RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11318
(263 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 93.7 bits (234), Expect = 1e-23
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
Y C C K+FS D L +H H G + Y+C EC K FS +K LT+HQ H G + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQC 116
+C +++ + +L AH H G + + C EC K+F+ L+ H + H K Y+C
Sbjct: 81 PECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKP--YKC 136
Query: 117 NECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
EC K + + +L H + H K Y C +C K + + L H H+G
Sbjct: 137 PEC--GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 81.7 bits (203), Expect = 3e-19
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 12 FSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKL 69
+ + G + Y C EC K FS +L +HQ H G + ++C +C +++
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61
Query: 70 KKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDY 125
KKDL H H G + + C EC K+F+ R +L+ H + H K Y C EC K +
Sbjct: 62 KKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKP--YACPEC--GKSF 115
Query: 126 LTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
LR H + H K Y C +C K + +E +L H H+G
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 76.4 bits (189), Expect = 7e-18
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ--NAIHRGIR-F 58
C C K F +K L H H G + ++C +C K + ++ L +H+ N ++R + F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 59 QCNKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH 109
C+ C ++ + +L H M+ H G + CS C + F + L++H++K+H
Sbjct: 68 TCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 67.1 bits (165), Expect = 2e-14
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 38/145 (26%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCS 89
+C C K F ++ YL H H G + ++ C
Sbjct: 8 VECPTCHKKFLSKYYLKVHNR-KHTGEK--------PFE-------------------CP 39
Query: 90 ECPKTFASRHSLKNH--ILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
+C K + + +L H ++ + + C+ C + + + +LR HM H Y
Sbjct: 40 KCGKCYFRKENLLEHEARNCMNRSEQV--FTCSVCQ--ETFRRRMELRLHMVSHTGEMPY 95
Query: 145 HCTQCSKFYIQESDLMEHMA-VHSG 168
C+ CS+ ++Q+ DL HM +HSG
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 57.9 bits (141), Expect = 4e-11
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ C+ C + F + L HM H G Y+C C + F +K L H +H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 30.9 bits (71), Expect = 0.16
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
C C K ++ + L H H+G
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTG 32
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 73.4 bits (181), Expect = 2e-16
Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 46/182 (25%)
Query: 3 YYCNACSKNFSAKDTLNKHMD---IHKGVR-YQCEEC-----PKDFSTRKYLTQHQNAIH 53
+ CS+ F +++ L H++ IH + + C + F + L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 54 RGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH--- 109
G + +C C K+++ +LK H+ + H
Sbjct: 63 TGEKPHKC--------------------------TFEGCRKSYSRLENLKTHL-RSHTGE 95
Query: 110 KAVLYQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCT--QCSKFYIQESDLMEHMAVH 166
K Y C SK + D +H H N K Y C C+K Y S L +H+
Sbjct: 96 KP--YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 167 SG 168
G
Sbjct: 154 HG 155
Score = 29.5 bits (67), Expect = 0.66
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMA---VHSG 168
CS+ + + L+ H+ +H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGE 31
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 72.3 bits (178), Expect = 4e-16
Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 28/167 (16%)
Query: 8 CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRA 66
+ I + + C + FST L H H G Q N
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 67 YKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSK 123
+ C K+F +++ L NHI ++H K + C K
Sbjct: 63 EE-------------------CPREGKSFKAKYKLVNHI-RVHTGEKP--FPCPFPGCGK 100
Query: 124 DYLTKRDLRRHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSG 168
+ +L+ H + H K + C C + + SD +HM VH+
Sbjct: 101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 58.5 bits (142), Expect = 5e-11
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 44/159 (27%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR----------YQCEECPKDFSTRKYLTQHQNAI 52
+C + FS L H+ + +C K F + L H +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84
Query: 53 HRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH-- 109
H G + F C C K FA +LK H + H
Sbjct: 85 HTGEKPFPCPFP--------------------------GCGKIFARSENLKIH-KRTHTG 117
Query: 110 -KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
K ++C + + D ++HM +H + K +
Sbjct: 118 EKP--FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 69.9 bits (172), Expect = 8e-15
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 39/178 (21%)
Query: 2 RYYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQCEE--CPKDFSTRKYLTQHQNAIHRGI 56
RY C+ C ++ L H+ H G + + C+E C K F++ +LT+H H G
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 70
Query: 57 R-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAV 112
+ F C+ C F ++ ++K H K
Sbjct: 71 KNFTCDSD--------------------------GCDLRFTTKANMKKHF-NRFHNIKIC 103
Query: 113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
+Y C+ + K + L+ H H Y C C K + S L H VH+G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 53.4 bits (129), Expect = 6e-09
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIH---KGVRYQC--EECPKDFSTRKYLTQHQNAIHRG 55
+ C+ C F+ K + KH + K Y C E C K F L HQ H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQ 131
Query: 56 IR-FQCN--KCFRAYKLKKDLLAHTMLEHFGIR----HPCSECPKTFASRHSLKNHILKI 108
++C C + + L L H + H G CS KT+ H+ +
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTL---YLKHVAEC 187
Query: 109 HK 110
H+
Sbjct: 188 HQ 189
Score = 31.0 bits (71), Expect = 0.21
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 134 HMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHSG 168
L KRY C C Y + L H+ H+G
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG 39
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 63.2 bits (155), Expect = 4e-13
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
Y C C K+F+ K ++HM +H G+R Y C C K F + +L H IH GI+ ++C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 61 NKCFRAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKN 103
N C + + + H + + ++ + +
Sbjct: 69 NICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 48.6 bits (117), Expect = 8e-08
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 40/140 (28%)
Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHF 82
G + Y C+ C K F+ + +H + +H G+R Y
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLR--------PYG-------------- 39
Query: 83 GIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHF 139
C C K F +H L H +KIH K Y+CN C +K ++ + RH+
Sbjct: 40 -----CGVCGKKFKMKHHLVGH-MKIHTGIKP--YECNIC--AKRFMWRDSFHRHV--TS 87
Query: 140 NGKRYHCTQCSKFYIQESDL 159
K Y + + + S
Sbjct: 88 CTKSYEAAKAEQNTTEASGP 107
Score = 45.9 bits (110), Expect = 7e-07
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 90 ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
+C K+F + H + +H + Y C C K + K L HMK+H K Y C
Sbjct: 14 QCGKSFTHKSQRDRH-MSMHLGLRP--YGCGVCG--KKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 147 TQCSKFYIQESDLMEHMAVHSG 168
C+K ++ H V S
Sbjct: 69 NICAKRFMWRDSFHRH--VTSC 88
Score = 40.1 bits (95), Expect = 8e-05
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C +C K + K RHM +H + Y C C K + + L+ HM +H+G
Sbjct: 11 YPC-QCG--KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 60.5 bits (148), Expect = 2e-12
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
+ C C K FS KD L HM H GV+ Y+C+ C + L +H IH R F+C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKC 67
Query: 61 NKCFRAYKLKKDLLAH 76
C A + L H
Sbjct: 68 QICPYASRNSSQLTVH 83
Score = 56.7 bits (138), Expect = 7e-11
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C + +LNKH+ IH R ++C+ CP LT H H G
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTG 89
Score = 53.6 bits (130), Expect = 8e-10
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
C C K F+ + LK H+ + H K Y+C C L +H+++H + + +
Sbjct: 11 CEVCGKCFSRKDKLKTHM-RCHTGVKP--YKCKTCD--YAAADSSSLNKHLRIHSDERPF 65
Query: 145 HCTQCSKFYIQESDLMEHMAVHSG 168
C C S L H+ H+G
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTG 89
Score = 50.5 bits (122), Expect = 1e-08
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 36/120 (30%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCS 89
++CE C K FS + L H H G+ + YK C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGV--------KPYK-------------------CK 40
Query: 90 ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
C A SL H L+IH + ++C C L H++ H
Sbjct: 41 TCDYAAADSSSLNKH-LRIHSDERP--FKCQIC--PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 44.7 bits (107), Expect = 1e-06
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
++C C K + K L+ HM+ H K Y C C S L +H+ +HS
Sbjct: 9 HKCEVCG--KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Score = 30.9 bits (71), Expect = 0.11
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ C C K + ++ L HM H+G
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTG 33
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 60.2 bits (147), Expect = 3e-12
Identities = 25/108 (23%), Positives = 34/108 (31%), Gaps = 27/108 (25%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
C C K F LN+H H G + Y C C F + ++ H H G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG------ 60
Query: 62 KCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
+ Y C C K F+ L HI ++H
Sbjct: 61 SVGKPYI-------------------CQSCGKGFSRPDHLNGHIKQVH 89
Score = 55.6 bits (135), Expect = 2e-10
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR---YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C F KD ++ H+ H G Y C+ C K FS +L H +H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.9 bits (115), Expect = 1e-07
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHF--NGK 142
C C K F + L H H K Y C C + K + H++ H GK
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKP--YSCPVCG--LRFKRKDRMSYHVRSHDGSVGK 64
Query: 143 RYHCTQCSKFYIQESDLMEHM-AVHSG 168
Y C C K + + L H+ VHSG
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
C C K + L RH H K Y C C + ++ + H+ H G
Sbjct: 8 VACEICG--KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Score = 31.3 bits (72), Expect = 0.080
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
C C K + L H HSG
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSG 32
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 59.4 bits (145), Expect = 5e-12
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
+ C C +NFS D L H+ H G + + C+ C + F+ +H++ I + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQHILPILED 62
Query: 62 KCFRAYKLKKDLLAH 76
K L
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 53.7 bits (130), Expect = 7e-10
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNA--IHRG 55
+ C+ C + F+ D +H DI + ++ + S +L G
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
C C + F+ L HI + H K + C+ C + + + +RH + +
Sbjct: 6 CRICMRNFSRSDHLTTHI-RTHTGEKP--FACDICG--RKFARSDERKRHRDIQ-HILPI 59
Query: 145 HCTQCSKFYIQESDLMEHMA---VHSG 168
+ + + L +A G
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 44.0 bits (105), Expect = 2e-06
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
+QC C +++ L H++ H K + C C + + + + H +
Sbjct: 4 FQCRICM--RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 30.5 bits (70), Expect = 0.11
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C C + + + L H+ H+G
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 58.7 bits (143), Expect = 2e-11
Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 62/168 (36%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
C+K F + KH+ H G R + C EC K F L +HQ +H G + FQC
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTF 67
Query: 63 CFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTS 122
C K F S
Sbjct: 68 --------------------------EGCGKRF-SLDF---------------------- 78
Query: 123 KDYLTKRDLRRHMKLHFNGKRYHC--TQCSKFYIQESDLMEHMAVHSG 168
+LR H+++H + Y C C+K + Q ++L H+ H+
Sbjct: 79 -------NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 40.6 bits (96), Expect = 6e-05
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG-KRYHCTQCSKFYIQESDLMEHMAVHSG 168
C +K + +R+H+ H G + + C +C K +++ S L H VH+G
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Score = 28.3 bits (64), Expect = 1.2
