Query psy11322
Match_columns 74
No_of_seqs 114 out of 1014
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:26:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 7.7E-32 1.7E-36 194.8 6.5 73 1-73 477-549 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 1E-31 2.2E-36 191.4 6.7 73 1-73 380-452 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 1.2E-31 2.6E-36 191.1 6.8 73 1-73 376-448 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 2.2E-31 4.8E-36 189.6 7.2 73 1-73 377-449 (671)
5 cd01384 MYSc_type_XI Myosin mo 100.0 2.3E-31 5E-36 189.6 6.6 73 1-73 382-454 (674)
6 cd01382 MYSc_type_VI Myosin mo 100.0 2.2E-31 4.8E-36 190.7 6.3 73 1-73 412-484 (717)
7 cd01385 MYSc_type_IX Myosin mo 100.0 2.9E-31 6.3E-36 189.5 6.5 72 2-73 393-464 (692)
8 cd01379 MYSc_type_III Myosin m 100.0 3.2E-31 7E-36 188.4 6.3 73 1-73 388-460 (653)
9 COG5022 Myosin heavy chain [Cy 100.0 2.1E-31 4.5E-36 197.1 5.5 73 1-73 443-516 (1463)
10 cd01378 MYSc_type_I Myosin mot 100.0 6E-31 1.3E-35 187.5 6.6 72 1-72 381-453 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 1.9E-30 4.1E-35 185.4 6.9 73 1-73 389-462 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 3.3E-30 7.1E-35 184.1 6.4 72 1-73 383-454 (691)
13 smart00242 MYSc Myosin. Large 100.0 4.6E-30 9.9E-35 183.1 6.6 73 1-73 384-456 (677)
14 cd00124 MYSc Myosin motor doma 100.0 2E-29 4.3E-34 179.9 5.9 73 1-73 377-449 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 7.6E-29 1.6E-33 178.5 6.2 72 2-73 395-481 (767)
16 PF00063 Myosin_head: Myosin h 99.9 2.5E-28 5.4E-33 174.1 6.3 73 1-73 379-452 (689)
17 KOG0164|consensus 99.9 7.6E-28 1.7E-32 170.7 4.1 73 1-73 390-462 (1001)
18 KOG0161|consensus 99.9 1E-27 2.3E-32 182.1 3.8 71 2-73 464-535 (1930)
19 KOG0163|consensus 99.9 8.6E-27 1.9E-31 166.4 5.8 73 1-73 466-538 (1259)
20 KOG0160|consensus 99.9 2.7E-24 5.8E-29 155.5 5.1 72 1-73 383-454 (862)
21 KOG0162|consensus 99.9 4.6E-23 1E-27 147.0 3.4 70 1-70 398-468 (1106)
22 KOG4229|consensus 99.9 3.4E-22 7.4E-27 147.1 4.5 73 1-73 442-514 (1062)
23 COG2153 ElaA Predicted acyltra 42.1 11 0.00025 23.2 0.6 28 11-38 117-144 (155)
24 PRK00085 recO DNA repair prote 29.4 19 0.00042 22.9 0.2 40 31-71 3-42 (247)
25 PF15216 TSLP: Thymic stromal 27.9 1.4E+02 0.003 17.8 4.5 55 14-68 9-69 (124)
26 PF10875 DUF2670: Protein of u 27.9 40 0.00086 20.2 1.3 15 48-62 3-17 (139)
27 PF12900 Pyridox_ox_2: Pyridox 26.5 39 0.00084 19.7 1.1 24 46-69 1-24 (143)
28 smart00394 RIIa RIIalpha, Regu 24.7 68 0.0015 14.5 1.5 14 4-18 22-35 (38)
29 PF09084 NMT1: NMT1/THI5 like; 24.2 76 0.0017 19.2 2.2 34 23-56 7-40 (216)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=7.7e-32 Score=194.78 Aligned_cols=73 Identities=36% Similarity=0.513 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++||.|||++|||||++|+
T Consensus 477 ~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~ 549 (821)
T PTZ00014 477 NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPG 549 (821)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=1e-31 Score=191.42 Aligned_cols=73 Identities=53% Similarity=0.970 Sum_probs=71.7
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 380 ~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~ 452 (677)
T cd01383 380 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPN 452 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=1.2e-31 Score=191.14 Aligned_cols=73 Identities=53% Similarity=0.881 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 376 ~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~ 448 (677)
T cd01387 376 FNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQ 448 (677)
T ss_pred CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.97 E-value=2.2e-31 Score=189.63 Aligned_cols=73 Identities=52% Similarity=0.906 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 377 ~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~ 449 (671)
T cd01381 377 VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPK 449 (671)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=2.3e-31 Score=189.57 Aligned_cols=73 Identities=53% Similarity=0.860 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
+|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 382 ~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~ 454 (674)
