Query psy11322
Match_columns 74
No_of_seqs 114 out of 1014
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 15:26:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 3.5E-33 1.2E-37 200.3 6.4 73 1-73 461-533 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 4E-33 1.4E-37 198.1 5.9 73 1-73 395-467 (697)
3 4anj_A Unconventional myosin-V 100.0 2E-32 6.7E-37 200.5 6.4 73 1-73 465-537 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.8E-32 1.3E-36 195.1 6.9 72 1-73 446-517 (795)
5 1w9i_A Myosin II heavy chain; 100.0 6.5E-32 2.2E-36 193.3 6.9 73 1-73 463-537 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 7.7E-32 2.6E-36 193.2 6.4 72 1-73 470-542 (783)
7 1kk8_A Myosin heavy chain, str 100.0 1.1E-31 3.8E-36 193.4 6.0 72 1-73 469-541 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 2.9E-31 9.9E-36 194.9 6.7 72 1-73 446-517 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 3.7E-31 1.3E-35 193.2 6.7 73 1-73 442-517 (995)
10 1g8x_A Myosin II heavy chain f 100.0 7E-31 2.4E-35 191.9 7.0 73 1-73 463-537 (1010)
11 1i84_S Smooth muscle myosin he 100.0 1.5E-30 5E-35 192.1 6.0 73 1-73 473-548 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 69.1 1.7 5.9E-05 21.4 0.9 26 46-71 25-50 (53)
13 1mof_A Moloney murine leukemia 64.2 2.3 7.9E-05 21.1 0.8 26 46-71 27-52 (55)
14 4g2k_A General control protein 31.1 23 0.00077 20.2 1.4 26 46-71 78-103 (125)
15 1srb_A Sarafotoxins precursor; 29.6 10 0.00034 15.8 -0.1 8 63-70 5-12 (26)
16 1edn_A Endothelin-1; signal po 28.2 19 0.00063 14.9 0.6 9 63-71 5-13 (26)
17 2ldf_A Sarafotoxin-M, SRTX-M; 27.1 13 0.00043 15.4 -0.1 8 63-70 5-12 (26)
18 2xz3_A Maltose ABC transporter 21.5 29 0.00098 23.1 0.8 28 46-73 411-440 (463)
19 2lde_A Sarafotoxin-I3; endothe 20.9 20 0.00067 14.9 -0.1 8 63-70 5-12 (26)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.98 E-value=3.5e-33 Score=200.26 Aligned_cols=73 Identities=40% Similarity=0.770 Sum_probs=71.7
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++|.||++|+|||+++|+|||+||||||++||
T Consensus 461 ~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~ 533 (784)
T 2v26_A 461 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQ 533 (784)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.98 E-value=4e-33 Score=198.11 Aligned_cols=73 Identities=44% Similarity=0.716 Sum_probs=71.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++|.||++|+|||+++|+|||++|||||++||
T Consensus 395 ~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~ 467 (697)
T 1lkx_A 395 NNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAK 467 (697)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999997
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=2e-32 Score=200.46 Aligned_cols=73 Identities=40% Similarity=0.770 Sum_probs=71.8
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|+|||++|||||++|+
T Consensus 465 ~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~ 537 (1052)
T 4anj_A 465 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQ 537 (1052)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=3.8e-32 Score=195.11 Aligned_cols=72 Identities=56% Similarity=0.922 Sum_probs=70.2
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|+|||+++ +|||+||||||++||
T Consensus 446 ~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~ 517 (795)
T 1w7j_A 446 INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPK 517 (795)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCC
Confidence 499999999999999999999999999999999999999999999999999999986 899999999999997
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=6.5e-32 Score=193.31 Aligned_cols=73 Identities=49% Similarity=0.943 Sum_probs=70.5
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~-p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++|+|||+++ |+|||++|||||++||
T Consensus 463 ~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~ 537 (770)
T 1w9i_A 463 VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537 (770)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSS
T ss_pred cCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCC
Confidence 49999999999999999999999999999999999999999999 5999999999984 9999999999999997
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=7.7e-32 Score=193.22 Aligned_cols=72 Identities=49% Similarity=0.969 Sum_probs=68.6
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++|+|||++ |+|||++|||||++||
T Consensus 470 ~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~ 542 (783)
T 4db1_A 470 FNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPK 542 (783)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCC
Confidence 49999999999999999999999999999999999999999999 599999999995 8999999999999997
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=1.1e-31 Score=193.41 Aligned_cols=72 Identities=51% Similarity=1.001 Sum_probs=69.8
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||+|..++| .||++|+|||++ |+|||++|||||++||
T Consensus 469 ~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~ 541 (837)
T 1kk8_A 469 FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPK 541 (837)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTT
T ss_pred cccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCC
Confidence 59999999999999999999999999999999999999999999 599999999996 8999999999999997
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=2.9e-31 Score=194.87 Aligned_cols=72 Identities=56% Similarity=0.922 Sum_probs=70.2
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++ +|||+||||||++|+
T Consensus 446 ~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~ 517 (1080)
