BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11328
(410 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345489848|ref|XP_001600324.2| PREDICTED: DNA repair endonuclease XPF-like [Nasonia vitripennis]
Length = 1022
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 235/398 (59%), Gaps = 71/398 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L ++P+ VI Y AD++ +RQ+EVYQ + +KVFF+ YG SVEEQAYL+ LRR
Sbjct: 652 LHRTLDEVQPSYVIMYAADISTVRQLEVYQNKYPSISLKVFFLIYGGSVEEQAYLTSLRR 711
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPEES--------------------CGRVIVDMR 105
EK AF+ L+ KT M VP EQDG EP S ++IVDMR
Sbjct: 712 EKDAFDKLVFAKTTMVVPAEQDGKCAEPTPSDSVDEDNTRKGGLIEDQAANVNKIIVDMR 771
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRSELP LLH+R + IEPVTI +GDYILSP+ICVERKSISDLIGSL SGRLY Q M
Sbjct: 772 EFRSELPSLLHQRNIEIEPVTILIGDYILSPEICVERKSISDLIGSLNSGRLYNQAVAMT 831
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
R+YAKP+LLIEFD NKPF LQGNYY+S+D+ +S
Sbjct: 832 RYYAKPMLLIEFDQNKPFGLQGNYYVSKDM----------------------------RS 863
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED--- 282
DIT KLQLLT+HFP+L+L+WS P+ TAQLF ELKQGR +P A A+ IG + D
Sbjct: 864 IDITHKLQLLTMHFPRLKLVWSPSPHATAQLFEELKQGRPQPDAIKAAQIGMDDDTDDKN 923
Query: 283 -YTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNF--------LTELFRAS 333
++YN I+D ++KLPG+ + NL + LN GQ ++ LTE+
Sbjct: 924 IMAEKYNCHIQDLVAKLPGV------HSKNLRQI-LNKGQSLDYLITRSKIELTEMISNE 976
Query: 334 SFFLLLF---RIKPAPGRESNPRPRVTSKNKAAVLNRG 368
S LL+ +K P ES+ V + + V +RG
Sbjct: 977 SDAELLYNALHLKHKPSFESSTNGGVKAA-ASKVKSRG 1013
>gi|307186525|gb|EFN72085.1| DNA repair endonuclease XPF [Camponotus floridanus]
Length = 866
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/413 (45%), Positives = 235/413 (56%), Gaps = 108/413 (26%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P ++I Y AD+ +RQ+EVYQ + +KV+F+ YG SVEEQ YL+ LRREK+AF LI
Sbjct: 509 PNNIILYVADIGTVRQLEVYQNNNPLLDLKVYFLIYGGSVEEQEYLTSLRREKEAFHSLI 568
Query: 75 QEKTNMAVPTEQDG---------VSTEPEESC------------GRVIVDMREFRSELPV 113
KT M VP +QDG V ++ +E+ +VIVDMREFRSELP
Sbjct: 569 NTKTTMIVPEDQDGKSEDCLTFAVQSDNQENTRKGGMQSEAKIIQKVIVDMREFRSELPA 628
Query: 114 LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLL 173
+L+ R + +EPVT+ VGDYIL+P+ICVERKSISDLIGSL SGRLY Q M RHYAKP+L
Sbjct: 629 ILYTRSIKVEPVTLVVGDYILTPEICVERKSISDLIGSLFSGRLYNQAVAMTRHYAKPML 688
Query: 174 LIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQ 233
LIEFD NKPF QGNYY+SRD+ K+++ITAKLQ
Sbjct: 689 LIEFDQNKPFCFQGNYYVSRDL----------------------------KNTEITAKLQ 720
Query: 234 LLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG---QTPNED-YTDRYNA 289
LLTLHFPKL+LIWS P+ TAQLF ELKQGRD+P + VA+ IG T N+ +RYN+
Sbjct: 721 LLTLHFPKLKLIWSPSPHATAQLFEELKQGRDQPDSNVAAKIGADEDTENKQLMVERYNS 780
Query: 290 AIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRE 349
I+DF++KLPG+ + NL VL LN GQ
Sbjct: 781 NIQDFMAKLPGV------HSKNLRVL-LNKGQ---------------------------- 805
Query: 350 SNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402
SL L K +++EL ++ NT LYKALH +
Sbjct: 806 --------------------SLSHLIKFTQEELKEILGNTNDAELLYKALHEK 838
>gi|307215344|gb|EFN90056.1| DNA repair endonuclease XPF [Harpegnathos saltator]
Length = 868
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 220/352 (62%), Gaps = 65/352 (18%)
Query: 10 LRSLK---PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
LR+L P +VI Y AD+ +RQ+EVYQ + +KV+F+ YG SVEEQ YL+ LRRE
Sbjct: 501 LRTLTEHTPNNVILYVADIGIVRQLEVYQNNNPSLNLKVYFLIYGGSVEEQEYLTSLRRE 560
Query: 67 KKAFEYLIQEKTNMAVPTEQDGVS------------TEPEES-----------CGRVIVD 103
K+AF LI KT M VP +QDG S T E + +VIVD
Sbjct: 561 KEAFNSLINTKTTMVVPEDQDGKSEDCLTLAIQSNNTNEENTRKGGMQSEATVIQKVIVD 620
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
MREFRSELP +L+ RG+ IEPVT+ VGDYIL+P+ICVERKS+SDLIGSL SGRLY Q
Sbjct: 621 MREFRSELPAILYTRGIKIEPVTLVVGDYILTPEICVERKSVSDLIGSLLSGRLYNQAVA 680
Query: 164 MCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA 223
M RHYAKP+LLIEFD NKPF QGNYY+SRD+
Sbjct: 681 MTRHYAKPMLLIEFDQNKPFCFQGNYYVSRDL---------------------------- 712
Query: 224 KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN-ED 282
K+++ITAKLQLLTLHFPKL+L+WS P+ TAQLF ELKQ R++P A +A+ IG N ED
Sbjct: 713 KNTEITAKLQLLTLHFPKLKLVWSPSPHATAQLFEELKQTRNQPDANIAAKIGADDNTED 772
Query: 283 ---YTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFR 331
++YN I+DF++KLPG+ + NL L LN GQ + L +L +
Sbjct: 773 KQVMAEKYNPRIQDFMAKLPGV------HSKNLRSL-LNKGQSLDHLIKLTK 817
>gi|357618962|gb|EHJ71746.1| hypothetical protein KGM_15729 [Danaus plexippus]
Length = 838
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 160/331 (48%), Positives = 217/331 (65%), Gaps = 53/331 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK--VFFMQYGESVEEQAYLSDL 63
L L +L+P +I Y +DV+A+RQ+E+Y+C + + K ++F+ + ++VEEQ+YL+ L
Sbjct: 475 LEQTLEALRPEYIILYQSDVSAVRQIELYECKKKPEEPKSKIYFLIHDKTVEEQSYLTSL 534
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG-------VSTEPEESC--------------GRVIV 102
RREK+AFE LIQ K+ M VP+ QDG ++ E ES RVIV
Sbjct: 535 RREKQAFEMLIQAKSVMVVPSYQDGRTDEYFNLNVEENESAVNTRKAGGQVSSVAPRVIV 594
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREFRS+LP LLH+RG+ I+PVTI++GDYIL+PDICVERKSISDLIGSL SGRLYTQ
Sbjct: 595 DMREFRSDLPALLHRRGINIDPVTIAIGDYILTPDICVERKSISDLIGSLNSGRLYTQCT 654
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
QMCR+Y++P+LLIEFD NKPF LQGN+ +S DI+
Sbjct: 655 QMCRNYSRPILLIEFDQNKPFNLQGNFVVSTDISG------------------------- 689
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA-EVASSIGQTPNE 281
+DI KLQLLT+HFP+L+L+WS PY TA+LF+ELK+GR P+ EV + G+ +
Sbjct: 690 ---ADIQQKLQLLTIHFPRLKLVWSPSPYATAELFYELKEGRKNPNVDEVVALSGENTAD 746
Query: 282 DYT-DRYNAAIEDFISKLPGMAEWSRARTLN 311
D +RYN + DF+ KLPG+ + +R +N
Sbjct: 747 DMNYERYNIVVHDFVQKLPGVTSKNISRIMN 777
>gi|340715119|ref|XP_003396067.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF-like
[Bombus terrestris]
Length = 865
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 231/412 (56%), Gaps = 107/412 (25%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
PT++I Y AD++A+RQ+EVYQ + +KV+F+ Y SVEEQ YL+ LRREK+AF LI
Sbjct: 507 PTNIIMYVADMSAVRQIEVYQNNNPSIDLKVYFLIYESSVEEQEYLTSLRREKEAFHLLI 566
Query: 75 QEKTNMAVPTEQDGVS-----------------------TEPEESCGRVIVDMREFRSEL 111
KT M +P +QDG S ++ E VIVDMREFRSEL
Sbjct: 567 NAKTTMVIPEDQDGKSEDCLNLAIQSNADDELSTRKGGLSKISEIPNTVIVDMREFRSEL 626
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P +L+ RG+ +EP+T+ VGDYILSPDICVERKSISDLIGSL SGRLY Q M RHY+KP
Sbjct: 627 PAILYTRGMKVEPITLQVGDYILSPDICVERKSISDLIGSLNSGRLYNQAIAMTRHYSKP 686
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEFD P NKPF QG YY S+D+ ++ IT+K
Sbjct: 687 MLLIEFD---P-----------------------NKPFCFQGYYYASKDV--QNMFITSK 718
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYNAA 290
LQLLTLHFP+L+L+WS GP+ TAQLF ELKQG+D+P+AE A+ +G N++ ++YN
Sbjct: 719 LQLLTLHFPRLKLVWSPGPHATAQLFEELKQGKDQPNAEKAAQVGIEENKEILAEKYNPR 778
Query: 291 IEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRES 350
I+D F+++L
Sbjct: 779 IQD-------------------------------FVSKL--------------------- 786
Query: 351 NPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402
P VTSKN +L +G SL L KL+++EL ++EN T LY A H +
Sbjct: 787 ---PGVTSKNLHLILGKGQSLDHLNKLTKEELTEMIENKTEAEMLYSAFHEK 835
>gi|321455581|gb|EFX66710.1| hypothetical protein DAPPUDRAFT_331812 [Daphnia pulex]
Length = 818
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/338 (49%), Positives = 214/338 (63%), Gaps = 54/338 (15%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L L P VI Y+ DV+ IRQVEVYQ E V+V+FM Y S EEQ+YL+ LR+
Sbjct: 449 LHRTLYKLCPRFVIMYDCDVSFIRQVEVYQATHKEHTVRVYFMFYDASAEEQSYLTSLRK 508
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTE-------PEESCGR------------------V 100
EK+AFE LI+EK M +P +++G + + P ++ V
Sbjct: 509 EKEAFEMLIREKATMVIPEDREGRTDDHPDFVRDPRKASEMALVPLDTRQMTRKDVRQVV 568
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VDMREFRSELP LLH+RG+ I P+TI VGDYIL+PDICVERKS+SDLIGSL +GRLY Q
Sbjct: 569 VVDMREFRSELPSLLHRRGIDILPITIEVGDYILTPDICVERKSLSDLIGSLNNGRLYNQ 628
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
Q+MCRHYAKP+LLIEFD H+KPF LQG YYLS D
Sbjct: 629 SQEMCRHYAKPMLLIEFD--------------------------HDKPFALQGKYYLSND 662
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT-P 279
++ +D+T++LQLLTLHFPKLR++WS GPY TA++F ELK+GR++P A+SI
Sbjct: 663 DSS-LTDVTSRLQLLTLHFPKLRIVWSPGPYATAEIFEELKKGREQPDPAKAASISSDYY 721
Query: 280 NEDYTDRYNAAIEDFISKLPGMAEWSRARTLN-LEVLG 316
E ++YN AI DF+ KLPG+ + R LN +E LG
Sbjct: 722 TEKNAEKYNPAIHDFMMKLPGINTKNIRRVLNKVEDLG 759
>gi|383860837|ref|XP_003705895.1| PREDICTED: DNA repair endonuclease XPF-like [Megachile rotundata]
Length = 865
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 213/340 (62%), Gaps = 61/340 (17%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P ++I Y AD++A+RQ+EVYQ + +KV+F+ YG SVEEQ YL+ LRREK+AF LI
Sbjct: 507 PNNIIMYVADISAVRQIEVYQNNNPSIDLKVYFLIYGGSVEEQEYLTSLRREKEAFHLLI 566
Query: 75 QEKTNMAVPTEQDG------------------------VSTEPEESCGRVIVDMREFRSE 110
KT M +P +QDG V +PE + +IVDMREFRSE
Sbjct: 567 NAKTKMVIPDDQDGKTEDCLSLAIQKDTDDETNTRKGGVPIQPE-APNTIIVDMREFRSE 625
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP +L+ RG+ IEPVT+ VGDYILSPDICVERKSISDLIGSL SGRLY Q M RHY+K
Sbjct: 626 LPAILYTRGMKIEPVTLQVGDYILSPDICVERKSISDLIGSLNSGRLYNQAISMTRHYSK 685
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
+LLIEF D NKPF QG YY S+DI K+ IT+
Sbjct: 686 AMLLIEF--------------------------DPNKPFCFQGYYYASKDI--KNMFITS 717
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYNA 289
KLQLLTLHFP+L+L+WS GP+ TAQLF ELKQGR++P A A+ IG N+ +++N
Sbjct: 718 KLQLLTLHFPRLKLVWSPGPHATAQLFEELKQGREQPDAAKAAEIGMEENKQIAVEKFNP 777
Query: 290 AIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTEL 329
I+DF++KLPG+ T NL+ + L+ GQ + L EL
Sbjct: 778 RIQDFVAKLPGIT------TKNLQTV-LSKGQSLDHLNEL 810
>gi|350414750|ref|XP_003490406.1| PREDICTED: DNA repair endonuclease XPF-like isoform 2 [Bombus
impatiens]
Length = 836
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 229/412 (55%), Gaps = 107/412 (25%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P ++I Y AD++A+RQ+EVYQ + +KV+F+ Y SVEEQ YL+ LRREK+AF LI
Sbjct: 478 PNNIIMYVADMSAVRQIEVYQNNNPSIDLKVYFLIYESSVEEQEYLTSLRREKEAFHLLI 537
Query: 75 QEKTNMAVPTEQDGVS-----------------------TEPEESCGRVIVDMREFRSEL 111
KT M +P +QDG S ++ E VIVDMREFRSEL
Sbjct: 538 NAKTTMVIPEDQDGKSDDCLNLAIQSNADGELSTRKGGLSKISEIPNTVIVDMREFRSEL 597
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P +L+ RG+ +EP+T+ VGDYILSPDICVERKSISDLIGSL SGRLY Q M RHY+KP
Sbjct: 598 PAILYTRGMKVEPITLQVGDYILSPDICVERKSISDLIGSLNSGRLYNQAIAMTRHYSKP 657
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEFD P NKPF QG YY S+D+ ++ IT+K
Sbjct: 658 MLLIEFD---P-----------------------NKPFCFQGYYYASKDV--QNMFITSK 689
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED-YTDRYNAA 290
LQLLTLHFP+L+L+WS GP+ TAQLF ELKQG+D+P+AE + +G N++ ++YN
Sbjct: 690 LQLLTLHFPRLKLVWSPGPHATAQLFEELKQGKDQPNAEKVAQVGIEENKEILAEKYNPR 749
Query: 291 IEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRES 350
I+D F+++L
Sbjct: 750 IQD-------------------------------FVSKL--------------------- 757
Query: 351 NPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402
P VTSKN +L +G SL L KL+++EL ++EN T LY A H +
Sbjct: 758 ---PGVTSKNLHLILGKGQSLDHLNKLTKEELIEMIENKTEAEMLYSAFHEK 806
>gi|350414747|ref|XP_003490405.1| PREDICTED: DNA repair endonuclease XPF-like isoform 1 [Bombus
impatiens]
Length = 865
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 229/412 (55%), Gaps = 107/412 (25%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P ++I Y AD++A+RQ+EVYQ + +KV+F+ Y SVEEQ YL+ LRREK+AF LI
Sbjct: 507 PNNIIMYVADMSAVRQIEVYQNNNPSIDLKVYFLIYESSVEEQEYLTSLRREKEAFHLLI 566
Query: 75 QEKTNMAVPTEQDGVS-----------------------TEPEESCGRVIVDMREFRSEL 111
KT M +P +QDG S ++ E VIVDMREFRSEL
Sbjct: 567 NAKTTMVIPEDQDGKSDDCLNLAIQSNADGELSTRKGGLSKISEIPNTVIVDMREFRSEL 626
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P +L+ RG+ +EP+T+ VGDYILSPDICVERKSISDLIGSL SGRLY Q M RHY+KP
Sbjct: 627 PAILYTRGMKVEPITLQVGDYILSPDICVERKSISDLIGSLNSGRLYNQAIAMTRHYSKP 686
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEFD P NKPF QG YY S+D+ ++ IT+K
Sbjct: 687 MLLIEFD---P-----------------------NKPFCFQGYYYASKDV--QNMFITSK 718
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYNAA 290
LQLLTLHFP+L+L+WS GP+ TAQLF ELKQG+D+P+AE + +G N++ ++YN
Sbjct: 719 LQLLTLHFPRLKLVWSPGPHATAQLFEELKQGKDQPNAEKVAQVGIEENKEILAEKYNPR 778
Query: 291 IEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRES 350
I+D F+++L
Sbjct: 779 IQD-------------------------------FVSKL--------------------- 786
Query: 351 NPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402
P VTSKN +L +G SL L KL+++EL ++EN T LY A H +
Sbjct: 787 ---PGVTSKNLHLILGKGQSLDHLNKLTKEELIEMIENKTEAEMLYSAFHEK 835
>gi|189237991|ref|XP_001812786.1| PREDICTED: similar to DNA repair endonuclease xp-f / mei-9 / rad1
[Tribolium castaneum]
gi|270008119|gb|EFA04567.1| meiotic 9 [Tribolium castaneum]
Length = 870
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/320 (49%), Positives = 207/320 (64%), Gaps = 51/320 (15%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS-EVKVKVFFMQYGESVEEQAYLSDL 63
+L L + P+ +I Y++ + AIR++E+++ + E +K +F+ +GE+VEEQ+YL+ L
Sbjct: 510 NLQRTLEEINPSFIIMYHSSITAIREIEMFEAHRKRETSLKTYFLIHGETVEEQSYLTSL 569
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGVST--------------------EPEESCGR-VIV 102
RREK+AFEYLI+ K+ M VP +QDG S PEE+ + VIV
Sbjct: 570 RREKEAFEYLIETKSKMVVPEDQDGKSDLCLTLQRDLKSPSKSTRQGGRPEEAPRKYVIV 629
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREFRS+LP L+HKRGL IEPVTI+VGDYIL+P+ICVERKS+SDL+GSL SGRLY Q
Sbjct: 630 DMREFRSDLPALIHKRGLDIEPVTITVGDYILTPEICVERKSLSDLVGSLNSGRLYQQCT 689
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
QM R+YAKP+LLIEFD NKPF Q Y +S D
Sbjct: 690 QMFRYYAKPMLLIEFDQNKPFSWQNQYMVSSD---------------------------- 721
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
S DI KL LLTLHFPKL++IWS PY TAQLF ELK+G++EP+ E A++IG + D
Sbjct: 722 TNSFDIQKKLLLLTLHFPKLKIIWSPSPYATAQLFEELKEGKEEPNVEYAAAIGGNQDLD 781
Query: 283 YTD-RYNAAIEDFISKLPGM 301
+ +YN+ I DF+ KLPG+
Sbjct: 782 LVETKYNSNIYDFVQKLPGI 801
>gi|328784167|ref|XP_001121259.2| PREDICTED: DNA repair endonuclease XPF-like [Apis mellifera]
Length = 831
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 166/339 (48%), Positives = 213/339 (62%), Gaps = 59/339 (17%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P+++I Y AD++AIRQ+EVYQ + +KV+F+ YG SVEEQ YL+ LRREK+AF LI
Sbjct: 473 PSNIIMYVADLSAIRQIEVYQNNNPSIDLKVYFLIYGGSVEEQEYLTSLRREKEAFHALI 532
Query: 75 QEKTNMAVPTEQDG-----------------VSTEP------EESCGRVIVDMREFRSEL 111
KT M +P +QDG V+T E+ VIVDMREFRSEL
Sbjct: 533 NSKTTMVIPEDQDGKTEDCLSLAIQSDVDSEVNTRKGGLPKISEAPNTVIVDMREFRSEL 592
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P +L+ RG+ IEPVT+ VGDYILSPDICVERKS+SDLIGSL SGRLY Q M R+Y KP
Sbjct: 593 PAILYTRGMKIEPVTLQVGDYILSPDICVERKSVSDLIGSLNSGRLYNQAIAMTRYYNKP 652
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEFD NKPF QG YY S+D+ ++ I +K
Sbjct: 653 MLLIEFDP--------------------------NKPFCFQGYYYASKDV--QNMFIISK 684
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYNAA 290
LQLLTLHFP+L+L+WS GP+ TAQLF ELK G+D+P A+ IG N++ D+YN+
Sbjct: 685 LQLLTLHFPRLKLVWSPGPHATAQLFEELKGGKDQPDPIKAAQIGVEENKEIPVDKYNSR 744
Query: 291 IEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTEL 329
I+DF+SKLPG+ T NL ++ L+ GQ + L +L
Sbjct: 745 IQDFVSKLPGVT------TKNLHLI-LSKGQSLDHLNKL 776
>gi|157126764|ref|XP_001654742.1| DNA repair endonuclease xp-f / mei-9 / rad1 [Aedes aegypti]
gi|108882528|gb|EAT46753.1| AAEL002098-PA, partial [Aedes aegypti]
Length = 944
