RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11318
(263 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.4 bits (86), Expect = 9e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 90 ECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH 138
+C K+F + H+ Y C C K + K L HMK+H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVC--GKKFKMKHHLVGHMKIH 53
Score = 37.0 bits (85), Expect = 1e-04
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 118 ECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVH 166
C K + K RHM +H + Y C C K + + L+ HM +H
Sbjct: 5 PCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 34.7 bits (79), Expect = 8e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 8 CSKNFSAKDTLNKHM-DIHKGVRYQCEECPKDFSTRKYLTQHQ 49
C K+F+ K ++HM Y C C K F + +L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 33.9 bits (77), Expect = 0.001
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAH 76
Y C+ C K F+ + +H + + C C + +K+K L+ H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 33.5 bits (76), Expect = 0.002
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 58 FQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECPKTFASRHSLKNHILKIH 109
+ C +C +++ K H + + C C K F +H L H +KIH
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53
Score = 27.0 bits (59), Expect = 0.38
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 1 MRYYCNACSKNFSAKDTLNKHMDIH 25
Y C C K F K L HM IH
Sbjct: 29 RPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.2 bits (79), Expect = 6e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRGIR-FQCN 61
Y C+ C K FS +L H +H R +C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 30.7 bits (70), Expect = 0.013
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+ C C K F+ L HI ++H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 30.7 bits (70), Expect = 0.014
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 3 YYCNACSKNFSAKDTLNKHM-DIHKGVR-YQCE 33
Y C +C K FS D LN H+ +H R ++C+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 30.3 bits (69), Expect = 0.016
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 141 GKRYHCTQCSKFYIQESDLMEHM-AVHSGVR 170
GK Y C C K + + L H+ VH+ R
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSER 33
Score = 26.1 bits (58), Expect = 0.67
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNG-KRYHC 146
Y C C K + L H+K + + C
Sbjct: 6 YICQSC--GKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 34.0 bits (78), Expect = 8e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 133 RHMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
R +RY C +C K + SDL +H H+G
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 29.4 bits (66), Expect = 0.043
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 20 KHMDIHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ + R Y+C+EC K FS L++H+ H G
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTG 37
Score = 25.9 bits (57), Expect = 0.65
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K+FS L+KH H G
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTG 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.0 bits (76), Expect = 0.002
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRG 55
IH G + Y C EC K FS L QHQ +H G
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTG 32
Score = 32.6 bits (75), Expect = 0.003
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 138 HFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
H K Y C +C K + + S L++H VH+G
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 31.8 bits (73), Expect = 0.004
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
Y C C K FS L +H +H G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 26.8 bits (60), Expect = 0.28
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+ C EC K F+ L H ++H
Sbjct: 8 YGCVECGKAFSRSSILVQH-QRVH 30
Score = 25.7 bits (57), Expect = 0.75
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
Y C EC K + L +H ++H
Sbjct: 8 YGCVECG--KAFSRSSILVQHQRVH 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 0.003
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIH 53
H G + Y+C C F+ + H H
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 30.7 bits (70), Expect = 0.011
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+ C C F ++K HIL+ H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 26.9 bits (60), Expect = 0.33
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIH 25
Y C C F+ T+ H+
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
Score = 26.1 bits (58), Expect = 0.50
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ H K Y C C + Q + H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.8 bits (73), Expect = 0.005
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C C +NFS D L H+ H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 31.4 bits (72), Expect = 0.006
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
K + C C + + + L H+ H+G
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 30.7 bits (70), Expect = 0.013
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
+QC C ++FS +LT H H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTG 28
Score = 25.6 bits (57), Expect = 0.58
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
C C + F+ L HI + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTH 26
