Query psy1132
Match_columns 106
No_of_seqs 128 out of 762
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 15:23:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 7.4E-45 1.6E-49 284.4 4.0 103 2-104 110-212 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 7E-42 1.5E-46 262.2 7.7 100 2-104 91-190 (250)
3 PTZ00251 fatty acid elongase; 100.0 2.6E-40 5.7E-45 258.2 5.3 98 2-104 112-210 (272)
4 KOG3072|consensus 100.0 5.5E-33 1.2E-37 217.7 2.5 97 3-104 120-216 (282)
5 COG0558 PgsA Phosphatidylglyce 47.7 43 0.00094 24.4 4.5 91 5-101 45-144 (192)
6 PF12643 MazG-like: MazG-like 28.9 81 0.0018 21.2 3.2 26 60-85 34-59 (98)
7 PF04387 PTPLA: Protein tyrosi 20.5 1.3E+02 0.0029 21.8 3.1 81 13-95 5-86 (164)
8 PRK07424 bifunctional sterol d 19.2 69 0.0015 26.5 1.6 36 6-41 11-46 (406)
9 KOG3187|consensus 17.4 5E+02 0.011 20.2 7.0 70 25-95 71-141 (223)
10 PF03605 DcuA_DcuB: Anaerobic 15.5 83 0.0018 26.2 1.2 28 23-57 76-103 (364)
No 1
>KOG3071|consensus
Probab=100.00 E-value=7.4e-45 Score=284.45 Aligned_cols=103 Identities=56% Similarity=0.992 Sum_probs=100.4
Q ss_pred chhhhhHHhhhhhhhhhhHHhhhhcCCCceeeehhhhhccccceeeeeeeecCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy1132 2 VHLCWWYYFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAYYFLSAL 81 (106)
Q Consensus 2 ~~~~~~f~lsK~~El~DTvf~VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~~~~~ 81 (106)
.+++|+||+||+.|++||+|||||||++|+||||+|||++|++.+|.++++.++|++.+++.+|++||++||+||+++|.
T Consensus 110 ~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~ 189 (274)
T KOG3071|consen 110 RFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAF 189 (274)
T ss_pred hHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CCCccchhHHHHHHhHHhhhccC
Q psy1132 82 GPHMNKYLWWKKYLTTLQLVMND 104 (106)
Q Consensus 82 g~~~~~~~~~k~~iT~~QivQf~ 104 (106)
||+.++++||||++|.+|++||.
T Consensus 190 G~~v~~~lWWkky~t~vQlvqf~ 212 (274)
T KOG3071|consen 190 GPRVQWYLWWKKYITIVQLVQFL 212 (274)
T ss_pred CcCccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999984
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=7e-42 Score=262.23 Aligned_cols=100 Identities=50% Similarity=0.929 Sum_probs=92.4
Q ss_pred chhhhhHHhhhhhhhhhhHHhhhhcCCCceeeehhhhhccccceeeeeeeecCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy1132 2 VHLCWWYYFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAYYFLSAL 81 (106)
Q Consensus 2 ~~~~~~f~lsK~~El~DTvf~VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~~~~~ 81 (106)
..+.|+|++||++|++||+|+||||| |+||||||||+++++++|.++++.++|+..+++.+|++||++||+||+++|+
T Consensus 91 ~~~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~ 168 (250)
T PF01151_consen 91 GFWYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSAL 168 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999 6999999999999999999999998889999999999999999999999999
Q ss_pred CCCccchhHHHHHHhHHhhhccC
Q psy1132 82 GPHMNKYLWWKKYLTTLQLVMND 104 (106)
Q Consensus 82 g~~~~~~~~~k~~iT~~QivQf~ 104 (106)
|.+. ...||||+||.+||+||.
T Consensus 169 g~~~-~~~~~k~~IT~~Qi~QF~ 190 (250)
T PF01151_consen 169 GIRK-VPRWWKKYITSLQIVQFV 190 (250)
T ss_pred cccc-chhHHHHHHhHHhhhhhH
Confidence 9651 126899999999999994
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=2.6e-40 Score=258.25 Aligned_cols=98 Identities=29% Similarity=0.394 Sum_probs=85.8
Q ss_pred chhhhhHHhhhhhhhhhhHHhhhhcCCCceeeehhhhhccccceeeeeeeecCCcchHH-HHHHHHHHHHHHHHHHHHHh
Q psy1132 2 VHLCWWYYFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTF-FGLLNTFVHIVMYAYYFLSA 80 (106)
Q Consensus 2 ~~~~~~f~lsK~~El~DTvf~VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~~~~-~~~~Ns~VH~iMY~YY~~~~ 80 (106)
..++|+|++||++|++||+|+||||| |+||||||||++|++.+|.++ .++++..+ ++.+|++||++||+||+++|
T Consensus 112 ~~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~--~~g~~~~~~~~~lNs~VH~iMY~YY~lsa 187 (272)
T PTZ00251 112 GVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSY--QQGSSIWICAAAMNYFVHSIMYFYFALSE 187 (272)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999 699999999999999999976 34444443 58999999999999999999
Q ss_pred cCCCccchhHHHHHHhHHhhhccC
Q psy1132 81 LGPHMNKYLWWKKYLTTLQLVMND 104 (106)
Q Consensus 81 ~g~~~~~~~~~k~~iT~~QivQf~ 104 (106)
+|++.+ ..||||+||.+||+||.