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 202/327 (61%), Gaps = 58/327 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE---VKVKVFFMQYGESVEEQAYLSD 62
L L +KP ++ Y+++V AIRQ+EVY+ Q +V+VF + + ++VEEQ+YL+
Sbjct: 591 LDRTLEEIKPRYIVLYHSNVTAIRQIEVYEARQQRQELARVRVFVIIHSKTVEEQSYLTS 650
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDG------------------------VSTEPEESCG 98
LRREK+AFE LI K M VP QDG VSTE +
Sbjct: 651 LRREKQAFELLIDTKRTMVVPEYQDGKSEDAITMLQKKQEISTRQAGGQAVSTESIIT-P 709
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+IVDMREFRS+LP L+H+RG+ + P+TI++GDYIL+P+ICVERKSISDLIGSL SGRLY
Sbjct: 710 RIIVDMREFRSDLPCLIHRRGIEVVPLTITIGDYILTPEICVERKSISDLIGSLNSGRLY 769
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q QM R YAKP+LLIEFD NKPF LQ N+ +S
Sbjct: 770 NQCVQMTRCYAKPILLIEFDQNKPF--------------------------HLQRNFMMS 803
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT 278
D ++ ++DI KLQLLTLHFPKL+L+WS PY TAQLF ELKQG+ EP EVA+ +G
Sbjct: 804 GDSSSSNADIMQKLQLLTLHFPKLKLVWSPSPYATAQLFEELKQGKQEPEPEVATLLGSD 863
Query: 279 ----PNEDYTDRYNAAIEDFISKLPGM 301
E+ DR N + DF+ KLPG+
Sbjct: 864 EAGGEGENIVDRTNPNVHDFLIKLPGI 890
>gi|198467671|ref|XP_001354472.2| GA17620 [Drosophila pseudoobscura pseudoobscura]
gi|198149354|gb|EAL31525.2| GA17620 [Drosophila pseudoobscura pseudoobscura]
Length = 973
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 203/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQ---CAQSEVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ C ++KV+F+ + +VEEQ+YL+
Sbjct: 585 LEHILEKLQPHHVVMYNTNVTAIRQLEVFEARRCLPPAERMKVYFLIHARTVEEQSYLTS 644
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEP----------------------------E 94
LRREK AFE +I+ K+ M VP QDG + E +
Sbjct: 645 LRREKAAFELIIETKSKMVVPEYQDGKTDEAFVLYKSYDDEPGDNAQSRQAGGQKQPQGQ 704
Query: 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+ +VIVDMREFRS+LP L+HKRGL + P+TIS+GDYIL+P++CVERKSISDLIGSL S
Sbjct: 705 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTISIGDYILTPEVCVERKSISDLIGSLNS 764
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 765 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 800
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ AA ++DI KLQLLTLHFP+LRLIWS PY TAQLF ELK G+ EP +A +
Sbjct: 801 --LSQQTAATNADIVQKLQLLTLHFPRLRLIWSPSPYATAQLFEELKLGKPEPDPCLAVA 858
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G + P +YN+ I DF+ +LPG+
Sbjct: 859 LGSEEPVAGEQLQYNSGIHDFLLRLPGV 886
>gi|194764346|ref|XP_001964291.1| GF21474 [Drosophila ananassae]
gi|190619216|gb|EDV34740.1| GF21474 [Drosophila ananassae]
Length = 972
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 204/329 (62%), Gaps = 60/329 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +VAAIRQ+EV++ + ++KV+F+ + +SVEEQAYL+
Sbjct: 584 LEHMLEQLQPHYVVMYNTNVAAIRQIEVFEARRRLPPADRMKVYFLIHAKSVEEQAYLTS 643
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE +I K+ M +P QDG + E P
Sbjct: 644 LRREKAAFELIIDTKSKMVIPEYQDGKTDEAFILYKTYDDELVEDNAQSRRAGGQAPKTP 703
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
+E+ +VIVDMREFRS+LP L+HKRGL + P+TIS+GDYIL+P++CVERKSISDLIGSL
Sbjct: 704 KET-AKVIVDMREFRSDLPCLIHKRGLEVLPLTISIGDYILTPEVCVERKSISDLIGSLN 762
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
SGRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 763 SGRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM------------- 799
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A
Sbjct: 800 ---LSQQTTSANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQQAV 856
Query: 274 SIG-QTPNEDYTDRYNAAIEDFISKLPGM 301
++G + P +N+ I DF+ +LPG+
Sbjct: 857 ALGSEEPTAGEQLHFNSGIYDFLLRLPGV 885
>gi|194888165|ref|XP_001976868.1| GG18547 [Drosophila erecta]
gi|190648517|gb|EDV45795.1| GG18547 [Drosophila erecta]
Length = 965
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 204/329 (62%), Gaps = 60/329 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 577 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 636
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I+ K+ M +P QDG + E P
Sbjct: 637 LRREKAAFEFIIETKSRMVIPKYQDGKTDEAFLLLKNYDDDLTDENAKSRQAGGQAPKAP 696
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
+E+ +VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL
Sbjct: 697 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLN 755
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
SGRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 756 SGRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM------------- 792
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A+
Sbjct: 793 ---LSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAA 849
Query: 274 SIG-QTPNEDYTDRYNAAIEDFISKLPGM 301
++G P +N+ I DF+ +LPG+
Sbjct: 850 ALGSDEPTAGEQLHFNSGIYDFLLRLPGV 878
>gi|195133562|ref|XP_002011208.1| GI16132 [Drosophila mojavensis]
gi|193907183|gb|EDW06050.1| GI16132 [Drosophila mojavensis]
Length = 966
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/333 (47%), Positives = 207/333 (62%), Gaps = 65/333 (19%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P VI YN +V AIRQ+EV++ + + ++K++F+ + +VEEQ+YL+
Sbjct: 575 LEHMLEQLQPHYVIMYNTNVTAIRQLEVFEARRRLPPDDRMKIYFLIHARTVEEQSYLTS 634
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEP---------EESCG--------------- 98
LRREK AFE +I+ K+ M +P QDG + E EE
Sbjct: 635 LRREKSAFELIIETKSKMVIPEYQDGKTDEAFVLYKSYDDEEPTNAQTRQGAATGVALAS 694
Query: 99 -----RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
++IVDMREFRS+LP L+H+RGL + PVTI++GDYIL+P++CVERKSISDLIGSL
Sbjct: 695 ARVTPKIIVDMREFRSDLPCLIHRRGLEVVPVTITIGDYILTPEMCVERKSISDLIGSLN 754
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
SGRLY Q QM R+YAKP+LLIEFD N+PF LQG KF+
Sbjct: 755 SGRLYNQCVQMQRYYAKPILLIEFDQNRPFHLQG----------KFM------------- 791
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
LS+ A ++DI KLQLLTLHFP+LRLIWS PY TAQLF ELK G++EP A+VA+
Sbjct: 792 ---LSQQTTATNADIMQKLQLLTLHFPRLRLIWSPSPYATAQLFEELKLGKEEPDAQVAA 848
Query: 274 SIGQ-----TPNEDYTDRYNAAIEDFISKLPGM 301
++G P E +YN AI DF+ +LPG+
Sbjct: 849 ALGSDEAGPAPGEQL--QYNNAIHDFLLRLPGV 879
>gi|17933560|ref|NP_525068.1| meiotic 9 [Drosophila melanogaster]
gi|73920231|sp|Q24087.2|XPF_DROME RecName: Full=DNA repair endonuclease XPF; AltName: Full=Protein
meiotic 9
gi|7290484|gb|AAF45938.1| meiotic 9 [Drosophila melanogaster]
Length = 961
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 202/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 573 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 632
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 633 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 692
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL S
Sbjct: 693 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNS 752
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 753 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 788
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A++
Sbjct: 789 --LSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAA 846
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G P +N+ I DF+ +LPG+
Sbjct: 847 LGSDEPTAGEQLHFNSGIYDFLLRLPGV 874
>gi|195565033|ref|XP_002106111.1| mei-9 [Drosophila simulans]
gi|194203482|gb|EDX17058.1| mei-9 [Drosophila simulans]
Length = 602
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/329 (47%), Positives = 201/329 (61%), Gaps = 60/329 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQ---SEVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 214 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 273
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 274 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 333
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
+E+ +VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+P+ICVERKSISDLIGSL
Sbjct: 334 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPEICVERKSISDLIGSLN 392
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
SGRLY Q QM RHYAKP+LLIEFD NKPF LQG
Sbjct: 393 SGRLYNQCVQMQRHYAKPILLIEFDQNKPF--------------------------HLQG 426
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A+
Sbjct: 427 KFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAA 486
Query: 274 SIG-QTPNEDYTDRYNAAIEDFISKLPGM 301
++G P +N+ I DF+ +LPG+
Sbjct: 487 ALGSDEPTAGEQLHFNSGIYDFLLRLPGV 515
>gi|242020150|ref|XP_002430519.1| protein mei-9, putative [Pediculus humanus corporis]
gi|212515676|gb|EEB17781.1| protein mei-9, putative [Pediculus humanus corporis]
Length = 932
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 164/427 (38%), Positives = 230/427 (53%), Gaps = 107/427 (25%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L KP +I Y+ ++ +RQVEVYQ E+++KV+F+ +G ++EEQ+YL+ LR+
Sbjct: 567 LPKMLEEQKPRWIIIYDPEMTLVRQVEVYQRKNPEIQIKVYFLVFGGTIEEQSYLTSLRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTE----------------------QDGVSTEPEESCGRVIVD 103
EK+AF++LI+EK + +PT+ + G P++ ++IVD
Sbjct: 627 EKEAFDFLIEEKARIVIPTDLNDYPELVRDDESAAAQFLNKTRKGGIDSPKKGNSKIIVD 686
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
MREF+SELP ++H RG+ IEP+TI+VGDYIL+PDIC+ERKS+SDLI SL SGRLY Q
Sbjct: 687 MREFKSELPAIIHARGIEIEPLTITVGDYILTPDICLERKSVSDLIQSLNSGRLYNQATA 746
Query: 164 MCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA 223
M R+Y+KP+LLIEFD + KPF+LQ YYLS D A
Sbjct: 747 MTRYYSKPMLLIEFDKD--------------------------KPFDLQSRYYLSTD--A 778
Query: 224 KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY 283
S + KLQLLTLHFP+LR+IWS P TAQLF ELKQG EP + A IG
Sbjct: 779 SSDQLVTKLQLLTLHFPQLRIIWSPNPTATAQLFEELKQGHPEPDSATALGIGIEETATD 838
Query: 284 TDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIK 343
D++N I+ F+S+LPG++ N+ VL
Sbjct: 839 EDKFNPGIKKFMSQLPGVS------NKNINVL---------------------------- 864
Query: 344 PAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR- 402
L+RG SL L LS+ E+ +++N+ G +LY ++H +
Sbjct: 865 ---------------------LSRGKSLDHLESLSQTEISDILQNSVEGESLYNSIHHKF 903
Query: 403 -PEVSSG 408
P+ SS
Sbjct: 904 HPDESSS 910
>gi|25009805|gb|AAN71074.1| AT15210p [Drosophila melanogaster]
Length = 961
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 202/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 573 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 632
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 633 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 692
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL S
Sbjct: 693 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNS 752
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 753 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 788
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A++
Sbjct: 789 --LSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAA 846
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G P +N+ I DF+ +LPG+
Sbjct: 847 LGSDEPMAGEQLHFNSGIYDFLLRLPGV 874
>gi|195047187|ref|XP_001992289.1| GH24669 [Drosophila grimshawi]
gi|193893130|gb|EDV91996.1| GH24669 [Drosophila grimshawi]
Length = 988
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/339 (46%), Positives = 204/339 (60%), Gaps = 66/339 (19%)
Query: 3 AQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAY 59
A L L L+P V+ YN +V AIRQ+EV++ + +++++F+ + +VEEQ+Y
Sbjct: 589 AMALEHMLDQLQPHYVVMYNTNVTAIRQLEVFEARRRLPPAERMRIYFLIHARTVEEQSY 648
Query: 60 LSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEP--------EESCG------------- 98
L+ LRREK AFE +I K+ M +P QDG + E +E
Sbjct: 649 LTSLRREKSAFELIIDTKSKMVIPEYQDGKTDEAFVLYKSYEDEDANSANANAKTRQGAT 708
Query: 99 ------------RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSIS 146
+VIVDMREFRS+LP L+H+RGL + PVTI++GDYIL+PDICVERKSIS
Sbjct: 709 MGVALNAARVTPKVIVDMREFRSDLPCLIHRRGLEVLPVTITIGDYILTPDICVERKSIS 768
Query: 147 DLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHN 206
DLIGSL SGRLY Q QM R+YAKP+LLIEFD N+PF LQG KF+
Sbjct: 769 DLIGSLNSGRLYNQCVQMQRYYAKPILLIEFDQNRPFHLQG----------KFM------ 812
Query: 207 KPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDE 266
LS+ A ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ E
Sbjct: 813 ----------LSQQTTATNADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKSE 862
Query: 267 PSAEVASSIGQTPNEDYTD----RYNAAIEDFISKLPGM 301
P A+VA+++G + +YN AI DF+ +LPG+
Sbjct: 863 PDAQVAAAVGSEESSAAASSEQLQYNNAIHDFLLRLPGV 901
>gi|195477160|ref|XP_002100113.1| GE16862 [Drosophila yakuba]
gi|194187637|gb|EDX01221.1| GE16862 [Drosophila yakuba]
Length = 965
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 201/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V IRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 577 LERMLEQLQPHYVVMYNMNVTVIRQLEVFEARRRLPPAERMKVYFLIHARTVEEQAYLTS 636
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PE-- 94
LRREK AFE +I K+ M +P QDG + E PE
Sbjct: 637 LRREKAAFELIIDTKSKMVIPKYQDGKTDEAFLLFKNYDDELTDENAKSRQAGGQAPEAP 696
Query: 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+ +VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+P+ICVERKSISDLIGSL S
Sbjct: 697 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPEICVERKSISDLIGSLNS 756
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 757 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 792
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A++
Sbjct: 793 --LSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAA 850
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G P R+N+ I DF+ +LPG+
Sbjct: 851 LGSDEPTAGEQLRFNSGIYDFLLRLPGV 878
>gi|195162439|ref|XP_002022063.1| GL14183 [Drosophila persimilis]
gi|194103961|gb|EDW26004.1| GL14183 [Drosophila persimilis]
Length = 973
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 201/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQ---CAQSEVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ C ++KV+F+ + +VEEQ+YL+
Sbjct: 585 LEHILEKLQPHHVVMYNTNVTAIRQLEVFEARRCLPPAERMKVYFLIHARTVEEQSYLTS 644
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEP----------------------------E 94
LRREK AFE +I+ K+ M VP QDG + E +
Sbjct: 645 LRREKAAFELIIETKSKMVVPEYQDGKTDEAFVLYKSYDDEPGDNAQSRQAGGQKQPQRQ 704
Query: 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+ +VIVDMREFRS+LP L+HKRGL + P+TIS+GDYIL+P++CVERKSISDLIGSL S
Sbjct: 705 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTISIGDYILTPEVCVERKSISDLIGSLNS 764
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF + AKF+
Sbjct: 765 GRLYNQCVQMQRHYAKPILLIEFDQNKPFTCR----------AKFM-------------- 800
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ AA ++DI KLQLLTLHFP+LRLIWS PY TAQLF ELK G+ EP A +
Sbjct: 801 --LSQQTAATNADIVQKLQLLTLHFPRLRLIWSPSPYATAQLFEELKLGKPEPDPCQAVA 858
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G + P +YN+ I DF+ +LPG+
Sbjct: 859 LGSEEPVAGEQLQYNSGIHDFLLRLPGV 886
>gi|195397423|ref|XP_002057328.1| GJ16410 [Drosophila virilis]
gi|194147095|gb|EDW62814.1| GJ16410 [Drosophila virilis]
Length = 991
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 205/337 (60%), Gaps = 64/337 (18%)
Query: 3 AQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK---VKVFFMQYGESVEEQAY 59
A + L L+P VI YN +V AIRQ+EV++ + +K++F+ + +VEEQ+Y
Sbjct: 594 AMAVEHMLDQLQPHYVIMYNTNVTAIRQLEVFEARRRRPPAERMKIYFLIHARTVEEQSY 653
Query: 60 LSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEP----------EESCG----------- 98
L+ LRREK AFE +I K+ M +P QDG + E EES
Sbjct: 654 LTSLRREKSAFELIIDTKSKMVIPEYQDGKTDEAFVLYKRYDDEEESANAKTRQGAAMGV 713
Query: 99 ---------RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
+VIVDMREFRS+LP L+H+RGL + PVTI++GDYIL+PD+CVERKSISDLI
Sbjct: 714 ALSSARVTPKVIVDMREFRSDLPCLIHRRGLEVLPVTITIGDYILTPDVCVERKSISDLI 773
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF 209
GSL SGRLY Q QM R+YAKP+LLIEFD N+PF LQG KF+
Sbjct: 774 GSLNSGRLYNQCVQMQRYYAKPILLIEFDQNRPFHLQG----------KFM--------- 814
Query: 210 ELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA 269
LS+ A ++DI KLQLLTLHFP+LRLIWS PY TAQLF ELK G+ EP A