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 3 YYC--NACSKNFSAKDTLNKHMDIHKG 27
Y C + C+K F+ L H+ H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAK 119
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 57.4 bits (140), Expect = 3e-11
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
+ C C K+F TL+ H+ IH R Y C+ C K F + + +H IH G + +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 61 NKCFRAYKLKKDLLAH 76
C +A+ +L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 52.8 bits (128), Expect = 1e-09
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C K F K + KH IH G + ++C+ C K FS L H H G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR-KHTG 82
Score = 51.7 bits (125), Expect = 3e-09
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
C C K+F +L H L IH + Y C C K + K D+++H +H K +
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRP--YPCQYCG--KRFHQKSDMKKHTFIHTGEKPH 58
Query: 145 HCTQCSKFYIQESDLMEHMAVHSG 168
C C K + Q S+L+ H H+G
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 49.0 bits (118), Expect = 3e-08
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIR-HP 87
+ C+ C K F L+ H IH R + C C + + K D+ HT + H G + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C C K F+ +L H + H
Sbjct: 60 CQVCGKAFSQSSNLITH-SRKH 80
Score = 42.0 bits (100), Expect = 9e-06
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ C C K + L H+ +H + + Y C C K + Q+SD+ +H +H+G
Sbjct: 2 FDCKICG--KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 58.3 bits (142), Expect = 3e-11
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCE--ECPKDFSTRKYLTQHQNAIHRGIR 57
+ C C+K + L H H G + YQC+ +C + FS L +HQ H G++
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 58 -FQCNKCFRAYKLKKDLLAHTMLEHFGIR-HPCS--ECPKTFASRHSLKNHILKIH 109
FQC C R + L H H G + C C K FA L H +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH 119
Score = 55.2 bits (134), Expect = 4e-10
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 40/145 (27%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRH 86
+ C C K + +L H H G + +QC+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDF------------------------ 41
Query: 87 PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
+C + F+ LK H + H K +QC C + + L+ H + H K
Sbjct: 42 --KDCERRFSRSDQLKRHQ-RRHTGVKP--FQCKTCQ--RKFSRSDHLKTHTRTHTGEKP 94
Query: 144 YHC--TQCSKFYIQESDLMEHMAVH 166
+ C C K + + +L+ H +H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.2 bits (121), Expect = 3e-08
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 88 CSE--CPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGK 142
C+ C K + L+ H + H K YQC+ + + L+RH + H K
Sbjct: 9 CAYPGCNKRYFKLSHLQMHS-RKHTGEKP--YQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 143 RYHCTQCSKFYIQESDLMEHMAVHSG 168
+ C C + + + L H H+G
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTG 91
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSG 168
+ C +K Y L+ H + H K Y C C + + + L H H+G
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 57.4 bits (140), Expect = 4e-11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
+ C C ++F+ L H H R Y C+ C K F + +L H+ IH + F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKC 76
Query: 61 NKCFRAYKLKKDLLAH 76
+C + + + L H
Sbjct: 77 QECGKGFCQSRTLAVH 92
Score = 54.4 bits (132), Expect = 7e-10
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQC 60
Y C+ C K F +D L H IH + ++C+EC K F + L H+ +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Query: 61 N 61
Sbjct: 105 A 105
Score = 53.6 bits (130), Expect = 9e-10
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 14 AKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKK 71
+ K + + C+ C + F+ L H+ H R + C+ C +A++ +
Sbjct: 1 GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQD 59
Query: 72 DLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH---KAVLYQCN 117
L H + H + C EC K F +L H +H +
Sbjct: 60 HLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSS--PTAA 105
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ C C + + +L H + H + + Y C C K + ++ L +H +HS
Sbjct: 18 FICKFCG--RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Score = 34.3 bits (80), Expect = 0.008
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 130 DLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C C + + + +L+ H H+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD 42
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 56.7 bits (138), Expect = 6e-11
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 3 YYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-F 58
Y C C + FS +L +H+ IH G + +QC C ++FS +LT H H G + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 59 QCNKCFRAYKLKKDLLAH 76
C+ C R + + H
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 54.8 bits (133), Expect = 3e-10
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ C C +NFS D L H+ H G + + C+ C + F+ +H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 87
Score = 53.2 bits (129), Expect = 9e-10
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 87 PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
P C + F+ SL HI +IH K +QC C +++ L H++ H K
Sbjct: 8 PVESCDRRFSQSGSLTRHI-RIHTGQKP--FQCRICM--RNFSRSDHLTTHIRTHTGEKP 62
Query: 144 YHCTQCSKFYIQESDLMEHMAVHSG 168
+ C C + + + + H +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 56.3 bits (136), Expect = 6e-11
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR----YQCEECPKDFSTRKYLTQHQNAIHRGIRF 58
C C K +LN H H + CE C K F + H++ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 59 QCNKC 63
+
Sbjct: 68 APQES 72
Score = 47.8 bits (114), Expect = 8e-08
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAVL----YQCNECSTSKDYLTKRDLRRHMKLHFNG 141
C C T + SL H + H + + C C K + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCG--KRFEKPDSVAAHRSKSHPA 64
Query: 142 KRYHCTQCSK 151
+ S
Sbjct: 65 LLLAPQESSG 74
Score = 43.5 bits (103), Expect = 2e-06
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG---KRYHCTQCSKFYIQESDLMEHMAVH 166
QC C K L H + H R+ C C K + + + H +
Sbjct: 8 LQCEICG--FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 42.8 bits (101), Expect = 5e-06
Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 27/92 (29%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIR-HPC 88
QCE C + L HQ H E PC
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK------------------------HA--ETVAALRFPC 41
Query: 89 SECPKTFASRHSLKNHILKIHKAVLYQCNECS 120
C K F S+ H K H A+L E S
Sbjct: 42 EFCGKRFEKPDSVAAHRSKSHPALLLAPQESS 73
Score = 28.9 bits (65), Expect = 0.42
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
C C Q++ L H H+
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETV 34
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 54.4 bits (132), Expect = 3e-10
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C K FS L +H +H G + Y+C EC K FS L HQ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTS 67
Score = 47.5 bits (114), Expect = 8e-08
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 18 LNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLA 75
+ IH G + Y C EC K FS L QHQ +H G + ++C +C +A+ L+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 76 H 76
H
Sbjct: 61 H 61
Score = 41.7 bits (99), Expect = 8e-06
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C EC K + L +H ++H K Y C +C K + Q S L+ H +H+
Sbjct: 15 YGCVECG--KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+H K Y C +C K + + S L++H VH+G
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG 39
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 54.5 bits (132), Expect = 3e-10
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR---YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C F+ T+ H+ + C C + + L H H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH--FNGKRYHCTQCSKFYIQESDLMEHM-AVHSG 168
Y+C C + ++ H+ N ++HC C ++SDL H+ HS
Sbjct: 16 YECYICH--ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 17 TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR---FQCNKCFRAYKLKKD 72
+ H G + Y+C C F+ + H F C C K D
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 73 LLAHTMLEHFG 83
L H +H
Sbjct: 61 LGVHLRKQHSY 71
Score = 38.7 bits (91), Expect = 1e-04
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ H K Y C C + Q + H+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 53.2 bits (129), Expect = 7e-10
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C+ C +F K L H +H G + Y+C C F+ L H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSG 70
Score = 42.8 bits (102), Expect = 4e-06
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y+C+ C + K +L H +H K Y C C + + ++L H +HSG
Sbjct: 18 YKCDRCQ--ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 40.1 bits (95), Expect = 4e-05
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 30/93 (32%)
Query: 18 LNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH 76
+ H + + Y+C+ C F + L H+ +H G + Y+
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEK--------PYR-------- 47
Query: 77 TMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
C+ C F +LK H +IH
Sbjct: 48 -----------CNICGAQFNRPANLKTH-TRIH 68
Score = 35.1 bits (82), Expect = 0.002
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
H + + K Y C +C + + +L H VH+G
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG 42
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
C+ CS + S+K L H IH R ++C C D L++H G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHG 62
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+C+ECS +K LR H ++H + + C CS Q S+L +HM G
Sbjct: 10 EKCSECS--YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 31.3 bits (72), Expect = 0.043
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
C++CS ++ L H +H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCT 34
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 53.3 bits (129), Expect = 8e-10
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-----YQCEECPKDFSTRKYLTQHQNAIHRGIR 57
Y C+ C K F K L+ H + + C +C K F+ R + +H + G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPD 74
Query: 58 -FQCNKC 63
+
Sbjct: 75 GVEGENS 81
Score = 48.7 bits (117), Expect = 4e-08
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 31/107 (28%)
Query: 17 TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA 75
+ H G + Y C C K F ++ L H + F A+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFV----PAAFV------- 49
Query: 76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNEC 119
CS+C KTF R+++ H +
Sbjct: 50 ------------CSKCGKTFTRRNTMARH-ADNCAGPDG--VEGENS 81
Score = 45.2 bits (108), Expect = 8e-07
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH----FNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C+ C K + K+ L H K + F + C++C K + + + + H +G
Sbjct: 16 YACSHCD--KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 88 CSECPKTFASRHSLKNHILKIH-------KAVLYQCNECSTSKDYLTKRDLRRHMKLHFN 140
CS C KTF + L H K + A + C++C K + + + RH
Sbjct: 18 CSHCDKTFRQKQLLDMH-FKRYHDPNFVPAA--FVCSKCG--KTFTRRNTMARHADNCAG 72
Query: 141 GKRYHCTQCSK 151
Sbjct: 73 PDGVEGENSGP 83
Score = 43.7 bits (104), Expect = 3e-06
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDF 39
+ C+ C K F+ ++T+ +H D G + E
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 36.7 bits (86), Expect = 8e-04
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ H K Y C+ C K + Q+ L H +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 52.4 bits (127), Expect = 1e-09
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C+ C K+FS L+KH H G + Y+C+EC K F R +L H +H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTG 71
Score = 40.5 bits (96), Expect = 3e-05
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 29/89 (32%)
Query: 17 TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA 75
+ + + R Y+C+EC K FS L++H+ H G + YK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEK--------PYK------- 48
Query: 76 HTMLEHFGIRHPCSECPKTFASRHSLKNH 104
C EC K F R L H
Sbjct: 49 ------------CDECGKAFIQRSHLIGH 65
Score = 39.7 bits (94), Expect = 6e-05
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y+C+EC K + DL +H + H K Y C +C K +IQ S L+ H VH+G
Sbjct: 19 YKCDECG--KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 130 DLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
R +RY C +C K + SDL +H H+G
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 50.2 bits (121), Expect = 8e-09
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 3 YYCNACSKNFSAKDTLNKHM--DIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGI 56