T Consensus 188 ~g~~~~-~~~~kk~IT~lQi~Qfv 210 (272)
T PTZ00251 188 AGFKKL-VKPFAMYITLLQITQMV 210 (272)
T ss_pred cCCchh-hhHHHHHHHHHHHHHHH
Confidence 999732 23599999999999985
No 4
>KOG3072|consensus
Probab=99.97 E-value=5.5e-33 Score=217.75 Aligned_cols=97 Identities=34% Similarity=0.504 Sum_probs=90.6
Q ss_pred hhhhhHHhhhhhhhhhhHHhhhhcCCCceeeehhhhhccccceeeeeeeecCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1132 3 HLCWWYYFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAYYFLSALG 82 (106)
Q Consensus 3 ~~~~~f~lsK~~El~DTvf~VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY~~~~~g 82 (106)
.|+|+|.+||..|++||+|+|||||| ++|||||||++++++.|.+++-.. +.+++++.+|..||.+||+||+++|+|
T Consensus 120 fW~~~fvlSK~~ElgDT~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~-a~~rw~i~mNy~vHa~MY~YY~lrsl~ 196 (282)
T KOG3072|consen 120 FWSWLFVLSKAPELGDTIFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKV-AWGRWFIWMNYLVHAFMYSYYALRSLG 196 (282)
T ss_pred HHHHHHHHHhhhhhhceeEEEeccCc--cEEEechhhheeeeeeeeecccCC-cCceEEEEEehhHHHHHHHHHHHHHcC
Confidence 68999999999999999999999998 999999999999999999987654 467899999999999999999999999
Q ss_pred CCccchhHHHHHHhHHhhhccC
Q psy1132 83 PHMNKYLWWKKYLTTLQLVMND 104 (106)
Q Consensus 83 ~~~~~~~~~k~~iT~~QivQf~ 104 (106)
.|+|| +..+.||.+||+||.
T Consensus 197 ir~Pk--~vam~iTtlQi~Qm~ 216 (282)
T KOG3072|consen 197 IRLPK--SVAMAITTLQIVQMV 216 (282)
T ss_pred CCCCh--HHHHHHHHHHHHHHH
Confidence 99986 579999999999984
No 5
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=47.74 E-value=43 Score=24.43 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=47.6
Q ss_pred hhhHHhhhhhhhhhhHHhhhhcCCCceeee--------hhhhhccccceeeeeeeecCCcchHHHHHHHHHHHHHHHHHH
Q psy1132 5 CWWYYFSKFTEFFDTFFFVLRKKQNQVSTL--------HVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAYY 76 (106)
Q Consensus 5 ~~~f~lsK~~El~DTvf~VLrKK~~qvsfL--------HvyHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~VH~iMY~YY 76 (106)
..+|.++-+.|.+|... .||. +|.|-+ --+.-.+.++...... +........++=+.-=.++|..=
T Consensus 45 ~~l~~~a~l~D~lDG~l--AR~~-~~~S~~G~~LDp~~Dk~~~~~~l~~l~~~~---~~~~~~~~~l~l~r~~~vs~~r~ 118 (192)
T COG0558 45 LVLFLLAALTDALDGYL--ARKW-GQVSRFGAFLDPVADKLLDAALLLGLVALG---PVSPLWLAILILAREILVSYLRA 118 (192)
T ss_pred HHHHHHHHHHHHHhHHH--HHHh-cCCCccchhcchhhHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999994 7766 477732 2333333222211111 11012223222233333444444
Q ss_pred HHHhcC-CCccchhHHHHHHhHHhhh
Q psy1132 77 FLSALG-PHMNKYLWWKKYLTTLQLV 101 (106)
Q Consensus 77 ~~~~~g-~~~~~~~~~k~~iT~~Qiv 101 (106)
..++.| ....+..++.|..|..|++
T Consensus 119 ~~~~~g~~~~~~~~~~gk~~t~~~~~ 144 (192)
T COG0558 119 LAASLGGRDYVGASGRGKRKTILQMV 144 (192)
T ss_pred HHHHhcCCceECcchhhHHHHHHHHH
Confidence 445554 2233345788999999986
No 6
>PF12643 MazG-like: MazG-like family
Probab=28.95 E-value=81 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy1132 60 FFGLLNTFVHIVMYAYYFLSALGPHM 85 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~YY~~~~~g~~~ 85 (106)
--.+.+++..+++|+|-+...+|.++
T Consensus 34 ~e~i~deLAdvii~~ylLa~rLGid~ 59 (98)
T PF12643_consen 34 QEAIKDELADVIIYCYLLADRLGIDF 59 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 35789999999999999999999984
No 7
