKDSIYILKYNL 174 (443)
T ss_dssp EEEEESS-E--------EEEEE-TTS-SEEEEE-S-SEEEEEE-H
T ss_pred eeeEEecCC-------CcEEEEECCC-CEEEEEeCCeEEEEEecc
Confidence 666665542 7789998774 489999999999987553
No 68
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=34.45 E-value=2.5e+02 Score=32.59 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=76.1
Q ss_pred eEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEE--eeecCCCcceeeeeccceeEEE-EecCCCCc
Q psy11311 376 HLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILS--VEANPCNEELLAVCGLKECIVF-SFTSGMSQ 452 (499)
Q Consensus 376 ~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vls--l~~NP~ne~~LAV~GlkeC~Vl-ti~~~G~~ 452 (499)
.|+|| +-|--|||-||.- ..+.+-|+.++.-....-||+|+. -+--|-. +.|+|.--+|.-|| .+-.++.
T Consensus 74 aLLAV-QHkkhVtVWqL~~----s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s- 146 (671)
T PF15390_consen 74 ALLAV-QHKKHVTVWQLCP----STTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSS- 146 (671)
T ss_pred ceEEE-eccceEEEEEecc----CccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCc-
Confidence 57799 5677999999852 223446888898888888999985 4556655 78999888888665 3444444
Q ss_pred ccceeeeccccCCCceeEeeEEecCCCceEEEeecCceE--Eee
Q psy11311 453 ATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIK--IYQ 494 (499)
Q Consensus 453 v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVK--IYD 494 (499)
|..+++ ....+|-++-|...-| +|.|..-..+. |||
T Consensus 147 ---rVkaDi--~~~G~IhCACWT~DG~-RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 147 ---RVKADI--KTSGLIHCACWTKDGQ-RLVVAVGSSLHSYIWD 184 (671)
T ss_pred ---eEEEec--cCCceEEEEEecCcCC-EEEEEeCCeEEEEEec
Confidence 455554 5689999999999876 67666555444 555
No 69
>KOG0645|consensus
Probab=32.66 E-value=5.6e+02 Score=27.40 Aligned_cols=109 Identities=13% Similarity=0.266 Sum_probs=0.0
Q ss_pred ceeeeeeccCcccccceEEEEeecCCeEEEeehh-------hhcccccccccccccccccccccceeEEEeeecCCCcce
Q psy11311 360 RRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLS-------GLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEEL 432 (499)
Q Consensus 360 rR~amc~L~sp~g~rq~LvAVshEk~KVtllqls-------~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~ 432 (499)
+|..=.|..||+|| +||.+-=..-+.|.+=. +.|.-.++ ||-++++|+-. +|
T Consensus 61 krsVRsvAwsp~g~---~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----------------EVK~Vaws~sG-~~ 119 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGR---YLASASFDATVVIWKKEDGEFECVATLEGHEN-----------------EVKCVAWSASG-NY 119 (312)
T ss_pred hheeeeeeecCCCc---EEEEeeccceEEEeecCCCceeEEeeeecccc-----------------ceeEEEEcCCC-CE
Q ss_pred eeeeccc-eeEEEEecCCCCcccceeeeccccCC-CceeEeeEEecCCCceEEEeecCceEEee
Q psy11311 433 LAVCGLK-ECIVFSFTSGMSQATDSITINPHCET-SNYIIKALWIPGRQSTLAIVTALNIKIYQ 494 (499)
Q Consensus 433 LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l~l~~-~~fIik~~Wipgsq~~LAVvT~~fVKIYD 494 (499)
||-|.=. ..=|-.+...+| ...--.|++ .-=+..+.|=|---....-.=.+.||+|+
T Consensus 120 LATCSRDKSVWiWe~deddE-----fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 120 LATCSRDKSVWIWEIDEDDE-----FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred EEEeeCCCeEEEEEecCCCc-----EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEe
No 70
>KOG1445|consensus
Probab=32.43 E-value=1.3e+02 Score=35.26 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=64.6
Q ss_pred eecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeecccee--EEEEecCCCCcccceee
Q psy11311 381 SHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKEC--IVFSFTSGMSQATDSIT 458 (499)
Q Consensus 381 shEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC--~Vlti~~~G~~v~d~l~ 458 (499)
-|||||+.||-|.+- ..|+-++.-|.- -.=.|-.+.|.|..+.+||-|. +|| +|..|. +|- .+.
T Consensus 51 e~~G~~lgvlPl~~~------Gr~~r~i~~l~~--H~d~VtDl~FspF~D~LLAT~S-~D~~VKiW~lp-~g~----~q~ 116 (1012)
T KOG1445|consen 51 EGEGGKLGVLPLTAK------GRRTRDIGILAA--HGDQVTDLGFSPFADELLATCS-RDEPVKIWKLP-RGH----SQK 116 (1012)
T ss_pred cCCCceEEEEecccc------Cccccccceeec--ccceeeccCccccchhhhhccc-CCCeeEEEecC-CCc----ccc
Confidence 478899999877321 122223333322 2346778899999988887765 444 455565 444 223
Q ss_pred e-ccccC--CCcee-EeeEEecCCCceEEEeecCceEEeecCCC
Q psy11311 459 I-NPHCE--TSNYI-IKALWIPGRQSTLAIVTALNIKIYQLRPE 498 (499)
Q Consensus 459 i-~l~l~--~~~fI-ik~~Wipgsq~~LAVvT~~fVKIYDLs~d 498 (499)
| .|... .++.| -.++.-|-+..-|+......|+|||+++-
T Consensus 117 LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stq 160 (1012)
T KOG1445|consen 117 LSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQ 160 (1012)
T ss_pred cCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccC
Confidence 3 22222 23333 34566777778899999999999999863
No 71
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=32.41 E-value=42 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=24.7
Q ss_pred ccccceeeccCCCCCCCceeehhhhhh-hcCCCeEE
Q psy11311 73 FMNQHWYHCHTCKMIDGVGVCSVCAQV-CHKNHDIT 107 (499)
Q Consensus 73 ~irQ~~Y~C~TC~~~~~~gIC~aCA~v-CH~GHdLv 107 (499)
++.-..|+|.+|. ..-+|..|... .|..|..+
T Consensus 9 ~i~G~ry~C~~C~---d~dLC~~C~~~~~H~~H~f~ 41 (43)
T cd02340 9 PIVGVRYKCLVCP---DYDLCESCEAKGVHPEHAML 41 (43)
T ss_pred cCcCCeEECCCCC---CccchHHhhCcCCCCCCCEE
Confidence 5677899999998 36799999744 67777653
No 72
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.90 E-value=5.5e+02 Score=27.45 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=57.6
Q ss_pred ceEEEEeecCCeEEEeehhhhcccccccccccccccc--cccccceeEEEeeecCCCcceeeeecccee---------EE
Q psy11311 375 QHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKL--ASVSLPITILSVEANPCNEELLAVCGLKEC---------IV 443 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rL--s~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC---------~V 443 (499)
++++-|+-| |+|++++++.---.......+++.... .-.+...+. ++++|.. +.|-|...... +|
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg-~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRAR-DRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCC-CEEEEEecCCccccccCCCCEE
Confidence 345588888 999999986532110111111222111 123444444 7788776 44444322211 56
Q ss_pred EEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecC---ceEEeecCC
Q psy11311 444 FSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTAL---NIKIYQLRP 497 (499)
Q Consensus 444 lti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~---fVKIYDLs~ 497 (499)
..|+..--++..++.+.-.-+ .+.-=|+ +..+..+||. -|-|+|...