Sbjct: 815 -------LSQQTTATNADIMQKLQLLTLHFPRLRLIWSPSPYATAQLFEELKLGKPEPDA 867
Query: 270 EVASSIGQTPNEDYTD-----RYNAAIEDFISKLPGM 301
+VA+++G + +YN+AI DF+ +LPG+
Sbjct: 868 QVAAALGSDESGGAAAAGDQLQYNSAIYDFLLRLPGI 904
>gi|924919|gb|AAC46917.1| MEI-9 [Drosophila melanogaster]
gi|1585596|prf||2201389A mei-9 gene
Length = 926
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 200/328 (60%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V IRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 530 LEHMLEQLQPHYVVMYNMNVTPIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 589
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 590 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 649
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL S
Sbjct: 650 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNS 709
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 710 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 745
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ + + DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A++
Sbjct: 746 --LSQQTSMANRDIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAA 803
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G P +N+ I DF+ +LPG+
Sbjct: 804 LGSDEPMAGEQLHFNSGIYDFLLRLPGV 831
>gi|195456914|ref|XP_002075343.1| GK17500 [Drosophila willistoni]
gi|194171428|gb|EDW86329.1| GK17500 [Drosophila willistoni]
Length = 997
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 202/338 (59%), Gaps = 65/338 (19%)
Query: 3 AQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAY 59
A L + L L+P V+ YN +V AIRQ+EV++ + + ++KV+F+ + +VEEQ+Y
Sbjct: 599 AMALENMLEQLQPHYVVMYNTNVMAIRQLEVFEARRRLPPKERMKVYFLIHARTVEEQSY 658
Query: 60 LSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEP-------------------------- 93
L+ LRREK AFE +I K+ M +P QDG + E
Sbjct: 659 LTSLRREKSAFELIIDTKSKMVIPEYQDGKTDEAFILYRPFDNESGDIDSANAKSRQAGG 718
Query: 94 ----EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
+ +VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+P++CVERKSISDLI
Sbjct: 719 QARSKTETPKVIVDMREFRSDLPCLIHKRGLEVVPLTITIGDYILTPEVCVERKSISDLI 778
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF 209
GSL SGRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 779 GSLNSGRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM--------- 819
Query: 210 ELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA 269
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK + EP A
Sbjct: 820 -------LSQQTTSTNADIMQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLDKPEPDA 872
Query: 270 EVA------SSIGQTPNEDYTDRYNAAIEDFISKLPGM 301
+ A S +G+ +YN AI DF+ +LPG+
Sbjct: 873 QQAVALGGGSELGEPGATIEQLQYNPAIYDFLLRLPGI 910
>gi|312373439|gb|EFR21182.1| hypothetical protein AND_17419 [Anopheles darlingi]
Length = 1038
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 203/345 (58%), Gaps = 60/345 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV---KVKVFFMQYGESVEEQAYLSD 62
L L + P +I Y+ +V AIRQ+EVY+ Q +V+VF + Y ++VEEQ+YL+
Sbjct: 646 LDRTLEQINPRYIIMYHTNVTAIRQIEVYEARQQRAEIARVRVFAIIYSKTVEEQSYLTS 705
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVS-----------------------TEPEESCG- 98
LRREK+AFE LI K M VP QDG S +P E
Sbjct: 706 LRREKQAFELLIDTKRTMVVPEYQDGKSEDTIMMLQKKQEISSRQAGGQEAKDPNEIVTP 765
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RVIVDMREFRS+LP L+H+RG+ + P+TI+VGDYI++P+ICVERKSISDLIGSL SGRLY
Sbjct: 766 RVIVDMREFRSDLPCLIHRRGIDVVPLTITVGDYIITPEICVERKSISDLIGSLNSGRLY 825
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q QM R+YAKP+LLIEFD NKPF Q Y++ G+
Sbjct: 826 NQCIQMTRYYAKPILLIEFDQNKPFHFQ-RYFM-----------------VSGGGSSSTG 867
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT 278
+++ DI AKLQLLT+HFPKLRL+WS PY TAQLF ELKQG+ EP + VA IG
Sbjct: 868 GGGTSQNEDIMAKLQLLTIHFPKLRLVWSPSPYATAQLFEELKQGKSEPDSAVAVKIG-- 925
Query: 279 PNEDYTDRY-------------NAAIEDFISKLPGMAEWSRARTL 310
+E TD +A +++F+ KLPG+ + R +
Sbjct: 926 CDEVSTDEIESSGTTDGALLANSADVQEFLIKLPGITSRNIGRVM 970
>gi|347968591|ref|XP_563334.4| AGAP002805-PA [Anopheles gambiae str. PEST]
gi|333467933|gb|EAL40837.4| AGAP002805-PA [Anopheles gambiae str. PEST]
Length = 1049
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/339 (44%), Positives = 207/339 (61%), Gaps = 49/339 (14%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE---VKVKVFFMQYGESVEEQAYLSD 62
L L ++P ++ Y+ +V AIRQ+EVY+ Q +V+V+ + + ++VEEQ+YL+
Sbjct: 665 LDRTLEQIRPRYIVMYHTNVTAIRQIEVYEARQQRQEMARVRVYAIIHSKTVEEQSYLTS 724
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVS-----------------------TEPEESCG- 98
LRREK+AFE LI+ K M VP QDG S +P E
Sbjct: 725 LRREKQAFELLIETKRTMVVPEYQDGKSEDTIMMLQKKQEISSRQAGGQEAKDPAEIVTP 784
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RVIVDMREFRS+LP L+H+RG+ + P+TI++GDYI++P+ICVERKSISDLIGSL SGRLY
Sbjct: 785 RVIVDMREFRSDLPCLIHRRGIDVVPLTITIGDYIITPEICVERKSISDLIGSLNSGRLY 844
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q QM R+YAKP+LLIEFD NKPF Q + +S ++ + S
Sbjct: 845 NQCVQMTRYYAKPILLIEFDQNKPFHFQRYFMVSSAGSSS---------------STTSS 889
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG-- 276
+ + DI AKLQLLT+HFPKLRL+WS PY+TAQLF ELKQG+ EP +VA IG
Sbjct: 890 SSGGSTNEDIMAKLQLLTIHFPKLRLVWSPSPYSTAQLFEELKQGKAEPDPDVAVKIGSD 949
Query: 277 QTPNEDYTDRYNAA-----IEDFISKLPGMAEWSRARTL 310
+ NE+ +A +++F+ KLPG+ + R +
Sbjct: 950 EAGNEESDTLVDAGLANVEVQEFLLKLPGITTRNVGRVM 988
>gi|363739513|ref|XP_414734.3| PREDICTED: DNA repair endonuclease XPF [Gallus gallus]
Length = 903
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/321 (45%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 553 LTRVLHEVEPRYVVLYDAELTFVRQLEIYKAGRPGKPLRVYFLIYGSSTEEQRYLTALRK 612
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+E+ +M VP E++G VST+ ++ G+ +I
Sbjct: 613 EKEAFEKLIRERASMVVPEEREGRDDTNLDLIRDVKPASVSTDTRKAGGQAQKTAQQTII 672
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKSISDLIGSL +GRLYTQ
Sbjct: 673 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSISDLIGSLNNGRLYTQC 732
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD NKPF L L ++I+
Sbjct: 733 ISMSRYYKRPILLIEFDPNKPFSLIPQGSLRQEIS------------------------- 767
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+T+KL LLTLHFPKLR++W P+ TA+LF ELKQ R +P AE A ++ +
Sbjct: 768 ---SSDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNRPQPDAETAMAVTADSET 824
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+D+YN +DF+ K+PG+
Sbjct: 825 LPESDKYNPGPQDFLLKMPGV 845
>gi|427799027|gb|JAA64965.1| Putative structure-specific endonuclease ercc1-xpf catalytic
component xpf/ercc4, partial [Rhipicephalus pulchellus]
Length = 860
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 201/325 (61%), Gaps = 55/325 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L S++P +I Y+ ++A +R++E+YQ +++ ++V+F+ Y +S++EQ YL+ LRR
Sbjct: 527 LQQLLHSVEPKYIILYDVNIATVREIEMYQATRAKEVLRVYFLMYEDSIDEQRYLTSLRR 586
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGV-------------STEPEES------------CGRV 100
EK AFE+LI+EK+ M +P EQDG S EP S RV
Sbjct: 587 EKDAFEFLIREKSIMVIPDEQDGKGEYHPDLIDDLGKSNEPASSRKAGGAVVPVSTSRRV 646
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVD+REFRSELP L+H+RG+ ++PVTI VGDYIL+P+ICVERKS++DLIGSL +GRLY Q
Sbjct: 647 IVDLREFRSELPSLIHRRGINVQPVTIEVGDYILTPEICVERKSLNDLIGSLNNGRLYNQ 706
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
Q MCR+Y +P+LLIEF+ N+PF LQG + S +
Sbjct: 707 AQAMCRYYKRPVLLIEFNQNQPFCLQGKHVPSSE-------------------------- 740
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
+ S +KL LLT+HFP+LRL+W PY TA++F LK G++EP+ A ++ +
Sbjct: 741 -STSSQTFVSKLILLTMHFPRLRLLWCQSPYATAEIFDILKHGKEEPTVAEAQAVTEKEL 799
Query: 281 ED---YTDRYNAAIEDFISKLPGMA 302
+D +D+YN A +DF+ LPG+
Sbjct: 800 QDSGKSSDKYNPAPQDFLLHLPGVG 824
>gi|427788705|gb|JAA59804.1| Putative structure-specific endonuclease ercc1-xpf catalytic
component xpf/ercc4 [Rhipicephalus pulchellus]
Length = 860
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 201/325 (61%), Gaps = 55/325 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L S++P +I Y+ ++A +R++E+YQ +++ ++V+F+ Y +S++EQ YL+ LRR
Sbjct: 501 LQQLLHSVEPKYIILYDVNIATVREIEMYQATRAKEVLRVYFLMYEDSIDEQRYLTSLRR 560
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGV-------------STEPEES------------CGRV 100
EK AFE+LI+EK+ M +P EQDG S EP S RV
Sbjct: 561 EKDAFEFLIREKSIMVIPDEQDGKGEYHPDLIDDLGKSNEPASSRKAGGAVVPVSTSRRV 620
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVD+REFRSELP L+H+RG+ ++PVTI VGDYIL+P+ICVERKS++DLIGSL +GRLY Q
Sbjct: 621 IVDLREFRSELPSLIHRRGINVQPVTIEVGDYILTPEICVERKSLNDLIGSLNNGRLYNQ 680
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
Q MCR+Y +P+LLIEF+ N+PF LQG + S +
Sbjct: 681 AQAMCRYYKRPVLLIEFNQNQPFCLQGKHVPSSE-------------------------- 714
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
+ S +KL LLT+HFP+LRL+W PY TA++F LK G++EP+ A ++ +
Sbjct: 715 -STSSQTFVSKLILLTMHFPRLRLLWCQSPYATAEIFDILKHGKEEPTVAEAQAVTEKEL 773
Query: 281 ED---YTDRYNAAIEDFISKLPGMA 302
+D +D+YN A +DF+ LPG+
Sbjct: 774 QDSGKSSDKYNPAPQDFLLHLPGVG 798
>gi|226374630|gb|ACO52467.1| DNA repair endonuclease XPF [Liza aurata]
Length = 897
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/325 (44%), Positives = 197/325 (60%), Gaps = 54/325 (16%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ L
Sbjct: 543 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKANRPGKALRVYFLIYGGSTEEQKYLTAL 602
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCG--------R 99
+EKKAFE+LI+EK M +P E++G +T ++ G R
Sbjct: 603 SKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANATTNSHKAGGQEQPKEPSR 662
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVDMREFRSELP LLH+RGL IEPVT+ VGDYIL+PD CVERKS+SDLIGSLQSGRLYT
Sbjct: 663 VIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLYT 722
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y KP+LLIEFD KPF L +I+
Sbjct: 723 QCLSMTRYYRKPVLLIEFDPAKPFSLMARSDFRHEIS----------------------- 759
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQGR EP A A ++
Sbjct: 760 -----SNDISSKLTLLTLHFPRLRILWCPSPHATAELFLELKQGRLEPDASAAQAVTAES 814
Query: 280 NE--DYTDRYNAAIEDFISKLPGMA 302
+ + D YN DF+ K+PG++
Sbjct: 815 DTVAESADLYNPGPYDFLLKMPGVS 839
>gi|326928825|ref|XP_003210574.1| PREDICTED: DNA repair endonuclease XPF-like [Meleagris gallopavo]
Length = 856
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/321 (45%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P VI Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 506 LTRVLHEVEPRYVILYDAELTFVRQLEIYKASRPGKPLRVYFLIYGSSTEEQRYLTALRK 565
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+E+ +M VP E++G ST+ ++ G+ +I
Sbjct: 566 EKEAFEKLIRERASMVVPEEREGRDETNLDLVRDVKPASASTDTRQAGGQAQKTAQQTII 625
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKSISDLIGSL +GRLYTQ
Sbjct: 626 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSISDLIGSLNNGRLYTQC 685
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD NKPF L L ++I+
Sbjct: 686 ISMSRYYKRPILLIEFDPNKPFSLIPQGSLRQEIS------------------------- 720
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+T+KL LLTLHFPKLR++W P+ TA+LF ELKQ R +P AE A ++ +
Sbjct: 721 ---SSDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNRPQPDAEAAMAVTADSET 777
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+D+YN +DF+ K+PG+
Sbjct: 778 LPESDKYNPGPQDFLLKMPGV 798
>gi|291223405|ref|XP_002731700.1| PREDICTED: Ercc4 protein-like [Saccoglossus kowalevskii]
Length = 846
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 229/417 (54%), Gaps = 103/417 (24%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P VI Y+AD+ +RQ+EVY+ + ++V+F+ Y S EEQ YL+ LR+E A
Sbjct: 492 LKELQPRYVILYDADIQLVRQLEVYKACRPGEPLRVYFLVYSGSTEEQQYLTSLRKESNA 551
Query: 70 FEYLIQEKTNMAVP-------------TEQDGVST------EPEESCGRVIVDMREFRSE 110
FE+LI+EK + +P + GVS+ + E S +++VD+REFRSE
Sbjct: 552 FEHLIKEKATLVIPEDINDMADIRSEVSSTSGVSSRKAGGQDKEPSKQKILVDLREFRSE 611
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP L+HKRG+ IEP+T+ VGDYIL+PD+CVERKS+SDLIGSL SGRLY Q M R+YAK
Sbjct: 612 LPSLIHKRGIEIEPITLEVGDYILTPDMCVERKSLSDLIGSLNSGRLYNQCTSMSRYYAK 671
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
P+LLIEFD NK F LQ L +I+ + ++++
Sbjct: 672 PILLIEFDPNKSFALQPKTALGSEISIQ----------------------------NVSS 703
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAA 290
KL LLTLHFPKLR+ W P+ TA+LF E+K G+++P + VA +I +E +D+YN +
Sbjct: 704 KLTLLTLHFPKLRIFWCPSPHATAELFEEIKIGKEQPDSAVAMTITGDESE-ISDKYNYS 762
Query: 291 IEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRES 350
DF+ KLPG+ + +++++L ++K
Sbjct: 763 TYDFVIKLPGI-----------------------------NSKNYWMILNKVK------- 786
Query: 351 NPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTRPEVSS 407
+L L LS++ELC L++N+ G AL++ LH + V S
Sbjct: 787 -------------------NLTELIGLSQEELCKLLDNSNNGKALWEFLHHKHGVES 824
>gi|170036204|ref|XP_001845955.1| mei-9 [Culex quinquefasciatus]
gi|167878753|gb|EDS42136.1| mei-9 [Culex quinquefasciatus]
Length = 955
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 196/328 (59%), Gaps = 64/328 (19%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV---KVKVFFMQYGESVEEQAYLSD 62
L L +KP ++ Y+++V AIRQ+EV++ Q +V+VF + + ++VEEQ+YL+
Sbjct: 588 LDRTLEEIKPRYIVMYHSNVTAIRQIEVFEARQQRTELTRVRVFVIIHSKTVEEQSYLTS 647
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEP------------EESCG-----------R 99
LRREK+AFE LI K M VP QDG S + ++ G R
Sbjct: 648 LRREKQAFELLIDTKRTMVVPEYQDGKSEDAITMLQKAQEVSSRQAGGQAADEQLPVTPR 707
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+IVDMREFRS+LP L+H+RG+ + +GDYILSP+ICVERKSISDLIGSL SGRLY
Sbjct: 708 IIVDMREFRSDLPCLIHRRGIEV------IGDYILSPEICVERKSISDLIGSLNSGRLYN 761
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q QM R YAKP+LLIEFD NKPF LQ N+ +S
Sbjct: 762 QCVQMTRFYAKPMLLIEFDQNKPF--------------------------HLQRNFVVSG 795
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ-- 277
D + ++DI KLQLLT+HFPKL+L+WS PY TAQLF ELKQG+ EP +VA+ +G
Sbjct: 796 DAGSSNADIMQKLQLLTMHFPKLKLVWSPSPYATAQLFEELKQGKLEPDPDVAALVGSDE 855
Query: 278 ----TPNEDYTDRYNAAIEDFISKLPGM 301
+ E+ + N I DF+ KLPG+
Sbjct: 856 AGGPSEMENIAESSNPNIHDFLIKLPGI 883
>gi|405950197|gb|EKC18198.1| DNA repair endonuclease XPF [Crassostrea gigas]
Length = 869
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 225/427 (52%), Gaps = 110/427 (25%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L+ ++P V+ Y+ D+ +R++EVY+ ++ ++V+FM Y SVEEQ YL+ LR
Sbjct: 509 LTKTLQEVQPRYVVLYDVDMQFVRELEVYRASRPRSPLRVYFMMYTGSVEEQRYLTTLRM 568
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCG----------------------RVIV 102
EK+AFEYLI+EK M +P E++G S +P S G RVIV
Sbjct: 569 EKEAFEYLIKEKATMVIPEEREGKSEDDPNLSRGTLPANATVNTRKGGGPVVPVEQRVIV 628
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREF SELP L+HKRG+ IEP+T+ VGDYILSPDICVERKS+SDLIGSL +GRLY Q
Sbjct: 629 DMREFGSELPSLIHKRGIEIEPITLEVGDYILSPDICVERKSVSDLIGSLNNGRLYNQCV 688
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
MCR+Y KP+LLIEFD NK F LQ + +
Sbjct: 689 SMCRYYKKPVLLIEFDA--------------------------NKSFSLQ----VKQSSE 718
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
D+T++L LLTLHFPKLR++W PY TA+LF ELK G+ +P A A ++G + D
Sbjct: 719 VSIQDVTSRLALLTLHFPKLRILWCQSPYATAELFEELKAGKPQPDAATALAVGTSEGGD 778
Query: 283 --YTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLF 340
++D+Y+ +DF+ K+PG+ A ++ L++
Sbjct: 779 LEWSDKYSHGPQDFLLKMPGV-----------------------------NAKNYRLIM- 808
Query: 341 RIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALH 400
NR SL ALC S ++L ++ + L+ LH
Sbjct: 809 -------------------------NRVESLSALCDCSLEQLTEIMGSQPHAKQLHDFLH 843
Query: 401 TRPEVSS 407
T+P S+
Sbjct: 844 TKPAEST 850
>gi|410895825|ref|XP_003961400.1| PREDICTED: DNA repair endonuclease XPF-like [Takifugu rubripes]
Length = 896
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 195/324 (60%), Gaps = 54/324 (16%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ L