Y C CS+ ++ +H + V+ Y C C K+F+ + +T H I I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK-IIHKI 66
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHM--KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV 169
Y+C CS + Y + RH N K Y C C K + ++ ++ H+ + +
Sbjct: 11 YRCKVCS--RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 58 FQCNKCFRAYKLKKDLLAHTM-LEHFGIR-HPCSECPKTFASRHSLKNHILKIHKAV 112
++C C R Y + H + ++ +PC C K F + ++ H+ KI +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KIIHKI 66
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 142 KRYHCTQCSKFYIQESDLMEHM--AVHSGVR 170
Y C CS+ Y S+ H + V+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVK 39
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.8 bits (120), Expect = 9e-09
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ C C++ F+ ++ L +H H + Y C C + F+ R L +H IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFG 83
+ CE C + F+ +++L +H H + + C C RA+ + L+ H H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.9 bits (89), Expect = 2e-04
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA-VHSG 168
+ C C+ + + + L+RH + H N K Y C C++ + + L+ H +HSG
Sbjct: 3 FVCEVCT--RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.2 bits (64), Expect = 0.49
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C C++ + ++ L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 45.7 bits (109), Expect = 5e-07
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 3 YYCNA--CSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR 57
Y C+ C K F + L H H Y+C E C K FS L +H+ +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 58 -FQCNKCFRAYKLKKDLLAHTMLEH 81
+ + C K L H H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.5 bits (98), Expect = 1e-05
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 87 PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
C K F + LK H H Y+C K + L+RH K+H
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 144 YHCTQCSKFYIQESDLMEHM 163
CS + ++H+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHV 81
Score = 34.9 bits (81), Expect = 0.003
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 113 LYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVR 170
+Y C+ + K + L+ H H Y C C K + S L H VH+G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Score = 34.5 bits (80), Expect = 0.005
Identities = 20/108 (18%), Positives = 26/108 (24%), Gaps = 33/108 (30%)
Query: 32 CEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSE 90
E C K F L HQ H ++C
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPH--------------------------EG 38
Query: 91 CPKTFASRHSLKNHILKIHKAVL----YQCNECSTSKDYLTKRDLRRH 134
C K F+ LK H K+H C+ + K H
Sbjct: 39 CDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 44.8 bits (107), Expect = 8e-07
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 87 PCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
C + F++R L +H H K+ + C E + K + K+ L+ HMKLH + +
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKS--FSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 144 YHCTQCSK 151
Y C
Sbjct: 69 YICEFSGP 76
Score = 43.3 bits (103), Expect = 3e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 3 YYCNA--CSKNFSAKDTLNKHMDI-HKGVR-YQCEE--CPKDFSTRKYLTQHQNAIHRGI 56
C+ C + FS + LN H H + + C E C K F+ +K+L +H +H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDT 66
Query: 57 R-FQCNKC 63
R + C
Sbjct: 67 RDYICEFS 74
Score = 40.6 bits (96), Expect = 2e-05
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 30 YQC--EECPKDFSTRKYLTQHQNAIHRGIR-FQCN--KCFRAYKLKKDLLAHTMLEHFGI 84
C C + FS R+YL H+ H + F C C +++ KK L H M H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLHSDT 66
Query: 85 R-HPCSECPKTF 95
R + C +
Sbjct: 67 RDYICEFSGPSS 78
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDF 39
+ C AC K+F+ K L +HM +H R Y CE
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG-KRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
C+ + + ++ L H K K + C + C K + + L EHM +HS
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 45.7 bits (107), Expect = 8e-07
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQC 60
Y C C+ S+ H + + C C F + + +H++ + C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESK-CEYKKLTC 72
Query: 61 NKCFRAYKLKKDLLAHTMLEH 81
+C R +K + H + H
Sbjct: 73 LECMRTFKSSFSIWRHQVEVH 93
Score = 43.0 bits (100), Expect = 7e-06
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 18 LNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAH 76
+ + YQC C S+ H+ C+ F + +LK++ +
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK 64
Query: 77 TMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
+ C EC +TF S S+ H +++H
Sbjct: 65 CEYKKLT----CLECMRTFKSSFSIWRHQVEVH 93
Score = 34.9 bits (79), Expect = 0.006
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 85 RHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRY 144
+ C C +S +H A C CS + + + H K+
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCS--LRFFSPELKQEHES-KCEYKKL 70
Query: 145 HCTQCSKFYIQESDLMEH-MAVHS 167
C +C + + + H + VH+
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.9 bits (61), Expect = 1.3
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 107 KIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
+ +YQC C+ + + H +L N C CS + EH +
Sbjct: 10 PVENKEVYQCRLCN--AKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHES-K 64
Query: 167 SGVRKLT 173
+KLT
Sbjct: 65 CEYKKLT 71
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.9 bits (103), Expect = 1e-06
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRK 171
Y C EC L++H++ H + + YHCT C+ + + +L +HM + +K
Sbjct: 2 YICEECG--IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.9 bits (95), Expect = 2e-05
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
+Y C C L KH+ H VR Y C C F T+ LT+H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 34.3 bits (78), Expect = 0.003
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 85 RHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKR 143
++ C EC LK HI Y C C + + TK +L +HMK + K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYC--NFSFKTKGNLTKHMKSKAHSKK 57
Score = 33.9 bits (77), Expect = 0.005
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 29 RYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH 76
+Y CEEC L +H + C C ++K K +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 29.3 bits (65), Expect = 0.16
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 143 RYHCTQCSKFYIQESDLMEHMAVHSGVR 170
+Y C +C + S L +H+ H+ VR
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR 28
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.4 bits (106), Expect = 1e-06
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 85 RHPCSECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFNG 141
+ C KT+ LK H L+ H K Y C+ + +L RH + H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAH-LRTHTGEKP--YHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVH 166
+ + C +C + + + L HM H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.1 bits (105), Expect = 2e-06
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
Y+C+ C F+ D L +H H G R +QC++C + FS +L H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 41.7 bits (99), Expect = 1e-05
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQNAIHRGIR- 57
C K ++ L H+ H G + Y C + C F+ LT+H H G R
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP 65
Query: 58 FQCNKCFRA 66
FQC KC RA
Sbjct: 66 FQCQKCDRA 74
Score = 32.9 bits (76), Expect = 0.017
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT--QCSKFYIQESDLMEHMAVHSGVRK 171
C K Y L+ H++ H K YHC C + + +L H H+G R
Sbjct: 8 CDYAGCG--KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Score = 31.3 bits (72), Expect = 0.066
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
C K Y + S L H+ H+G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTG 32
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
+ C C + FS D L HM H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.4 bits (103), Expect = 2e-06
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
Y C +C + FS D L +H+ IH G + +QC C ++FS +LT H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 35.0 bits (81), Expect = 0.002
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 95 FASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYI 154
++L N+++ + Y C S + + +L RH+++H K + C C + +
Sbjct: 3 PHPMNNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 155 QESDLMEHMAVHS 167
+ L H+ H+
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 29.6 bits (67), Expect = 0.20
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
+ C C +NFS D L H+ H
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTH 72
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 43.4 bits (103), Expect = 4e-06
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
Y C C F+ D L +H H G + +QC C + FS +L H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 42.6 bits (101), Expect = 9e-06
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 86 HPCS--ECPKTFASRHSLKNHILKIH---KAVLYQCNECSTSKDYLTKRDLRRHMKLHFN 140
H C C K + LK H L+ H K Y+C + +L RH + H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAH-LRTHTGEKP--YKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 141 GKRYHCTQCSKFYIQESDLMEHMAVH 166
K + C C++ + + L HM H
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 38.0 bits (89), Expect = 4e-04
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 12 FSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR------FQCNKCF- 64
+ + IH C K ++ +L H H G + C+ F
Sbjct: 3 SGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFA 58
Query: 65 RAYKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNHILKIH 109
R+ +L + HT G + C C ++F+ L H+ K H
Sbjct: 59 RSDELTRHYRKHT-----GAKPFQCGVCNRSFSRSDHLALHM-KRH 98
Score = 30.7 bits (70), Expect = 0.14
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
+ C C+++FS D L HM H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 29.5 bits (67), Expect = 0.32
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 94 TFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT--QCSK 151
+ S +IH C K Y L+ H++ H K Y CT C
Sbjct: 2 SSGSSGPDLEKR-RIHYCDYPGCT-----KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 152 FYIQESDLMEHMAVHSGVRK 171
+ + +L H H+G +
Sbjct: 56 RFARSDELTRHYRKHTGAKP 75
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 41.4 bits (98), Expect = 8e-06
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 3 YYCNACSKNFSAKDTLNKHM-DIHKGVR-YQCEECPKDFST 41
Y C +C K FS D LN H+ +H R ++C+ S+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKC 63
Y C+ C K FS +L H +H R +C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.2 bits (74), Expect = 0.016
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNEC 119
C C K F+ L HI ++H + ++C
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP--HKCQVW 47
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSG 168
GK Y C C K + + L H+ VH+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 25.6 bits (57), Expect = 3.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMK-LHFNGKRYHCTQCSK 151
Y C C K + L H+K +H + + + C
Sbjct: 13 YICQSC--GKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 41.9 bits (98), Expect = 1e-05
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH----KAVLYQC--NECSTSKDYLTKRD-LRRHMKLH 138
P C +TF++ H L H+ H + + C EC + L H+++H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 139 FNGKRYHCT 147
K +
Sbjct: 86 TGEKSGPSS 94
Score = 36.9 bits (85), Expect = 9e-04
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 21/77 (27%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPC 88
+ C + FST L H H G + C+ C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------------EC 65
Query: 89 SECPKTFASRHSLKNHI 105
K+F +++ L NHI
Sbjct: 66 PREGKSFKAKYKLVNHI 82
Score = 31.9 bits (72), Expect = 0.052
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 10/57 (17%)
Query: 3 YYCNACSKNFSAKDTLNKHM-DIHKGVRYQ---------CEECPKDFSTRKYLTQHQ 49
+C + FS L H+ H G Q C K F + L H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 26.1 bits (57), Expect = 5.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
C K+F AK L H+ +H G +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 25.7 bits (56), Expect = 6.9
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 137 LHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSGVRK 171
+ C + + +L+ H+ H G +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 42.1 bits (98), Expect = 2e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH--KAVLYQCNECSTSKDYLT-KRDLR 132
