RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1132
         (106 letters)



>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
           genomics, NPPSFA, N project on protein structural and
           functional analyses; HET: PLP; 1.90A {Sulfolobus
           tokodaii}
          Length = 419

 Score = 25.6 bits (57), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 40  GVMPMSVWFG---VKFTPGGH-STFFG 62
           G+MP+        + F PG H +TF G
Sbjct: 286 GIMPIGATIFRKDLDFKPGMHSNTFGG 312


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 4.9
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 10  FSKFTEFFDTFFFVLRKKQNQVSTLHVIHHGVMPM--SVWFGVKFTPGGHSTFFGLLNTF 67
            + F   F  F F L +K    ST       ++     + F   +       +  L+N  
Sbjct: 490 MTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 68  VHIVMYAYYFLSALGPHMNKYLWWKKYLTTLQL-VMNDN 105
           +        FL  +  ++       KY   L++ +M ++
Sbjct: 549 LD-------FLPKIEENLICS----KYTDLLRIALMAED 576


>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
           cyclic peptide, membrane protein; 3.80A {Mus musculus}
           PDB: 3g61_A* 3g60_A*
          Length = 1284

 Score = 25.0 bits (55), Expect = 6.6
 Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 47  WFGVKFTPGGHSTFFGLLNTFVHIVMYAYYFLSALGPHM 85
           W+G         +  G + T    V+   + +    P++
Sbjct: 311 WYGTSLVISKEYS-IGQVLTVFFSVLIGAFSVGQASPNI 348


>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics,
           PSI-biology, protein structure initiative, joint center
           for structural genomics; NMR {Pseudomonas aeruginosa}
          Length = 124

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 72  MYAYYFLSALGPHMNKYLWWKKYLTTLQ 99
           ++ + +L  L     K   W  YL  L 
Sbjct: 82  LFTWDYLYELA--TRKDQLWADYLAELA 107


>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971,
           structural genomics, PSI-biology, protein initiative;
           NMR {Shewanella loihica}
          Length = 132

 Score = 24.2 bits (52), Expect = 9.0
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 72  MYAYYFLSALGPHMNKYLWWKKYLTTLQ 99
           +Y++  L  L    N+   W+ YL  L+
Sbjct: 89  LYSWKVLYDLA--SNQVDLWENYLARLR 114


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.143    0.511 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,714,753
Number of extensions: 86814
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 20
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.8 bits)