Sbjct: 542 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQKYLTAL 601
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCG--------R 99
+EKKAFE+LI+EK M +P E++G +T ++ G R
Sbjct: 602 SKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNMESANATTNSRKAGGQEQPKEPSR 661
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVDMREFRSELP LLH+RGL IEPVT+ VGDYILSPD CVERKS+SDLIGSLQSGRLYT
Sbjct: 662 VIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILSPDTCVERKSVSDLIGSLQSGRLYT 721
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y KP+LLIEFD KPF L +F H
Sbjct: 722 QCLSMTRYYRKPVLLIEFDPTKPFSLMAR------------TDFHHE------------- 756
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
S+DI++KL LLTLHFP+LR++W P+ TA LF +LK+GR EP A A ++
Sbjct: 757 ---ISSNDISSKLTLLTLHFPRLRILWCPSPHATADLFLDLKKGRPEPDATAAQAVTAES 813
Query: 280 NE--DYTDRYNAAIEDFISKLPGM 301
+ + D YN DF+ K+PG+
Sbjct: 814 DTVAESADIYNPGPYDFLLKMPGV 837
>gi|224070062|ref|XP_002195540.1| PREDICTED: DNA repair endonuclease XPF [Taeniopygia guttata]
Length = 902
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 203/323 (62%), Gaps = 57/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L+ ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 552 LTRVLQEVEPRYVVLYDAELTFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQRYLTTLRK 611
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VS + ++ G+ +I
Sbjct: 612 EKEAFEKLIREKASMVVPEEREGRDETNLDLLRDARPASVSADTRKAGGQEQKGVQQTII 671
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKSISDLIGSL +GRLY Q
Sbjct: 672 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSISDLIGSLNNGRLYAQC 731
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
MCR+Y +P+LLIEFD NKPF L L +I+
Sbjct: 732 VSMCRYYKRPVLLIEFDPNKPFSLIPRGSLQPEIS------------------------- 766
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
S+D+T+KL LLTLHFPKLR++W P+ TA+LF ELKQ +P AE A S+ T +
Sbjct: 767 ---SNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAETAMSV--TADS 821
Query: 282 DY---TDRYNAAIEDFISKLPGM 301
+ +D+YN +DF+ K+PG+
Sbjct: 822 EILPESDKYNPGPQDFLLKMPGV 844
>gi|340373257|ref|XP_003385158.1| PREDICTED: DNA repair endonuclease XPF-like [Amphimedon
queenslandica]
Length = 917
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/436 (36%), Positives = 226/436 (51%), Gaps = 119/436 (27%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L S KP+ VI Y+AD+ RQ+E+++ + E+ +KV+F+ Y SVEEQ YL ++REK+A
Sbjct: 555 LHSFKPSVVILYDADIKLTRQIEIFKATRREIPLKVYFLVYDSSVEEQMYLDSIKREKQA 614
Query: 70 FEYLIQEKTNMAVPTEQDGV----------------------------STEPEESCGRVI 101
F+ LIQ+K +M +P +++G +T+ EE+ VI
Sbjct: 615 FQQLIQQKAHMVIPADREGRGTGNTLLQRGSGRGEENGKSTSTRKAGGATKQEETRPIVI 674
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRS LP ++HKRG+ I P+TI VGDYIL+PDIC+ERKS+SDLIGSL SGRLY QV
Sbjct: 675 VDMREFRSSLPSMIHKRGIDIIPLTIEVGDYILTPDICIERKSVSDLIGSLNSGRLYNQV 734
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
+ M +HY KP+LLIEF+ KPF LQ +S D++
Sbjct: 735 KAMTQHYQKPILLIEFEEGKPFSLQSIVAVSSDVS------------------------- 769
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG---QT 278
S ++ +KL LLT+HFPKLR++W P+ A+LF ELK G+ +P A++IG
Sbjct: 770 ---SQNVASKLVLLTIHFPKLRILWCPTPHFAAELFEELKAGQAQPDPSTAATIGGEVME 826
Query: 279 PNEDYTDR-----YNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRAS 333
ED T + YN++IE+F+ KLPG+ NF
Sbjct: 827 TREDVTIKEKKPTYNSSIENFLLKLPGV----------------------NF-------- 856
Query: 334 SFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGN 393
KN ++N + L LSE+ L ++ N T
Sbjct: 857 -------------------------KNYRYIMNEVKDMQELVSLSEKGLEKILGNDTNAQ 891
Query: 394 ALYKALHTRPEVSSGS 409
L+ ALHT+ ++ S
Sbjct: 892 LLWNALHTKQSLTHSS 907
>gi|301612013|ref|XP_002935520.1| PREDICTED: DNA repair endonuclease XPF [Xenopus (Silurana)
tropicalis]
Length = 875
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 202/321 (62%), Gaps = 54/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+++++ +RQ+E+Y+ A + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 526 LTRVLHEIEPRYVVLYDSELSFVRQLEIYR-ASKQKPLRVYFLIYGGSTEEQRYLTSLRK 584
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGV----------------STEPEESCGRV--------I 101
EK+AFE LI+EK +M +P E+DG S + ++ G+V I
Sbjct: 585 EKEAFEQLIREKASMVIPEERDGRDDTNLDLQRDVTSTFDSADTRKAGGQVQNNVQQTII 644
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKS+SDLIGSL +GRLYTQ
Sbjct: 645 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSVSDLIGSLNNGRLYTQC 704
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
MCR+Y +P+LLIEFD NKPF L + ++I+
Sbjct: 705 VSMCRYYKRPVLLIEFDPNKPFSLVSKNSIHQEISV------------------------ 740
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
+DIT+K+ LLTLHFP+LR++W PY TA+LF ELKQ R +P + A +I + +
Sbjct: 741 ----NDITSKIALLTLHFPRLRILWCPSPYATAELFEELKQNRPQPDSATAMAITADSES 796
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 797 LPESEKYNPGPQDFLLKMPGV 817
>gi|47226113|emb|CAG04487.1| unnamed protein product [Tetraodon nigroviridis]
Length = 895
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 193/335 (57%), Gaps = 65/335 (19%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ L
Sbjct: 543 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQKYLTSL 602
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGV---------------STEPEESCG---------- 98
+EKKAFE+LI+EK M +P E++G +T G
Sbjct: 603 SKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNMESANATTNSRKAGTLLLFQYDCF 662
Query: 99 ----------RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDL 148
RVIVDMREFRSELP LLH+RGL IEPVT+ VGDYILSPD CVERKS+SDL
Sbjct: 663 RGQDQPREPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILSPDTCVERKSVSDL 722
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKP 208
IGSLQSGRLYTQ M R+Y KP+LLIEFD KPF L +I+
Sbjct: 723 IGSLQSGRLYTQCLSMTRYYRKPVLLIEFDPAKPFSLMARTDFRHEIS------------ 770
Query: 209 FELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS 268
S+DI++KL LLTLHFP+LR++W P+ TA LF +LKQGR EP
Sbjct: 771 ----------------SNDISSKLTLLTLHFPRLRILWCPSPHATADLFLDLKQGRPEPD 814
Query: 269 AEVASSIGQTPNE--DYTDRYNAAIEDFISKLPGM 301
A A ++ + + D YN DF+ K+PG+
Sbjct: 815 ATAAQAVTAESDTVAESADLYNPGPYDFLLKMPGV 849
>gi|147900181|ref|NP_001086576.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Xenopus laevis]
gi|49903420|gb|AAH76828.1| Ercc4-prov protein [Xenopus laevis]
Length = 897
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 203/323 (62%), Gaps = 58/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+++V+ +RQ+E+Y+ A + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 548 LTRVLHEIEPRYVVLYDSEVSFVRQLEIYR-ASKQKPLRVYFLIYGGSTEEQRYLTSLRK 606
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGV----------------STEPEESCGRV--------I 101
EK+AFE LI+EK +M +P E+DG S + ++ G+V I
Sbjct: 607 EKEAFEKLIREKASMVIPEERDGRDETNLDLQRDVTSTSDSADTRKAGGQVQNNVQQTII 666
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKS+SDLIGSL +GRLYTQ
Sbjct: 667 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSVSDLIGSLNNGRLYTQC 726
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
MCR+Y KP+LLIEFD NKPF L + ++I+
Sbjct: 727 VSMCRYYKKPILLIEFDPNKPFSLVSRNSIHQEISV------------------------ 762
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
+DIT+K+ LLTLHFP+LR++W P++TA+LF ELKQ R +P + A +I T N
Sbjct: 763 ----NDITSKISLLTLHFPRLRILWCPSPHSTAELFEELKQNRPQPDSATAMAI--TANS 816
Query: 282 DY---TDRYNAAIEDFISKLPGM 301
+ +++YN +D + K+PG+
Sbjct: 817 ESIPESEKYNPGPQDVLLKMPGV 839
>gi|41054253|ref|NP_956079.1| DNA repair endonuclease XPF [Danio rerio]
gi|32766570|gb|AAH54895.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Danio rerio]
Length = 886
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/323 (45%), Positives = 194/323 (60%), Gaps = 56/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L + P V+ Y+A+++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ L +
Sbjct: 537 LTRVLHEVDPMFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQRYLTALNK 596
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGV---------STEPEESCG---------------RVI 101
EK+AFE+LI+EK +M VP E++G S EP + R+I
Sbjct: 597 EKQAFEHLIREKASMVVPEEREGREDTNLDLVRSQEPASAATNTRKAGGLEEVKEPHRII 656
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP LLH+RGL IEPVT+ VGDYIL+ DICVERKS+SDLIGSLQSGRLYTQ
Sbjct: 657 VDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTSDICVERKSVSDLIGSLQSGRLYTQC 716
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R Y +P+LLIEFD KPF L ++I+A
Sbjct: 717 LSMTRFYRRPVLLIEFDPAKPFSLVARSDFRQEISA------------------------ 752
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI---GQT 278
+D+T+KL LLTLHFP+LRL+W PY TA+LF ELK GR EP A A ++ +T
Sbjct: 753 ----NDVTSKLTLLTLHFPRLRLLWCPSPYVTAELFQELKHGRTEPDASTAQAVTAESET 808
Query: 279 PNEDYTDRYNAAIEDFISKLPGM 301
E D YN DF+ ++PG+
Sbjct: 809 VTES-ADLYNPGPYDFLLRMPGV 830
>gi|348502403|ref|XP_003438757.1| PREDICTED: DNA repair endonuclease XPF-like [Oreochromis niloticus]
Length = 899
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 64/329 (19%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ + +++V+F+ YG S EEQ YL+ L
Sbjct: 545 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKANRPGKQLRVYFLIYGGSTEEQKYLTAL 604
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCG--------R 99
+EKKAFE+LI+EK M +P E++G +T ++ G R
Sbjct: 605 SKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLDPANATTNTRKAGGQEQPTEPSR 664
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVDMREFRSELP LLH+RGL IEPVT+ VGDYIL+PD CVERKS+SDLIGSLQSGRLYT
Sbjct: 665 VIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLYT 724
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y KP+LLIEFD KPF L +I+
Sbjct: 725 QCLSMTRYYKKPVLLIEFDPAKPFSLMARSDFRHEIS----------------------- 761
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEV-------A 272
S+D+++KL LLTLHFP+LR++W P+ TA+LF ELK+G+ EP A +
Sbjct: 762 -----SNDVSSKLTLLTLHFPRLRILWCPSPHATAELFLELKRGQPEPDAAAAQAVTAES 816
Query: 273 SSIGQTPNEDYTDRYNAAIEDFISKLPGM 301
++G++ D YN DF+ K+PG+
Sbjct: 817 DTVGES-----ADLYNPGPYDFLMKMPGV 840
>gi|395515087|ref|XP_003761738.1| PREDICTED: DNA repair endonuclease XPF [Sarcophilus harrisii]
Length = 896
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 201/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 546 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPMRVYFLIYGGSTEEQRYLTALRK 605
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M +P E++G ST+ ++ G+ +I
Sbjct: 606 EKEAFEKLIREKASMVIPEEREGRDETNLDLVREATSTYASTDTRKAGGQEKTNLQQSII 665
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP LLH+RG+ IEP+T+ VGDYIL+P+ICVERKSISDLIGSL +GRLY+Q
Sbjct: 666 VDMREFRSELPSLLHRRGIDIEPITLEVGDYILTPEICVERKSISDLIGSLNNGRLYSQC 725
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 726 ISMSRYYKRPVLLIEFDPSKPFSLTSRGSLHQEIS------------------------- 760
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFPKLR++W P+ TA+LF ELKQ R +P A A +I T
Sbjct: 761 ---SNDISSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNRPQPDATTAMAITADTET 817
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 818 LPDSEKYNPGPQDFLLKMPGV 838
>gi|449277435|gb|EMC85600.1| DNA repair endonuclease XPF, partial [Columba livia]
Length = 848
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 201/324 (62%), Gaps = 58/324 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK-VFFMQYGESVEEQAYLSDLR 64
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG S EEQ YL+ LR
Sbjct: 497 LTRVLHEVEPRYVVLYDAELTFVRQLEIYKASRPGKPLRQVYFLIYGGSTEEQRYLTALR 556
Query: 65 REKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------V 100
+EK+AFE LI+EK M +P E++G + + ++ G+ V
Sbjct: 557 KEKEAFEKLIREKAGMVIPEEREGRDETNLDLTRDAKPASAAADTRKAGGQEQKGVQQTV 616
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKSISDLIGSL +GRLYTQ
Sbjct: 617 IVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSISDLIGSLNNGRLYTQ 676
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
M R+Y +P+LLIEFD NKPF L L ++I+
Sbjct: 677 CVSMSRYYKRPILLIEFDPNKPFSLIPRGSLHQEIS------------------------ 712
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
S+DIT+KL LLTLHFPKLR++W P+ TA+LF ELKQ +P AE A +I T +
Sbjct: 713 ----SNDITSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAETAMAI--TAD 766
Query: 281 EDY---TDRYNAAIEDFISKLPGM 301
+ +D+YN +DF+ K+PG+
Sbjct: 767 SEVLPESDKYNPGPQDFLLKMPGV 790
>gi|443686899|gb|ELT90017.1| hypothetical protein CAPTEDRAFT_178005 [Capitella teleta]
Length = 891
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/327 (45%), Positives = 199/327 (60%), Gaps = 53/327 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+PT VI Y+ADV +RQ+EV++ + + ++V+F+ Y S EEQ YL+ LRREK+A
Sbjct: 525 LEELQPTYVILYDADVTFVRQLEVFRASHPDKPLRVYFLMYKGSTEEQRYLTSLRREKEA 584
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE----------------------PEES--CGRVIVDMR 105
FEYLI+ K M +P E++G + PEE ++IVDMR
Sbjct: 585 FEYLIRSKATMVIPEEREGRIEDDPNLSRDTTHANATVDSRKGGGPEEKPQQQKIIVDMR 644
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRSELP L+H+RG+ IEPVTISVGDYIL+P ICVERKS+SDLIGSL +GRLY Q MC
Sbjct: 645 EFRSELPSLIHRRGIDIEPVTISVGDYILTPQICVERKSLSDLIGSLNNGRLYNQCVSMC 704
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
R+Y +P+LLIEFD NK F LQG Y +S +I S
Sbjct: 705 RYYERPVLLIEFDP--------------------------NKSFALQGKYTVSSEI--NS 736
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYT 284
SD T++L LLTLHFP+LR++W GPY TA+LF +LK GR++P A S G +E
Sbjct: 737 SDTTSRLTLLTLHFPRLRVLWCQGPYATAELFHKLKVGREQPDTSKAMSFTGDGESELAI 796
Query: 285 DRYNAAIEDFISKLPGMAEWSRARTLN 311
+YN + + + K+PG+ + R LN
Sbjct: 797 GKYNISAQTMLLKMPGITTKNVHRLLN 823
>gi|67971340|dbj|BAE02012.1| unnamed protein product [Macaca fascicularis]
Length = 582
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 232 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 291
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ V+
Sbjct: 292 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQSVV 351
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 352 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 411
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 412 VSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS------------------------- 446
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 447 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 503
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YNA +DF+ K+PG+
Sbjct: 504 LPESEKYNAGPQDFLLKMPGV 524
>gi|327287573|ref|XP_003228503.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF-like
[Anolis carolinensis]
Length = 847
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 198/326 (60%), Gaps = 61/326 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 497 LTRILHEVEPRYVVLYDAELTFVRQLEIYKASRPGIPLRVYFLIYGGSTEEQRYLTTLRK 556
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPEESC---GR----------------------- 99
EK+AFE LI+EK NM +P E++G +E+C GR
Sbjct: 557 EKEAFEKLIREKANMGIPEEREG----RDETCLDLGRDATPASLTKDTRKAGGQRQENVQ 612
Query: 100 --VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
++VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKSISDLIGSL +GRL
Sbjct: 613 QSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSISDLIGSLNNGRL 672
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL 217
Y+Q M R+Y P LLIEFD NK F L L ++I+
Sbjct: 673 YSQCVSMSRYYKCPALLIEFDPNKSFCLTPRASLYQEIS--------------------- 711
Query: 218 SRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-G 276
SSDI +KL LLTLHFP+LRL+W P+ TA+LF ELKQ R +P + A +I
Sbjct: 712 -------SSDIASKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNRPQPESATAMAITA 764
Query: 277 QTPNEDYTDRYNAAIEDFISKLPGMA 302
+ D+YN+ +DF+ KLPG++
Sbjct: 765 DSETLPELDKYNSGPQDFLLKLPGVS 790
>gi|226374628|gb|ACO52466.1| DNA repair endonuclease XPF [Dicentrarchus labrax]
