RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11322
         (74 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 71.3 bits (174), Expect = 4e-17
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 63
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449

Query: 64  VLDDQAKCGK 73
           +LD+     K
Sbjct: 450 LLDEACLIAK 459


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.8 bits (165), Expect = 8e-16
 Identities = 31/68 (45%), Positives = 42/68 (61%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 63
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+  
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485

Query: 64  VLDDQAKC 71
           +L+++   
Sbjct: 486 ILEEECMF 493


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.5 bits (159), Expect = 5e-15
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 63
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L 
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483

Query: 64  VLDDQ 68
           +L+++
Sbjct: 484 ILEEE 488


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 64.4 bits (156), Expect = 1e-14
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 60
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 398 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 457

Query: 61  LLCVLDDQ 68
           +L +LD++
Sbjct: 458 VLALLDEE 465


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 63.6 bits (154), Expect = 2e-14
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 63
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445

Query: 64  VLDDQAKCGK 73
           +LD++ K  K
Sbjct: 446 LLDEECKMPK 455


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 59.7 bits (144), Expect = 4e-13
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 4   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 61
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478

Query: 62  LCVLDDQ 68
           L +LD+Q
Sbjct: 479 LALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.6 bits (56), Expect = 0.61
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 9   INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 47
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1vr6a1 c.1.10.4 (A:1-338)
           3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
           (DAHP synthase, AroG) {Thermotoga maritima [TaxId:
           2336]}
          Length = 338

 Score = 24.7 bits (53), Expect = 1.1
 Identities = 5/50 (10%), Positives = 12/50 (24%)

Query: 1   MEIFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 50
           ME    L            +      Y  +   ++G+ +         + 
Sbjct: 111 METAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMY 160


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.4 bits (48), Expect = 6.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 34 KEGIRWRHIEFSD 46
            G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 247

 Score = 22.4 bits (48), Expect = 6.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 34 KEGIRWRHIEFSD 46
          K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.4 bits (48), Expect = 6.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 34 KEGIRWRHIEFSD 46
          K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,647
Number of extensions: 11314
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 17
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)