T 2dfs_A 446 INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPK 517 (1080)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTT
T ss_pred cCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCC
Confidence 499999999999999999999999999999999999999999999999999999986 899999999999997
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=3.7e-31 Score=193.21 Aligned_cols=73 Identities=49% Similarity=0.915 Sum_probs=70.5
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~--~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++|+|||++ +|+|||++|||||++||
T Consensus 442 ~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~ 517 (995)
T 2ycu_A 442 LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPK 517 (995)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTT
T ss_pred cchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCC
Confidence 59999999999999999999999999999999999999999999 699999999998 48999999999999997
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=7e-31 Score=191.94 Aligned_cols=73 Identities=49% Similarity=0.933 Sum_probs=70.5
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~-~p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|+|||++ +|+|||++|||||++||
T Consensus 463 ~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~ 537 (1010)
T 1g8x_A 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537 (1010)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSS
T ss_pred cCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCC
Confidence 59999999999999999999999999999999999999999999 599999999998 49999999999999997
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.96 E-value=1.5e-30 Score=192.06 Aligned_cols=73 Identities=49% Similarity=0.913 Sum_probs=69.1
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCcccccchhhhccCC
Q psy11322 1 MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKCGK 73 (74)
Q Consensus 1 ~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~~~li~~~--p~Gll~lLDee~~~pk 73 (74)
.|||||||||||||+||++|++++|..++++|..|||.|.+++| .||++|+|||+++ |+|||++|||||+||+
T Consensus 473 ~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~ 548 (1184)
T 1i84_S 473 INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPK 548 (1184)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCC
Confidence 49999999999999999999999999999999999999999999 6999999999962 3499999999999997
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=69.14 E-value=1.7 Score=21.37 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.8
Q ss_pred ChHHHHHHHhcCCCcccccchhhhcc
Q psy11322 46 DNTLCLQLVEGKPNGLLCVLDDQAKC 71 (74)
Q Consensus 46 dn~~~~~li~~~p~Gll~lLDee~~~ 71 (74)
.|.-.+|++..+..|+=..|.|+|-|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 47788999999889999999999975
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=64.21 E-value=2.3 Score=21.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.8
Q ss_pred ChHHHHHHHhcCCCcccccchhhhcc
Q psy11322 46 DNTLCLQLVEGKPNGLLCVLDDQAKC 71 (74)
Q Consensus 46 dn~~~~~li~~~p~Gll~lLDee~~~ 71 (74)
.|...+|++..+..|+=..|.|+|-|
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 47789999999889999999999976
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=31.06 E-value=23 Score=20.25 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.4
Q ss_pred ChHHHHHHHhcCCCcccccchhhhcc
Q psy11322 46 DNTLCLQLVEGKPNGLLCVLDDQAKC 71 (74)
Q Consensus 46 dn~~~~~li~~~p~Gll~lLDee~~~ 71 (74)
-|...+|++.....|+=..+.++|-|
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CCf 103 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCSI 103 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGGC
T ss_pred HHHHHHHHHHHHcCCcHHHhccccee
Confidence 46778898888889999999999986
No 15
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=29.65 E-value=10 Score=15.75 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=6.2
Q ss_pred ccchhhhc
Q psy11322 63 CVLDDQAK 70 (74)
Q Consensus 63 ~lLDee~~ 70 (74)
+.+|.||.
T Consensus 5 s~~DkEC~ 12 (26)
T 1srb_A 5 DMTDKECL 12 (26)
T ss_dssp SSCSHHHH
T ss_pred cccccceE
Confidence 57888886
No 16
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=28.20 E-value=19 Score=14.92 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=6.8
Q ss_pred ccchhhhcc
Q psy11322 63 CVLDDQAKC 71 (74)
Q Consensus 63 ~lLDee~~~ 71 (74)
+.+|.||.+
T Consensus 5 s~~DkEC~Y 13 (26)
T 1edn_A 5 SLMDKECVY 13 (26)
T ss_dssp SSSGGGSTT
T ss_pred ccccccEEE
Confidence 578888873
No 17
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=27.10 E-value=13 Score=15.41 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=6.2
Q ss_pred ccchhhhc
Q psy11322 63 CVLDDQAK 70 (74)
Q Consensus 63 ~lLDee~~ 70 (74)
+.+|.||.
T Consensus 5 s~~DkEC~ 12 (26)
T 2ldf_A 5 DINDKECM 12 (26)
T ss_dssp SSCHHHHH
T ss_pred cccccceE
Confidence 57888886
No 18
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.46 E-value=29 Score=23.10 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=22.6
Q ss_pred ChHHHHHHHhcCCC--cccccchhhhccCC
Q psy11322 46 DNTLCLQLVEGKPN--GLLCVLDDQAKCGK 73 (74)
Q Consensus 46 dn~~~~~li~~~p~--Gll~lLDee~~~pk 73 (74)
.|...+|++..+.. |+-..|.|+|.|..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (463)
T 2xz3_A 411 QNRRGLDWLYIRLGFQSLCPTINEPCCFLR 440 (463)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHTCCCCCCC
T ss_pred hhcchhhHHHHHhCcCccchhhcCCceEEe
Confidence 46667888888777 99999999999854
No 19
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=20.95 E-value=20 Score=14.86 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=6.1
Q ss_pred ccchhhhc
Q psy11322 63 CVLDDQAK 70 (74)
Q Consensus 63 ~lLDee~~ 70 (74)
+++|.||+
T Consensus 5 ~~~DkEC~ 12 (26)
T 2lde_A 5 DMSDLECM 12 (26)
T ss_dssp SSCHHHHH
T ss_pred cccchhhh
Confidence 56788886
Done!