BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11318
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
Y C C K+FS D L +H H G + Y+C EC K FS +K LT+HQ H G + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
+C +++ + +L AH + C EC K+F+ L+ H Y+C EC
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC- 139
Query: 121 TSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K + + +L H + H K Y C +C K + + L H H+G +
Sbjct: 140 -GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 74 LAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRR 133
+A LE + C EC K+F+ L H Y+C EC K + K+DL R
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG--KSFSDKKDLTR 67
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
H + H K Y C +C K + Q ++L H H+G +
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ--NAIHRGIR-FQC 60
C C K F +K L H H G + ++C +C K + ++ L +H+ N ++R + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 61 NKCFRAYKLKKDLLAHTMLEHFG-IRHPCSECPKTFASRHSLKNHILKIHKA 111
+ C ++ + +L H M+ H G + + CS C + F + L++H++K+H
Sbjct: 70 SVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 36/143 (25%)
Query: 31 QCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTM---LEHFGIRH 86
+C C K F ++ YL H N H G + F+C KC + Y K++LL H +
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
CS C +TF R +LR HM H Y C
Sbjct: 68 TCSVCQETFRRR------------------------------MELRLHMVSHTGEMPYKC 97
Query: 147 TQCSKFYIQESDLMEHMA-VHSG 168
+ CS+ ++Q+ DL HM +HSG
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 3 YYCNACSKNFSAKDTLNKH-----MDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR 57
+ C C K + K+ L +H M+ + V + C C + F R L H + +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 58 FQCNKCFRAYKLKKDLLAHTMLEHFG 83
++C+ C + + KKDL +H + H G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
Y C C K+FS L KH H G + Y+C EC K FS L +HQ H G + ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 61 NKCFRAYKLKKDLLAH 76
+C +++ L H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 88 CSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
C EC K+F+ +L+ H Y+C EC K + DL++H + H K Y C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECG--KSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 148 QCSKFYIQESDLMEHMAVH 166
+C K + + L H H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
Y+C EC K + +L++H + H K Y C +C K + Q SDL +H H+G +
Sbjct: 5 YKCPECG--KSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
Y C C K+FS L KH H G + Y+C EC K FS +L++HQ
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPC 88
Y+C EC K FS L +HQ H G + ++C +C +++ DL H + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 89 SECPKTFASRHSLKNH 104
EC K+F+ L H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S+L +H H+G +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEK 31
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 7 ACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC--NKC 63
C+K F + KH+ H + C EC K F L +HQ +H G + FQC C
Sbjct: 12 GCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGC 70
Query: 64 FRAYKLKKDLLAHTMLEHFGIRH---PCSECPKTFASRHSLKNHILKIHKA 111
+ + L +L H + H G R P C K FA +LK+HIL KA
Sbjct: 71 GKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYH 145
H C+EC K F LK H L +QC K + +LR H+++H + Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 146 C--TQCSKFYIQESDLMEHMAVHSGVR 170
C C+K + Q ++L H+ H+ +
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
P C K F +++ H L H ++ C EC K ++ L+RH +H K + C
Sbjct: 9 PHKGCTKMFRDNSAMRKH-LHTHGPRVHVCAECG--KAFVESSKLKRHQLVHTGEKPFQC 65
Query: 147 T--QCSKFYIQESDLMEHMAVHSGVR 170
T C K + + +L H+ +H+G R
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDR 91
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR-- 57
+ C C K F L +H +H G + +QC E C K FS L H IH G R
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 58 ----FQCNKCF-RAYKLKKDLLAHT 77
CNK F ++ LK +L H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y+C+EC K + DL +H + H K Y C +C K +IQ S L+ H VH+G
Sbjct: 19 YKCDECG--KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
RY C+ C K+FS L+KH H G + Y+C+EC K F R +L H +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTG 71
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 29 RYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAH 76
RY+C+EC K FS L++H+ H G + ++C++C +A+ + L+ H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+RY C +C K + SDL +H H+G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG 43
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 8 CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFR 65
C K+F+ K ++HM +H G+R Y C C K F + +L H IH GI+ ++CN C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAK 73
Query: 66 AYKLKKDLLAHT 77
+ + H
Sbjct: 74 RFMWRDSFHRHV 85
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
Y C C K F K L HM IH G++ Y+C C K F R ++ HR + C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR-------DSFHRHVT-SCT 89
Query: 62 KCFRAYKLKKD 72
K + A K +++
Sbjct: 90 KSYEAAKAEQN 100
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
