RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1132
(106 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 127 bits (322), Expect = 3e-38
Identities = 55/103 (53%), Positives = 70/103 (67%), Gaps = 3/103 (2%)
Query: 1 MVHLCWWY--YFSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHS 58
M + +WY + SKF E DT F VLRKKQ Q+S LHV HH M + W G+K+ PGGH
Sbjct: 84 MGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHF 143
Query: 59 TFFGLLNTFVHIVMYAYYFLSALGPHMNKYLWWKKYLTTLQLV 101
F LLN+FVH++MY YYFL+ALG +WWKKY+T LQ++
Sbjct: 144 WFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQII 185
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 40.6 bits (95), Expect = 4e-05
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 11 SKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGL--LNTFV 68
SK EF DTFF ++ K+ + L HH + + W + G S + +N FV
Sbjct: 121 SKVPEFGDTFFLIMGGKK--LPFLSWFHHVTIFLYAWMSYQ---QGSSIWICAAAMNYFV 175
Query: 69 HIVMYAYYFLSALG 82
H +MY Y+ LS G
Sbjct: 176 HSIMYFYFALSEAG 189
>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family. NmrA is a negative
transcriptional regulator involved in the
post-translational modification of the transcription
factor AreA. NmrA is part of a system controlling
nitrogen metabolite repression in fungi. This family
only contains a few sequences as iteration results in
significant matches to other Rossmann fold families.
Length = 232
Score = 27.6 bits (62), Expect = 0.98
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 37 IHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAYYFLSALGPHMN 86
+GV P F K + G+ TFV+ + FLS L P +
Sbjct: 109 RSNGVEPAVPHFDSKAEVERYIRALGIPYTFVYAGFFMGNFLSNLAPPGD 158
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 26.9 bits (59), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 65 NTFVHIVMYAYYFLSALGPHMNKYLWWKKY 94
++FV V+ +Y G K+++WK+Y
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQY 73
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 27.1 bits (60), Expect = 2.1
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 29 NQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVH--IVMYAYYFLSALGPHMN 86
N V V +G P F+ L +V + + +N
Sbjct: 566 NPVELKEKDIDPVPN----YGSGLAP-----FYTALALWVGALLTSLLTTDVDLSDGILN 616
Query: 87 KYLWWK-KYLTTLQLVM 102
+++ K L + L +
Sbjct: 617 GRVYFFGKNLVFITLGL 633
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 26.8 bits (59), Expect = 2.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 57 HSTFFGLLNTFVHIVMYA-----YYFLSALGPHMNKYLWWKKY 94
F L ++ MY + ++G +K L K Y
Sbjct: 310 KDVFQTTLINHFNLDMYYAQTTFVTLMQSMGESKSKMLLNKLY 352
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1170
Score = 26.6 bits (59), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 41 VMPMSVWF-GVKFTPGGHSTFFGL 63
VMP + G+ FTP G+ FGL
Sbjct: 814 VMPPDINRSGIDFTPKGNRILFGL 837
>gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofH subunit. This enzyme, together with
CofG, complete the biosynthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the
chromophore of coenzyme F420. The chromophore is also
used in cyanobacteria DNA photolyases [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 343
Score = 26.1 bits (58), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 17 FDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVK 51
D + +LR + +V +H+ H PM V++G +
Sbjct: 102 GDFYLDILRAVKEEVPGMHI--HAFSPMEVYYGAR 134
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 25.8 bits (57), Expect = 5.4
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 16 FFDTFFFVLRKKQNQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYAY 75
F+L +TL + + + F V LL T V
Sbjct: 792 ILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTV-------LVLIQLLLTLA--VRSRG 842
Query: 76 YFLSALGPHMNKYLWW 91
+ NKYLW
Sbjct: 843 RPFLSSLLFSNKYLWL 858
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.143 0.511
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,469,651
Number of extensions: 458264
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 44
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.1 bits)