Score = 24.1 bits (53), Expect = 2.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
+QC C +++ L H++ H
Sbjct: 4 FQCRIC--MRNFSRSDHLTTHIRTH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 31.2 bits (71), Expect = 0.008
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSGVR 170
K++ C +C K +++ L +H+ H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.0 bits (68), Expect = 0.022
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVR 29
+ C C K F D L+KH+ H+ +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.5 bits (64), Expect = 0.071
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ C ECPK F +L++H H+
Sbjct: 3 FACPECPKRFMRSDHLSKHIK-THQN 27
Score = 23.5 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
C ECPK F L HI K H
Sbjct: 3 FACPECPKRFMRSDHLSKHI-KTH 25
Score = 23.5 bits (51), Expect = 4.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
+ C EC K ++ L +H+K H
Sbjct: 3 FACPECP--KRFMRSDHLSKHIKTH 25
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 30.7 bits (70), Expect = 0.011
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C C++ + ++ L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 30.3 bits (69), Expect = 0.015
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKG 27
+ C C++ F+ ++ L +H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 29.1 bits (66), Expect = 0.035
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
+ CE C + F+ +++L +H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTN 27
Score = 26.0 bits (58), Expect = 0.56
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
C C + FA + LK H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSH 25
Score = 23.7 bits (52), Expect = 3.1
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
+ C C ++ + + L+RH + H
Sbjct: 3 FVCEVC--TRAFARQEHLKRHYRSH 25
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.013
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 30 YQCEECPKDFSTRKYLTQHQ 49
Y+C EC K FS L HQ
Sbjct: 3 YKCLECGKAFSQNSGLINHQ 22
Score = 27.6 bits (62), Expect = 0.13
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHS 167
K Y C +C K + Q S L+ H +H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 26.8 bits (60), Expect = 0.22
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIH 25
Y C C K FS L H IH
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
Score = 22.9 bits (50), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC K F+ L NH +IH
Sbjct: 5 CLECGKAFSQNSGLINH-QRIH 25
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.0 bits (68), Expect = 0.018
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 24 IHKGVR-YQCEECPKDFSTRKYLTQHQNAIHRGIRF 58
H G + Y C C K F ++ L H + F
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHF-KRYHDPNF 36
Score = 30.0 bits (68), Expect = 0.021
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGVRY 30
Y C+ C K F K L+ H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 29.6 bits (67), Expect = 0.028
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ H K Y C+ C K + Q+ L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 25.4 bits (56), Expect = 1.1
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+ CS C KTF + L H K +
Sbjct: 9 YACSHCDKTFRQKQLLDMH-FKRY 31
Score = 24.6 bits (54), Expect = 1.8
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFN 140
Y C+ C K + K+ L H K + +
Sbjct: 9 YACSHCD--KTFRQKQLLDMHFKRYHD 33
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 30.1 bits (68), Expect = 0.022
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 134 HMKLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGV 169
+ K + C C + + + L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 28.5 bits (64), Expect = 0.065
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 21 HMDIHKGVR-YQCEECPKDFSTRKYLTQHQ 49
G++ +QC +C + FS +L H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 28.2 bits (63), Expect = 0.092
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHKGV 28
+ C C ++FS D L H H V
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 23.2 bits (50), Expect = 5.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 86 HPCSECPKTFASRHSLKNHILKIHKAV 112
C +C ++F+ L H K H V
Sbjct: 12 FQCPDCDRSFSRSDHLALHR-KRHMLV 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.3 bits (66), Expect = 0.040
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKGVR-YQCE 33
+ C AC K+F+ K L +HM +H R Y CE
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 27.8 bits (62), Expect = 0.13
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHC 146
+ C E + K + K+ L+ HMKLH + + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 25.8 bits (57), Expect = 0.64
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQNAIHRGIR-FQC 60
+ C E C K F+ +K+L +H +H R + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYIC 34
Score = 24.7 bits (54), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 144 YHCTQ--CSKFYIQESDLMEHMAVHSGVR 170
+ C + C K + + L EHM +HS R
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTR 30
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 28.2 bits (63), Expect = 0.094
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIH 25
+ C C F+ K +H+ +H
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
Score = 26.3 bits (58), Expect = 0.45