T Consensus 282 ~ViD~~t~kvi~~i~vG~~~~------~iavS~D-gkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 282 FVVDAKTGKRLRKIELGHEID------SINVSQD-AKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEECCCCeEEEEEeCCCcee------eEEECCC-CCeEEEEeCCCCCcEEEEECcC
Confidence 666553333777776644332 3333333 3236777774 489999754
No 73
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=31.87 E-value=92 Score=31.43 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=48.6
Q ss_pred ccceEEEEeecCCeEEEeehhhhccccccccccccccccc-ccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCC
Q psy11311 373 KRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLA-SVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMS 451 (499)
Q Consensus 373 ~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs-~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~ 451 (499)
++++|++| .|+.-..|+.+..+....+.. ......+. ....-+.+-+++++|...++|+. .=+.-.|+.++.+|.
T Consensus 128 ~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliL-S~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 128 KTNRLFVA-KERKPKRLYEVNGFPGGFDLF--VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLIL-SDESRLLLELDRQGR 203 (248)
T ss_dssp TTTEEEEE-EESSSEEEEEEESTT-SS--E--EEE-HHHH-HT--SS---EEEEETTTTEEEEE-ETTTTEEEEE-TT--
T ss_pred CCCEEEEE-eCCCChhhEEEccccCcccee--eccccccccccceeccccceEEcCCCCeEEEE-ECCCCeEEEECCCCC
Confidence 46888766 899998898887655211110 11111111 33344567889999998777666 556777899999999
Q ss_pred cccceeeecc
Q psy11311 452 QATDSITINP 461 (499)
Q Consensus 452 ~v~d~l~i~l 461 (499)
+...+.|..
T Consensus 204 -~~~~~~L~~ 212 (248)
T PF06977_consen 204 -VVSSLSLDR 212 (248)
T ss_dssp -EEEEEE-ST
T ss_pred -EEEEEEeCC
Confidence 888888775
No 74
>PTZ00180 60S ribosomal protein L8; Provisional
Probab=31.61 E-value=3.7e+02 Score=27.95 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=65.5
Q ss_pred cccccccccccccceeEEEeeecCCCcceeeeecccee------EEEEecCCCCcccceeeecccc-------------C
Q psy11311 404 RKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKEC------IVFSFTSGMSQATDSITINPHC-------------E 464 (499)
Q Consensus 404 ~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC------~Vlti~~~G~~v~d~l~i~l~l-------------~ 464 (499)
|..++++. ...++=+|+.|...|....+||.+-|++= +-+.+-+.|-.+.|.+.....- .
T Consensus 30 R~iDf~r~-~~~~~g~V~~IeyDPnRsA~IAlv~~~d~~~~~g~~~YIlAp~gl~vGd~I~~g~~a~i~~GN~lpL~~IP 108 (260)
T PTZ00180 30 RILDYAER-HGYIRGVVKDIEHDPGRGAPLARVEFRDPYKYKRVKELMVAPEGMYTGQYVYCGAKAPLAIGNVLPLGQIP 108 (260)
T ss_pred cccccccc-cCCcCEEEEEEEECCCCCceEEEEEecCCccccCceEEEEeeCCCCCCCEEEeCCCCCCCCcCccCHhhCC
Confidence 55555542 23467899999999999999999988872 2355666666677777654321 1
Q ss_pred CCceeEeeEEecCCCceEEEeecCceEEe
Q psy11311 465 TSNYIIKALWIPGRQSTLAIVTALNIKIY 493 (499)
Q Consensus 465 ~~~fIik~~Wipgsq~~LAVvT~~fVKIY 493 (499)
.|.+|-.++..||.-.+|+=..-.|..|-
T Consensus 109 ~GT~IhNIE~~pG~GgklaRSAGt~A~ii 137 (260)
T PTZ00180 109 EGTIVCNVEEKPGDRGTLARASGCYATII 137 (260)
T ss_pred CCCeEEEEeccCCCCceEEEecCCeEEEE
Confidence 58999999999999999987777776664
No 75
>KOG0293|consensus
Probab=30.77 E-value=98 Score=34.47 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=52.6
Q ss_pred ceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 417 PITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 417 pF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
..+|.-|.++|-. .||+-||..||..|-=-..|+ -.-.-++- .|+=.....|.|..+..++=.+.+.|--|||.
T Consensus 269 ~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd----~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 269 SQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGD----LRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cCceEEEEECCCC-CeEEecCchHheeeccCCcch----hhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 3568889999975 899999999996654444455 44444443 36788899999998875555566666666654
No 76
>KOG0277|consensus
Probab=30.69 E-value=1.7e+02 Score=30.98 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred ccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEe
Q psy11311 367 LSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSF 446 (499)
Q Consensus 367 L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti 446 (499)
.-|||- +.|+|-+--.+-..|.++.. + =|+++.-.-.+||+++-.|-.|++.| |.|=-||.|-.-
T Consensus 154 ~~sp~~--~nlfas~Sgd~~l~lwdvr~-------~-----gk~~~i~ah~~Eil~cdw~ky~~~vl-~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 154 AFSPHI--PNLFASASGDGTLRLWDVRS-------P-----GKFMSIEAHNSEILCCDWSKYNHNVL-ATGGVDNLVRGW 218 (311)
T ss_pred ecCCCC--CCeEEEccCCceEEEEEecC-------C-----CceeEEEeccceeEeecccccCCcEE-EecCCCceEEEE
Confidence 346654 56666654556666666521 1 14555333347999999999995554 555566666544
Q ss_pred cCCCCcccceeee-ccccCCCceeEeeEEecCCCceEEEeecCc-eEEeecC
Q psy11311 447 TSGMSQATDSITI-NPHCETSNYIIKALWIPGRQSTLAIVTALN-IKIYQLR 496 (499)
Q Consensus 447 ~~~G~~v~d~l~i-~l~l~~~~fIik~~Wipgsq~~LAVvT~~f-VKIYDLs 496 (499)
.=+-- |..| +| ..-+..|+|+-|=|-.-.-||=..=+| |+|||+.
T Consensus 219 Dir~~----r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 219 DIRNL----RTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ehhhc----cccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 33222 1111 22 223789999999999888887666554 8999987
No 77
>KOG2096|consensus
Probab=30.17 E-value=2.3e+02 Score=30.94 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=61.8
Q ss_pred ceEEEEeecCCeEEEeeh-hhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEE--ecCCC
Q psy11311 375 QHLVAVSHEKGKITLLQL-SGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFS--FTSGM 450 (499)
Q Consensus 375 q~LvAVshEk~KVtllql-s~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlt--i~~~G 450 (499)
..+++-+-++.||.|.+| +++|...|.-.-+++-- +-+|+ ..||||||+- |..|.+ |..+|
T Consensus 199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~a--------------avSP~-GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDA--------------AVSPD-GRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred ceEEEEecCCCcEEEEecCCceeeeeccccccccce--------------eeCCC-CcEEEEecCCCCceEEEEEeccCc
Confidence 445566679999999887 56776555533222222 22344 5999999997 888875 68889
Q ss_pred Ccccce-eeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 451 SQATDS-ITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 451 ~~v~d~-l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
+ +-+- -+.+|.-- ..-+.-+-.=|.|.-.+.|.-...+||||..