+ + + C +C + + L H+ + + ++ + + + KR L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMA 164
K C C + DL HM
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 42.1 bits (98), Expect = 2e-05
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 22/109 (20%)
Query: 1 MRYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQC 60
++ C CS + L HM+ R E + R + ++ + +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 61 NKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
K + C C +F S L H++K
Sbjct: 78 QKVLK----------------------CMYCGHSFESLQDLSVHMIKTK 104
Score = 31.7 bits (71), Expect = 0.089
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM 163
+ + + ++ C CS Y +L HM
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 39
Score = 29.0 bits (64), Expect = 0.71
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 96 ASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKL--HFNGKRYHCTQC---S 150
+S S K + A ++C +C S Y T +L HM H+ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDC--SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Query: 151 KFYIQESDLMEHMAVHSGVRKLT 173
++ L+E + L
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKVLK 82
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 39.9 bits (94), Expect = 3e-05
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F L +H H G + +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 30.6 bits (70), Expect = 0.040
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSG 168
K Y C +C K +IQ + L+ H H+G
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 28.3 bits (64), Expect = 0.31
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 3 YYCNACSKNFSAKDTLNKHM-DIHKGVR-YQC 32
Y C C K F +L +H H G +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 25.6 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC K F SL H H
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYH 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F +L +H+ IH G R +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C++C K + + + L EH +H+G
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C+ C K F LN+H IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 39.4 bits (93), Expect = 4e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K FS L+QHQ IH G + +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
KRY C +C K + + S L +H +H+G
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.6 bits (70), Expect = 0.044
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K FS L++H IH G +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+CE+C K ++++ L HQ +H G R +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSS 45
Score = 31.0 bits (71), Expect = 0.036
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K Y + +L H VH+G
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 30.2 bits (69), Expect = 0.054
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K +++K L+ H +H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + ++C EC K ++ R +LTQHQ +H G + +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K Y Q L +H VH+G
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 29.8 bits (68), Expect = 0.092
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K+++ + L +H +H G +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 5e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G R Y+C EC K F + L+ HQ IHRG + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C++C K +IQ+S L H +H G
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 31.3 bits (72), Expect = 0.022
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K F K TL+ H IH+G +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 8e-05
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C +C K FS R LT HQ AIH G + +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C QC K + S L H A+H+G
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.3 bits (72), Expect = 0.021
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K FS + +L H IH G +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 8e-05
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F TQHQ +H G R +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSS 45
Score = 32.2 bits (74), Expect = 0.014
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S +H +H+G
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 32.2 bits (74), Expect = 0.014
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C C K F + +H +H G R
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 8e-05
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
GV+ Y C EC K FS LT HQ IH G + +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S L H +H+G
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 31.7 bits (73), Expect = 0.018
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K FS +L H IH G +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 6.6
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
Y CNEC K + L H +H K
Sbjct: 13 YMCNEC--GKAFSVYSSLTTHQVIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 9e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C+ C K FS LTQHQ +H G + +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.019
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K + + L +H VHSG
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.2 bits (69), Expect = 0.067
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C+ C K FS +L +H +H G +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K + R L HQ +H G + +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K Y + DL H VH+G
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 29.8 bits (68), Expect = 0.085
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K + + L+ H +H G +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 25.2 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C EC K Y + DL H ++H K +
Sbjct: 13 YKCVEC--GKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + ++C EC K FS L HQ IH G +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSS 45
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + S L+ H +H+G
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 29.8 bits (68), Expect = 0.080
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K+FS L H IH G
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.9 bits (92), Expect = 1e-04
Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 7/122 (5%)
Query: 20 KHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTML 79
K++ HKG+ ++ LT Q + R I + + L +
Sbjct: 12 KYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLD-ESSYLYRLLA 68
Query: 80 EHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHF 139
+ C C F+S SLK HI C C K++ + H+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVC--KKEFTSTDSALDHVCKKH 124
Query: 140 NG 141
N
Sbjct: 125 NI 126
Score = 38.0 bits (87), Expect = 5e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR 57
++ C C FS+ +L +H+ + C C K+F++ H H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 34.1 bits (77), Expect = 0.012
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 18 LNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT 77
L + + ++ C C FS+ L QH C C + + L H
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHV 120
Query: 78 MLEHFGIR 85
+H
Sbjct: 121 CKKHNICV 128
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y C C K F +L QH +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQ 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K ++ + L +H+ VH+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 31.3 bits (72), Expect = 0.022
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F LN+H+ +H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ Y C EC K F+ +LT+HQ IH
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTR 37
Score = 31.4 bits (72), Expect = 0.025
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
+ K Y+C +C K + + L H +H+ ++G
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 26.4 bits (59), Expect = 1.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y CN C K F+ L +H IH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTR 37
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G R ++C EC K F +L QHQ IH G + +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C +C K +IQ + L++H +H+G
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 29.0 bits (66), Expect = 0.14
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ CN C K+F L +H IH G +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
+ Y+CE+C K ++ R L HQ +H G + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGPSS 45
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K Y + +L H VH G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 29.0 bits (66), Expect = 0.15
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K ++ + L+ H +H G +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 24.4 bits (54), Expect = 6.6
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C +C K Y + +L H ++H K +
Sbjct: 13 YKCEDC--GKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F LT HQ IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.022
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S+L H +H+G
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.2 bits (69), Expect = 0.074
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F A L H IH G +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+CNEC K + +L H +H K +
Sbjct: 13 YKCNEC--GKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + YQC EC K FS L +HQ +H G + +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K FS L +H +H G +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.033
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
GK Y C +C K + Q S L H VH+G
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C+ C K F +L QH + +H G R +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.021
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K + S L++H +VHSG
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 28.6 bits (65), Expect = 0.23
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K F L +H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+G + YQC EC K FS LTQH H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTR 37
Score = 31.0 bits (71), Expect = 0.029
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C++C K + L +H H+
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 30.2 bits (69), Expect = 0.066
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K+FS L +H H +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 24.8 bits (55), Expect = 5.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
YQC+EC K + L +H H K +
Sbjct: 13 YQCSEC--GKSFSGSYRLTQHWITHTREKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F R L HQ A H G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.016
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S L H A HSG
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 31.0 bits (71), Expect = 0.034
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y CN C K F A+ +L H H G +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G R Y+C EC K F+ + L HQ IH G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C++C K + ++S L+ H +H+G
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 31.7 bits (73), Expect = 0.018
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K F+ K TL H IH G +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 9.6
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C+EC K + K L H ++H K +
Sbjct: 13 YECSEC--GKAFARKSTLIMHQRIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G R ++C +C K F QH+ IH G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTG 37
Score = 32.5 bits (75), Expect = 0.009
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C+ C KF++Q S+ ++H +H+G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 27.9 bits (63), Expect = 0.48
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C+ C K F +H IH G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTG 37
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y CEEC K F L +HQ IH G
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y+C +C K +I +S L EH +H+G
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 30.2 bits (69), Expect = 0.067
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C C K F L +H IH G +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + ++C EC K F+ + L+ HQ IH G + +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.013
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
GK + CT+C K + ++S L H +H+G
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 31.3 bits (72), Expect = 0.025