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 25 HKGVR-YQCEECPKDFSTRKYLTQHQ 49
G R + C C F+T+ +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 25.9 bits (57), Expect = 0.58
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 142 KRYHCTQCSKFYIQESDLMEHMAVHSG 168
+ + C C + +++ H+ VH+
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 24.3 bits (53), Expect = 2.5
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
C C F ++ + H LK+H
Sbjct: 8 FVCRICLSAFTTKANCARH-LKVH 30
Score = 22.8 bits (49), Expect = 9.7
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
+ C C + TK + RH+K+H
Sbjct: 8 FVCRICL--SAFTTKANCARHLKVH 30
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.1 bits (63), Expect = 0.22
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 85 RHPCSECPKTFASRHSLKNHIL-KIHK 110
H C C + F +LK H K HK
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRSKDHK 41
Score = 26.2 bits (58), Expect = 0.95
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 2 RYYCNACSKNFSAKDTLNKHM 22
+ C AC++ F L H
Sbjct: 15 LHRCLACARYFIDSTNLKTHF 35
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 26.1 bits (58), Expect = 0.43
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 3 YYCNA--CSKNFSAKDTLNKHMDIHKGVR 29
+ C C K F+ D L +H H G +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.1 bits (58), Expect = 0.48
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 142 KRYHCT--QCSKFYIQESDLMEHMAVHSGVR 170
+ + CT C K + + +L H H+G +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.6 bits (54), Expect = 1.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 30 YQC--EECPKDFSTRKYLTQHQNAIHRG 55
+ C C K F+ L +H+ H G
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKR-THTG 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 26.1 bits (58), Expect = 0.46
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 142 KRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
K + CT C K Y + +L H+ H+G
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 26.1 bits (58), Expect = 0.52
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKG 27
+ C C K++S + L H+ H G
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 24.6 bits (54), Expect = 1.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQNAIHRG 55
++C C K +S + L H H G
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLR-SHTG 29
Score = 24.6 bits (54), Expect = 1.7
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
++C K Y +L+ H++ H
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSH 27
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.9 bits (57), Expect = 0.57
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 30 YQCEECPKDFSTRKYLTQHQNAIHRG 55
Y C C + F+ R L +H IH G
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.7 bits (56), Expect = 0.59
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 146 CTQCSKFYIQESDLMEHMAVHSG 168
C +C K +++ S L H VH+G
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTG 27
Score = 23.0 bits (49), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 86 HPCSECPKTFASRHSLKNHIL 106
H C+EC K F LK H L
Sbjct: 3 HVCAECGKAFVESSKLKRHQL 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 25.4 bits (56), Expect = 0.84
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 142 KRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
+ Y C C + + + +DL H+ +H+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 25.0 bits (55), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKG 27
Y C +C + FS L +H+ IH G
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 25.0 bits (55), Expect = 1.3
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQNAIHRG 55
Y C C + FS LT+H IH G
Sbjct: 3 YACPVESCDRRFSRSADLTRHIR-IHTG 29
Score = 23.4 bits (51), Expect = 3.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 114 YQCNECSTSKDYLTKRDLRRHMKLH 138
Y C S + + DL RH+++H
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIH 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.0 bits (57), Expect = 0.85
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 126 LTKRDLRRHMKLHFNGKRYHCTQC--SKFYIQESDLMEHMAVHSGVR 170
L + + +++K K + C +K + + ++ H+ H R
Sbjct: 2 LPRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.8 bits (54), Expect = 1.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIH 25
+ C+ C + F+ D +H IH
Sbjct: 4 FACDICGRKFARSDERKRHTKIH 26
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 27.1 bits (59), Expect = 1.9
Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 2/115 (1%)
Query: 76 HTMLEHFGIRHPCSECPKTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHM 135
F H E P+ + N + +A+ C RD
Sbjct: 57 KYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKE--IRDNNLWC 114
Query: 136 KLHFNGKRYHCTQCSKFYIQESDLMEHMAVHSGVRKLTTGPIKTEQTFGVRELRH 190
+ K + + M V G + + +R+
Sbjct: 115 GISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK 169
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.3 bits (52), Expect = 2.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 5 CNACSKNFSAKDTLNKHMDIHKG 27
C C K FS KD L HM H G
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHTG 26
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHK 26
Y C C ++F K L++H +HK
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHK 24
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 24.0 bits (51), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 144 YHCTQCSKFYIQESDLMEHM 163