Length = 899
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 195/324 (60%), Gaps = 54/324 (16%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ L
Sbjct: 543 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQKYLTAL 602
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCG--------R 99
+EKKAFE+LI+EK M +P E++G +T ++ G R
Sbjct: 603 SKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANATTNTRKAGGQEQAKEPSR 662
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVDMREFRSELP LLH+RGL IEPVT+ VGDYIL+PD CVERKS+S LIGSLQSGRLYT
Sbjct: 663 VIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSGLIGSLQSGRLYT 722
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y KP+LLIEFD KPF L +I+
Sbjct: 723 QCLSMTRYYKKPVLLIEFDPQKPFSLMARSDFRHEIS----------------------- 759
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
S+DI++KL LLTLHFP+LR++W P+ TA LF +LKQGR EP A A ++
Sbjct: 760 -----SNDISSKLTLLTLHFPRLRILWCPSPHATADLFLDLKQGRFEPDAAAAQAVTAES 814
Query: 280 N--EDYTDRYNAAIEDFISKLPGM 301
+ + D YN DF+ K+PG+
Sbjct: 815 DMVAESADLYNPGPYDFLLKMPGV 838
>gi|109127649|ref|XP_001107209.1| PREDICTED: DNA repair endonuclease XPF isoform 3 [Macaca mulatta]
Length = 916
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ V+
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQSVV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 VSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YNA +DF+ K+PG+
Sbjct: 838 LPESEKYNAGPQDFLLKMPGV 858
>gi|402907722|ref|XP_003916616.1| PREDICTED: DNA repair endonuclease XPF [Papio anubis]
Length = 916
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ V+
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQSVV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 VSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YNA +DF+ K+PG+
Sbjct: 838 LPESEKYNAGPQDFLLKMPGV 858
>gi|380796517|gb|AFE70134.1| DNA repair endonuclease XPF, partial [Macaca mulatta]
Length = 881
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 531 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 590
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ V+
Sbjct: 591 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQSVV 650
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 651 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 710
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 711 VSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS------------------------- 745
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 746 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 802
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YNA +DF+ K+PG+
Sbjct: 803 LPESEKYNAGPQDFLLKMPGV 823
>gi|395860979|ref|XP_003802775.1| PREDICTED: DNA repair endonuclease XPF [Otolemur garnettii]
Length = 916
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 200/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G V T+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGAASTSVPTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYNQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALYQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSDI++KL LLTLHFPKLR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SSDISSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+D+YN +DF+ K+PG+
Sbjct: 838 LPESDKYNPGPQDFLLKMPGV 858
>gi|432921487|ref|XP_004080174.1| PREDICTED: DNA repair endonuclease XPF-like [Oryzias latipes]
Length = 889
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 194/333 (58%), Gaps = 72/333 (21%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+EVY+ + ++V+F+ YG S EEQ YL+ L
Sbjct: 535 HSLTRVLHEVEPSFVVLYDAELSFVRQLEVYKAMRPGKPLRVYFLIYGGSTEEQKYLTAL 594
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCG--------R 99
+EKKAFE+LI+EK M VP E++G +T ++ G R
Sbjct: 595 SKEKKAFEHLIREKATMVVPEEREGREDTNLDLARNLEPANATTNTHKAGGQEQRSEPSR 654
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVDMREFRSELP LLH+RGL IEPVT+ VGDYIL+PD CVERKS+SDLIGSLQSGRLY+
Sbjct: 655 VIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLYS 714
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y KP+LLIEFD KPF L +I+
Sbjct: 715 QCLSMTRYYRKPVLLIEFDPAKPFSLTARSDFRHEIS----------------------- 751
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP-----------S 268
S+D+++KL LLTLHFP+LR++W P+ TA+LF ELK+GR EP S
Sbjct: 752 -----SNDVSSKLTLLTLHFPRLRILWCPSPHATAELFLELKRGRPEPDAAAALAVTAES 806
Query: 269 AEVASSIGQTPNEDYTDRYNAAIEDFISKLPGM 301
VA S G YN DF+ K+PG+
Sbjct: 807 DTVAESAGL---------YNPGPYDFLLKMPGV 830
>gi|332023478|gb|EGI63721.1| DNA repair endonuclease XPF [Acromyrmex echinatior]
Length = 915
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/321 (46%), Positives = 192/321 (59%), Gaps = 54/321 (16%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P ++I Y D+ +RQ+E+YQ + +K + E+Q SD + I
Sbjct: 592 PNNIILYANDIGIVRQLEIYQNNNPSLDLKTMVVP-----EDQDGKSD-----DCLAFAI 641
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134
Q T + G +E + +VIVDMREFRSELP +L+ RG+ IEPVT+ VGDYIL
Sbjct: 642 QSDDANQEDTRKGGKQSEVK-IIPKVIVDMREFRSELPAILYTRGIKIEPVTLVVGDYIL 700
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRD 194
+P+IC+ERKSISDLIGSL SGRLY Q M RHYAKP+LLIEFD NKPF QGNYY+S+D
Sbjct: 701 TPEICIERKSISDLIGSLLSGRLYNQAVSMTRHYAKPMLLIEFDQNKPFCFQGNYYVSKD 760
Query: 195 IAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTA 254
+ KS+DI AKLQLLTLHFPKL+++WS P+ TA
Sbjct: 761 L----------------------------KSNDIMAKLQLLTLHFPKLKIVWSPSPHATA 792
Query: 255 QLFFELKQGRDEPSAEVASSIGQTPNEDY------TDRYNAAIEDFISKLPGMAEWSRAR 308
QLF ELKQGRD+P + VA+ IG +ED ++YN I+DFI KLPG+
Sbjct: 793 QLFEELKQGRDQPDSNVAAKIG--ADEDIENKQILVEKYNPHIQDFIGKLPGV------H 844
Query: 309 TLNLEVLGLNPGQGGNFLTEL 329
+ NL VL LN G+ + L +L
Sbjct: 845 SKNLRVL-LNKGKSLDHLIKL 864
>gi|6063149|gb|AAF03157.1|AF189285_1 DNA repair endonuclease XPF [Mus musculus]
Length = 917
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 212/356 (59%), Gaps = 65/356 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSIV 686
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 687 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 746
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++++
Sbjct: 747 LAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMS------------------------- 781
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 782 ---SSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 838
Query: 281 EDYTDRYNAAIEDFISKLPGM-AEWSRA-----------RTLNLEVLGLNPGQGGN 324
+DRYN +DF+ K+PG+ A+ R+ TL+LE L G GN
Sbjct: 839 LPESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGN 894
>gi|241666402|ref|NP_056584.2| DNA repair endonuclease XPF [Mus musculus]
gi|229463019|sp|Q9QZD4.3|XPF_MOUSE RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA
excision repair protein ERCC-4
gi|2896801|gb|AAC03240.1| ERCC4_MOUSE [Mus musculus]
gi|148664944|gb|EDK97360.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Mus musculus]
Length = 917
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 212/356 (59%), Gaps = 65/356 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSIV 686
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 687 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 746
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L +G ++
Sbjct: 747 LAMSRYYRRPVLLIEFDPSKPFSLAP------------------------RGAFFQE--- 779
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 780 -MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 838
Query: 281 EDYTDRYNAAIEDFISKLPGM-AEWSRA-----------RTLNLEVLGLNPGQGGN 324
+DRYN +DF+ K+PG+ A+ R+ TL+LE L G GN
Sbjct: 839 LPESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGN 894
>gi|20073215|gb|AAH26792.1| Ercc4 protein [Mus musculus]
Length = 906
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 212/356 (59%), Gaps = 65/356 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 556 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 615
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 616 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSIV 675
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 676 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 735
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L +G ++
Sbjct: 736 LAMSRYYRRPVLLIEFDPSKPFSLAP------------------------RGAFFQE--- 768
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 769 -MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 827
Query: 281 EDYTDRYNAAIEDFISKLPGM-AEWSRA-----------RTLNLEVLGLNPGQGGN 324
+DRYN +DF+ K+PG+ A+ R+ TL+LE L G GN
Sbjct: 828 LPESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGN 883
>gi|194377974|dbj|BAG63350.1| unnamed protein product [Homo sapiens]
Length = 466
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 116 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 175
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 176 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 235
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 236 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 295
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 296 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 330
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 331 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 387
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 388 LPESEKYNPGPQDFLLKMPGV 408
>gi|392342769|ref|XP_003754693.1| PREDICTED: DNA repair endonuclease XPF-like, partial [Rattus
norvegicus]
Length = 512
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 198/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ LR+
Sbjct: 162 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALRK 221
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 222 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQERNGTQPSIV 281
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 282 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 341
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++++
Sbjct: 342 LAMSRYYRRPVLLIEFDPSKPFSLAPRGAFVQEMS------------------------- 376
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 377 ---SSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 433
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+DRYN +DF+ K+PG+
Sbjct: 434 LPESDRYNPGPQDFVLKMPGV 454
>gi|348584104|ref|XP_003477812.1| PREDICTED: DNA repair endonuclease XPF-like [Cavia porcellus]
Length = 916
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 200/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G + + ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTASTQAAADTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD NKPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPNKPFSLTARGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSDI++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SSDISSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSEA 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|380020346|ref|XP_003694048.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF-like
[Apis florea]
Length = 977
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 197/327 (60%), Gaps = 47/327 (14%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P+++I Y AD++AIRQ+EVYQ + +K + + + + LS I
Sbjct: 652 PSNIIMYVADLSAIRQIEVYQNNNPSIDLKTMVIPEDQDGKTEDCLS----------LAI 701
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134
Q + + T + G+ + E VIVDMREFRSELP +L+ RG+ IEPVT+ VGDYIL
Sbjct: 702 QSDIDSEMNTRKGGLP-KISEVPNTVIVDMREFRSELPAILYTRGMKIEPVTLQVGDYIL 760
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRD 194
SPDICVERKS+SDLIGSL SGRLY Q M RHY KP+LLIEFD
Sbjct: 761 SPDICVERKSVSDLIGSLNSGRLYNQAIAMTRHYNKPMLLIEFDP--------------- 805
Query: 195 IAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTA 254
NKPF QG YY S+D+ ++ IT+KLQLLTLHFP+L+L+WS GP+ TA
Sbjct: 806 -----------NKPFCFQGYYYASKDV--QNMFITSKLQLLTLHFPRLKLVWSPGPHATA 852
Query: 255 QLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYNAAIEDFISKLPGMAEWSRARTLNLE 313
QLF ELKQGRD+P A+ IG N++ D+YN+ I+DF+SKLPG+ T NL
Sbjct: 853 QLFEELKQGRDQPDPIKAAQIGIEENKEIPVDKYNSRIQDFVSKLPGVT------TKNLH 906
Query: 314 VLGLNPGQGGNFLTELFRASSFFLLLF 340
++ LN GQ + L +L + + + +
Sbjct: 907 LI-LNKGQSLDHLNKLSKVXRIYXITW 932
>gi|426381294|ref|XP_004057285.1| PREDICTED: DNA repair endonuclease XPF [Gorilla gorilla gorilla]
Length = 867
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 517 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 576
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 577 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 636
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 637 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 696
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 697 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 731
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 732 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 788
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 789 LPESEKYNPGPQDFLLKMPGV 809
>gi|126334895|ref|XP_001375532.1| PREDICTED: DNA repair endonuclease XPF [Monodelphis domestica]
Length = 983
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 200/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 633 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPMRVYFLIYGGSTEEQRYLTALRK 692
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M +P E++G ST+ ++ G+ +I
Sbjct: 693 EKEAFEKLIREKASMVIPEEREGRDETNLDLVREAASTHASTDTRKAGGQEKINLQQSII 752
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P+ICVERKSISDLIGSL +GRLY+Q
Sbjct: 753 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEICVERKSISDLIGSLNNGRLYSQC 812
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 813 ISMSRYYKRPVLLIEFDPSKPFSLTSRGSLHQEIS------------------------- 847
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I
Sbjct: 848 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDATTAMAITADAET 904
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 905 LPDSEKYNPGPQDFLLKMPGV 925
>gi|403274034|ref|XP_003928795.1| PREDICTED: DNA repair endonuclease XPF [Saimiri boliviensis
boliviensis]
Length = 916
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGIASANVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|158260475|dbj|BAF82415.1| unnamed protein product [Homo sapiens]
Length = 916
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|114661075|ref|XP_510831.2| PREDICTED: DNA repair endonuclease XPF [Pan troglodytes]
gi|397525576|ref|XP_003832737.1| PREDICTED: DNA repair endonuclease XPF [Pan paniscus]
gi|410252030|gb|JAA13982.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Pan troglodytes]
gi|410336295|gb|JAA37094.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Pan troglodytes]
Length = 916
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|4885217|ref|NP_005227.1| DNA repair endonuclease XPF [Homo sapiens]
gi|229463004|sp|Q92889.3|XPF_HUMAN RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA
excision repair protein ERCC-4; AltName: Full=DNA repair
protein complementing XP-F cells; AltName:
Full=Xeroderma pigmentosum group F-complementing protein
gi|19550957|gb|AAL91593.1|AF491814_1 excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Homo sapiens]
gi|1905924|gb|AAB50174.1| DNA repair protein [Homo sapiens]
gi|119605523|gb|EAW85117.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4, isoform CRA_a [Homo sapiens]
gi|182887847|gb|AAI60102.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 4 [synthetic construct]
Length = 916
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|344292094|ref|XP_003417763.1| PREDICTED: DNA repair endonuclease XPF [Loxodonta africana]
Length = 916