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C K F+ K TL+ H IH G +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 1.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
++C EC K + K L H K+H K +
Sbjct: 13 FECTEC--GKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C+EC K FS +L QHQ +H G + +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.005
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q + L++H VH+G
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K FS L +H +H G +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C C K FS R+ L+ HQ IH G + +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K + L H +HSG
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.9 bits (71), Expect = 0.029
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C+ C K FS + +L+ H IH G +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K FS L +HQ IH G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.004
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H +H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.3 bits (72), Expect = 0.022
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K FS L +H IH G +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++C EC K FS L HQ IH G
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTG 37
Score = 31.7 bits (73), Expect = 0.017
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + S L H +H+G
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 30.9 bits (71), Expect = 0.031
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C K+FS L H IH G +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C EC K F+ +L +H+ IH G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTG 37
Score = 30.9 bits (71), Expect = 0.038
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H +H+G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.4 bits (67), Expect = 0.13
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F+ L +H IH G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y C+EC K FS L +H+ +H G + +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.019
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y+C +C K + + L++H +HSG
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 30.6 bits (70), Expect = 0.044
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K+FS L KH +H G +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 3e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + +QCEEC K F+ +L HQ +H G + +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.011
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + Q S L H VH+G
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 30.2 bits (69), Expect = 0.063
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K F+ L+ H +H G +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C+ C K F+ + +L QHQ H G + +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y C CSK F+ K L +H H G +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C CSK + Q++ L +H H+G
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 25.6 bits (57), Expect = 3.1
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C C K F + L H K H K +
Sbjct: 15 CKVCSKAFTQKAHLAQH-QKTHTGEKP--SGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++C EC K FS R L H +H G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTG 37
Score = 32.1 bits (74), Expect = 0.013
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + + S L H +H+G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 31.3 bits (72), Expect = 0.024
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K FS + LN H +H G +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 5.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
++C EC K + + L H KLH K +
Sbjct: 13 FKCVEC--GKGFSRRSALNVHHKLHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G++ Y C EC K F ++ YL H H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTG 37
Score = 31.3 bits (72), Expect = 0.027
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + +S L+ H H+G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 29.4 bits (67), Expect = 0.11
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y CN C K F +K L H H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 24.8 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
Y CNEC K + +K L H + H
Sbjct: 13 YVCNEC--GKAFRSKSYLIIHTRTHTGESGPSS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C +C K F + L HQ IH G
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTG 37
Score = 31.7 bits (73), Expect = 0.019
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K +I++S L H +H+G
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 31.0 bits (71), Expect = 0.031
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K+F K L+ H IH G
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ +QC EC + F+ + +L QHQ IH G
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTG 37
Score = 32.1 bits (74), Expect = 0.011
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ K + C +C + + +S L +H +H+G
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 30.6 bits (70), Expect = 0.041
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C+ C + F+ K LN+H IH G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTG 37
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F +L +HQ IH G + +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + + S L H +H+G
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 28.6 bits (65), Expect = 0.22
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C+ C K F L +H IH G +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 4e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + + C +C K FS L QH+ IH G
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTG 37
Score = 31.7 bits (73), Expect = 0.020
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C K FS LN+H IH G +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.022
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C C K + L +H +H+G
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F+ +L HQ IH G++ +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H +H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 29.8 bits (68), Expect = 0.087
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F+ L H IH GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.4 bits (85), Expect = 4e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
GV+ Y C +C K FS + L HQ H G++ +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPS 44
Score = 31.3 bits (72), Expect = 0.028
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+QC+K + +S L+ H H+G
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 30.6 bits (70), Expect = 0.042
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C+K FS K L H H GV+
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 24.0 bits (53), Expect = 9.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y C++C +K + K L H + H K +
Sbjct: 13 YGCSQC--AKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 4e-04
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y C EC K FS++ YL H H G
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSG 37
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C++C K + +S L+ HM HSG
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 31.0 bits (71), Expect = 0.030
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C+ C K FS+K L HM H G +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y C+EC K + +K L HM+ H K +
Sbjct: 13 YGCSEC--GKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F+ +LT H IH G + +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H +H+G
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.9 bits (71), Expect = 0.030
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y CN C K F+ L H IH G +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 25.1 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C+EC K F L NH +IH K +
Sbjct: 15 CNECGKVFTQNSHLTNH-WRIHTGEKP--SGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G Y+C EC K FS + L HQ H G + +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.024
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C +C K + ++ L+ H H+G
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K FS K L H H G +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y C EC K F+ R L +HQ IH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTK 37
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S+L++H +H+
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 30.6 bits (70), Expect = 0.041
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C C K F+ + L KH IH +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 24.8 bits (55), Expect = 6.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y C EC K + + +L +H K+H K +
Sbjct: 13 YICAEC--GKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G R Y C EC K+F +L +H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFR 37
Score = 31.7 bits (73), Expect = 0.020
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C +C K + + S L+EH+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 30.9 bits (71), Expect = 0.033
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y CN C KNF L +H+ H +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.5 bits (62), Expect = 0.51
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y CNEC K++ L H+K HF K +
Sbjct: 13 YGCNECG--KNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 24.4 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C+EC K F L H LK H
Sbjct: 15 CNECGKNFGRHSHLIEH-LKRH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y C+ C K F L +HQ IH G + +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K + ++L+ H +H+G
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.9 bits (71), Expect = 0.039
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K F L +H IH G +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 2.5
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
Y C+ C K + +L RH ++H K +
Sbjct: 13 YVCDYC--GKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 5e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++C+EC K F +L H IH G
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTG 37
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + Q L H+ +H+G
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C K F L H+ IH G +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 5e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F+ + LTQHQ IH G + +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.004
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q+++L +H +H+G
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.9 bits (71), Expect = 0.033
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K F+ K L +H IH G +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 6e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++C EC K F+T+ L HQ H G
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTG 37
Score = 30.1 bits (69), Expect = 0.061
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C++C K + +S+L+ H H+G
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 29.8 bits (68), Expect = 0.083
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C+ C K F+ K L H H G +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 24.0 bits (53), Expect = 9.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
++C+EC K + TK +L H + H K +
Sbjct: 13 FECSEC--QKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 6e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C EC K F YL++HQ IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S L H +H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y CN C K F L++H IH G +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 3.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+CNEC K + L RH ++H K +
Sbjct: 13 YKCNEC--GKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 5.4
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C+EC K F L H +IH K +
Sbjct: 15 CNECGKVFRHNSYLSRH-QRIHTGEKP--SGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 6e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G R Y+C EC K F T+ L H+ H G + +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y C C K F K +L H H G +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C +C K + +S L+ H H+G
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 24.8 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C EC K F ++ SL H + H K +
Sbjct: 15 CIECGKAFKTKSSLICH-RRSHTGEKP--SGPSS 45
Score = 24.4 bits (54), Expect = 8.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C EC K + TK L H + H K +