LY C +C S + ++RD RHM +H + Y C C K + + L+ HM +H+G++
Sbjct: 10 LYPC-QCGKSFTHKSQRD--RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIR-HP 87
Y C+ C K F+ + +H ++H G+R + C C + +K+K L+ H M H GI+ +
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYE 67
Query: 88 CSECPKTFASRHSLKNHILKIHKA 111
C+ C K F R S H+ K+
Sbjct: 68 CNICAKRFMWRDSFHRHVTSCTKS 91
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
+PC +C K+F + S ++ + +H + Y C C K + K L HMK+H K Y
Sbjct: 11 YPC-QCGKSFTHK-SQRDRHMSMHLGLRPYGCGVCG--KKFKMKHHLVGHMKIHTGIKPY 66
Query: 145 HCTQCSKFYIQESDLMEHM 163
C C+K ++ H+
Sbjct: 67 ECNICAKRFMWRDSFHRHV 85
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 63 CFRAYKLKKDLLAHTMLEHFGI----RHPC--SECP---KTFASRHSLKNHILKIHKAVL 113
C R + +L+ H +EH G H C ECP K+F +++ L NHI
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHS 167
+ C K + +L+ H + H K + C C + + SD +HM VH+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 71 KDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCN------ECS-TSK 123
K L+ ++ + P C +TF++ H L H+ H Q N EC K
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK 70
Query: 124 DYLTKRDLRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHSGVR 170
+ K L H+++H K + C C K + + +L H H+G +
Sbjct: 71 SFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK 119
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS D L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 63 ACDICGRKFARSDERKRHTKI 83
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + +L RH+++H K + C C + + + L H+ H+G
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ L HI +IH +QC C + D+LT H++ H K
Sbjct: 7 PVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 60
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS D L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + +L RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ L HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS D L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + +L RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ L HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 88 CSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
C C K+F +L H+L Y C C K + K D+++H +H K + C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCG--KRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 148 QCSKFYIQESDLMEHMAVHSG 168
C K + Q S+L+ H H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
+ C C K+F TL+ H+ IH R Y C+ C K F + + +H IH G + +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 61 NKCFRAYKLKKDLLAHT 77
C +A+ +L+ H+
Sbjct: 61 QVCGKAFSQSSNLITHS 77
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
+ C C K + L H+ +H + + Y C C K + Q+SD+ +H +H+G +
Sbjct: 2 FDCKICG--KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS +L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ SL HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + L RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
C C K FS KD L HM H GV+ Y+C+ C + L +H IH R F+C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQI 69
Query: 63 CFRAYKLKKDLLAHTMLEHFGIRHPCS 89
C A + L H + H G P S
Sbjct: 70 CPYASRNSSQLTVH-LRSHTGDSGPSS 95
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAVL-YQCNECSTSKDYLT--KRDLRRHMKLHFNGK 142
H C C K F+ + LK H ++ H V Y+C C DY L +H+++H + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTC----DYAAADSSSLNKHLRIHSDER 63
Query: 143 RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
+ C C S L H+ H+G ++G
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQH 48
Y C C + +LNKH+ IH R ++C+ CP LT H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + +L RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ +L HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + +L RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ L HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + + HT +
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + DL RH+++H K + C C + + + L H+ H+G
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS---TSKDYLTKRDLRRHMKLHFNGK 142
P C + F+ L HI +IH +QC C + D+LT H++ H K
Sbjct: 8 PVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTT-----HIRTHTGEK 61
Query: 143 RYHCTQCSKFYIQESDLMEHMAVH 166
+ C C + + + + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
Y C C K FS L +H +H G + Y+C EC K FS L HQ
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLT 173
Y C EC K + L +H ++H K Y C +C K + Q S L+ H +H T
Sbjct: 15 YGCVECG--KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH------T 66
Query: 174 TGP 176
+GP
Sbjct: 67 SGP 69
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFG 83
Y C EC K FS L QHQ +H G + ++C +C +A+ L+ H + G
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + + S L++H VH+G
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG 39
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS K L+ H+ IH G + +QC C ++FS L QH H G + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 59 QCNKCFRAY 67
C+ C R +
Sbjct: 64 ACDICGRKF 72
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFST 41