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 201/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M +P E++G ST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVIPEEREGRDETNLDLARGSTSADASTDTRKAGGQEQSVTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP LLH+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLLHRRGIDIEPVTLEVGDYILTPEMCVERKSVSDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALYQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDATTAMAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|297698143|ref|XP_002826187.1| PREDICTED: DNA repair endonuclease XPF [Pongo abelii]
Length = 916
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 201/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYGQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|441659521|ref|XP_004091351.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF [Nomascus
leucogenys]
Length = 1168
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 200/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ E+Y+ ++ +V+F+ YG S EEQ YL+ LR+
Sbjct: 818 LTRVLHEVEPRYVVLYDAELTFVRQXEIYRASRPGKPCRVYFLIYGGSTEEQRYLTALRK 877
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 878 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQSIV 937
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 938 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 997
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 998 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 1032
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 1033 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSEA 1089
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 1090 LPESEKYNPGPQDFLLKMPGV 1110
>gi|355691568|gb|EHH26753.1| hypothetical protein EGK_16813 [Macaca mulatta]
Length = 919
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 203/324 (62%), Gaps = 56/324 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV---KVKVFFMQYGESVEEQAYLSD 62
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ +V V+F+ YG S EEQ YL+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVMVYFLIYGGSTEEQRYLTA 625
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR------- 99
LR+EK+AFE LI+EK +M VP E++G VST+ ++ G+
Sbjct: 626 LRKEKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQ 685
Query: 100 -VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
V+VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY
Sbjct: 686 SVVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLY 745
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
+Q M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 SQCVSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS---------------------- 783
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQ 277
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I
Sbjct: 784 ------SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITAD 837
Query: 278 TPNEDYTDRYNAAIEDFISKLPGM 301
+ +++YNA +DF+ K+PG+
Sbjct: 838 SETLPESEKYNAGPQDFLLKMPGV 861
>gi|355756568|gb|EHH60176.1| hypothetical protein EGM_11492 [Macaca fascicularis]
Length = 919
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 203/324 (62%), Gaps = 56/324 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV---KVKVFFMQYGESVEEQAYLSD 62
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ +V V+F+ YG S EEQ YL+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVMVYFLIYGGSTEEQRYLTA 625
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR------- 99
LR+EK+AFE LI+EK +M VP E++G VST+ ++ G+
Sbjct: 626 LRKEKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASTDVSTDTRKAGGQEQNGTQQ 685
Query: 100 -VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
V+VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY
Sbjct: 686 SVVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLY 745
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
+Q M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 SQCVSMSRYYKRPVLLIEFDPSKPFSLTARGALFQEIS---------------------- 783
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQ 277
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I
Sbjct: 784 ------SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITAD 837
Query: 278 TPNEDYTDRYNAAIEDFISKLPGM 301
+ +++YNA +DF+ K+PG+
Sbjct: 838 SETLPESEKYNAGPQDFLLKMPGV 861
>gi|390471320|ref|XP_002755959.2| PREDICTED: DNA repair endonuclease XPF [Callithrix jacchus]
Length = 905
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 201/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 555 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 614
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G ST+ ++ G+ ++
Sbjct: 615 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGIASANASTDTRKAGGQEQNGTQQSIV 674
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 675 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 734
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 735 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 769
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 770 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATALAITADSET 826
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 827 LPESEKYNPGPQDFLLKMPGV 847
>gi|1524411|gb|AAB07689.1| DNA repair endonuclease subunit [Homo sapiens]
Length = 905
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 201/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 555 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 614
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 615 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 674
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+R + IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 675 VDMREFRSELPSLIHRRDIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 734
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 735 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 769
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 770 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 826
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 827 LPESEKYNPGPQDFLLKMPGV 847
>gi|156378394|ref|XP_001631128.1| predicted protein [Nematostella vectensis]
gi|156218162|gb|EDO39065.1| predicted protein [Nematostella vectensis]
Length = 899
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 191/319 (59%), Gaps = 53/319 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L ++P V+ Y+AD+ +RQ+EV++ ++ + ++V+FM Y SVEEQ YL+ LR+
Sbjct: 542 LIHTLYEVEPKYVVLYDADIEFVRQLEVFKASRPGIPLRVYFMIYTGSVEEQKYLTTLRK 601
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG-------VSTEPEESCG------------------RV 100
EK+AFE LI+EK +M P EQ+G +S +P ++ +V
Sbjct: 602 EKEAFEKLIREKASMVTPEEQEGRSWAAMALSRDPSKATDAVNTRKAGGRQTESQAPRKV 661
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVDMREFRSELP L+H+RG+ IEPVT+ VGDYILSPD+CVERKS+ DLIGSL +GRLY+Q
Sbjct: 662 IVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILSPDMCVERKSVGDLIGSLNNGRLYSQ 721
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
M R+Y +P+LLIEFD NK F LQ LS +I+ +
Sbjct: 722 AVAMTRYYKRPILLIEFDPNKSFSLQARTSLSGEISIQ---------------------- 759
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
++T+KL LLT+HFPKLR++W PY TA+LF ELK EP + VA ++G +
Sbjct: 760 ------NVTSKLTLLTIHFPKLRILWCHSPYATAELFDELKMNHPEPDSTVAVNVGTDSS 813
Query: 281 EDYTDRYNAAIEDFISKLP 299
+Y+ + I +P
Sbjct: 814 TAADLKYSVGPQASIISMP 832
>gi|291390625|ref|XP_002711804.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 4 [Oryctolagus
cuniculus]
Length = 909
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 203/323 (62%), Gaps = 57/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 559 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 618
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 619 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASANAPTDTRKAGGQEQSGTQQSIV 678
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP LLH+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 679 VDMREFRSELPSLLHRRGIDIEPVTLEVGDYILTPEVCVERKSISDLIGSLNNGRLYSQC 738
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R Y +P+LLIEFD +KPF L L ++I+
Sbjct: 739 VAMSRCYKRPVLLIEFDPSKPFSLTPRGALFQEIS------------------------- 773
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELK R++P +VA+++ T +
Sbjct: 774 ---SSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELK--RNKPQPDVATAMAVTADS 828
Query: 282 DY---TDRYNAAIEDFISKLPGM 301
+ +++YN +DF+ K+PG+
Sbjct: 829 ESLPESEKYNPGPQDFLLKMPGV 851
>gi|392351041|ref|XP_003750828.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF [Rattus
norvegicus]
Length = 876
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ L +
Sbjct: 526 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALCK 585
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 586 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQERNGTQPSIV 645
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 646 VDMREFRSELPSLIHRRGIDIEPVTLKVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 705
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++++
Sbjct: 706 LAMSRYYRRPVLLIEFDPSKPFSLAPRGAFVQEMS------------------------- 740
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 741 ---SSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 797
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+DRYN +DF+ K+PG+
Sbjct: 798 LPESDRYNPGPQDFVLKMPGV 818
>gi|392350984|ref|XP_222534.5| PREDICTED: DNA repair endonuclease XPF-like [Rattus norvegicus]
Length = 888
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ L +
Sbjct: 538 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALCK 597
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 598 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQERNGTQPSIV 657
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 658 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 717
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++++
Sbjct: 718 LAMSRYYRRPVLLIEFDPSKPFSLAPRGAFVQEMS------------------------- 752
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 753 ---SSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 809
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+DRYN +DF+ K+PG+
Sbjct: 810 LPESDRYNPGPQDFVLKMPGV 830
>gi|417405247|gb|JAA49341.1| Putative structure-specific endonuclease ercc1-xpf catalytic
component xpf/ercc4 [Desmodus rotundus]
Length = 916
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 199/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG------------VST------------EPEESCGRVI 101
EK+AFE LI+EK +M VP E++G VST E ++ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRNETNLDLVRGSVSTGAPVDTRKAGGQEQKDVQQTIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PD+CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLIARGAFHQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+D+++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A ++ +
Sbjct: 781 ---SNDVSSKLTLLTLHFPRLRILWCCSPHATAELFEELKQNKPQPDAATAMAVTADSEA 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|426255149|ref|XP_004021225.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair endonuclease XPF [Ovis
aries]
Length = 1031
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 201/328 (61%), Gaps = 62/328 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 676 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRATRPGKPLRVYFLIYGGSTEEQRYLTALRK 735
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M +P E++G T+ ++ G+ ++
Sbjct: 736 EKEAFEKLIREKASMVIPEEREGRDETNLDLVRGCVSARAPTDTRKAGGQEQNSTQQSIV 795
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 796 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 855
Query: 162 QQMCRHYAKPLLLIEFDHNKPFEL--QGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
M R+Y +P+LLIEFD KPF L +G +Y E+ GN
Sbjct: 856 ISMSRYYKRPVLLIEFDPTKPFSLMSRGAFYQ------------------EISGN----- 892
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
D+++KL LLTLHFP+LR++WS P+ TA+LF ELKQ + +P+A A S ++P
Sbjct: 893 -------DVSSKLTLLTLHFPRLRILWSPSPHATAELFEELKQNKPQPAATPAMSYRRSP 945
Query: 280 ------NEDYTDRYNAAIEDFISKLPGM 301
++YN +DF+ K+PG+
Sbjct: 946 VTADSETLPEAEKYNPGPQDFLLKMPGI 973
>gi|317419185|emb|CBN81222.1| DNA repair endonuclease XPF [Dicentrarchus labrax]
Length = 876
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/304 (45%), Positives = 188/304 (61%), Gaps = 34/304 (11%)
Query: 4 QDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDL 63
L+ L ++P+ V+ Y+A+++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ L
Sbjct: 540 HSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQKYLTAL 599
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGV----STEPEESCGRVIVDMREFRSELPVLLHKRG 119
+EKKAFE+LI+ ++ + + E + RVIVDMREFRSELP LLH+RG
Sbjct: 600 SKEKKAFEHLIRSESFLPFLCPNSTLVYVGGQEQAKEPSRVIVDMREFRSELPSLLHRRG 659
Query: 120 LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDH 179
L IEPVT+ VGDYIL+PD CVERKS+SDLIGSLQSGRLYTQ M R+Y KP+LLIEFD
Sbjct: 660 LDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLYTQCLSMTRYYKKPVLLIEFDP 719
Query: 180 NKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
KPF L +I+ S+DI++KL LLTLHF
Sbjct: 720 QKPFSLMARSDFRHEIS----------------------------SNDISSKLTLLTLHF 751
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN--EDYTDRYNAAIEDFISK 297
P+LR++W P+ TA LF +LKQGR EP A A ++ + + D YN DF+ K
Sbjct: 752 PRLRILWCPSPHATADLFLDLKQGRFEPDAAAAQAVTAESDMVAESADLYNPGPYDFLLK 811
Query: 298 LPGM 301
+PG+
Sbjct: 812 MPGV 815
>gi|345842368|ref|NP_001230961.1| DNA repair endonuclease XPF [Cricetulus griseus]
gi|229463017|sp|Q9QYM7.3|XPF_CRIGR RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA
excision repair protein ERCC-4
gi|6683476|dbj|BAA89229.1| ERCC4 [Cricetulus griseus]
gi|169302624|gb|ACA53031.1| XPF [Cricetulus griseus]
Length = 913
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 200/323 (61%), Gaps = 57/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 563 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 622
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG------------VSTEP---------EESCG---RVI 101
EK+AFE LI+EK +M VP E++G VST+ +E G ++
Sbjct: 623 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTVSTDAPADTRKAGGQEHNGTQPSIV 682
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 683 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLNSGRLYSQC 742
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL--QGNYYLSR 219
M R+Y +P+LLIEFD KPF L +G+++
Sbjct: 743 LAMSRYYRRPVLLIEFDAG--------------------------KPFSLAPRGSFFQE- 775
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQT 278
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 776 ---MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADS 832
Query: 279 PNEDYTDRYNAAIEDFISKLPGM 301
+D+YN +DF+ K+PG+
Sbjct: 833 ETLPESDKYNPGPQDFVLKMPGI 855
>gi|329299043|ref|NP_001192289.1| DNA repair endonuclease XPF [Bos taurus]
gi|296473370|tpg|DAA15485.1| TPA: excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Bos taurus]
Length = 916
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 198/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M +P E++G +T+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVIPEEREGRDETNLDLVRGCVSANATTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD KPF L ++I+ GN
Sbjct: 746 ISMSRYYKRPMLLIEFDPTKPFSLMSRGAFHQEIS----------------GN------- 782
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
D+++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A ++ +
Sbjct: 783 -----DVSSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDATTAMAVSADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
++YN +DF+ K+PG+
Sbjct: 838 LPEAEKYNPGPQDFLLKMPGI 858
>gi|198436717|ref|XP_002125462.1| PREDICTED: similar to DNA repair endonuclease XPF (DNA excision
repair protein ERCC-4) (DNA-repair protein complementing
XP-F cells) (Xeroderma pigmentosum group F-complementing