T cd01384 382 TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK 454 (674)
T ss_pred cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.97 E-value=2.2e-31 Score=190.65 Aligned_cols=73 Identities=41% Similarity=0.797 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 412 ~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~ 484 (717)
T cd01382 412 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQ 484 (717)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999997
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.97 E-value=2.9e-31 Score=189.49 Aligned_cols=72 Identities=60% Similarity=1.096 Sum_probs=71.2
Q ss_pred CchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 2 EIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 2 n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
|||||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||++||.|||++|||||++|+
T Consensus 393 NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~ 464 (692)
T cd01385 393 NSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPH 464 (692)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=3.2e-31 Score=188.35 Aligned_cols=73 Identities=49% Similarity=0.866 Sum_probs=71.5
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||||++|+
T Consensus 388 ~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~ 460 (653)
T cd01379 388 KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQ 460 (653)
T ss_pred CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999997
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.97 E-value=2.1e-31 Score=197.12 Aligned_cols=73 Identities=52% Similarity=0.967 Sum_probs=70.3
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLDee~~~pk 73 (74)
.||||||||||+||+||+.|++|+|+.||++|.+|||.|.+|+|.||++|+|||++ .|.|||++|||||.+|.
T Consensus 443 kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 443 KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 49999999999999999999999999999999999999999999999999999997 37799999999999985
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=6e-31 Score=187.49 Aligned_cols=72 Identities=44% Similarity=0.827 Sum_probs=70.7
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhccC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKCG 72 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLDee~~~p 72 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||++|
T Consensus 381 ~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p 453 (674)
T cd01378 381 KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATP 453 (674)
T ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999 8999999999999999
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=1.9e-30 Score=185.37 Aligned_cols=73 Identities=49% Similarity=0.913 Sum_probs=70.9
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|+|||+++|.|||++|||||++|+
T Consensus 389 ~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~ 462 (693)
T cd01377 389 FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPK 462 (693)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCC
Confidence 49999999999999999999999999999999999999999999 59999999999999999999999999996
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.96 E-value=3.3e-30 Score=184.10 Aligned_cols=72 Identities=56% Similarity=0.960 Sum_probs=69.8
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|||||++|+
T Consensus 383 ~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~ 454 (691)
T cd01380 383 KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPK 454 (691)
T ss_pred CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCC
Confidence 48999999999999999999999999999999999999999999999999999996 6899999999999986
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=4.6e-30 Score=183.08 Aligned_cols=73 Identities=58% Similarity=1.059 Sum_probs=71.4
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 384 ~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~ 456 (677)
T smart00242 384 VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456 (677)
T ss_pred cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999986
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=2e-29 Score=179.85 Aligned_cols=73 Identities=58% Similarity=1.002 Sum_probs=71.4
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 377 ~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~ 449 (679)