T Consensus 264 ~-fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 264 T-FQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred c-hhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 8 5431 12222111 1222223334555444455556789999965
No 78
>KOG0771|consensus
Probab=29.34 E-value=2.6e+02 Score=30.71 Aligned_cols=85 Identities=9% Similarity=0.178 Sum_probs=54.1
Q ss_pred ccccccccccce-eEEEeeecCCCcceeeeeccceeEEEEecC-CCCcccceeeeccccCCCceeEeeEEecCCCceEEE
Q psy11311 407 TLIKLASVSLPI-TILSVEANPCNEELLAVCGLKECIVFSFTS-GMSQATDSITINPHCETSNYIIKALWIPGRQSTLAI 484 (499)
Q Consensus 407 tl~rLs~~~VpF-~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~-~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAV 484 (499)
++-|+++..-+| .|-+|+-.+.. +|+||-+.. =-|+.+.. +-+ ++.+-++.- +.+|..+...|.++...-|
T Consensus 270 ~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d-GsVai~~~~~lq----~~~~vk~aH-~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD-GSVAIYDAKSLQ----RLQYVKEAH-LGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred cccchhhhhhccCcceeEEEcCCC-cEEEEeccC-CcEEEEEeceee----eeEeehhhh-eeeeeeEEEcCCcCccccc
Confidence 556777777778 66677777665 899988774 33333322 222 344444443 6699999999999977665
Q ss_pred eecCceEEeecCCC
Q psy11311 485 VTALNIKIYQLRPE 498 (499)
Q Consensus 485 vT~~fVKIYDLs~d 498 (499)
....-..+.-|+.|
T Consensus 343 Ss~~~~~v~~l~vd 356 (398)
T KOG0771|consen 343 SSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCceeEEEEeec
Confidence 55555555555443
No 79
>KOG0294|consensus
Probab=29.09 E-value=2.8e+02 Score=29.99 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=26.8
Q ss_pred ceEEEEeecCCeEEEeehhhh--cccccccccccccccccccccceeEEE
Q psy11311 375 QHLVAVSHEKGKITLLQLSGL--LKQIDSSKRKLTLIKLASVSLPITILS 422 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~L--Lkqadss~~Kltl~rLs~~~VpF~Vls 422 (499)
.||++- +|.|+|.+.+++.- ++---+.+.+ |+-|+..|-.---|+
T Consensus 98 shLlS~-sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 98 SHLLSG-SDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPSGKLALS 144 (362)
T ss_pred hheeee-cCCCcEEEEEcCCeEEeeeecccccc--cceeEecCCCceEEE
Confidence 499888 59999999999874 3322233222 454444444433333
No 80
>PF04797 Herpes_ORF11: Herpesvirus dUTPase protein; InterPro: IPR006882 This family of proteins are found in Herpesvirus. This family includes proteins called ORF10 and ORF11 amongst others.
Probab=28.86 E-value=80 Score=33.48 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=41.8
Q ss_pred ccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEE
Q psy11311 405 KLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAI 484 (499)
Q Consensus 405 Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAV 484 (499)
+.+|+|..+..|++.=+=...++..-..++|+|..+|..+.+.+ .+|.|++..+|+|
T Consensus 272 ~~~IpP~es~~v~~~~~y~~~~~~~~~~~~I~~~~~~~~~~i~p-----------------------~~W~P~~~~~ltv 328 (379)
T PF04797_consen 272 EKTIPPGESTKVKYNNMYEQGNPSKITAFFICGLNDNSDFVISP-----------------------CEWLPGSPLQLTV 328 (379)
T ss_pred ceEECCCCEEEEEEccEEEecCCCccceEEEEcCCCCceEEEee-----------------------eEECCCCceEEEE
Confidence 46778888888887766666666655556677777666665555 6899998888876
Q ss_pred e
Q psy11311 485 V 485 (499)
Q Consensus 485 v 485 (499)
.
T Consensus 329 ~ 329 (379)
T PF04797_consen 329 H 329 (379)
T ss_pred E
Confidence 4
No 81
>KOG0641|consensus
Probab=28.61 E-value=4.9e+02 Score=27.37 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=79.8
Q ss_pred CcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecC
Q psy11311 369 SPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTS 448 (499)
Q Consensus 369 sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~ 448 (499)
-|.| +|+|--|+...-+++++..=- .-.+-.|-.-+|-.+-|+|.. .||.-|.|..=.-+|==+
T Consensus 240 dpsg---rll~sg~~dssc~lydirg~r------------~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSG---RLLASGHADSSCMLYDIRGGR------------MIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCc---ceeeeccCCCceEEEEeeCCc------------eeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecc
Confidence 5544 477888888888888874310 111233444578889999987 899999998876666444
Q ss_pred CCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 449 GMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 449 ~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
|+ .+-+|.+-..-|--.-.|.++|-|.--.-|.-.....+..|-|+
T Consensus 304 -gd-la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 -GD-LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -cc-hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88 88888888777766777889999987766766667778888664
No 82
>KOG0307|consensus
Probab=27.78 E-value=1.3e+02 Score=36.45 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=90.0
Q ss_pred HHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCC
Q psy11311 350 IRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCN 429 (499)
Q Consensus 350 irqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~n 429 (499)
.-++=+.+...|.+-+..-+ +.-+|||=..|.|+|.+++..++++-... --|.+.++..- .|+.|-|||--
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~---~~~GlIaGG~edG~I~ly~p~~~~~~~~~----~~la~~~~h~G--~V~gLDfN~~q 128 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGS---HSHGLIAGGLEDGNIVLYDPASIIANASE----EVLATKSKHTG--PVLGLDFNPFQ 128 (1049)
T ss_pred cccccccccceeeeecccCC---CccceeeccccCCceEEecchhhccCcch----HHHhhhcccCC--ceeeeeccccC
Confidence 33445567777888888633 11257898899999999999999653222 22333333333 47889999999
Q ss_pred cceeeeeccc-eeEEEEecCCCCcccceeeecc-ccCCCceeEeeEEecCCCceEEEeecC-ceEEeecCCC
Q psy11311 430 EELLAVCGLK-ECIVFSFTSGMSQATDSITINP-HCETSNYIIKALWIPGRQSTLAIVTAL-NIKIYQLRPE 498 (499)
Q Consensus 430 e~~LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l-~l~~~~fIik~~Wipgsq~~LAVvT~~-fVKIYDLs~d 498 (499)
.+.||=.|=+ |-.|--+|+-. ...++ ....-..|..+.|=-+-|--||=++.. ++-||||.+.
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~------tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPE------TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcC------CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 9999976644 33333344311 22233 222457799999998888788888777 9999999764
No 83
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.61 E-value=2.1e+02 Score=30.13 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred cCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEec
Q psy11311 368 SSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFT 447 (499)
Q Consensus 368 ~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~ 447 (499)
.||.||. + .|+.-.|.|+++++.+. +-+.+..+.-.-.+++.+|-. +||+|+.+..-.|--|+
T Consensus 44 ~s~Dgr~--~-yv~~rdg~vsviD~~~~-------------~~v~~i~~G~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 44 FSPDGRY--L-YVANRDGTVSVIDLATG-------------KVVATIKVGGNPRGIAVSPDG-KYVYVANYEPGTVSVID 106 (369)
T ss_dssp -TT-SSE--E-EEEETTSEEEEEETTSS-------------SEEEEEE-SSEEEEEEE--TT-TEEEEEEEETTEEEEEE
T ss_pred ecCCCCE--E-EEEcCCCeEEEEECCcc-------------cEEEEEecCCCcceEEEcCCC-CEEEEEecCCCceeEec
Confidence 4777753 4 44445689999998432 344455666677788887654 89999999988888887
Q ss_pred -CCCCcccceeee
Q psy11311 448 -SGMSQATDSITI 459 (499)
Q Consensus 448 -~~G~~v~d~l~i 459 (499)
...+ +..++..