+ C C +NFS LN+H+ H G + + C+ C + F+T
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + K +L H+++H K + C C + + Q + L +H+ H+G
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQH 48
Y C +C + FS D L +H+ IH G + +QC C ++FS +LT H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHS 167
Y C S + + +L RH+++H K + C C + + + L H+ H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C +C + FS K L+ H+ IH G + +QC C ++FS + L H H G + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAHTML 79
C+ C R + HT +
Sbjct: 64 ACDICGRKFATLHTRTRHTKI 84
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C S + + K +L H+++H K + C C + + Q++ L H+ H+G
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 87 PCSECPKTFASRHSLKNHILKIHKAVL-YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYH 145
P C + F+ + +L HI +IH +QC C +++ + L H++ H K +
Sbjct: 8 PVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICM--RNFSQQASLNAHIRTHTGEKPFA 64
Query: 146 CTQCSKFYIQESDLMEHMAVH 166
C C + + H +H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 7 ACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
C+K + L H H G + YQC+ +C + FS L +HQ H G++ FQC
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKT 71
Query: 63 CFRAYK----LKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNH 104
C R + LK HT + F R P C K FA L H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRH 115
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C+ C + FS D L +H H GV+ +QC+ C + FS +L H H G + F
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPF 95
Query: 59 QCN--KCFRAYKLKKDLLAH 76
C C + + +L+ H
Sbjct: 96 SCRWPSCQKKFARSDELVRH 115
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 91 CPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS 150
C K + L+ H K YQC+ + + L+RH + H K + C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 151 KFYIQESDLMEHMAVHSGVRKLT 173
+ + + L H H+G + +
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFS 96
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQN 50
+ C C + FS D L H H G + + C C K F+ L +H N
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 7 ACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
C K ++ L H+ H G + Y C+ C F+ LT+H H G R FQC K
Sbjct: 13 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQK 71
Query: 63 CFRAYKLKKDLLAHTMLEHF 82
C RA+ + D LA M HF
Sbjct: 72 CDRAFS-RSDHLALHMKRHF 90
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 91 CPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS 150
C KT+ LK H+ Y C+ + +L RH + H + + C +C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 151 KFYIQESDLMEHMAVH 166
+ + + L HM H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 110 KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHS 167
+ + C+ K Y L+ H++ H K YHC C + + +L H H+
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 168 GVR 170
G R
Sbjct: 63 GHR 65
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 7 ACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
C K ++ L H+ H G + Y C+ C F+ LT+H H G R FQC K
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQK 70
Query: 63 CFRAYKLKKDLLAHTMLEHF 82
C RA+ + D LA M HF
Sbjct: 71 CDRAFS-RSDHLALHMKRHF 89
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 91 CPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS 150
C KT+ LK H+ Y C+ + +L RH + H + + C +C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 151 KFYIQESDLMEHMAVH 166
+ + + L HM H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 110 KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHS 167
+ + C+ K Y L+ H++ H K YHC C + + +L H H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 168 GVR 170
G R
Sbjct: 62 GHR 64
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR---YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C F KD ++ H+ H G Y C+ C K FS +L H +H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 32 CEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFG-IRHP-- 87
CE C K F +L +H+ + H G + + C C +K +KD +++ + H G + P
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFK-RKDRMSYHVRSHDGSVGKPYI 67
Query: 88 CSECPKTFASRHSLKNHILKIHKA 111
C C K F+ L HI ++H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 88 CSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN--GKRYH 145
C C K F + L H L Y C C + K + H++ H GK Y
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLR--FKRKDRMSYHVRSHDGSVGKPYI 67
Query: 146 CTQCSKFYIQESDLMEHM-AVHSG 168
C C K + + L H+ VHSG
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
Y C C +++ +L +H +IH +Y C C K F +Y T+H+ R+QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 62 KCFRAY 67
C +++
Sbjct: 83 ACGKSF 88
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGV-RYQCEECPKDFSTRKYLTQHQNAIH 53
+Y C C K F + KH H G RYQC C K F ++++ H ++H
Sbjct: 50 KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAV 165
L + V Y C C S Y+ LRRH +H K+Y C C K + +H
Sbjct: 15 LIVDGRVYYICIVCKRS--YVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 166 HSGVRK 171
H+G R+
Sbjct: 73 HTGERR 78