T cd00124 377 KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPK 449 (679)
T ss_pred CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.95 E-value=7.6e-29 Score=178.52 Aligned_cols=72 Identities=33% Similarity=0.534 Sum_probs=67.8
Q ss_pred CchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------Ccccccch
Q psy11322 2 EIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLD 66 (74)
Q Consensus 2 n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p--------------~Gll~lLD 66 (74)
|||||||||||||+||++|++++|..++++|.+|||+|..+.+ .||++|+++|+++| .|||++||
T Consensus 395 NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLD 474 (767)
T cd01386 395 ATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLD 474 (767)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhh
Confidence 8999999999999999999999999999999999999987666 79999999999865 59999999
Q ss_pred hhhccCC
Q psy11322 67 DQAKCGK 73 (74)
Q Consensus 67 ee~~~pk 73 (74)
|||++|+
T Consensus 475 Eec~~p~ 481 (767)
T cd01386 475 EEALVPG 481 (767)
T ss_pred HhhcCCC
Confidence 9999997
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.95 E-value=2.5e-28 Score=174.10 Aligned_cols=73 Identities=56% Similarity=1.047 Sum_probs=69.4
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|+|||+++|.|||++|||||++|+
T Consensus 379 ~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~ 452 (689)
T PF00063_consen 379 VNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPR 452 (689)
T ss_dssp SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTT
T ss_pred ccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhccc
Confidence 48999999999999999999999999999999999999999999 99999999999999999999999999986
No 17
>KOG0164|consensus
Probab=99.94 E-value=7.6e-28 Score=170.71 Aligned_cols=73 Identities=44% Similarity=0.766 Sum_probs=70.7
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||+.|++.+++.||+||.+|||.|.+++|.+|..++||++.+.+||++||||||+-|-
T Consensus 390 ~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G 462 (1001)
T KOG0164|consen 390 DNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPG 462 (1001)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999763
No 18
>KOG0161|consensus
Probab=99.94 E-value=1e-27 Score=182.06 Aligned_cols=71 Identities=51% Similarity=0.931 Sum_probs=69.4
Q ss_pred CchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 2 EIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 2 n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
|||||+||||+||+||++|++++|..++++|++|||.|.+++| .|-++|++||++ |+||+|+|||||+|||
T Consensus 464 nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 464 NSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPK 535 (1930)
T ss_pred CCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999 899999999995 8899999999999997
No 19
>KOG0163|consensus
Probab=99.93 E-value=8.6e-27 Score=166.41 Aligned_cols=73 Identities=49% Similarity=0.874 Sum_probs=71.8
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
+|||||||||||||+||++|++++++.+|+.|..||+.++.+.|.||++|++||+.|..|||.|||||+++|+
T Consensus 466 ~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~ 538 (1259)
T KOG0163|consen 466 VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPK 538 (1259)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999997
No 20
>KOG0160|consensus
Probab=99.90 E-value=2.7e-24 Score=155.46 Aligned_cols=72 Identities=58% Similarity=0.976 Sum_probs=70.2
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
+|+||||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+++|+. |.|++++|||||++|+
T Consensus 383 ~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~ 454 (862)
T KOG0160|consen 383 VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPK 454 (862)
T ss_pred cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCC
Confidence 58999999999999999999999999999999999999999999999999999997 9999999999999996
No 21
>KOG0162|consensus
Probab=99.87 E-value=4.6e-23 Score=147.02 Aligned_cols=70 Identities=41% Similarity=0.776 Sum_probs=67.2
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhc
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 70 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLDee~~ 70 (74)