T Consensus 107 ~~tle-~v~~I~~ 118 (369)
T PF02239_consen 107 AETLE-PVKTIPT 118 (369)
T ss_dssp TTT---EEEEEE-
T ss_pred ccccc-ceeeccc
Confidence 4566 5555544
No 84
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.17 E-value=5.7e+02 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=49.8
Q ss_pred EEeecCCeEEEeehhhhcccccccccccccccccccccceeE-EEeeecCCCcceeeeeccceeEEEEecCCCCccccee
Q psy11311 379 AVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITI-LSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSI 457 (499)
Q Consensus 379 AVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~V-lsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l 457 (499)
.+..+.|+|+|++... .+.+.+.+.+..+ .++++.|- .+|+.|++ ++..|--|.-.-.++..++
T Consensus 10 V~~~~~~~v~viD~~t-------------~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~-rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT-------------NKVVARIPTGGAPHAGLKFSPD-GRYLYVAN-RDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp EEEGGGTEEEEEETTT--------------SEEEEEE-STTEEEEEE-TT--SSEEEEEE-TTSEEEEEETTSSSEEEEE
T ss_pred EEecCCCEEEEEECCC-------------CeEEEEEcCCCCceeEEEecCC-CCEEEEEc-CCCeEEEEECCcccEEEEE
Confidence 3445789999999743 2334444444443 34556654 47899998 4677777776433377777
Q ss_pred eeccccC------CCceeEeeEEecC
Q psy11311 458 TINPHCE------TSNYIIKALWIPG 477 (499)
Q Consensus 458 ~i~l~l~------~~~fIik~~Wipg 477 (499)
.+..... .|.|+.=.-|.|+
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred ecCCCcceEEEcCCCCEEEEEecCCC
Confidence 6654433 3677777777776
No 85
>KOG1407|consensus
Probab=27.09 E-value=4.6e+02 Score=27.93 Aligned_cols=145 Identities=19% Similarity=0.328 Sum_probs=89.2
Q ss_pred ccccccccccCCCCccccccccccCCCcchhHHH--HHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhc
Q psy11311 319 NTDNLMVPVMGSQEGAFENVRMNLNGDQGQTIRQ--LISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLL 396 (499)
Q Consensus 319 ~tD~lm~p~~gsqeGafenVr~~~~g~qgqtirq--lls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LL 396 (499)
++..+++.|-| -|--+ =|+|+ .||. -|.+|. -.++|+--+|.|| ++ ||-.-.--|+|-++..|+
T Consensus 157 ~~nd~Fflt~G--lG~v~--ILsyp-----sLkpv~si~AH~--snCicI~f~p~Gr--yf-A~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 157 NSNDLFFLTNG--LGCVE--ILSYP-----SLKPVQSIKAHP--SNCICIEFDPDGR--YF-ATGSADALVSLWDVDELI 222 (313)
T ss_pred CCCCEEEEecC--CceEE--EEecc-----ccccccccccCC--cceEEEEECCCCc--eE-eeccccceeeccChhHhh
Confidence 34455555544 24444 34555 2332 244666 5788998899885 45 996566678899999998
Q ss_pred ccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEec
Q psy11311 397 KQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIP 476 (499)
Q Consensus 397 kqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wip 476 (499)
=.-. ++|| -.+|-.|.|+ ++.++||-+.=.-=.-+-.-+.|+ .+-+.+.+ .-...|.|=|
T Consensus 223 C~R~-------isRl-----dwpVRTlSFS-~dg~~lASaSEDh~IDIA~vetGd-----~~~eI~~~--~~t~tVAWHP 282 (313)
T KOG1407|consen 223 CERC-------ISRL-----DWPVRTLSFS-HDGRMLASASEDHFIDIAEVETGD-----RVWEIPCE--GPTFTVAWHP 282 (313)
T ss_pred hhee-------eccc-----cCceEEEEec-cCcceeeccCccceEEeEecccCC-----eEEEeecc--CCceeEEecC
Confidence 6422 2222 3455555665 567899876544444444556676 22333333 2334699999
Q ss_pred CCCceEEEeec----------CceEEeecCCC
Q psy11311 477 GRQSTLAIVTA----------LNIKIYQLRPE 498 (499)
Q Consensus 477 gsq~~LAVvT~----------~fVKIYDLs~d 498 (499)
.+. .||-... ..||||-|+.|
T Consensus 283 k~~-LLAyA~ddk~~d~~reag~vKiFG~~~~ 313 (313)
T KOG1407|consen 283 KRP-LLAYACDDKDGDSNREAGTVKIFGLSND 313 (313)
T ss_pred CCc-eeeEEecCCCCccccccceeEEecCCCC
Confidence 976 6887764 47999988865
No 86
>KOG2111|consensus
Probab=26.50 E-value=2.2e+02 Score=30.76 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=50.1
Q ss_pred ccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEecC
Q psy11311 373 KRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSFTS 448 (499)
Q Consensus 373 ~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~ 448 (499)
+.+.+||-+.+||- |+.+ =.+.++.-|..+-+-..+-+|-.|+|||.. .+|||..=| --|||.+..
T Consensus 191 ~~Gt~vATaStkGT--LIRI-------Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 191 LQGTLVATASTKGT--LIRI-------FDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEeccCcE--EEEE-------EEcCCCcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence 45678898878774 3332 123355667788899999999999999976 999999988 578888765
No 87
>KOG2377|consensus
Probab=26.40 E-value=1.6e+02 Score=33.43 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=52.8
Q ss_pred eEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCce-eEeeEEecCCCceEEEeecCceEEeec
Q psy11311 419 TILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNY-IIKALWIPGRQSTLAIVTALNIKIYQL 495 (499)
Q Consensus 419 ~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~f-Iik~~Wipgsq~~LAVvT~~fVKIYDL 495 (499)
+|.||.|+|-| +-|||- -++|.|=-||-.|++ + ++...-.+..++- |--.-|... .+||++|+.=|.+|-.
T Consensus 68 ~I~SIkFSlDn-kilAVQ-R~~~~v~f~nf~~d~-~-~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 68 EIKSIKFSLDN-KILAVQ-RTSKTVDFCNFIPDN-S-QLEYTQECKTKNANILGFCWTSS--TEIAFITDQGIEFYQV 139 (657)
T ss_pred ceeEEEeccCc-ceEEEE-ecCceEEEEecCCCc-h-hhHHHHHhccCcceeEEEEEecC--eeEEEEecCCeEEEEE
Confidence 89999999987 777775 478888888886661 1 2222223334544 999999987 8999999999999864
No 88
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=26.17 E-value=6.7e+02 Score=25.04 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=66.2
Q ss_pred ceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeec-cceeEEEEecCCCCcc
Q psy11311 375 QHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCG-LKECIVFSFTSGMSQA 453 (499)
Q Consensus 375 q~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~G-lkeC~Vlti~~~G~~v 453 (499)
++| +|+ -|++|.|+++..= + ++.+.+....++.|++|... +++|+|.- ++--.++.++..+.
T Consensus 99 ~~l-v~~-~g~~l~v~~l~~~---------~-~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~-- 161 (321)
T PF03178_consen 99 GRL-VVA-VGNKLYVYDLDNS---------K-TLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN-- 161 (321)
T ss_dssp TEE-EEE-ETTEEEEEEEETT---------S-SEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE--
T ss_pred CEE-EEe-ecCEEEEEEccCc---------c-cchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC--
Confidence 446 553 7899999998421 1 78899999999999999986 56777665 57899999988555
Q ss_pred cceeeeccccC-CCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 454 TDSITINPHCE-TSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 454 ~d~l~i~l~l~-~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
++.+ +.-+ ...++..+.-|+.....|+-=....|-++...