Sbjct: 13 YECIEC--GKAFKTKSSLICHRRSHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 6e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + ++C EC K F+ LT HQ IH G + +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.013
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + Q S L H +H+G
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 30.6 bits (70), Expect = 0.041
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ CN C K F+ +L H IH G +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 6e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
GV Y+C +C K FS + L HQ +H + +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.035
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C+QC K + + L+ H +H+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 30.2 bits (69), Expect = 0.061
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K+FS K L H +H +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 25.6 bits (57), Expect = 2.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
Y+C++C K + K L H ++H K +
Sbjct: 13 YKCSQC--EKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 25.2 bits (56), Expect = 4.1
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
CS+C K+F+ + L H ++H
Sbjct: 15 CSQCEKSFSGKLRLLVH-QRMH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C +C K F+ + L HQ H G R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSS 45
Score = 30.6 bits (70), Expect = 0.042
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K+F+ K L H H G R
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 30.6 bits (70), Expect = 0.053
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K + +S L H H+G
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 26.0 bits (58), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C++C K + K LR H K H + +
Sbjct: 13 YKCSDC--GKSFTWKSRLRIHQKCHTGERHSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F+ +L +H+ IH G + +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.040
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H +H+G
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.8 bits (68), Expect = 0.093
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F+ L +H IH G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C EC K F+ +L +H+ +H G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPS 44
Score = 31.3 bits (72), Expect = 0.028
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L H VH+G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 29.8 bits (68), Expect = 0.100
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F+ L +H +H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
+ C C K FS++ YL HQ H + +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPS 42
Score = 30.6 bits (70), Expect = 0.039
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C+ C K FS+K L H H +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.4 bits (67), Expect = 0.12
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C+ C K + +S L+ H H+
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAE 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + ++CEEC K F+ L HQ +H G + +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + Q S L H VH+G
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 29.0 bits (66), Expect = 0.19
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K F+ L+ H +H G +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 9.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
++C EC K + L H ++H K +
Sbjct: 13 FKCEEC--GKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 8e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G R Y C C K F+ R L +HQ IH G + +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.006
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y CT C K + S+L++H +H+G
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.9 bits (71), Expect = 0.032
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K F+ + L KH IH G +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 9.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
Y C C K + + +L +H K+H K
Sbjct: 13 YICTVC--GKAFTDRSNLIKHQKIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 8e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+CEEC K F R+ L H +H G
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH-MVHTG 37
Score = 32.5 bits (75), Expect = 0.010
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K +I DL H VH+G
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 31.4 bits (72), Expect = 0.027
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C C K F + L H +H G +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C EC K ++ +RDL H +H K +
Sbjct: 13 YKCEEC--GKGFICRRDLYTHHMVHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.5 bits (83), Expect = 8e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C EC K F+T+ L HQ H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTG 37
Score = 30.9 bits (71), Expect = 0.037
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + +S+LM H H+G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 30.5 bits (70), Expect = 0.043
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y CN C K F+ K L H H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 24.7 bits (55), Expect = 5.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
Y+CNEC K + TK +L H + H
Sbjct: 13 YECNEC--QKAFNTKSNLMVHQRTHTGESGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 8e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C C K F+ + L HQ IH G + +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K + ++S L H +H+G
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.2 bits (69), Expect = 0.055
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K+F+ K L+ H IH G +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 9e-04
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++C+ C K F R L +H +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTA 37
Score = 31.7 bits (73), Expect = 0.017
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C+ C K+F + LN+H +H +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.018
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C C K + S L H VH+
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + C EC K F+ + L HQ IH G R +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ C++C K + +++L+ H +H+G
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 30.5 bits (70), Expect = 0.051
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C+ C K F+ K L H IH G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 24.4 bits (54), Expect = 8.2
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
+ C+EC K + K +L H K+H + +
Sbjct: 13 FICSEC--GKVFTHKTNLIIHQKIHTGERPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y+C+ C K+FS +L HQ +H G + +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.033
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K + Q S L H VH+G
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 28.6 bits (65), Expect = 0.22
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K FS L H +H G +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C F TL H+ IH G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C + L H+ +H+G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y CE C F + L H IH G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTG 36
Score = 26.7 bits (60), Expect = 1.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+PC C F +LK+H+ +IH
Sbjct: 12 YPCEICGTRFRHLQTLKSHL-RIH 34
Score = 24.4 bits (54), Expect = 6.2
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
Y C C + + L+ H+++H
Sbjct: 12 YPCEIC--GTRFRHLQTLKSHLRIH 34
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y C EC K F + +L +H+ IH G
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTG 37
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K +IQ+S L H +H+G
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y CN C K+F K LN+H IH G +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y CNEC K ++ K L RH ++H K +
Sbjct: 13 YICNEC--GKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C+ C K F LT HQ IH G
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTG 37
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y C+ C K+F +L H IH G +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C K + S L H +H+G
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 24.8 bits (55), Expect = 4.8
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C C K+F SL H +IH K +
Sbjct: 15 CDVCHKSFRYGSSLTVH-QRIHTGEKP--SGPSS 45
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.3 bits (82), Expect = 0.001
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + + C+EC K+F L HQ +H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMG 37
Score = 32.2 bits (74), Expect = 0.011
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + S L H VH G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 28.7 bits (65), Expect = 0.22
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C+ C KNF L H +H G
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMG 37
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G Y+C EC K FS + L HQ H G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQ-KTHSG 37
Score = 31.3 bits (72), Expect = 0.024
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C +C K + ++ L+ H HSG
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 29.8 bits (68), Expect = 0.083
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C C K FS KD L H H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C EC K F + L H+ H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHE-RTHAG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K +I +S L+ H H+G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 29.0 bits (66), Expect = 0.17
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y CN C K F K L H H GV
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C EC K F+ R L HQ IH G
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQ-KIHTG 37
Score = 32.1 bits (74), Expect = 0.013
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + S+L H +H+G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.6 bits (70), Expect = 0.051
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y C C K F+ + L H IH G +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 4.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
Y+C EC K + + +L H K+H K
Sbjct: 13 YRCAEC--GKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + Y+C+EC K F +L QH+ +H G R +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPSS 45
Score = 31.7 bits (73), Expect = 0.018
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K +IQ L +H VH+G
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 31.4 bits (72), Expect = 0.021
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y C C K F LN+H +H G R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 24.4 bits (54), Expect = 6.8
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
Y+C EC K ++ L +H ++H + +
Sbjct: 13 YECKEC--RKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 24.4 bits (54), Expect = 8.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C EC KTF L H ++H ++ +
Sbjct: 15 CKECRKTFIQIGHLNQH-KRVHTGERS--SGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + ++C C K F + L HQ IH G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + CT C K + + +L+ H +H+G
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 31.4 bits (72), Expect = 0.023
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C K+F AK L H IH G +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 25.2 bits (56), Expect = 3.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
++C C K + K +L H ++H K +
Sbjct: 13 FECTHC--GKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G R ++C EC K F R +L H +H + +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS 44
Score = 31.7 bits (73), Expect = 0.017
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C +C K + + S L H+ +HS
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 29.4 bits (67), Expect = 0.12
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ CN C K F + L H+ +H +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 25.2 bits (56), Expect = 3.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
++CNEC K + + L H++LH K +
Sbjct: 13 FKCNEC--GKGFGRRSHLAGHLRLHSREKSSGPS 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y+C+EC K F + LT H+ IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHER-IHTG 35
Score = 29.5 bits (67), Expect = 0.093
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C K+F K +L H IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 29.5 bits (67), Expect = 0.11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ Y C +C K + Q+ L H +H+G