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ C C++ F+ ++ L +H H + Y C C + F+ R L +H IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 58 FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVL 113
F C C RA+ ++ L H +PC C + F R L H KIH L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSG 168
+ C C+ + + + L+RH + H N K Y C C++ + + L+ H +HSG
Sbjct: 3 FVCEVCT--RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDI-HKGVRYQCEECPKDFSTRKYLTQHQNAIH 53
+ C C ++F++K +H+ + H + C+ CP F + LT+H N H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 20/50 (40%)
Query: 60 CNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
C C ++ K H L H PC CP TF S L HI K H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHM 135
H C C ++FAS+ + + H+ +H A ++ C C + + + L RH+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPAT--FYSSPGLTRHI 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y+C+ C S Y K +L H +H K Y C C + + ++L H +HSG
Sbjct: 18 YKCDRCQASFRY--KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C+ C +F K L H +H G + Y+C C F+ L H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSG 70
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y+C +C K +I +S L EH +H+G + +GP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK--PSGP 43
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR 57
+YC+ C+K ++ L H+ H G + Y+C E C F+ LT+H H G +
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74
Query: 58 -FQCNKCFRAYKLKKDLLAHTMLEH 81
FQC C R++ + D LA M H
Sbjct: 75 PFQCGVCNRSFS-RSDHLALHMKRH 98
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 91 CPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS 150
C K + LK H+ Y+C + +L RH + H K + C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 151 KFYIQESDLMEHMAVH 166
+ + + L HM H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 108 IHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAV 165
+ K ++ C+ +K Y L+ H++ H K Y CT C + + +L H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 166 HSGVRKLTTG 175
H+G + G
Sbjct: 70 HTGAKPFQCG 79
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR 57
++C +C K FS KYLTQH+ RG++
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C EC KDFS++ YL HQ IH G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQR-IHTG 35
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y CN C K+FS+K L H IH G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIH 53
+ C C +NFS D L H+ H G + + C+ C + F+ +H++ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S L H +H+GV+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K F+ L H IH GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR 57
Y+C EC K F+ +L HQ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQR-IHTGVK 39
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
+ C C ++F+ L H H R Y C+ C K F + +L H+ + F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 62 KCFRAYKLKKDLLAHTML 79
+C + + + L H L
Sbjct: 78 ECGKGFCQSRTLAVHKTL 95
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 95 FASRHSLKNHILKIHKAVL-----YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQC 149
F RH K++ L IH+ Y C+ C K + + LR H +H K + C +C
Sbjct: 22 FCGRHFTKSYNLLIHERTHTDERPYTCDICH--KAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 150 SKFYIQESDLMEHMAVH 166
K + Q L H +H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 58 FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCN 117
F C C R + +LL H + C C K F + L++H K ++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 118 ECSTSKDYLTKRDLRRHMKLHFN 140
EC K + R L H LH
Sbjct: 78 EC--GKGFCQSRTLAVHKTLHMQ 98
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C +C K FS R LT HQ AIH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQ-AIHTG 37
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y CN C K FS + +L H IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C QC K + S L H A+H+G K +GP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTG--KKPSGP 43
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
K Y C++C K +I+ S L+ H HSG ++G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
KRY C +C K + + S L +H +H+G + +GP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK--PSGP 43
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR 29
RY CN C K FS L++H IH G +
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 29 RYQCEECPKDFSTRKYLTQHQNAIHRG 55
RY+C EC K FS L+QHQ IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQK-IHTG 37
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y CN C K+F K LN+H IH G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTG 37
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K +IQ+S L H +H+G + +GP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK--PSGP 43
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 144 YHCTQCSKFYIQESDLMEHMAVHSG 168
+ C+ C KF++Q S+ ++H +H+G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTG 37
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 116 CNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
CN C K Y L RH + H + C +C K + +S++ H+ VH
Sbjct: 7 CNFCG--KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDF----STRKYLTQHQN 50