T Consensus 162 --~l~~-va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 --KLIL-VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---EEE-EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred --EEEE-EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3333 2333 36778888888433433433344556666554
No 89
>KOG0268|consensus
Probab=25.98 E-value=1.3e+02 Score=33.04 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=74.1
Q ss_pred CcchhHHHHHhccccceeeeeeccCcccccceEEEEee---------cCCeEEEeehhhhcccccccccccccccccccc
Q psy11311 345 DQGQTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSH---------EKGKITLLQLSGLLKQIDSSKRKLTLIKLASVS 415 (499)
Q Consensus 345 ~qgqtirqlls~~~irR~amc~L~sp~g~rq~LvAVsh---------Ek~KVtllqls~LLkqadss~~Kltl~rLs~~~ 415 (499)
.|++|+|+.-..|..-++.+|= .. ++.+.| -|.+|.|.+..- .+|+++-.
T Consensus 126 gdDKtvK~wk~~~~p~~tilg~-------s~-~~gIdh~~~~~~FaTcGe~i~IWD~~R-------------~~Pv~sms 184 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGPPLHTILGK-------SV-YLGIDHHRKNSVFATCGEQIDIWDEQR-------------DNPVSSMS 184 (433)
T ss_pred cCCcceeeeeccCCcceeeecc-------cc-ccccccccccccccccCceeeeccccc-------------CCccceee
Confidence 4688888888777655555443 12 223333 344677776632 26777777
Q ss_pred ccee-EEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEE
Q psy11311 416 LPIT-ILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKI 492 (499)
Q Consensus 416 VpF~-Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKI 492 (499)
-++. |.++.|||...+.||+||-..=.||-=--.+. ..-++.+..... ++-|=| +...-++.|+=--+
T Consensus 185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~~mRTN------~IswnP--eafnF~~a~ED~nl 253 (433)
T KOG0268|consen 185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-PLKKVILTMRTN------TICWNP--EAFNFVAANEDHNL 253 (433)
T ss_pred cCCCceeEEecCCCcchheeeeccCCceEEEecccCC-ccceeeeecccc------ceecCc--cccceeeccccccc
Confidence 7775 89999999999999999876655554333344 555555555443 467888 45555555554333
No 90
>KOG0276|consensus
Probab=25.49 E-value=1.9e+02 Score=33.80 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEeeecCCCcceeeeeccc-eeEEEEecCCCCcccceeeeccccCC-CceeEeeEEecCCCceEEEeecC--ceEEee
Q psy11311 420 ILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQATDSITINPHCET-SNYIIKALWIPGRQSTLAIVTAL--NIKIYQ 494 (499)
Q Consensus 420 Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l~l~~-~~fIik~~Wipgsq~~LAVvT~~--fVKIYD 494 (499)
||+|+|||-+.+-.|-|-|. -.+|..+++.-. ...|+. .-=++.|...+|-.---.|+-++ .|||||
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCC--------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEee
No 91
>KOG1407|consensus
Probab=25.03 E-value=1.8e+02 Score=30.75 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=52.5
Q ss_pred eeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEE
Q psy11311 364 MCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIV 443 (499)
Q Consensus 364 mc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~V 443 (499)
+++ ||.| ++. ||...+|.||.++.. +-+++..-..+|+|..+.+|--|+=|.+-.|+---+|
T Consensus 112 i~w--sp~g--~~~-~~~~kdD~it~id~r-------------~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 112 ITW--SPDG--EYI-AVGNKDDRITFIDAR-------------TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred EEE--cCCC--CEE-EEecCcccEEEEEec-------------ccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 445 6656 455 777888999998763 3477888899999999999988888999999877777
Q ss_pred EEecC
Q psy11311 444 FSFTS 448 (499)
Q Consensus 444 lti~~ 448 (499)
|..-+
T Consensus 174 Lsyps 178 (313)
T KOG1407|consen 174 LSYPS 178 (313)
T ss_pred Eeccc
Confidence 76654
No 92
>KOG0289|consensus
Probab=24.88 E-value=2.8e+02 Score=31.21 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=56.5
Q ss_pred ccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecC
Q psy11311 409 IKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTAL 488 (499)
Q Consensus 409 ~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~ 488 (499)
.+.+..+.-=+|.-+.-+|-+ +||.-+.-+.|..|.--+.|. .|.++-.--.+.-+..+..=|+..---+=+-+.
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~----~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGS----QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCc----EEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 455555555667777777766 899999999999999999898 343333322244456667777744222223466
Q ss_pred ceEEeecCC
Q psy11311 489 NIKIYQLRP 497 (499)
Q Consensus 489 fVKIYDLs~ 497 (499)
-||||||+.
T Consensus 370 ~vkiwdlks 378 (506)
T KOG0289|consen 370 VVKIWDLKS 378 (506)
T ss_pred eEEEEEcCC
Confidence 799999975
No 93
>KOG0264|consensus
Probab=24.76 E-value=3.6e+02 Score=29.94 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=84.0
Q ss_pred eeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeE
Q psy11311 364 MCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECI 442 (499)
Q Consensus 364 mc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~ 442 (499)
-|+--+|++ .-++|-+.-.+-|.|++|..|= .+.-+.-.-.=+|+.|.++|-+|..||-.|.. --+
T Consensus 276 n~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~-----------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 276 NCVAFNPFN--EFILATGSADKTVALWDLRNLN-----------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred eEEEeCCCC--CceEEeccCCCcEEEeechhcc-----------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 355558888 5677887668889999995553 35555556667899999999999999999976 467
Q ss_pred EEEecCCCCccc----ceeeeccccC-C--CceeEeeEEecCCCceEEEeecCc-eEEeecC
Q psy11311 443 VFSFTSGMSQAT----DSITINPHCE-T--SNYIIKALWIPGRQSTLAIVTALN-IKIYQLR 496 (499)
Q Consensus 443 Vlti~~~G~~v~----d~l~i~l~l~-~--~~fIik~~Wipgsq~~LAVvT~~f-VKIYDLs 496 (499)
|.-++.-|+.-+ +.-+.||-.- . ..=|..+.|=|...=.|+=|+++. +.||+.+
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 777888776110 1111111111 1 145888999999888888888775 5788766
No 94
>PHA02754 hypothetical protein; Provisional
Probab=24.72 E-value=1.1e+02 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCceeEeeEEecCCCceEEEeecCceEE
Q psy11311 465 TSNYIIKALWIPGRQSTLAIVTALNIKI 492 (499)
Q Consensus 465 ~~~fIik~~Wipgsq~~LAVvT~~fVKI 492 (499)
.|.||-++--|--|-..+.|+|++-|||
T Consensus 30 ~GiYi~RIkai~~SGdkIVVi~aD~I~i 57 (67)
T PHA02754 30 AGIYIDRIKAITTSGDKIVVITADAIKI 57 (67)
T ss_pred CceEEEEEEEEEecCCEEEEEEcceEEE
Confidence 4899977666655557899999999998
No 95
>PRK04922 tolB translocation protein TolB; Provisional
Probab=23.45 E-value=7.8e+02 Score=25.88 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=43.2
Q ss_pred EEEeeecCCCcceeeeeccc--eeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecC----ceEEe
Q psy11311 420 ILSVEANPCNEELLAVCGLK--ECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTAL----NIKIY 493 (499)
Q Consensus 420 Vlsl~~NP~ne~~LAV~Glk--eC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~----fVKIY 493 (499)
..+.+++|-. ++|++..-+ .-+|+.++-.+. -..++.. .+.|.....|-|..+ .|+.++.+ .|.+|
T Consensus 294 ~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g-~~~~lt~-----~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 294 DTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGG-SAERLTF-----QGNYNARASVSPDGK-KIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ccceEECCCC-CEEEEEECCCCCceEEEEECCCC-CeEEeec-----CCCCccCEEECCCCC-EEEEEECCCCceeEEEE
Confidence 3456888854 667665433 246777765444 2233321 256666789998866 67776643 48899
Q ss_pred ecCC
Q psy11311 494 QLRP 497 (499)
Q Consensus 494 DLs~ 497 (499)
|+..