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=20.45 E-value=1.3e+02 Score=21.83 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=49.0
Q ss_pred hhhhhhhHHhhhhcCCCceeeehhhhhccccceeeeeeeecCCcchH-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Q psy1132 13 FTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHST-FFGLLNTFVHIVMYAYYFLSALGPHMNKYLWW 91 (106)
Q Consensus 13 ~~El~DTvf~VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~~~-~~~~~Ns~VH~iMY~YY~~~~~g~~~~~~~~~ 91 (106)
+.|.+...+-+.|-+ --.+++++.-=..+++......+-..+..+. ...+.=++.-++=|+||..+-+|..+. .+.|
T Consensus 5 ~lEi~h~~~Glv~S~-~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~-~L~W 82 (164)
T PF04387_consen 5 VLEILHAALGLVRSP-VLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPY-WLTW 82 (164)
T ss_pred HHHHHHHHhccccCc-cHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCch-HHHH
Confidence 456666666555544 3567888876665444433332221111222 234567899999999999999887654 4556
Q ss_pred HHHH
Q psy1132 92 KKYL 95 (106)
Q Consensus 92 k~~i 95 (106)
-||-
T Consensus 83 LRYs 86 (164)
T PF04387_consen 83 LRYS 86 (164)
T ss_pred HHHh
Confidence 6653
No 8
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=19.18 E-value=69 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=24.5
Q ss_pred hhHHhhhhhhhhhhHHhhhhcCCCceeeehhhhhcc
Q psy1132 6 WWYYFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGV 41 (106)
Q Consensus 6 ~~f~lsK~~El~DTvf~VLrKK~~qvsfLHvyHH~~ 41 (106)
|...-.-..|.+....=+|-.+.+.++-+|.+||-.
T Consensus 11 ~~~~~~~~~~~~~d~~h~~~h~~~~l~~~h~~hh~~ 46 (406)
T PRK07424 11 LILGSILWVEIVRDSYHALAHQWNPLYRLHNWHHRV 46 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHhh
Confidence 333334456777444446666778999999999964
No 9
>KOG3187|consensus
Probab=17.37 E-value=5e+02 Score=20.22 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=45.6
Q ss_pred hcCCCceeeehhhhhccccceeeeeeeecCCcc-hHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Q psy1132 25 RKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGH-STFFGLLNTFVHIVMYAYYFLSALGPHMNKYLWWKKYL 95 (106)
Q Consensus 25 rKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~-~~~~~~~Ns~VH~iMY~YY~~~~~g~~~~~~~~~k~~i 95 (106)
-|.+.=+++.|+-+=..+++..........+.. ......+=+..-.+=|+||+++.+|. .|+.+-|-+|-
T Consensus 71 v~S~~v~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~~l~wlRYt 141 (223)
T KOG3187|consen 71 VKSSPVVTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPKLLTWLRYT 141 (223)
T ss_pred ccCCceeeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhhHhhhh
Confidence 444445678888877665554444433332222 23445688999999999999999998 55556666653
No 10
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=15.48 E-value=83 Score=26.21 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=19.0
Q ss_pred hhhcCCCceeeehhhhhccccceeeeeeeecCCcc
Q psy1132 23 VLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGH 57 (106)
Q Consensus 23 VLrKK~~qvsfLHvyHH~~~~~~~w~~~~~~~~~~ 57 (106)
+|||++++++|| .++.+|.-.-....|+
T Consensus 76 ~LRk~Pk~It~l-------AP~vt~~~T~~~GTgh 103 (364)
T PF03605_consen 76 ILRKNPKYITFL-------APLVTYLFTFLAGTGH 103 (364)
T ss_pred HHHhCCCcEEEe-------hhHHHHHHHHHhcccH
Confidence 499999999997 4556666543334444
Done!