++CN C K + L++H H G R C EC K F ++L HQN
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L+ H +H+G
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 87 PCS--ECPKTFASRHSLKNH--ILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK 142
PC C + F++R L +H IH+ + C E + K + K+ L+ HMKLH + +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 143 RYHC 146
Y C
Sbjct: 68 DYIC 71
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 65 RAYKLKKDLLAHTMLEHFGIRHPCSE--CPKTFASRHSLKNHILKIHKAVLYQCNECSTS 122
+ +KL+ L HT + F PC E C K F S H L H L + C+
Sbjct: 26 KNWKLQAHLCKHTGEKPF----PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 81
Query: 123 KDYLTKRDLRRHMKLHFNGK----RYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIK 178
+ TK ++++H N K H C K + + + L H H+
Sbjct: 82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG 141
Query: 179 TEQTFGV------RELRHVGFPMKTD 198
++ F + E H G+P K D
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKD 167
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 2 RYYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEE--CPKDFSTRKYLTQHQNAIHRGI 56
RY C+ C ++ L H+ H G + + C+E C K F++ +LT+H + H G
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGE 70
Query: 57 R-FQCNK--CFRAYKLKKDLLAH----------TMLEHFGIRHPCSECPKTFASRHSLKN 103
+ F C+ C + K ++ H + HF C K F + LK
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF------ENCGKAFKKHNQLKV 124
Query: 104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH 138
H + + Y+C K + L+RH K+H
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q+++L +H +H+G +
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C EC K F+ + LTQHQ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQR-IHTG 37
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y C C K F+ K L +H IH G +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S L H +H+G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNA 51
+Y C C L KH+ H VR Y C C F T+ LT+H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM 163
Y C EC + L++H++ H + + YHCT C+ + + +L +HM
Sbjct: 2 YICEECGIRXKKPSM--LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C QC K + Q+ L+ H+ VH+G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K FS K +L H+ +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 63 CFRAYKLKKDLLAHTMLEHFGI----RHPC--SECP---KTFASRHSLKNHI 105
C R + +L+ H +EH G H C ECP K+F +++ L NHI
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K +IQ L +H VH+G R ++GP
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER--SSGP 43
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S L H +H+G +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K + +S L+ H VH+GV+ +GP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP--SGP 41
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K F+ K L H +H GV+
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
K Y C+ C K + +S L+ H +H+GV ++G
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPSSG 42
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGV 28
Y C+ C K F+ K L H IH GV
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S L H +H+G +
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C EC K F TR LT HQ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQ-VIHTG 37
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K + S+L H +H+G ++ +GP
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR--SGP 43
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H VH+G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q S L H VH+G +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K FS L +H +H G +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 29 RYQCEECPKDFSTRKYLTQHQ 49
RY+C +C F+ RK+L QHQ
Sbjct: 12 RYECSKCQATFNLRKHLIQHQ 32
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y CN C K FS +L H IH G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C EC K FS LT HQ IH G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQ-VIHTG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K F K TL+ H IH+G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
+ Y C++C K +IQ+S L H +H G + +GP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK--PSGP 43
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C EC K F + L+ HQ IHRG
Sbjct: 13 YECSECGKAFIQKSTLSMHQR-IHRG 37
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
K Y C +C K +I +S L+ H H+GV ++G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K FS K L+ H H G +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
K Y CT+C K +I++S + H +H+G ++G
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C+QC+K + +S L+ H H+GV+
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y C+ C+K FS K L H H GV+
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 6 NACSKNFSAKDTLNKHMDIHKGVR-YQCEE--CPKDFSTRKYLTQHQNAIH 53
C K++S + L H+ H G + Y CE C K FS +HQN H
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + Q + L++H VH+G +
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C+EC K FS +L QHQ +H G