T Consensus 366 d~~~ 369 (433)
T PRK04922 366 DLST 369 (433)
T ss_pred ECCC
Confidence 9853
No 96
>KOG3243|consensus
Probab=23.34 E-value=26 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.3
Q ss_pred EeeEEecCCCceEEEeecCceE
Q psy11311 470 IKALWIPGRQSTLAIVTALNIK 491 (499)
Q Consensus 470 ik~~Wipgsq~~LAVvT~~fVK 491 (499)
|.++|+|||- +|-+.+.+|+|
T Consensus 53 I~ie~VPGS~-Elp~g~~~~~~ 73 (158)
T KOG3243|consen 53 IEIEWVPGSF-ELPVGAQNLGK 73 (158)
T ss_pred eeEEEcCCce-eccHHHHhhhh
Confidence 4589999986 78888888876
No 97
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.13 E-value=2e+02 Score=32.71 Aligned_cols=80 Identities=11% Similarity=0.242 Sum_probs=52.9
Q ss_pred ccccccc--ccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEe
Q psy11311 408 LIKLASV--SLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIV 485 (499)
Q Consensus 408 l~rLs~~--~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVv 485 (499)
++|++.. +.|=.|.+.+.||..+. +|.|-.|..|..+..+-. ++-.....+ -..-+.|=|++-. ++|.
T Consensus 248 lqrvsvtsipL~s~v~~ca~sp~E~k--LvlGC~DgSiiLyD~~~~-~t~~~ka~~------~P~~iaWHp~gai-~~V~ 317 (545)
T PF11768_consen 248 LQRVSVTSIPLPSQVICCARSPSEDK--LVLGCEDGSIILYDTTRG-VTLLAKAEF------IPTLIAWHPDGAI-FVVG 317 (545)
T ss_pred eeEEEEEEEecCCcceEEecCcccce--EEEEecCCeEEEEEcCCC-eeeeeeecc------cceEEEEcCCCcE-EEEE
Confidence 4444444 45556999999999865 466788999999887666 554333221 1234789999653 4443
Q ss_pred ec-CceEEeecCC
Q psy11311 486 TA-LNIKIYQLRP 497 (499)
Q Consensus 486 T~-~fVKIYDLs~ 497 (499)
.. .-++|||.+-
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 33 6799999764
No 98
>KOG0265|consensus
Probab=22.94 E-value=3.8e+02 Score=28.89 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=60.2
Q ss_pred cccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCc
Q psy11311 410 KLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALN 489 (499)
Q Consensus 410 rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~f 489 (499)
-+-.-..+=+|..+.|+| +..+||-.|+..- |+--|--|+ .-.--++. +- .+.|..+.|-+.+..-+..-|...
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~-I~LWnv~gd-ceN~~~lk--gH-sgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRA-IVLWNVYGD-CENFWVLK--GH-SGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcce-EEEEecccc-ccceeeec--cc-cceeEeeeeccCCCEEEEecCCce
Confidence 334455667899999999 7789998888654 455555555 32222222 22 578999999999999999999999
Q ss_pred eEEeecCC
Q psy11311 490 IKIYQLRP 497 (499)
Q Consensus 490 VKIYDLs~ 497 (499)
|..||...
T Consensus 114 v~~wD~~t 121 (338)
T KOG0265|consen 114 VRGWDAET 121 (338)
T ss_pred EEEEeccc
Confidence 99999754
No 99
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=22.71 E-value=4.9e+02 Score=27.98 Aligned_cols=118 Identities=15% Similarity=0.268 Sum_probs=57.1
Q ss_pred cceEEEEeecCCeEEEeehhh--hccccccccccccc-ccccccccceeEEEeeecCCCcceeeeeccceeEEEEe--c-
Q psy11311 374 RQHLVAVSHEKGKITLLQLSG--LLKQIDSSKRKLTL-IKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSF--T- 447 (499)
Q Consensus 374 rq~LvAVshEk~KVtllqls~--LLkqadss~~Kltl-~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti--~- 447 (499)
.-++|||+.|.|.++|+|+.. +|=++..+..++.- ..-.-..+-|.|+.+..-+.. ..+..||...-.+++| -
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS-Si~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS-SICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE-EEEEEEEETTSEEEEEEEEE
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc-ceEEEEEeCCCCEEEEEEec
Confidence 356889999999999999963 44332222100110 111111356777766442222 2677888885555555 4
Q ss_pred -CCCCcccceeeeccccCC---CceeEeeEEe-------------------cC--CCceEEEeecCceEEeecCC
Q psy11311 448 -SGMSQATDSITINPHCET---SNYIIKALWI-------------------PG--RQSTLAIVTALNIKIYQLRP 497 (499)
Q Consensus 448 -~~G~~v~d~l~i~l~l~~---~~fIik~~Wi-------------------pg--sq~~LAVvT~~fVKIYDLs~ 497 (499)
++|. ..+++.-.+ ..=|+.+.=+ +| .+..+.++|..-||||.+.+
T Consensus 175 ~~~g~-----f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 175 SSNGR-----FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp -GGG------EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCCCc-----eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 3333 333332221 1222222222 11 12378889999999998864
No 100
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=22.50 E-value=53 Score=33.61 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=36.6
Q ss_pred ccCCCCCcccccccccccccceeecc--CCCCCCCceeehhhh-hhhcCCCeEE-Eee
Q psy11311 57 DSLCNKLCTYTITQKEFMNQHWYHCH--TCKMIDGVGVCSVCA-QVCHKNHDIT-YSK 110 (499)
Q Consensus 57 ~~l~~~~CTf~~TG~~~irQ~~Y~C~--TC~~~~~~gIC~aCA-~vCH~GHdLv-y~K 110 (499)
+...+-.|+|. +.=.||.|. -|...+..+.=+-|- +.||++|... |.+
T Consensus 180 d~w~PC~C~l~------lci~WYPCgLKYCkgkd~k~ssYrCGIKTC~Kc~~f~yYV~ 231 (240)
T PF14941_consen 180 DSWKPCICRLE------LCIEWYPCGLKYCKGKDQKPSSYRCGIKTCQKCYQFDYYVP 231 (240)
T ss_pred CCCCceeeeec------ceeeeEccchhhccCCCCCCCccccccccccccccceeecC
Confidence 34456778888 778899994 587777677778887 6799999996 554
No 101
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=22.27 E-value=97 Score=23.43 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=22.2
Q ss_pred ccccceeeccCCCCCCCceeehhhhhh--hcCCCe
Q psy11311 73 FMNQHWYHCHTCKMIDGVGVCSVCAQV--CHKNHD 105 (499)
Q Consensus 73 ~irQ~~Y~C~TC~~~~~~gIC~aCA~v--CH~GHd 105 (499)
++.-..|+|.+|. ..-+|..|... -|.+|.
