RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11311
(499 letters)
>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Mouse (Mus musculus),
gamma2 [TaxId: 10090]}
Length = 119
Score = 31.2 bits (70), Expect = 0.098
Identities = 9/69 (13%), Positives = 21/69 (30%)
Query: 14 NKSLAECVGESEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEF 73
+ S + D+ I W + + D +S + I +++
Sbjct: 32 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW 91
Query: 74 MNQHWYHCH 82
M+ + C
Sbjct: 92 MSGKEFKCK 100
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 28.7 bits (64), Expect = 0.19
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 79 YHCHTCKMIDGVGVCSVCAQVCHKNHDIT 107
C T + +C +C HKNH
Sbjct: 23 LFCQTDQTC----ICYLCMFQEHKNHSTV 47
>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 29.2 bits (65), Expect = 0.33
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 27 FPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCH 82
++ W D + + E +S + T+ ++++N Y C
Sbjct: 31 SHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 86
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 29.6 bits (66), Expect = 0.43
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 65 TYTITQKEFMNQHWYHCHT 83
Y T WYH H
Sbjct: 94 LYKFTPAGHAGTFWYHSHF 112
>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12
beta chain), N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 28.2 bits (63), Expect = 0.54
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 23 ESEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCH 82
++ L D D +T D+ S S + T TI KEF + Y CH
Sbjct: 18 DAPGEMVVLTCDTPEEDGITWTLDQSSEVLGSGK--------TLTIQVKEFGDAGQYTCH 69
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 29.8 bits (66), Expect = 0.59
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVC 100
C C + I + + Y C C VG C + C
Sbjct: 138 CIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTC 178
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 28.8 bits (64), Expect = 0.65
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 64 CTYTITQKEFMNQHWYHCHT 83
Y + WYH H
Sbjct: 93 FLYDFHVPDQAGTFWYHSHL 112
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 26.1 bits (57), Expect = 1.4
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 68 ITQKEFMNQHW---YHCHTCKMIDGVGV-CSVCAQVCHKNH 104
+T F + + C C+ G C C H++
Sbjct: 1 LTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHC 41
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 28.9 bits (64), Expect = 1.6
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVC 100
C C Y + + C C G +VC++ C
Sbjct: 223 CITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETC 263
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 28.5 bits (63), Expect = 1.6
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 95 VCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKRNPQESSAAMSSASLSHQESSSM 154
+ AQ K D T+S F NF G +G L + + P AA S S +
Sbjct: 14 MDAQ--MKTFDTTFSHFKNFRLP-GVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKV 70
Query: 155 PSSLRQRSSFEP 166
LR
Sbjct: 71 SLQLRGEDGSVW 82
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 26.7 bits (58), Expect = 1.7
Identities = 7/42 (16%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 59 LCNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVC 100
C + C + C G C VC
Sbjct: 13 ACVEECPNEA-ITPGDPIYVIDPTKCSECVGAFDEPQCRLVC 53
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 181
Score = 28.3 bits (62), Expect = 1.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 66 YTITQKEFMNQHWYHCHTCKM 86
Y ++ WYH H +
Sbjct: 138 YHYPNQQRGAILWYHDHAMAL 158
>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 116
Score = 27.3 bits (60), Expect = 1.9
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 27 FPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCH 82
++ W D + E +S + I ++++N + C
Sbjct: 42 SKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCR 97
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 27.3 bits (60), Expect = 2.6
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 35 IEWND-DVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCHT 83
I W+ + D + + N+ Y +WYH H
Sbjct: 63 IHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHL 112
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 25.9 bits (56), Expect = 3.5
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 59 LCNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVC 100
+C C + + C G S C +VC
Sbjct: 13 VCEPECPN-GAISQGDETYVIEPSLCTECVGHYETSQCVEVC 53
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 26.9 bits (58), Expect = 5.0
Identities = 7/45 (15%), Positives = 8/45 (17%), Gaps = 4/45 (8%)
Query: 60 CNKLCTYTITQKEFMNQHWYHC----HTCKMIDGVGVCSVCAQVC 100
C Y + C H CA C
Sbjct: 105 LLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNC 149
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 27.1 bits (59), Expect = 5.9
Identities = 17/140 (12%), Positives = 27/140 (19%), Gaps = 9/140 (6%)
Query: 60 CNKLCTYTITQKEFMNQHWYHCHTCKMIDGVGVCSVCAQVCHKNHDITYSKFGNFFCDCG 119
+ +Y V +
Sbjct: 160 KKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQK 219
Query: 120 AKENGQCLALTKRN-PQESSAAMSSASLSHQESSSMPSSLRQRSSFEPILSNSY-HYMYD 177
A G P AA+ +A + E + H M
Sbjct: 220 AVAAGIPGIQVDGMDPLAVYAAVKAARERAING-------EGPTLIETLCFRYGPHTMSG 272
Query: 178 DNYYGYNQIKIENLREKLGP 197
D+ Y ++EN K P
Sbjct: 273 DDPTRYRSKELENEWAKKDP 292
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 103
Score = 25.3 bits (55), Expect = 7.0
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 27 FPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCH 82
++ W D + E +S + I +++++N + C
Sbjct: 29 SQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCK 84
>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon
constant domain 3, CH3-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.4 bits (55), Expect = 7.2
Identities = 6/56 (10%), Positives = 19/56 (33%)
Query: 27 FPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQKEFMNQHWYHCH 82
P +++ W+ + + +E + T + ++++ Y C
Sbjct: 29 APSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 84
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 209
Score = 26.2 bits (57), Expect = 7.7
Identities = 18/135 (13%), Positives = 31/135 (22%), Gaps = 26/135 (19%)
Query: 24 SEAFPPPLDLDIEWNDDVTHDDDEDSAGDESDEDSLCNKLCTYTITQ------KEFMNQH 77
+EA P P L +E + +M +
Sbjct: 3 AEALPLPFALKVE-------------------DPEGAPHFTLGYAFGLRVAPSPLWMQRA 43
Query: 78 WYHCHTCKMIDGVGVC-SVCAQVCHKNHDITYSKFGNFFCDCGAKENGQCLALTKRNPQE 136
+ + + V V V + H G A+E + L
Sbjct: 44 LFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTL 103
Query: 137 SSAAMSSASLSHQES 151
+ A +ES
Sbjct: 104 HPEDLVIAGWRGEES 118
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine
amidase YbjR, N-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 173
Score = 25.9 bits (56), Expect = 9.4
Identities = 5/52 (9%), Positives = 11/52 (21%), Gaps = 7/52 (13%)
Query: 67 TITQKEFMNQHWYHCHTCKMID-------GVGVCSVCAQVCHKNHDITYSKF 111
I Q + +H +G+ ++ F
Sbjct: 65 RIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPF 116
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 23.9 bits (51), Expect = 9.5
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 81 CHTC-KMIDGVG----VCSVCAQVCHKN 103
C C ++ G+ C C H
Sbjct: 14 CDHCGSLLWGLVKQGLKCEDCGMNVHHK 41
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3,
ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 24.3 bits (52), Expect = 9.6
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 69 TQKE-FMNQHW-YHCHTCKMIDGVGVCSVCAQVCHKNHD 105
Q E QH + C C + GV C C
Sbjct: 3 MQAESGFVQHVGFKCDNCGIEPIQGVRWHCQ-DCPPEMS 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.387
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,816,429
Number of extensions: 85631
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 36
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)