Sbjct: 13 YECKECGKAFSQTTHLIQHQR-VHTG 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K FS L +H IH G +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K + Q S L H +H+G + +GP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK--PSGP 43
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + S+L H +H+G +
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
K Y C +C K + +S+LM H H+G ++G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 146 CTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
C +C K +IQ + L++H +H+G + +GP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEK--PSGP 43
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y C+ C K+F+ K L+ H IH G +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 144 YHCTQCSKFYIQESDLMEHMAVHSG 168
Y CT C K + S+L++H +H+G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C K F+ + L KH IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C++C K + +S L+ HM HSG +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y C+ C K FS+K L HM H G +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K FS + +L+ H IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K +I++S L H +H+G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
+ C C K F+ K TL+ H IH G +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K + CT+C K + ++S L H +H+G +
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C CSK + Q++ L +H H+G + +GP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK--PSGP 43
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K F+ K TL H IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C++C K + ++S L+ H +H+G
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTG 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y+C +C K + S L++H VHSG + +GP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK--PSGP 43
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C +C K + S L H A HSG + +GP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK--PSGP 43
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K F A+ +L H H G +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 146 CTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
C +C K + S L+EH A+H+G ++G
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGESGPSSG 44
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C++C K + + + L EH +H+G R +GP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR--PSGP 43
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 200 WSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAP 240
W+NQ+R ++G + ++ A PP+V G + FR+P
Sbjct: 116 WANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSP 156
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 200 WSNQNRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAP 240
W+NQ+R ++G + ++ A PP+V G + FR+P
Sbjct: 118 WANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSP 158
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K Y C C K + S L++H +VHSG R +GP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER--PSGP 43
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y CN C K F A L H IH G +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K + S+L H +H+G +
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
+QC EC + F+ + +L QHQ IH G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR-IHTG 37
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
+ C+ C + F+ K LN+H IH G +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 30 YQCEECPKDFSTRKYLTQH 48
YQC EC K FS LTQH
Sbjct: 13 YQCSECGKSFSGSYRLTQH 31
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K + C +C K + Q S L H +H+G +
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
++C EC K ++ R +LTQHQ +H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQR-VHTG 37
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K + C +C K + Q S L H VH+G + +GP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK--PSGP 43
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K Y C +C K +I DL H VH+G +
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 27.3 bits (59), Expect = 8.5, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
YQC+EC K FS R L H+ +H G
Sbjct: 11 YQCKECGKSFSQRGSLAVHER-LHTG 35
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 65 RAYKLKKDLLAHTMLEHFGIRHPCSE--CPKTFASRHSLKNHILKIHKAVLYQCNECSTS 122
+ +KL+ L HT + F PC E C K F S H L H L + C+
Sbjct: 17 KNWKLQAHLSKHTGEKPF----PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 72
Query: 123 KDYLTKRDLRRHM 135
+ TK ++++H
Sbjct: 73 LRFTTKANMKKHF 85
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K + C +C K + Q S L H VH+G + +GP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK--PSGP 43
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 144 YHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
Y C +C K + ++ L+ H HSG ++G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ CN C K FS L+KH IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,148,937
Number of Sequences: 62578
Number of extensions: 331529
Number of successful extensions: 1547
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 563
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)