T Consensus 14 ~i~g~Ry~C~~C~---d~dLC~~C~~~g~~~~~H~ 45 (46)
T PF00569_consen 14 PIIGVRYHCLVCP---DYDLCEDCFSKGRHSHNHK 45 (46)
T ss_dssp SEESSEEEESSSS---S-EEEHHHHHH--H-SSSS
T ss_pred cCcCCeEECCCCC---CCchhhHHHhCcCCCCCcC
Confidence 5566789999996 47799999977 666664
No 102
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.04 E-value=4.2e+02 Score=26.80 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=32.5
Q ss_pred cccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCcccceeeecc
Q psy11311 414 VSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQATDSITINP 461 (499)
Q Consensus 414 ~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~v~d~l~i~l 461 (499)
..+-=+|-.|++||..+.+.||.+ +...|+.++.+|+ |..++.+.-
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d-~~~~i~els~~G~-vlr~i~l~g 63 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQD-EPGEIYELSLDGK-VLRRIPLDG 63 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEET-TTTEEEEEETT---EEEEEE-SS
T ss_pred CCccCCccccEEcCCCCeEEEEEC-CCCEEEEEcCCCC-EEEEEeCCC
Confidence 344446889999998877666666 5889999999999 999988764
No 103
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.89 E-value=2.4e+02 Score=29.62 Aligned_cols=111 Identities=11% Similarity=0.164 Sum_probs=57.8
Q ss_pred eeeeccCcccccceEEEEeecCC--eEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeecc--
Q psy11311 363 CMCILSSPQSKRQHLVAVSHEKG--KITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGL-- 438 (499)
Q Consensus 363 amc~L~sp~g~rq~LvAVshEk~--KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Gl-- 438 (499)
.++.--||.|+ +|+.++-++| .|-++++.. ... +++.. .+-.+.+.+++|-. +.||+..-
T Consensus 204 v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~------g~~-----~~l~~--~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 204 VLTPRFSPNRQ--EITYMSYANGRPRVYLLDLET------GQR-----ELVGN--FPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred eEeeEECCCCC--EEEEEEecCCCCEEEEEECCC------CcE-----EEeec--CCCcccCcEECCCC-CEEEEEEecC
Confidence 34444578774 5755654444 455555421 111 12221 22245677888966 44554432
Q ss_pred ceeEEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecC----ceEEeecC
Q psy11311 439 KECIVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTAL----NIKIYQLR 496 (499)
Q Consensus 439 keC~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~----fVKIYDLs 496 (499)
.+.+|+.++-.+. -..+|.- .........|-|... +|+.++++ .|-+||+.
T Consensus 268 g~~~Iy~~d~~~~-~~~~Lt~-----~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 268 GNTDIYTMDLRSG-TTTRLTD-----SPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCceEEEEECCCC-ceEEccC-----CCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECC
Confidence 2467887776555 2222211 122345589999754 67777654 35566654
No 104
>KOG0291|consensus
Probab=21.70 E-value=2.6e+02 Score=33.28 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=60.2
Q ss_pred cccccceeEEEeeecCCCcceeeeeccc-eeEEEEecCCCCcc---------------cceeeeccccCCCceeEeeEEe
Q psy11311 412 ASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSFTSGMSQA---------------TDSITINPHCETSNYIIKALWI 475 (499)
Q Consensus 412 s~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~~G~~v---------------~d~l~i~l~l~~~~fIik~~Wi 475 (499)
....++-.|+.++|.|.+ +=|||+-++ +=-++-+....+ + +|++.-+=. ..+.++..+..=
T Consensus 515 Etl~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q-~~~IdgrkD~~~gR~~~D~~ta~~s-a~~K~Ftti~yS 591 (893)
T KOG0291|consen 515 ETLEIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQ-VGSIDGRKDLSGGRKETDRITAENS-AKGKTFTTICYS 591 (893)
T ss_pred eeEeeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhcee-eccccchhhccccccccceeehhhc-ccCCceEEEEEc
Confidence 345678889999999998 678999998 666666665444 3 222221111 137889999999
Q ss_pred cCCCceEEEeecCceEEeecC
Q psy11311 476 PGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 476 pgsq~~LAVvT~~fVKIYDLs 496 (499)
+.-..-||==++.+|+|||..
T Consensus 592 aDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 592 ADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred CCCCEEEecCCcccEEEEECc
Confidence 998888999999999999974
No 105
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=21.59 E-value=40 Score=28.54 Aligned_cols=9 Identities=56% Similarity=1.206 Sum_probs=6.1
Q ss_pred eEeeCCCCC
Q psy11311 114 FFCDCGAKE 122 (499)
Q Consensus 114 F~CDCG~~k 122 (499)
|+||||.--
T Consensus 4 frC~Cgr~l 12 (68)
T PF09082_consen 4 FRCDCGRYL 12 (68)
T ss_dssp EEETTS--E
T ss_pred EEecCCCEE
Confidence 899999864
No 106
>KOG4131|consensus
Probab=21.47 E-value=2.1e+02 Score=29.88 Aligned_cols=44 Identities=32% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCCcchhhhhhhhhhhcccceeeeccc-cccccccCCCCccccccccccC
Q psy11311 295 PVGVFDRVSHGLFQLQNMQHKFVENTD-NLMVPVMGSQEGAFENVRMNLN 343 (499)
Q Consensus 295 ~~g~~~~~~~~l~~l~~~~k~~~~~tD-~lm~p~~gsqeGafenVr~~~~ 343 (499)
+.|...++.++|. .++-|.+ .-|- --|-|+.|. |-|+..||+.+
T Consensus 115 ~~gVNdwls~gIN--~~~~~p~-~~t~~gp~~~~~G~--gr~~e~~~~~~ 159 (272)
T KOG4131|consen 115 GGGVNDWLSKGIN--ANLSRPN-DPTKNGPMEETIGY--GREEETKINLN 159 (272)
T ss_pred ccchhHHHHHhhh--hhhcCCc-cccccCCCcccccc--cceeeccCccc
Confidence 5588888999988 4455555 3233 568899996 99998888887
No 107
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=21.18 E-value=2e+02 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=26.5
Q ss_pred cccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEe
Q psy11311 408 LIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSF 446 (499)
Q Consensus 408 l~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti 446 (499)
++.+..-.+|-+|-.|..||.+ |+||+.--+ +-.|+.+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL 40 (47)
T ss_pred cceecccCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEC
Confidence 3456666778889999999998 688876544 2444444
No 108
>PRK09374 rplB 50S ribosomal protein L2; Validated
Probab=20.93 E-value=6.3e+02 Score=26.45 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=65.6
Q ss_pred ccccccccccccceeEEEeeecCCCcceeeeeccce-eEEEEecCCCCcccceeeecccc-------------CCCceeE
Q psy11311 405 KLTLIKLASVSLPITILSVEANPCNEELLAVCGLKE-CIVFSFTSGMSQATDSITINPHC-------------ETSNYII 470 (499)
Q Consensus 405 Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glke-C~Vlti~~~G~~v~d~l~i~l~l-------------~~~~fIi 470 (499)
.++++|.. ..++-.|+.|...|....+||.+-|++ ..-+.+-+.|-.+.|.+.....- ..|.+|-
T Consensus 64 ~IDf~r~~-~~i~~~V~~IeyDP~Rsa~IAlv~~~~g~~~YIlAp~gl~~Gd~I~~g~~~~i~~Gn~lpL~~IP~Gt~I~ 142 (276)
T PRK09374 64 IIDFKRNK-DGIPAKVERIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVVSGPDADIKPGNALPLRNIPVGTTVH 142 (276)
T ss_pred ccchhhcc-CCCCEEEEEEEeCCCCCcCEEEEEecCCCEEEEEecCCCCCCCEEEeCCCCCCCccCccccccCCCCCEEE
Confidence 34444432 235678999999999999999998875 66688888887777777754321 1489999
Q ss_pred eeEEecCCCceEEEeecCceEEe
Q psy11311 471 KALWIPGRQSTLAIVTALNIKIY 493 (499)
Q Consensus 471 k~~Wipgsq~~LAVvT~~fVKIY 493 (499)
.++..||.-.+|+=..-.|..|-
T Consensus 143 NIE~~pG~Ggkl~RsAGt~A~ii 165 (276)
T PRK09374 143 NIELKPGKGGQLARSAGTSAQLV 165 (276)
T ss_pred EEEecCCCCceeEeecCCeEEEE
Confidence 99999999989887766666553
No 109
>KOG1240|consensus
Probab=20.78 E-value=8.6e+02 Score=30.84 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=75.3
Q ss_pred EEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccc-eeEEEEecC-CCCccc
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLK-ECIVFSFTS-GMSQAT 454 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~Glk-eC~Vlti~~-~G~~v~ 454 (499)
|.+-....|-|-|-|+.++++...+.+-.+|..+ ..-+++.+.|.+| .+.+||.+=. .-+++.|+. +++-.+
T Consensus 1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~~~---~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMCGN---GDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred eEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEeccC---CCeEEEEcCCCeEEEEEccccccccce
Confidence 4344458899999999999997555555566655 5667888888885 6899998544 466777776 333222
Q ss_pred ceeeeccccC-CCceeEeeEEecCCCc-eEEEee-cCceEEeecCC
Q psy11311 455 DSITINPHCE-TSNYIIKALWIPGRQS-TLAIVT-ALNIKIYQLRP 497 (499)
Q Consensus 455 d~l~i~l~l~-~~~fIik~~Wipgsq~-~LAVvT-~~fVKIYDLs~ 497 (499)
-....-+.+. .|-++.---..-+.|+ .|+.+| +.-|-+||...