Y C+ CS+ ++Q+ DL HM
Sbjct: 3 YKCSSCSQQFMQKKDLQSHM 22
Score = 23.6 bits (50), Expect = 3.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 86 HPCSECPKTFASRHSLKNHILKIH 109
+ CS C + F + L++H++K+H
Sbjct: 3 YKCSSCSQQFMQKKDLQSHMIKLH 26
Score = 23.2 bits (49), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1 MRYYCNACSKNFSAKDTLNKHM 22
M Y C++CS+ F K L HM
Sbjct: 1 MPYKCSSCSQQFMQKKDLQSHM 22
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 27.1 bits (60), Expect = 2.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 122 SKDYLTKRDLRRHMKLHFNG 141
S DY T+ ++ HF
Sbjct: 258 STDYQTRTAYWELVRDHFAI 277
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.3 bits (52), Expect = 3.0
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 3 YYCNACSKNFSAKDTLNKHMD 23
+ C+ C K F+ ++T+ +H D
Sbjct: 5 FVCSKCGKTFTRRNTMARHAD 25
Score = 23.5 bits (50), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 88 CSECPKTFASRHSLKNH 104
CS+C KTF R+++ H
Sbjct: 7 CSKCGKTFTRRNTMARH 23
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (52), Expect = 3.0
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKG 27
+ C C K FS L H+ IH G
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTG 29
Score = 23.5 bits (51), Expect = 3.6
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQNAIHRG 55
+QC C K FS L H IH G
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVR-IHTG 29
Score = 23.5 bits (51), Expect = 3.9
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 142 KRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
K + CT C K + + +L H+ +H+G
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
{Acanthamoeba castellanii [TaxId: 5755]}
Length = 125
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/66 (12%), Positives = 14/66 (21%), Gaps = 7/66 (10%)
Query: 96 ASRHSLKNHILKIHKAVLYQCNECSTSKDYLTK-------RDLRRHMKLHFNGKRYHCTQ 148
+ + IL + + + T D R G Y +
Sbjct: 12 GTGAVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLR 71
Query: 149 CSKFYI 154
I
Sbjct: 72 ADDRSI 77
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.4 bits (51), Expect = 4.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 3 YYCN--ACSKNFSAKDTLNKHMDIHKG 27
Y C+ C K F L +H H+
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 23.1 bits (50), Expect = 5.8
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 142 KRYHCTQ--CSKFYIQESDLMEHMAVHSG 168
+ Y C C K +++ DL+ H H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 22.7 bits (49), Expect = 7.4
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 30 YQCEE--CPKDFSTRKYLTQHQ 49
Y C+ C K F L +H+
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHK 25
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.0 bits (52), Expect = 5.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 140 NGKRYHCTQCSKFYIQESDLMEHMAVHS 167
+ Y C C + + D+ H ++HS
Sbjct: 27 DQHVYVCAVCQNVFCVDCDVFVHDSLHS 54
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 24.0 bits (52), Expect = 5.1
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 17/42 (40%)
Query: 111 AVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSKF 152
+Y CNEC R+HCT C +
Sbjct: 4 RFVYTCNECKH-----------------HVETRWHCTVCEDY 28
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 23.6 bits (50), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 3 YYCNACSKNFSAKDTLNKH 21
Y CN C+K F +D+ ++H
Sbjct: 6 YECNICAKRFMWRDSFHRH 24
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 25.8 bits (56), Expect = 6.0
Identities = 39/234 (16%), Positives = 65/234 (27%), Gaps = 36/234 (15%)
Query: 33 EECPKDFSTRKYLTQHQNAIHRGIRFQCNKCFRAYKLKKDLLAHTMLEHFGIRHPCSECP 92
EEC + K H G K K K + HF + H P
Sbjct: 487 EECMFPKADDKSFQDKLYQNHMG------KNRMFTKPGKPTRPNQGPAHFELHHYAGNVP 540
Query: 93 -KTFASRHSLKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLHFNGKRYHCTQCSK 151
K+ I + A+L E ++ + + K T +
Sbjct: 541 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAV 600
Query: 152 FYIQESDLMEHMA---VHSGVRKLTTGPIKTEQTF------------GVRE---LRHVGF 193
+ LM+++ H VR + +K GV E + GF
Sbjct: 601 HRESLNKLMKNLYSTHPHF-VRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGF 659
Query: 194 PMKTDHWSNQNRTDLRGSGIAPSWISNG----------IGATTPPSVMGKTKLF 237
P + + + R + P +G + +G TK+F
Sbjct: 660 PSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVF 713
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 25.6 bits (56), Expect = 6.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 101 LKNHILKIHKAVLYQCNECSTSKDYLTKRDLRRHMKLH 138
+KN+ L + +Q +C Y+ +L H++ H
Sbjct: 131 IKNNALAGQDYIFWQFYKCEECGKYVDIENLEAHLREH 168
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.1 bits (50), Expect = 6.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 3 YYCNACSKNFSAKDTLNKHMDIHK 26
Y C+ C + F + L HM++H+
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVHR 29
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.8 bits (48), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 88 CSECPKTFASRHSLKNHILKIH 109
C EC +TF S S+ H +++H
Sbjct: 6 CLECMRTFKSSFSIWRHQVEVH 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.437
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,054
Number of extensions: 49112
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 173
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)