protein) [Ciona intestinalis]
Length = 810
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 191/322 (59%), Gaps = 54/322 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
LS L ++P VI Y++ + +RQ+EVY+ + + ++V+F+ + S EEQ YL+ LRR
Sbjct: 437 LSRALEEIQPRYVILYDSSIHFVRQLEVYKACRPGIPLRVYFLTFQSSAEEQVYLTSLRR 496
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEP-------------------------EESCGRV 100
EK+AF LIQEK M +P E++G + + E+ +
Sbjct: 497 EKEAFHSLIQEKATMVIPKEREGKNKDDPQFERNVKPAYEINSRKAGGQGGLVEDKKQTI 556
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VDMREFRSELP LLHKRG+ IEP+TI VGDYIL+P+ICVERKS+SDLIGSL SGRLYTQ
Sbjct: 557 VVDMREFRSELPSLLHKRGIEIEPITIEVGDYILTPNICVERKSLSDLIGSLGSGRLYTQ 616
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
M RHY++P+LLIEFD NK F Q +R +A L + N+
Sbjct: 617 CVAMSRHYSQPMLLIEFDANKAFSFQ-----ARGVAGATLTLKELNQ------------- 658
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT-P 279
KL LL LHFPKLRL W S P A+LF +LK R++P E A++IG + P
Sbjct: 659 ----------KLTLLLLHFPKLRLAWCSSPSTAAELFHDLKLTREQPDPEKAAAIGASEP 708
Query: 280 NEDYTDRYNAAIEDFISKLPGM 301
+ ++YN A DF+ KLPG+
Sbjct: 709 DGSSDEKYNTAPYDFLLKLPGI 730
>gi|196009055|ref|XP_002114393.1| hypothetical protein TRIADDRAFT_50503 [Trichoplax adhaerens]
gi|190583412|gb|EDV23483.1| hypothetical protein TRIADDRAFT_50503 [Trichoplax adhaerens]
Length = 846
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 191/322 (59%), Gaps = 53/322 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L SL P VI Y+ ++ +RQ+EV++ ++ +++V+F Y S EEQ YL+ LR+
Sbjct: 494 LTRVLTSLNPRFVILYDPELVFVRQLEVFKASRPGQQLRVYFTMYSSSAEEQKYLTALRK 553
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPEE-SCG-----------------------RVI 101
EK+AFE LI+EK M +P E++G S ++ SC ++I
Sbjct: 554 EKEAFETLIREKAAMVIPEEREGKSDSCQQFSCDIQSIAMNVDTRIAGGRSQVNRNRKII 613
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+REFRSELP L+HKRG+ I P+T+ +GDYILSPD+CVERKS+SDLIGSL SGRLY QV
Sbjct: 614 VDVREFRSELPSLIHKRGIDIVPITLKIGDYILSPDMCVERKSLSDLIGSLNSGRLYNQV 673
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEF NKPF L+ + +I+ +
Sbjct: 674 VAMTRYYQRPILLIEFVKNKPFVLESKRFHPGEISFQ----------------------- 710
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
D+T+K+ LLTL FPKLRL+W P++TA+LF +LK DEP AS +G N
Sbjct: 711 -----DLTSKVALLTLQFPKLRLLWCDSPHSTAELFEQLKLNHDEPDPNYASEVGDEENA 765
Query: 282 DYT-DRYNAAIEDFISKLPGMA 302
D Y +DF+ KLPG++
Sbjct: 766 VVQYDMYTPKTQDFVLKLPGIS 787
>gi|444727161|gb|ELW67666.1| DNA repair endonuclease XPF [Tupaia chinensis]
Length = 729
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 200/322 (62%), Gaps = 54/322 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK-VFFMQYGESVEEQAYLSDLR 64
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG S EEQ YL+ LR
Sbjct: 378 LTRILHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVYFLIYGGSTEEQRYLTALR 437
Query: 65 REKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------V 100
+EK+AFE LI+EK M VP E++G V T+ ++ G+ +
Sbjct: 438 KEKEAFEKLIREKATMVVPEEREGRDETNLDLVRGTATTNVPTDTRKAGGQEQNGTQQSI 497
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 498 IVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQ 557
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 558 CISMSRYYKRPVLLIEFDPSKPFSLTSRGALYQEIS------------------------ 593
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTP 279
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 594 ----SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATAMAITADSE 649
Query: 280 NEDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 650 TLPESEKYNPGPQDFLLKMPGV 671
>gi|301765386|ref|XP_002918113.1| PREDICTED: DNA repair endonuclease XPF-like [Ailuropoda
melanoleuca]
Length = 913
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 201/323 (62%), Gaps = 57/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 563 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 622
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP ++G V T+ ++ G+ ++
Sbjct: 623 EKEAFEKLIREKASMVVPEGREGRDEANLDLVRGSAAAGVPTDTRKAGGQEQNRPHQTIV 682
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+REFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY Q
Sbjct: 683 VDVREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYGQC 742
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD KPF L L ++I+
Sbjct: 743 ISMSRYYKRPVLLIEFDPGKPFSLTSRGALHQEIS------------------------- 777
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
S+D+++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A+++ T +
Sbjct: 778 ---SNDVSSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDA--ATAMAVTADS 832
Query: 282 DY---TDRYNAAIEDFISKLPGM 301
D +++YN +DF+ ++PG+
Sbjct: 833 DTLPESEKYNPGPQDFLLRMPGV 855
>gi|432108564|gb|ELK33273.1| DNA repair endonuclease XPF [Myotis davidii]
Length = 902
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 202/336 (60%), Gaps = 71/336 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK------------VFFMQYGES 53
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG S
Sbjct: 540 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVIKSVECELHLVYFLIYGGS 599
Query: 54 VEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVS----------------TEPEESC 97
EEQ YL+ LR+EK+AFE LI+EK +M VP E++G S T+ ++
Sbjct: 600 TEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRSETNLDLVRGSVSAGDPTDTRKAG 659
Query: 98 GR--------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
G+ ++VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLI
Sbjct: 660 GQEQKSIQQTIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLI 719
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF 209
GSL +GRLY+Q M R+Y +P+LLIEFD +KPF L + ++I+
Sbjct: 720 GSLNNGRLYSQCISMSRYYKRPVLLIEFDPSKPFSLVARGAIHQEIS------------- 766
Query: 210 ELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA 269
S+DI++KL LLTLHFPKLRL+W P+ TA+LF ELKQ + +P A
Sbjct: 767 ---------------SNDISSKLTLLTLHFPKLRLLWCPSPHATAELFEELKQNKPQPDA 811
Query: 270 EVASSI----GQTPNEDYTDRYNAAIEDFISKLPGM 301
A ++ G P +++YN +DF+ K+PG+
Sbjct: 812 ATAMAVTADSGTLPE---SEKYNPGPQDFLLKMPGV 844
>gi|410985171|ref|XP_003998897.1| PREDICTED: DNA repair endonuclease XPF [Felis catus]
Length = 916
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 197/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS----------------TEPEESCGR--------VI 101
EK+AFE LI+EK +M VP ++G T+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEGREGRDEGNLDLVRGSASTGSPTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYGQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L ++I+ GN
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGAFHQEIS----------------GN------- 782
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
D+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A ++ +
Sbjct: 783 -----DVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAVTADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|440896817|gb|ELR48644.1| DNA repair endonuclease XPF [Bos grunniens mutus]
Length = 917
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 198/322 (61%), Gaps = 54/322 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK-VFFMQYGESVEEQAYLSDLR 64
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG S EEQ YL+ LR
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVYFLIYGGSTEEQRYLTALR 625
Query: 65 REKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------V 100
+EK+AFE LI+EK +M +P E++G +T+ ++ G+ +
Sbjct: 626 KEKEAFEKLIREKASMVIPEEREGRDETNLDLVRGCVSANATTDTRKAGGQEQNGTQQSI 685
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQ 745
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
M R+Y +P+LLIEFD KPF L ++I+ GN
Sbjct: 746 CISMSRYYKRPMLLIEFDPTKPFSLMSRGAFHQEIS----------------GN------ 783
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTP 279
D+++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A ++ +
Sbjct: 784 ------DVSSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDATTAMAVSADSE 837
Query: 280 NEDYTDRYNAAIEDFISKLPGM 301
++YN +DF+ K+PG+
Sbjct: 838 TLPEAEKYNPGPQDFLLKMPGI 859
>gi|345802291|ref|XP_536967.3| PREDICTED: DNA repair endonuclease XPF [Canis lupus familiaris]
Length = 916
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 196/321 (61%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP ++G T+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEGREGRDEGNLDLARGSAVAGTPTDTRKAGGQEQNRTQQTIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+REFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY Q
Sbjct: 686 VDVREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYGQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD KPF L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPGKPFSLTSRGAFHQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A ++ +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATAMAVTADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>gi|328766197|gb|EGF76253.1| hypothetical protein BATDEDRAFT_30944 [Batrachochytrium
dendrobatidis JAM81]
Length = 942
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 188/322 (58%), Gaps = 47/322 (14%)
Query: 1 MFAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYL 60
+F D S L LKP +I Y+ DVA +R+VE+Y+ +VKV+F+ Y SVEEQ YL
Sbjct: 595 VFNGDDSHLLEQLKPRWIIMYDPDVAFVRRVELYKAIHCNSEVKVYFLVYDNSVEEQRYL 654
Query: 61 SDLRREKKAFEYLIQEKTNMAVPTEQDG-VSTEPEE---------SCG----------RV 100
+ +RREK+AFE LI +K MA+P +QDG VST+PEE + G ++
Sbjct: 655 TSIRREKEAFEKLINQKATMAIPIDQDGRVSTDPEELFWKNVDTRNAGGLRRAPSKPYQI 714
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVD+REFRS LP L+H + + +EP T+ VGDYILSP +CVERKSISDL+ SL++GRLY Q
Sbjct: 715 IVDVREFRSPLPSLIHAKHIRLEPHTLEVGDYILSPRMCVERKSISDLVSSLKNGRLYNQ 774
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
+ MC HY P+LLIEF+ N+ F L + D
Sbjct: 775 CEAMCLHYDLPILLIEFEQNRSFS-------------------------TLSSSEVFGSD 809
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
I+ S+D+ +++ LL L FPK+ +IWSS TA++F ELK G +EP A A +G
Sbjct: 810 IS--SNDLNSRISLLCLTFPKIGVIWSSSANATAEIFAELKAGEEEPVAADAIKVGVDTK 867
Query: 281 EDYTDRYNAAIEDFISKLPGMA 302
E YN D ++ LPG++
Sbjct: 868 EAIDSAYNIIPSDVLAALPGIS 889
>gi|344240239|gb|EGV96342.1| DNA repair endonuclease XPF [Cricetulus griseus]
Length = 585
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 200/329 (60%), Gaps = 63/329 (19%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK------VFFMQYGESVEEQAY 59
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG S EEQ Y
Sbjct: 229 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVCAWRVYFLIYGGSTEEQRY 288
Query: 60 LSDLRREKKAFEYLIQEKTNMAVPTEQDG------------VSTEP---------EESCG 98
L+ LR+EK+AFE LI+EK +M VP E++G VST+ +E G
Sbjct: 289 LTALRKEKEAFEKLIREKASMVVPEEREGRDETNLDLARGTVSTDAPADTRKAGGQEHNG 348
Query: 99 ---RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG 155
++VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SG
Sbjct: 349 TQPSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLNSG 408
Query: 156 RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL--QG 213
RLY+Q M R+Y +P+LLIEF D KPF L +G
Sbjct: 409 RLYSQCLAMSRYYRRPVLLIEF--------------------------DAGKPFSLAPRG 442
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+++ SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A
Sbjct: 443 SFFQE----MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAM 498
Query: 274 SI-GQTPNEDYTDRYNAAIEDFISKLPGM 301
+I + +D+YN +DF+ K+PG+
Sbjct: 499 AITADSETLPESDKYNPGPQDFVLKMPGI 527
>gi|451850935|gb|EMD64236.1| hypothetical protein COCSADRAFT_160465 [Cochliobolus sativus
ND90Pr]
Length = 949
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 183/316 (57%), Gaps = 40/316 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP VI Y D A IR++EVY+ + ++ VKVFFM YG SVEEQ YLS +RREK A
Sbjct: 598 LDETKPRYVIMYEPDAAFIRRIEVYRSSHTDRTVKVFFMYYGGSVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA T+ + PEES G RV+VD+REFRS
Sbjct: 658 FTRLIKERANMAF-TQNPSANLAPEESFLRTINTRIAGGGRLAATAEPPRVVVDVREFRS 716
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+L+P ICVERKSI DLI S +GRL+ QV+ M HY
Sbjct: 717 SLPSLLHGRSMVIVPCMLTVGDYVLTPQICVERKSIRDLIASFTNGRLFNQVESMTEHYK 776
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ F D + P N S +A + D+
Sbjct: 777 HPMLLIEFDQNKSFTLE-----------PFT---DFSAPAASSTNSAFS---SATTPDLQ 819
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN--EDYTDRY 287
+KL +LTL FP+LR+IWSS PY TA++F ELK+ +DEP A +G P+ D +
Sbjct: 820 SKLVMLTLAFPRLRIIWSSSPYQTAEIFAELKKQQDEPDPLRAVQLGLDPHLSGDEMRSF 879
Query: 288 NAAIEDFISKLPGMAE 303
N +D + LPG+ E
Sbjct: 880 NQTSQDMLRALPGINE 895
>gi|311780283|gb|ADQ08682.1| xeroderma pigmentosum F DNA repair endonuclease [Hydra vulgaris]
Length = 816
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 189/317 (59%), Gaps = 51/317 (16%)
Query: 9 KLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKK 68
KL L+P V+ Y+A + +RQ+E+++ + E + V+F+ Y SVEEQ YL++LR+EK+
Sbjct: 464 KLYELQPNYVVLYDAHIRFVRQLEIFKASMPEQPLHVYFLIYNGSVEEQRYLTNLRKEKE 523
Query: 69 AFEYLIQEKTNMAVPTEQDGVST--------EPEE------SCGR--------VIVDMRE 106
+FE LI++K M VP E+D S+ +P E + GR +IVDMRE
Sbjct: 524 SFELLIKQKAEMVVPEERDAKSSIAKSTLRQKPNELVTTRNAGGRENIQLNKKIIVDMRE 583
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
FRSELP L++KRG+ I PVT+ VGDYILSP++CVERKSI+DLIGSL +GRLY+Q M R
Sbjct: 584 FRSELPSLIYKRGIDIVPVTLEVGDYILSPEMCVERKSITDLIGSLNNGRLYSQCLAMTR 643
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
Y KP+LLIEFD K F LQG LS D++ +
Sbjct: 644 FYKKPILLIEFDEGKSFSLQGKKSLSNDVSFQ---------------------------- 675
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD- 285
+I++KL LL +HFP LR+IWS P TA++F +LK +EP + A S+ E + +
Sbjct: 676 NISSKLSLLIIHFPLLRIIWSQNPSLTAEIFEDLKSNTNEPDVDYAISVSADQTEPFNEL 735
Query: 286 RYNAAIEDFISKLPGMA 302
YN D + K PG++
Sbjct: 736 LYNVVPLDVLQKFPGIS 752
>gi|396464083|ref|XP_003836652.1| similar to DNA repair protein RAD1 [Leptosphaeria maculans JN3]
gi|312213205|emb|CBX93287.1| similar to DNA repair protein RAD1 [Leptosphaeria maculans JN3]
Length = 1002
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 188/325 (57%), Gaps = 40/325 (12%)
Query: 2 FAQDLSSK-LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYL 60
+A DL L KP VI Y D A IR++EVY+ + ++ VKVFFM YG SVEEQ YL
Sbjct: 641 YAGDLDEHILDETKPRYVIMYEPDAAFIRRIEVYRSSHTDRTVKVFFMYYGGSVEEQRYL 700
Query: 61 SDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RV 100
S +RREK AF LI+E+ NMA+ T + PEE+ G RV
Sbjct: 701 SAVRREKDAFTRLIKERGNMAL-TLHTNANLAPEEAFLRTINTRIAGGGRLTATTEPPRV 759
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VD+REFRS LP LLH R + I P ++VGDY+L+P IC+ERKS+ DLI S +GRL+ Q
Sbjct: 760 VVDVREFRSSLPSLLHGRAIVIVPCMLTVGDYVLTPQICIERKSVRDLIQSFANGRLFNQ 819
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
V+ M HY +P+LLIEFD NK F L+ F+ D + P G +
Sbjct: 820 VESMMEHYKQPMLLIEFDANKSFTLE-----------PFM---DFSAPG--GGAAATNAS 863
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN 280
A + D+ +KL +LTL FP+LR+IWSS PY TA++F ELK+G DEP A +G PN
Sbjct: 864 GLAAAPDLQSKLVMLTLAFPRLRIIWSSSPYQTAEIFAELKKGADEPDPMKAVQLGLDPN 923
Query: 281 --EDYTDRYNAAIEDFISKLPGMAE 303
D +N +D + LPG+ E
Sbjct: 924 MGGDELRSFNQTSQDMLRALPGVTE 948
>gi|169608720|ref|XP_001797779.1| hypothetical protein SNOG_07446 [Phaeosphaeria nodorum SN15]
gi|111063792|gb|EAT84912.1| hypothetical protein SNOG_07446 [Phaeosphaeria nodorum SN15]
Length = 948
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 182/317 (57%), Gaps = 46/317 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + ++ VKVFFM YG SVEEQ YLS +RREK A
Sbjct: 598 LEETKPRYIIMYEPDAAFIRRVEVYRSSHTDRTVKVFFMYYGGSVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ T + PEES G RV+VD+REFRS
Sbjct: 658 FTRLIKERANMAL-TLNTNANLAPEESFLRTINTRIAGGGRLAASAEPPRVVVDVREFRS 716
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+L+P IC+ERKS+ DLIGS +GRL+ QV+ M HY