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 2334445555 3666555555566666 566655 46678888754
No 110
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.70 E-value=5e+02 Score=27.70 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=33.7
Q ss_pred EEEEecCCCCcccceeeeccccCCCceeEeeEEecCCCceEEEeecCceEEeecC
Q psy11311 442 IVFSFTSGMSQATDSITINPHCETSNYIIKALWIPGRQSTLAIVTALNIKIYQLR 496 (499)
Q Consensus 442 ~Vlti~~~G~~v~d~l~i~l~l~~~~fIik~~Wipgsq~~LAVvT~~fVKIYDLs 496 (499)
.|..++..|. ..-++...- .-|+.+.|-.. +..+.|..+.+|.|||+.
T Consensus 62 ~I~iys~sG~-ll~~i~w~~-----~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDS-----GRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCC-EeEEEEECC-----CCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 4788888898 444444432 68999999774 445555556699999983
No 111
>KOG0649|consensus
Probab=20.58 E-value=90 Score=32.81 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=45.2
Q ss_pred EEEEeecCCeEEEeehhhhccccccccccccccc-ccccccceeEEEeeecCCCcceeeeeccceeEEEEec
Q psy11311 377 LVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIK-LASVSLPITILSVEANPCNEELLAVCGLKECIVFSFT 447 (499)
Q Consensus 377 LvAVshEk~KVtllqls~LLkqadss~~Kltl~r-Ls~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~ 447 (499)
++++..--|.|+++.|.+|++|..-++-|+-+-+ .++. -+|-.|+|- +++|.+||--...=..-+
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f~---d~~Lls~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAFH---DDFLLSGGDGLVYGWEWN 89 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeeee---hhheeeccCceEEEeeeh
Confidence 3466678899999999999998666666655533 3332 246677775 899999997544444433
No 112
>KOG1007|consensus
Probab=20.54 E-value=3.5e+02 Score=29.20 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecCCCcceeeeeccceeEEEEecCCCCc
Q psy11311 373 KRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANPCNEELLAVCGLKECIVFSFTSGMSQ 452 (499)
Q Consensus 373 ~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP~ne~~LAV~GlkeC~Vlti~~~G~~ 452 (499)
.+||.+|-.++.|+|-|-+. ||.+..-.+..+-.-=|-++-|||.- |-|...|=-||.|+--.. +.
T Consensus 225 nkq~~lvt~gDdgyvriWD~-----------R~tk~pv~el~~HsHWvW~VRfn~~h-dqLiLs~~SDs~V~Lsca-~s- 290 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDT-----------RKTKFPVQELPGHSHWVWAVRFNPEH-DQLILSGGSDSAVNLSCA-SS- 290 (370)
T ss_pred CceEEEEEcCCCccEEEEec-----------cCCCccccccCCCceEEEEEEecCcc-ceEEEecCCCceeEEEec-cc-
Q ss_pred ccceeeeccccCCCce
Q psy11311 453 ATDSITINPHCETSNY 468 (499)
Q Consensus 453 v~d~l~i~l~l~~~~f 468 (499)
|.-...|+...++.++
T Consensus 291 vSSE~qi~~~~dese~ 306 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESES 306 (370)
T ss_pred cccccccccccccccC
No 113
>KOG0286|consensus
Probab=20.08 E-value=1.1e+03 Score=25.48 Aligned_cols=122 Identities=16% Similarity=0.378 Sum_probs=75.6
Q ss_pred hhHHHHHhccccceeeeeeccCcccccceEEEEeecCCeEEEeehhhhcccccccccccccccccccccceeEEEeeecC
Q psy11311 348 QTIRQLISNNSIRRTCMCILSSPQSKRQHLVAVSHEKGKITLLQLSGLLKQIDSSKRKLTLIKLASVSLPITILSVEANP 427 (499)
Q Consensus 348 qtirqlls~~~irR~amc~L~sp~g~rq~LvAVshEk~KVtllqls~LLkqadss~~Kltl~rLs~~~VpF~Vlsl~~NP 427 (499)
++||-|++. | .+|=- ++.+ .|||-.| -.||+-|-+.-.-.| ...-||-++ =||..|+.|
T Consensus 49 r~LkGH~~K--i--~~~~w--s~Ds--r~ivSaS-qDGklIvWDs~TtnK--------~haipl~s~----WVMtCA~sP 107 (343)
T KOG0286|consen 49 RTLKGHLNK--I--YAMDW--STDS--RRIVSAS-QDGKLIVWDSFTTNK--------VHAIPLPSS----WVMTCAYSP 107 (343)
T ss_pred EEecccccc--e--eeeEe--cCCc--CeEEeec-cCCeEEEEEcccccc--------eeEEecCce----eEEEEEECC
Confidence 666655542 1 22322 5444 4676776 678888887633333 222333222 389999999
Q ss_pred CCcceeeeeccc-eeEEEEecCCCCcccceeeeccccCC-CceeEeeEEecCCCceEEEeec---CceEEeecCC
Q psy11311 428 CNEELLAVCGLK-ECIVFSFTSGMSQATDSITINPHCET-SNYIIKALWIPGRQSTLAIVTA---LNIKIYQLRP 497 (499)
Q Consensus 428 ~ne~~LAV~Glk-eC~Vlti~~~G~~v~d~l~i~l~l~~-~~fIik~~Wipgsq~~LAVvT~---~fVKIYDLs~ 497 (499)
-. +|+|--||. .|-|+.++.+..-. -..+.=.|.. ..|+-..+.++..| | +|. ....+||+-+
T Consensus 108 Sg-~~VAcGGLdN~Csiy~ls~~d~~g--~~~v~r~l~gHtgylScC~f~dD~~--i--lT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 108 SG-NFVACGGLDNKCSIYPLSTRDAEG--NVRVSRELAGHTGYLSCCRFLDDNH--I--LTGSGDMTCALWDIET 175 (343)
T ss_pred CC-CeEEecCcCceeEEEecccccccc--cceeeeeecCccceeEEEEEcCCCc--e--EecCCCceEEEEEccc
Confidence 87 899999998 79999999642201 1333333432 69999999999755 2 342 4566777643
Done!