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 24.1 bits (53), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC K+F + SL H +IH
Sbjct: 13 CQECGKSFRQKGSLTLH-ERIH 33
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C EC K F+ +L +H+ IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTG 37
Score = 33.2 bits (77), Expect = 0.005
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q S L+ H +H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 29.0 bits (66), Expect = 0.15
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
Y CN C K F+ L +H IH G +
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
G + Y C EC K FS + L+ HQ H G + +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y CN C K FS K L+ H H G +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.043
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C K + Q+S L H H+G
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 25.6 bits (57), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 88 CSECPKTFASRHSLKNHILKIH---KAVLYQCNE 118
C+EC KTF+ + L H + H K +
Sbjct: 15 CNECGKTFSQKSILSAH-QRTHTGEKP--SGPSS 45
Score = 24.8 bits (55), Expect = 5.1
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
Y CNEC K + K L H + H K +
Sbjct: 13 YGCNEC--GKTFSQKSILSAHQRTHTGEKPSGPSS 45
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C QC K + Q L H S
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 31.1 bits (71), Expect = 0.026
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C K+F+ + +L H
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 30.7 bits (70), Expect = 0.045
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C +C K F+ R L HQ
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ-RSCSQ 36
Score = 24.9 bits (55), Expect = 4.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 88 CSECPKTFASRHSLKNH 104
C +C K+F R SL H
Sbjct: 14 CGQCGKSFTQRGSLAVH 30
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y C+EC K F L +HQ +H G
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSG 37
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y+C +C K + S L++H VHSG
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 32.5 bits (75), Expect = 0.008
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEE 34
Y C C K+F L KH +H G +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 5.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
Y C EC K + L +H ++H K +
Sbjct: 13 YNCKEC--GKSFRWASCLLKHQRVHSGEKPSGPSS 45
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C C ++Q + L H+ +H+G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+CE C F +L H IH G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTG 36
Score = 30.2 bits (69), Expect = 0.064
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C F L H+ IH G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTG 36
Score = 24.0 bits (53), Expect = 9.6
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C C F L+ H+ IH
Sbjct: 14 CETCGARFVQVAHLRAHV-LIH 34
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 0.002
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 17 TLNKHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLA 75
+ K IH G R +C +C F R L++ + C KC + + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNK 57
Query: 76 H 76
Sbjct: 58 D 58
Score = 34.6 bits (79), Expect = 0.003
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQ 49
C+ C F + TL++ CE+C KD L + +
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAALNKDE 59
Score = 30.4 bits (68), Expect = 0.11
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLT 173
+C++C ++ + L R K C +C K QE+ L + SG K T
Sbjct: 19 QKCSKCG--IIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESG--KKT 67
Query: 174 TGP 176
+GP
Sbjct: 68 SGP 70
Score = 30.0 bits (67), Expect = 0.12
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEH 162
+ K+H + C++C +I+ S L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 30.0 bits (67), Expect = 0.15
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
C C K+ + LNK G
Sbjct: 40 PMCEKCRKDSCQEAALNKDEGNESG 64
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 0.002
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G ++C +C + F+ R YL QH+ H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THAR 37
Score = 31.4 bits (71), Expect = 0.026
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
+ C++C + + Q + L++H H+ ++G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 29.1 bits (65), Expect = 0.16
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C+ C + F+ ++ L +H H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 34.1 bits (79), Expect = 0.002
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C QC K + Q+ L+ H+ VH+G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C++C K FS + L H +H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTG 36
Score = 30.6 bits (70), Expect = 0.042
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K FS K +L H+ +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 24.1 bits (53), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C +C K F+ + SL HI ++H
Sbjct: 14 CDQCGKAFSQKGSLIVHI-RVH 34
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G Y+C EC K F+ + L HQ H G
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQR-THAG 35
Score = 30.9 bits (71), Expect = 0.033
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K F+ KD L H H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.12
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
Y C++C K + ++ L+ H H+G
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAG 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + ++CEEC K F T HQ H G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSG 37
Score = 31.4 bits (72), Expect = 0.025
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C K + S H HSG
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 29.8 bits (68), Expect = 0.075
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C K F H H G +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 24.4 bits (54), Expect = 7.3
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
++C EC K + T H + H K +
Sbjct: 13 FKCEEC--GKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNK 62
G + ++C EC FS L HQN +H G + +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.044
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
+ C C FS +L H ++H G +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.079
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C + Q S L H VH G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 26.4 bits (59), Expect = 1.7
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
++C EC + LR H +H K +
Sbjct: 13 WKCREC--DMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 24.4 bits (54), Expect = 6.9
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC F+ SL+ H +H
Sbjct: 15 CRECDMCFSQASSLRLH-QNVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.005
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
+C EC K F + L HQ H + +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQR-THVDDKHSGPS 44
Score = 31.0 bits (71), Expect = 0.035
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K CT+C K + +S L+ H H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 29.8 bits (68), Expect = 0.076
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
C C K F K L H H +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 25.6 bits (57), Expect = 2.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
+C EC K + K L H + H + K +
Sbjct: 13 CKCTEC--GKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (75), Expect = 0.005
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 29 RYQCEECPKDFSTRKYLTQHQNAIHRGIR 57
++C +C K FS KYLTQH+ RG++
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 25.2 bits (54), Expect = 4.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
+ CN C K FS L +H IH
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
G + Y+C +C K F+ + L HQ H G
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTG 37
Score = 30.9 bits (71), Expect = 0.030
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C+ C K + ++S L H H+G
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 30.6 bits (70), Expect = 0.043
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR-YQC 32
Y C+ C K F+ K L+ H H G R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 24.8 bits (55), Expect = 5.6
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
Y+C++C K + K L H + H + +
Sbjct: 13 YKCSDC--GKAFTRKSGLHIHQQSHTGERHSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.7 bits (75), Expect = 0.008
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C EC + FS L QHQ +H
Sbjct: 11 YSCAECKETFSDNNRLVQHQK-MHTV 35
Score = 30.4 bits (69), Expect = 0.048
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K Y C +C + + + L++H +H+
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 29.2 bits (66), Expect = 0.14
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C + FS + L +H +H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C+EC +TF+ + L H K+H
Sbjct: 13 CAECKETFSDNNRLVQHQ-KMH 33
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.4 bits (73), Expect = 0.032
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 14 AKDTLNKHMDIHK-GVRYQCEECPKDFSTRKYLTQHQNAIHRGIR----FQCNKCFRAYK 68
A + + K Y+C+ C T H ++ H + + C +C K
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 69 LKKDLLAHTMLEHFG 83
L H + H G
Sbjct: 62 RYDALSEHNLKYHPG 76
Score = 30.9 bits (69), Expect = 0.12
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 48 HQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIR----HPCSECPKTFASRHSLKN 103
+Q ++C C H EH + + C EC +L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 104 HILKIH 109
H LK H
Sbjct: 69 HNLKYH 74
Score = 30.1 bits (67), Expect = 0.20
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 2 RYYCNACSKNFSAKDT-------LNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHR 54
Y C C+ F D ++H ++ Y C EC L++H H
Sbjct: 18 GYECKYCT--FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Query: 55 G 55
G
Sbjct: 76 G 76
Score = 25.5 bits (55), Expect = 8.2
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 131 LRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM-AVHSGVRK 171
+ + Y C C+ + H+ + H V
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL 47
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.1 bits (70), Expect = 0.033
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR-YQCEEC 35
+ C C K F LN+H H G + Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.051
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGP 176
K+ C C K + L H HSG + ++GP
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP 45
Score = 28.0 bits (62), Expect = 0.38
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCS 150
C C K + L RH H K Y S
Sbjct: 13 VACEICG--KIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 26.8 bits (59), Expect = 1.0
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 85 RHPCSECPKTFASRHSLKNHILKIHKAVL-YQCNECS 120
+ C C K F + L H L H Y S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSS 47
Score = 26.1 bits (57), Expect = 2.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 29 RYQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCNKC 63
+ CE C K F +L +H+ H G + +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 33.1 bits (75), Expect = 0.040
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 59 QCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNE 118
N+ +L D A + ++ P C RH + + C +
Sbjct: 58 VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM--DCPQ 115
Query: 119 CSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHM 163
C K + H+ ++ C C + D H
Sbjct: 116 CQRP---FQKFHINIHILKDCPRRQVSCDNC-AASMAFEDKEIHD 156
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.049
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
G + +QC+EC +FS L +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 30.2 bits (69), Expect = 0.061
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C C NFS +L KH+ H+
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHER 37
Score = 29.5 bits (67), Expect = 0.11
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C +C + L +H+ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 25.2 bits (56), Expect = 3.5
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ 148
+QC EC ++ L +H++ H +
Sbjct: 13 FQCKEC--GMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 24.5 bits (54), Expect = 8.3
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC F+ SL H L+ H
