Query psy1132
Match_columns 106
No_of_seqs 128 out of 762
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 15:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 27.3 10 0.00076 19.5 0.9 13 16-28 17-29 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 22.0 8.3 0.0006 20.7 -0.1 13 16-28 16-28 (45)
3 d2axtf1 f.23.38.1 (F:11-45) Cy 11.0 37 0.0027 16.9 0.7 13 90-102 22-34 (35)
4 d1xlya_ a.232.1.1 (A:) RNA-bin 10.2 56 0.0041 22.6 1.6 22 5-26 18-39 (232)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 9.1 58 0.0042 21.3 1.3 15 61-75 294-308 (348)
6 d2v5pc1 g.1.1.1 (C:6-63) Insul 8.0 67 0.0049 17.7 1.1 14 15-28 7-20 (58)
7 d1wqji1 g.1.1.1 (I:2-63) Insul 7.9 67 0.0049 17.8 1.1 14 15-28 8-21 (62)
8 d1tuba2 d.79.2.1 (A:246-440) T 7.9 77 0.0056 20.4 1.6 23 9-38 142-164 (195)
9 d1khva_ e.8.1.4 (A:) Viral RNA 7.8 1.4E+02 0.01 22.0 3.3 23 54-77 303-325 (497)
10 d1ra6a_ e.8.1.4 (A:) Viral RNA 7.4 1.6E+02 0.012 21.3 3.5 26 54-80 287-312 (461)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.34 E-value=10 Score=19.47 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.0
Q ss_pred hhhhHHhhhhcCC
Q psy1132 16 FFDTFFFVLRKKQ 28 (106)
Q Consensus 16 l~DTvf~VLrKK~ 28 (106)
.+--+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 4556789999985
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.04 E-value=8.3 Score=20.67 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.3
Q ss_pred hhhhHHhhhhcCC
Q psy1132 16 FFDTFFFVLRKKQ 28 (106)
Q Consensus 16 l~DTvf~VLrKK~ 28 (106)
.+--+|+||+||+
T Consensus 16 ~laQi~LVLKKKQ 28 (45)
T d1q90a3 16 LLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567889999985
No 3
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.02 E-value=37 Score=16.88 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=9.1
Q ss_pred HHHHHHhHHhhhc
Q psy1132 90 WWKKYLTTLQLVM 102 (106)
Q Consensus 90 ~~k~~iT~~QivQ 102 (106)
..--.||.+|.+|
T Consensus 22 fFlGai~aMqfiq 34 (35)
T d2axtf1 22 FFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hhHhHHHHHHHhh
Confidence 3456678888776
No 4
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.17 E-value=56 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.4
Q ss_pred hhhHHhhhhhhhhhhHHhhhhc
Q psy1132 5 CWWYYFSKFTEFFDTFFFVLRK 26 (106)
Q Consensus 5 ~~~f~lsK~~El~DTvf~VLrK 26 (106)
.+--|+|.+++++.-.+.++||
T Consensus 18 ~~s~YiS~yv~~LNk~I~~lRr 39 (232)
T d1xlya_ 18 LLSRYLSSYIHVLNKFISHLRR 39 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556999999999999999987
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.06 E-value=58 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy1132 61 FGLLNTFVHIVMYAY 75 (106)
Q Consensus 61 ~~~~Ns~VH~iMY~Y 75 (106)
...+|+.++|+.|.+
T Consensus 294 l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 294 FAKTSAVYNPVIYIM 308 (348)
T ss_dssp HGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 446999999999976
No 6
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.99 E-value=67 Score=17.65 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=11.1
Q ss_pred hhhhhHHhhhhcCC
Q psy1132 15 EFFDTFFFVLRKKQ 28 (106)
Q Consensus 15 El~DTvf~VLrKK~ 28 (106)
||+||.-||-.-|.
T Consensus 7 ~LVdaL~~VCg~rG 20 (58)
T d2v5pc1 7 ELVDTLQFVCGDRG 20 (58)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHcCCC
Confidence 78999999886553
No 7
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.94 E-value=67 Score=17.82 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.0
Q ss_pred hhhhhHHhhhhcCC
Q psy1132 15 EFFDTFFFVLRKKQ 28 (106)
Q Consensus 15 El~DTvf~VLrKK~ 28 (106)
||+||.-||-.-|.
T Consensus 8 ~LvdaL~~VCG~rG 21 (62)
T d1wqji1 8 ELVDALQFVCGDRG 21 (62)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHccCC
Confidence 78999999975543
No 8
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.86 E-value=77 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=15.0
Q ss_pred HhhhhhhhhhhHHhhhhcCCCceeeehhhh
Q psy1132 9 YFSKFTEFFDTFFFVLRKKQNQVSTLHVIH 38 (106)
Q Consensus 9 ~lsK~~El~DTvf~VLrKK~~qvsfLHvyH 38 (106)
.+.|+.+=.|..+ +|| .|||+|=
T Consensus 142 ~f~~i~~~Fdkl~---~rk----Aflh~Y~ 164 (195)
T d1tuba2 142 AWARLDHKFDLMY---AKR----AFVHWYV 164 (195)
T ss_dssp HHHHHHHHHHHHT---TTT----CCTTTGG
T ss_pred HHHHHHHHHHHHH---hhc----hHHHHhc
Confidence 3566666667654 443 7999993
No 9
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=7.80 E-value=1.4e+02 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=16.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Q psy1132 54 PGGHSTFFGLLNTFVHIVMYAYYF 77 (106)
Q Consensus 54 ~~~~~~~~~~~Ns~VH~iMY~YY~ 77 (106)
|+|+ ..-+++||++|.+|..|=.
T Consensus 303 PSG~-p~Tsi~NSi~N~i~i~~a~ 325 (497)
T d1khva_ 303 PSGM-PFTSVINSICHWLLWSAAV 325 (497)
T ss_dssp CTTS-TTHHHHHHHHHHHHHHHHH
T ss_pred CCCC-ceeehhhhHHHHHHHHHHH
Confidence 5665 4678999999998766633
No 10
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=7.43 E-value=1.6e+02 Score=21.33 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=18.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHh
Q psy1132 54 PGGHSTFFGLLNTFVHIVMYAYYFLSA 80 (106)
Q Consensus 54 ~~~~~~~~~~~Ns~VH~iMY~YY~~~~ 80 (106)
|+|+ ..-+.+||++|.++..|=....
T Consensus 287 PSG~-~~T~iiNSi~N~i~i~~a~~~~ 312 (461)
T d1ra6a_ 287 PSGC-SGTSIFNSMINNLIIRTLLLKT 312 (461)
T ss_dssp CTBS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CeeEeehhHHHHHHHHHHHHHh
Confidence 6665 4678999999998755544443
Done!