Query psy1132
Match_columns 106
No_of_seqs 128 out of 762
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 15:23:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wb6_A AFV1-102; archaeal viru 19.8 41 0.0014 22.4 1.3 16 13-28 40-55 (130)
2 2koe_A Human cannabinoid recep 18.4 11 0.00036 19.4 -1.5 17 59-75 7-23 (40)
3 4dkl_A MU-type opioid receptor 17.6 94 0.0032 22.8 3.0 16 61-76 427-442 (464)
4 3vw7_A Proteinase-activated re 16.8 72 0.0025 23.7 2.2 15 61-75 436-450 (484)
5 3eml_A Human adenosine A2A rec 15.8 1.1E+02 0.0038 22.6 3.0 17 60-76 437-453 (488)
6 2ks9_A Substance-P receptor; w 14.6 1.3E+02 0.0044 21.4 3.0 16 61-76 293-308 (364)
7 4eiy_A Adenosine receptor A2A/ 14.5 1.3E+02 0.0043 22.0 3.0 17 60-76 396-412 (447)
8 3rze_A Histamine H1 receptor, 14.0 1.3E+02 0.0045 21.9 3.0 16 60-75 413-428 (452)
9 3pbl_A D(3) dopamine receptor, 13.4 1.4E+02 0.0048 22.1 3.0 17 60-76 442-458 (481)
10 3uon_A Human M2 muscarinic ace 12.2 99 0.0034 22.8 1.9 17 60-76 428-444 (467)
No 1
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=19.78 E-value=41 Score=22.39 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=13.2
Q ss_pred hhhhhhhHHhhhhcCC
Q psy1132 13 FTEFFDTFFFVLRKKQ 28 (106)
Q Consensus 13 ~~El~DTvf~VLrKK~ 28 (106)
.-|++|..|+|..|-.
T Consensus 40 msefldsmflvieklg 55 (130)
T 2wb6_A 40 MSEFLDSMFLVIEKLG 55 (130)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4599999999998743
No 2
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=18.44 E-value=11 Score=19.37 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1132 59 TFFGLLNTFVHIVMYAY 75 (106)
Q Consensus 59 ~~~~~~Ns~VH~iMY~Y 75 (106)
.+...+|+.+.|+.|+.
T Consensus 7 ~~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677899999999964
No 3
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=17.59 E-value=94 Score=22.80 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1132 61 FGLLNTFVHIVMYAYY 76 (106)
Q Consensus 61 ~~~~Ns~VH~iMY~YY 76 (106)
.+.+|+.++|+.|.+.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 5678999999999864
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=16.80 E-value=72 Score=23.73 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1132 61 FGLLNTFVHIVMYAY 75 (106)
Q Consensus 61 ~~~~Ns~VH~iMY~Y 75 (106)
.+.+|+.++|+.|++
T Consensus 436 L~~~ns~iNPiIY~~ 450 (484)
T 3vw7_A 436 VSSISCCIDPLIYYY 450 (484)
T ss_dssp HHTTHHHHHHHHHHH
T ss_pred HHHhccccchHHHHH
Confidence 456899999999975
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=15.77 E-value=1.1e+02 Score=22.60 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1132 60 FFGLLNTFVHIVMYAYY 76 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~YY 76 (106)
+.+.+|+.++|++|.+.
T Consensus 437 ~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhhc
Confidence 35679999999999764
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=14.60 E-value=1.3e+02 Score=21.39 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1132 61 FGLLNTFVHIVMYAYY 76 (106)
Q Consensus 61 ~~~~Ns~VH~iMY~YY 76 (106)
...+|+.++|+.|.+.
T Consensus 293 l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568999999999763
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=14.52 E-value=1.3e+02 Score=22.03 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1132 60 FFGLLNTFVHIVMYAYY 76 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~YY 76 (106)
+...+|+.++|+.|.+.
T Consensus 396 ~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 396 VLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhHhc
Confidence 35678999999999753
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=13.96 E-value=1.3e+02 Score=21.94 Aligned_cols=16 Identities=19% Similarity=0.644 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1132 60 FFGLLNTFVHIVMYAY 75 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~Y 75 (106)
+...+|+.++|+.|.+
T Consensus 413 ~L~~~ns~~NPiIY~~ 428 (452)
T 3rze_A 413 WLGYINSTLNPLIYPL 428 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhh
Confidence 4668999999999976
No 9
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=13.40 E-value=1.4e+02 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1132 60 FFGLLNTFVHIVMYAYY 76 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~YY 76 (106)
+...+|+.++|+.|.+.
T Consensus 442 ~L~~~ns~~NPiIY~~~ 458 (481)
T 3pbl_A 442 WLGYVNSALNPVIYTTF 458 (481)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHc
Confidence 35678999999999763
No 10
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=12.21 E-value=99 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1132 60 FFGLLNTFVHIVMYAYY 76 (106)
Q Consensus 60 ~~~~~Ns~VH~iMY~YY 76 (106)
+...+|+.++|+.|.+.
T Consensus 428 ~L~~~ns~~NPiIY~~~ 444 (467)
T 3uon_A 428 WLCYINSTINPACYALC 444 (467)
T ss_dssp HHHHHTTTHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHc
Confidence 35689999999999764
Done!