Sbjct: 15 CKECGMNFSWSCSLFKH-LRSH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.050
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 25 HKGVRYQCEECPKDFSTRKYLTQHQNAIHR 54
G YQC C + L H A H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHV-ASHG 204
Score = 33.3 bits (75), Expect = 0.095
Identities = 12/48 (25%), Positives = 15/48 (31%)
Query: 120 STSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHS 167
+TS +G Y C CS DL H+A H
Sbjct: 157 ATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 31.0 bits (69), Expect = 0.41
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
Y C+ CS + L+ H+ H
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASH 203
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.063
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 47 QHQNAIHRGIRFQCNKCFRA-YKLKKDLLAHTMLEHFGIR-HPCSECPKTFASRHSLKNH 104
Q Q AIH C C K L H + C C K F S+ L H
Sbjct: 14 QWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Query: 105 ILKIHKA 111
+ H A
Sbjct: 74 TMAEHSA 80
Score = 26.1 bits (56), Expect = 5.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 106 LKIHKAVLYQCNECSTSKDYLTKRDLRRHMKL-HFNGKRYHCTQCSKFYIQESDLMEH-M 163
IH+ C C+ T L++HM++ C C K + ++ L H M
Sbjct: 17 RAIHERGEAVCPTCNVVT-RKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 164 AVHS 167
A HS
Sbjct: 76 AEHS 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.4 bits (70), Expect = 0.078
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 2 RYYCNACSK-NFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIH 53
C C + L KHM+ K + C C K + + H A H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 30.2 bits (67), Expect = 0.18
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 36 PKDFSTRKYLTQHQNAIHRGIRFQCNKC-FRAYKLKKDLLAHTMLEHFGIRHPCSECPKT 94
P ++ Q I C C K + L H M C C K
Sbjct: 13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKH-MENCKQEMFTCHHCGKQ 71
Query: 95 FASRHSLKNHILKIHKA 111
S +K H++ H +
Sbjct: 72 LRSLAGMKYHVMANHNS 88
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.1 bits (72), Expect = 0.13
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG-VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCN 61
+Y K + H ++ +G R Q E+ + + L I
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP-------IHLSVL 233
Query: 62 KC 63
+
Sbjct: 234 RQ 235
Score = 31.3 bits (70), Expect = 0.22
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 22 MDIHKG----VRYQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHT 77
DI G V Y E+ K + T H+N R Q K + +DL
Sbjct: 170 RDIRPGEWLRVWY-SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP- 227
Query: 78 MLEHFGIRHPCSECPK 93
I K
Sbjct: 228 ------IHLSVLRQGK 237
Score = 26.3 bits (57), Expect = 9.8
Identities = 5/46 (10%), Positives = 10/46 (21%)
Query: 60 CNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHI 105
+ H L R + + + L+ I
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (63), Expect = 0.25
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 146 CTQCSKFYIQESDLMEHMAVHSGVRKLTTG 175
C +C K + S L+EH A+H+G ++G
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGESGPSSG 44
Score = 25.2 bits (54), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 31 QCEECPKDFSTRKYLTQHQNAIHRG 55
+C+EC K F L +HQ A+H G
Sbjct: 14 ECQECGKIFRHSSLLIEHQ-ALHAG 37
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.27
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVRK 171
K + C +C + + Q L+EH +H G +
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 27.1 bits (59), Expect = 0.90
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
+QC EC + F L +HQ +H G
Sbjct: 13 HQCRECGEIFFQYVSLIEHQ-VLHMG 37
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.27
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 25 HKGVRYQCEECPKDFSTRKYLTQHQ 49
H RY+C +C F+ RK+L QHQ
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQ 32
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.1 bits (63), Expect = 0.29
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIH 25
+ C C ++FS D L H H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.3 bits (61), Expect = 0.61
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
+ K + C C + + + L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 0.88
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
G++ +QC +C + FS +L H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.9 bits (69), Expect = 0.43
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 22 MDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHR 54
I Y C C FST L++H + HR
Sbjct: 109 TPIVNPSSYVCNVCNARFSTMSALSEHLRSDHR 141
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 27.7 bits (62), Expect = 0.56
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C C FS D L++H H GV+
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 134 HMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSGVRK 171
K + CT C + + +L H HSGV+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 25.3 bits (56), Expect = 3.2
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCT 147
+ C + +L RH + H K +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.1 bits (60), Expect = 0.57
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C + F+ R L +H IH G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.8 bits (59), Expect = 0.75
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR 29
++ C C K F D L+KH+ +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 27.1 bits (59), Expect = 0.86
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C+EC F+ SLK H L+ H
Sbjct: 13 CNECDCRFSEEASLKRHTLQTH 34
Score = 26.3 bits (57), Expect = 1.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 3 YYCNACSKNFSAKDTLNKHM 22
++CN C FS + +L +H
Sbjct: 11 FFCNECDCRFSEEASLKRHT 30
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 1.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
Y C+ C + F + L HM++H+ R
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.1 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHR 54
Y C C ++F + + L H N HR
Sbjct: 7 YTCSFCKREFRSAQALGGHMNV-HR 30
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.0 bits (57), Expect = 1.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 2 RYYCNACSKNFSAKDTLNKHMDIHKGVR 29
++ C C K F D L H+ +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 1.5
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 85 RHPCSECPKTFASRHSLKNHIL-KIHK 110
H C C + F +LK H K HK
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRSKDHK 76
Score = 26.6 bits (58), Expect = 5.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 2 RYYCNACSKNFSAKDTLNKHM 22
+ C AC++ F L H
Sbjct: 50 LHRCLACARYFIDSTNLKTHF 70
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 27.0 bits (60), Expect = 1.7
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVH 166
+ C+ K Y L+ H + H K + C+ C + + + +L H H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 26.6 bits (59), Expect = 2.2
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 8 CSKNFSAKDTLNKHMDIHKGVR-YQC--EECPKDFSTRKYLTQHQ 49
C K + L H H G + + C + C + F+ L++H+
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 26.6 bits (59), Expect = 2.5
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 128 KRDLRRHMKLHFNGKRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
+ + C+ C K Y + S L H H+G
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG 44
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 26.2 bits (58), Expect = 1.8
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 17/42 (40%)
Query: 111 AVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKF 152
+Y CNEC R+HCT C +
Sbjct: 4 RFVYTCNECKHH-----------------VETRWHCTVCEDY 28
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 88 CSECPKTFASRHSLKNHILKIHKAV 112
C+ C K F S L++HI ++H A
Sbjct: 10 CALCLKKFVSSIRLRSHIREVHGAA 34
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.0 bits (56), Expect = 2.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C F KD ++ H+ H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 25.3 bits (56), Expect = 2.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR 29
+ C C K F+ D L +H H G +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 140 NGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+GK Y C QCS +++L H+ H+G
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTG 34
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.3 bits (62), Expect = 3.0
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHK 26
YC CS+ F H+
Sbjct: 293 IYCPFCSRWFKTSSVFESHLVGKI 316
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.1 bits (54), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K FS K + H +H G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 3.8
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 216 SWISNGIGATTPPSVMGKTKLFRAPDPRFRNALRF 250
+W S A P + + +
Sbjct: 33 AWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHA 67
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 24.7 bits (53), Expect = 3.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C + F+ L +H+ IH G
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTG 28
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI 177
LH N C +C Y+++ ++ M + + R T
Sbjct: 132 LHGNMFVEECAKCKTQYVRD-TVVGTMGLKATGRLCTVAKA 171
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.4 bits (61), Expect = 5.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 137 LHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPI 177
LH N C +C Y+++ ++ M + + R T
Sbjct: 132 LHGNMFVEECAKCKTQYVRD-TVVGTMGLKATGRLCTVAKA 171
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein
complex, phosphoesterase fold, OB fold, zinc-binding
motif, DNA replication; HET: DNA; 2.50A {Saccharomyces
cerevisiae}
Length = 206
Score = 27.0 bits (59), Expect = 6.0
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKGVRYQCEECPKDFSTRKYLTQHQNAIHRGIR 57
C +C K F ++ + QC+ C + F+ + +Q +++I I
Sbjct: 25 CPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHIS 77
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHK 26
Y C C ++F K L++H +HK
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand
domain, alternative splicing, polymorphism, signaling
protein; 1.68A {Homo sapiens} PDB: 2z13_A
Length = 133
Score = 26.3 bits (58), Expect = 7.1
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 104 HILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKF 152
++ H+ L +E + T ++ F G+ + C F
Sbjct: 66 TSIRRHRITLPPPDE----DQFYTVYHFNVGTEVVFYGRTFKIYDCDAF 110
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 25.6 bits (56), Expect = 7.5
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 19/69 (27%)
Query: 82 FGIRHPCSECPKTFASRHSL-KNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFN 140
+ PK +H L + H L++ + +Y C++C +
Sbjct: 17 AKYDEIAKDWPKK--VKHVLHEEHELELTRVQVYTCDKC----------------EEEGT 58
Query: 141 GKRYHCTQC 149
YHC +C
Sbjct: 59 IWSYHCDEC 67
>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} SCOP:
a.24.4.1 PDB: 1a7d_A 1a7e_A
Length = 118
Score = 26.0 bits (57), Expect = 7.6
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 90 ECPKTFASRHSLKNHILKI---HKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
E P+ + S + ++ HK + +C L + HF
Sbjct: 3 EIPEPYVWDESFRVFYEQLDEEHKKIFKGIFDCIRDNSAPNLATLVKVTTNHF--THEEA 60
Query: 147 TQCSKFYIQESDLMEHMAVHSGVRK 171
+ Y S+++ H +H +
Sbjct: 61 MMDAAKY---SEVVPHKKMHKDFLE 82
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 26.9 bits (58), Expect = 7.9
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 85 RHPCSECPKTFASRHSLKNHILKIHKAVL 113
C K F + + H+ H ++
Sbjct: 306 GCGAKGCTKLFHAAEFVYKHLKLKHTELV 334
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein,
lipid binding, helix swapping, struc genomics,
structural genomics consortium, SGC; 2.80A {Homo
sapiens} SCOP: d.129.3.2
Length = 237
Score = 26.6 bits (58), Expect = 8.6
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 204 NRTDLRGSGIAPSWISNGIGATTPPSVMGKTKLFRAPDPR 243
R DL+G +P W S G G V F+
Sbjct: 194 CRIDLKGH--SPEWYSKGFGHLCAAEVARIRNSFQPLIAE 231
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.0 bits (51), Expect = 8.7
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 140 NGKRYHCTQCSKFYIQ-ESDLMEHMAVHSGVR 170
+G+ C C ++++ SDL H+ H GV+
Sbjct: 6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.437
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,054,597
Number of extensions: 231594
Number of successful extensions: 1980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1608
Number of HSP's successfully gapped: 760
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.0 bits)