+|||||+||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. +|.|||++|||.|-
T Consensus 398 ~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A 468 (1106)
T KOG0162|consen 398 NNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA 468 (1106)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999997 58899999999885
No 22
>KOG4229|consensus
Probab=99.85 E-value=3.4e-22 Score=147.07 Aligned_cols=73 Identities=56% Similarity=1.001 Sum_probs=71.5
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
+|+|||+|||+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.||+
T Consensus 442 ~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~ 514 (1062)
T KOG4229|consen 442 RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPK 514 (1062)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999997
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=42.08 E-value=11 Score=23.16 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhcCCc
Q psy11322 11 YANEHLQYYFNQHVFQYEQEEYNKEGIR 38 (74)
Q Consensus 11 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 38 (74)
-|.+.||.+|-..-|....++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 3678899999999999999999999996
No 24
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=29.41 E-value=19 Score=22.86 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=30.8
Q ss_pred HhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhcc
Q psy11322 31 EYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKC 71 (74)
Q Consensus 31 ~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~ 71 (74)
.+..+||.-...+|.++..++.++.. ..|+++.+-.-++-
T Consensus 3 ~~~~~giVL~~~~~~E~d~iv~l~T~-~~G~i~~~a~g~rk 42 (247)
T PRK00085 3 LYRDEGIVLHTRPYGETSLIVTLFTR-EHGRVRAVAKGARR 42 (247)
T ss_pred cccccEEEEecCCCcccchhhhcccc-ccCcEEEEEecCCC
Confidence 35678888888888999999999984 56888877654443
No 25
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=27.94 E-value=1.4e+02 Score=17.75 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhh-cCCccccccc-CChHHHHHHHhc----CCCcccccchhh
Q psy11322 14 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 68 (74)
Q Consensus 14 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~~~~-~dn~~~~~li~~----~p~Gll~lLDee 68 (74)
|+++.-|...+|..-.+.... -......+-+ .+...|+..|+. +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 677888877777644333322 2344555545 677889988876 445777776664
No 26
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=27.93 E-value=40 Score=20.16 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCCccc
Q psy11322 48 TLCLQLVEGKPNGLL 62 (74)
Q Consensus 48 ~~~~~li~~~p~Gll 62 (74)
+..-+||...|||++
T Consensus 3 qalrrlIaaNPMg~f 17 (139)
T PF10875_consen 3 QALRRLIAANPMGFF 17 (139)
T ss_pred HHHHHHHhhCCchhh
Confidence 345678999999986
No 27
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=26.45 E-value=39 Score=19.65 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.3
Q ss_pred ChHHHHHHHhcCCCcccccchhhh
Q psy11322 46 DNTLCLQLVEGKPNGLLCVLDDQA 69 (74)
Q Consensus 46 dn~~~~~li~~~p~Gll~lLDee~ 69 (74)
|...+.++|...+.|.|++.|++.
T Consensus 1 d~~e~~~iL~~~~~g~la~~~~~~ 24 (143)
T PF12900_consen 1 DREEIWEILDRAPVGRLAFVDDGY 24 (143)
T ss_dssp -HHHHHHHHHH-SEEEEEEEETTE
T ss_pred CHHHHHHHHhhCCEEEEEEEeCCE
Confidence 346788999999999999998654
No 28
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=24.67 E-value=68 Score=14.51 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=9.0
Q ss_pred hhhhHHHhhhHHHHH
Q psy11322 4 FEQLCINYANEHLQY 18 (74)
Q Consensus 4 ~eql~iN~~nE~l~~ 18 (74)
.-|+|.+|. ++|..
T Consensus 22 ~~~f~~~yF-~kL~~ 35 (38)
T smart00394 22 LVQFAADYF-EKLEE 35 (38)
T ss_pred HHHHHHHHH-HHHHH
Confidence 347788877 56653
No 29
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=24.19 E-value=76 Score=19.21 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHhHHHHHHhhhcCCcccccccCChHHHHHHHhc
Q psy11322 23 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 56 (74)
Q Consensus 23 ~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~ 56 (74)
...-.++..|+++|++...+.+.+...+++.+..
T Consensus 7 ~~vA~~~G~f~~~gl~ve~~~~~~~~~~~~~l~~ 40 (216)
T PF09084_consen 7 LYVAQEKGYFKEEGLDVEIVFFGGGGDVLEALAS 40 (216)
T ss_dssp HHHHHHTTHHHHTTEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHcCCCccCeEEEEEEEecChhHHHHHHhc
Confidence 3455567788999999888888777788887776
Done!