Sbjct: 717 SLPSLLHGRAMVIVPCMLTVGDYVLTPHICIERKSVRDLIGSFANGRLFNQVESMMEHYK 776
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ F D + P G A + D+
Sbjct: 777 HPMLLIEFDQNKSFTLE-----------PFT---DFSAPSNASG--------LAAAPDLQ 814
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN---EDYTDR 286
KL +LTL FP+LR++WSS PY TA++F ELK+ +DEP A +G P+ +D
Sbjct: 815 GKLVMLTLAFPRLRIVWSSSPYQTAEIFHELKKQQDEPDPLRAVQLGLDPDMQGQDEMRS 874
Query: 287 YNAAIEDFISKLPGMAE 303
+N +D + LPG+ E
Sbjct: 875 FNQTSQDMLRALPGVNE 891
>gi|189199416|ref|XP_001936045.1| DNA repair endonuclease XPF [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983144|gb|EDU48632.1| DNA repair endonuclease XPF [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 948
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 185/316 (58%), Gaps = 41/316 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP V+ Y D A IR++EVY+ + ++ VKVFFM YG SVEEQ YLS +RREK A
Sbjct: 598 LDETKPRYVVMYEPDAAFIRRIEVYRSSHTDRTVKVFFMYYGGSVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ T + PEES G RV+VD+REFRS
Sbjct: 658 FTRLIKERANMAL-TMNSAANLAPEESFLRTINTRIAGGGRLAATAEPPRVVVDVREFRS 716
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+++P IC+ERKSI DLI S +GRL+ QV+ M HY
Sbjct: 717 SLPSLLHGRSMVIVPCMLTVGDYVVTPHICIERKSIRDLIQSFANGRLFNQVESMMEHYK 776
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ F D + P G + +A+ S D+
Sbjct: 777 HPMLLIEFDQNKSFTLE-----------PFT---DFSAP---SGGGASASGLAS-SPDLQ 818
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE--DYTDRY 287
AKL +LTL FP+LR+IWSS PY TA++F ELK+ +DEP A IG PN+ D +
Sbjct: 819 AKLVMLTLAFPRLRIIWSSSPYQTAEIFSELKKQQDEPDPLKAVQIGLDPNQSGDEMRSF 878
Query: 288 NAAIEDFISKLPGMAE 303
N +D + LPG+ E
Sbjct: 879 NQTSQDMLCALPGINE 894
>gi|330944954|ref|XP_003306466.1| hypothetical protein PTT_19608 [Pyrenophora teres f. teres 0-1]
gi|311316030|gb|EFQ85442.1| hypothetical protein PTT_19608 [Pyrenophora teres f. teres 0-1]
Length = 1046
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 181/321 (56%), Gaps = 49/321 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP V+ Y D A IR++EVY+ + ++ VKVFFM YG SVEEQ YLS +RREK A
Sbjct: 694 LDETKPRYVVMYEPDAAFIRRIEVYRSSHTDRTVKVFFMYYGGSVEEQRYLSAVRREKDA 753
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ T + PEES G RV+VD+REFRS
Sbjct: 754 FTRLIKERANMAL-TMNSAANLAPEESFLRTINTRIAGGGRLAATAEPPRVVVDVREFRS 812
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+++P IC+ERKSI DLI S +GRL+ QV+ M HY
Sbjct: 813 SLPSLLHGRSMVIVPCMLTVGDYVVTPHICIERKSIRDLIQSFANGRLFNQVESMMEHYK 872
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-----ELQGNYYLSRDIAAK 224
P+LLIEFD NK F L+ PF G S A
Sbjct: 873 HPMLLIEFDQNKSFTLE---------------------PFTDFSAPSGGAASASASGLAS 911
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE--D 282
+ D+ AKL +LTL FP+LR+IWSS PY TA++F ELK+ +DEP A IG PN+ D
Sbjct: 912 APDLQAKLVMLTLAFPRLRIIWSSSPYQTAEIFSELKKQQDEPDPLKAVQIGLDPNQSGD 971
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
+N +D + LPGM E
Sbjct: 972 EMRSFNQTSQDMLRALPGMNE 992
>gi|281340601|gb|EFB16185.1| hypothetical protein PANDA_006513 [Ailuropoda melanoleuca]
Length = 927
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 201/337 (59%), Gaps = 71/337 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK--------------VFFMQYG 51
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++ V+F+ YG
Sbjct: 563 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRQVMKNMSCCFFLFLVYFLIYG 622
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEE 95
S EEQ YL+ LR+EK+AFE LI+EK +M VP ++G V T+ +
Sbjct: 623 GSTEEQRYLTALRKEKEAFEKLIREKASMVVPEGREGRDEANLDLVRGSAAAGVPTDTRK 682
Query: 96 SCGR--------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISD 147
+ G+ ++VD+REFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISD
Sbjct: 683 AGGQEQNRPHQTIVVDVREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISD 742
Query: 148 LIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNK 207
LIGSL +GRLY Q M R+Y +P+LLIEFD KPF L L ++I+
Sbjct: 743 LIGSLNNGRLYGQCISMSRYYKRPVLLIEFDPGKPFSLTSRGALHQEIS----------- 791
Query: 208 PFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
S+D+++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P
Sbjct: 792 -----------------SNDVSSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQP 834
Query: 268 SAEVASSIGQTPNEDY---TDRYNAAIEDFISKLPGM 301
A A+++ T + D +++YN +DF+ ++PG+
Sbjct: 835 DA--ATAMAVTADSDTLPESEKYNPGPQDFLLRMPGV 869
>gi|260789317|ref|XP_002589693.1| hypothetical protein BRAFLDRAFT_100820 [Branchiostoma floridae]
gi|229274875|gb|EEN45704.1| hypothetical protein BRAFLDRAFT_100820 [Branchiostoma floridae]
Length = 515
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 171/282 (60%), Gaps = 52/282 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L +KP+ V+ Y+ ++ +RQ+EVY+ + V ++V+F+ Y S EEQ YL+ LRR
Sbjct: 192 LTRTLHEVKPSYVVLYDPEMEFVRQLEVYKAGRPGVPLRVYFLIYTTSTEEQRYLTSLRR 251
Query: 66 EKKAFEYLIQEKTNMAVPTEQD----------------GVSTEPEESCGRVIVDMREFRS 109
EK AFE+LI+EK ++ +P E D G +E ++IVDMREFRS
Sbjct: 252 EKDAFEHLIKEKASLVLPEEPDVTRDMTPATEVSTRRAGGQESQDELQPKIIVDMREFRS 311
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
ELP L+H+RG+ IEP+T+ VGDYIL+PD+CVERKSISDLIGSL SGRL+ Q M R Y
Sbjct: 312 ELPSLIHRRGVDIEPITLQVGDYILTPDMCVERKSISDLIGSLNSGRLFNQAVAMTRSYK 371
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ----GNYYLSRDIAAKS 225
+P+LLIEF D NKPF LQ G+Y +S
Sbjct: 372 RPILLIEF--------------------------DTNKPFSLQTKGAGHYEMS------F 399
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
++ AKL LLTLHFP LR++WS PY TA+LF ELK R EP
Sbjct: 400 QEVQAKLALLTLHFPGLRILWSRSPYATAELFQELKLNRPEP 441
>gi|451996406|gb|EMD88873.1| hypothetical protein COCHEDRAFT_1205974 [Cochliobolus
heterostrophus C5]
Length = 949
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 181/320 (56%), Gaps = 48/320 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP VI Y D A IR++EVY+ + ++ VKVFFM YG SVEEQ YLS +RREK A
Sbjct: 598 LDETKPRYVIMYEPDAAFIRRIEVYRSSHTDRTVKVFFMYYGGSVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA T+ + PEES G RV+VD+REFRS
Sbjct: 658 FTRLIKERANMAF-TQNPSANLAPEESFLRTINTRIAGGGRLAATAEPPRVVVDVREFRS 716
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+L+P ICVERKSI DLI S +GRL+ QV+ M HY
Sbjct: 717 SLPSLLHGRSMVIVPCMLTVGDYVLTPQICVERKSIRDLIASFTNGRLFNQVESMTEHYK 776
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF----ELQGNYYLSRDIAAKS 225
P+LLIEFD NK F L+ PF + S +A +
Sbjct: 777 HPMLLIEFDQNKSFTLE---------------------PFTDFSAPAASSSNSAFSSASA 815
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN--EDY 283
D+ +KL +LTL FP+LR+IWSS PY TA++F ELK+ +DEP A +G P+ D
Sbjct: 816 PDLQSKLVMLTLAFPRLRIIWSSSPYQTAEIFAELKKQQDEPDPLRAVQLGLDPHLSGDE 875
Query: 284 TDRYNAAIEDFISKLPGMAE 303
+N +D + LPG+ E
Sbjct: 876 MRSFNQTSQDMLRALPGINE 895
>gi|452987483|gb|EME87238.1| hypothetical protein MYCFIDRAFT_212808 [Pseudocercospora fijiensis
CIRAD86]
Length = 953
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 180/314 (57%), Gaps = 44/314 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP VI Y D A IR++EVY+ + S +V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 611 LEEIKPRYVIMYEPDAAFIRRIEVYRSSHSNRQVRVYFMYYGGSVEEQRYLSAVRREKDS 670
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ D + +P+ES G RV+VD+REFRS
Sbjct: 671 FTRLIRERGNMAMTFTHDSDNMDPQESFLRTVNTRIAGGGRLTATAEPPRVVVDVREFRS 730
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP L H R + + P ++VGDY+L+PDICVERKSI DLI S +GRLY Q + M +HY
Sbjct: 731 SLPSLCHGRNMVVIPCMLTVGDYVLTPDICVERKSIGDLISSFNNGRLYNQAETMFQHYK 790
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD K F L+ L+ + +K ++ +D+
Sbjct: 791 SPMLLIEFDAQKAFTLEPFADLTSSVGSKDMV-----------------------GTDLQ 827
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FP+LR+IWSS PY TA++F ELK +DEP A G ED R ++
Sbjct: 828 SKLVLLTLAFPRLRIIWSSSPYQTAEIFEELKNKQDEPDPIKAVQTGLENGEDPETRTFS 887
Query: 289 AAIEDFISKLPGMA 302
+D + +PG+
Sbjct: 888 QVPQDMLRCVPGVT 901
>gi|119605524|gb|EAW85118.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4, isoform CRA_b [Homo sapiens]
Length = 897
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 182/293 (62%), Gaps = 53/293 (18%)
Query: 34 YQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDG----- 88
+Q S + +V+F+ YG S EEQ YL+ LR+EK+AFE LI+EK +M VP E++G
Sbjct: 575 FQPKSSVLTCRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRDETN 634
Query: 89 -----------VSTEPEESCGR--------VIVDMREFRSELPVLLHKRGLYIEPVTISV 129
VST+ ++ G+ ++VDMREFRSELP L+H+RG+ IEPVT+ V
Sbjct: 635 LDLVRGTASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSELPSLIHRRGIDIEPVTLEV 694
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDYIL+P++CVERKSISDLIGSL +GRLY+Q M R+Y +P+LLIEFD +KPF L
Sbjct: 695 GDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRG 754
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
L ++I+ S+DI++KL LLTLHFP+LR++W
Sbjct: 755 ALFQEIS----------------------------SNDISSKLTLLTLHFPRLRILWCPS 786
Query: 250 PYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKLPGM 301
P+ TA+LF ELKQ + +P A A +I + +++YN +DF+ K+PG+
Sbjct: 787 PHATAELFEELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPGV 839
>gi|398398531|ref|XP_003852723.1| hypothetical protein MYCGRDRAFT_41772 [Zymoseptoria tritici IPO323]
gi|339472604|gb|EGP87699.1| hypothetical protein MYCGRDRAFT_41772 [Zymoseptoria tritici IPO323]
Length = 941
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 179/313 (57%), Gaps = 45/313 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP VI Y D A IR++E+Y+ + +V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 600 LEEVKPRYVIMYEPDAAFIRRIEMYRSSHGNRQVRVYFMYYGGSVEEQRYLSAVRREKDS 659
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ D + +P+ES G RV+VD+REFRS
Sbjct: 660 FAKLIRERGNMALTFTHDTDNMDPQESFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 719
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP L+H R + + P ++VGDY+L+PDICVERKSI DLI S GRLY Q + M ++Y
Sbjct: 720 SLPSLIHGRNMVVVPCMLTVGDYVLTPDICVERKSIKDLISSFSDGRLYNQAETMLQYYK 779
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD K F L+ PF +Y S SD+
Sbjct: 780 APMLLIEFDAQKAFTLE---------------------PF---ADYSASSSSNLVGSDLQ 815
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FP+LR+IWSS PY TA++F ELK+ +DEP A +G ED R +N
Sbjct: 816 SKLVLLTLAFPRLRIIWSSSPYQTAEIFEELKKQQDEPDPIRAVQLGLGEGEDAETRTFN 875
Query: 289 AAIEDFISKLPGM 301
+D + +PG+
Sbjct: 876 QTPQDMLRAVPGV 888
>gi|407925047|gb|EKG18069.1| hypothetical protein MPH_04759 [Macrophomina phaseolina MS6]
Length = 935
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 184/314 (58%), Gaps = 44/314 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P VI Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 595 LEEVRPRYVIMYEPDAAFIRRVEVYRSSHTDRNVRVYFMYYGGSVEEQRYLSSVRREKDS 654
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E++NMAV + + T+P+E+ G RV+VD+REFRS
Sbjct: 655 FSKLIRERSNMAVVLDNNNNITDPQEAFLRTVNTRIAGGGRVAATATPPRVVVDVREFRS 714
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDY+L+P IC+ERKS+ DLI S +GRLY Q + M +HY
Sbjct: 715 SLPSLLHGRNMVVVPCMLTVGDYVLTPHICIERKSVRDLISSFNNGRLYNQAETMLQHYK 774
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ LS+ AA A + D+
Sbjct: 775 NPMLLIEFDQNKSFTLEPFADLSQSAAAA-----------------------AMAAPDLQ 811
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
AK+ +LT+ FP+LR+IWSS PY TA++F ELK+ +DEP A IG ED R ++
Sbjct: 812 AKIVMLTIAFPRLRIIWSSSPYQTAEIFEELKKQQDEPDPIKAVQIGLDDGEDPEGRTFS 871
Query: 289 AAIEDFISKLPGMA 302
+D + +PG+
Sbjct: 872 QVPQDMLRAVPGIT 885
>gi|256081825|ref|XP_002577168.1| DNA repair endonuclease xp-f / mei-9 / rad1 [Schistosoma mansoni]
gi|360043956|emb|CCD81502.1| putative dna repair endonuclease xp-f / mei-9 / rad1 [Schistosoma
mansoni]
Length = 954
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 202/366 (55%), Gaps = 54/366 (14%)
Query: 2 FAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQC-----------AQSEV--------K 42
+ LS L L+P VI Y +V+ +R++EVY + S +
Sbjct: 553 YGYRLSYVLDVLQPNYVILYEPNVSWVRELEVYNARLLIQRFSKNESSSNIGERNNSLPS 612
Query: 43 VKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQD----GVSTEPEESCG 98
+K++F+ Y SVEEQ YL+ LR+EK+AFE LIQ + + +P + ++ + ++
Sbjct: 613 LKIYFVLYENSVEEQRYLTSLRKEKEAFESLIQLSSTIVIPKDTTIPYGKLNPDDNQAVS 672
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RVIVDMREFRSELP LLH++GL +EP+T+S+ DYIL+P +CVERKS+SDLIGSL SGRLY
Sbjct: 673 RVIVDMREFRSELPALLHRKGLKVEPMTLSIADYILAPHLCVERKSVSDLIGSLNSGRLY 732
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q M RHYA P+LLIEF + P ++ Y R N E ++ L
Sbjct: 733 HQATAMSRHYASPVLLIEF--SIPNKVGFTLYTGRHAI---------NPSSEFNSHHLL- 780
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT 278
AKL LLT+HFP LR+ WS PY TA+LF E+K GR EPSAE G
Sbjct: 781 -----------AKLVLLTIHFPNLRIFWSMTPYCTAELFAEIKLGRPEPSAEKLPQDG-- 827
Query: 279 PNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNF--LTELFRASSFF 336
D+ + +N D + KLPG++ W R + V L + LTE+ SS
Sbjct: 828 ---DHLEDHNVEAVDMLLKLPGIS-WKNYRRIMSHVSSLYDLVNCSIERLTEILDNSSNL 883
Query: 337 LLLFRI 342
+ LF++
Sbjct: 884 IYLFKL 889
>gi|453089008|gb|EMF17048.1| DNA repair protein [Mycosphaerella populorum SO2202]
Length = 950
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 182/314 (57%), Gaps = 44/314 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP VI Y D A IR++EVY+ + + +V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 608 LEEIKPRYVIMYEPDAAFIRRIEVYRSSHTSRQVRVYFMYYGASVEEQRYLSTVRREKDS 667
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ D + +P+E+ G RV+VD+REFRS
Sbjct: 668 FTKLIRERGNMAMTFTHDVDNQDPQETFLRTVNTRIAGGGRLMATAEPPRVVVDVREFRS 727
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDY+L+PDICVERKS+SDLI S +GRLY Q + M +HY
Sbjct: 728 SLPSLLHGRNMVVIPCMLTVGDYVLTPDICVERKSVSDLISSFNNGRLYNQAETMLQHYK 787
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD K F L+ LS I ++ SD+
Sbjct: 788 SPMLLIEFDAQKAFTLEPFADLSSSIGTASVV-----------------------GSDLQ 824
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FP+L+++WSS PY TA++F ELK ++EP A +G ED R +N
Sbjct: 825 SKLVLLTLAFPRLKIVWSSSPYQTAEIFEELKNKQEEPDPIKAVQLGLEHGEDPETRTFN 884
Query: 289 AAIEDFISKLPGMA 302
++ + +PG++
Sbjct: 885 QTPQEMLRCVPGVS 898
>gi|351701246|gb|EHB04165.1| DNA repair endonuclease XPF [Heterocephalus glaber]
Length = 877
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 188/321 (58%), Gaps = 71/321 (22%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ V+F+ YG S EEQ YL+ LR+
Sbjct: 545 LTRVLHEVEPRFVVLYDAELT------------------VYFLIYGGSTEEQRYLTALRK 586
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G + + ++ G+ ++
Sbjct: 587 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTASTHAAADTRKAGGQEQNGTQQSIV 646
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 647 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 706
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 707 ISMSRYYKRPVLLIEFDPSKPFSLSARGALFQEIS------------------------- 741
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSDI++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 742 ---SSDISSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 798
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 799 LPESEKYNPGPQDFLLKMPGV 819
>gi|390357972|ref|XP_003729146.1| PREDICTED: DNA repair endonuclease XPF-like isoform 1
[Strongylocentrotus purpuratus]
gi|390357974|ref|XP_003729147.1| PREDICTED: DNA repair endonuclease XPF-like isoform 2
[Strongylocentrotus purpuratus]
Length = 955
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 208/381 (54%), Gaps = 69/381 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L L+P VI Y+A++ +RQ+EV++ + ++V+F+ Y S EEQ YL+ LR
Sbjct: 549 LTKTLHELEPRYVILYDAEIQFVRQLEVFKACRPNHPLRVYFLIYSGSTEEQKYLTSLRY 608
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG-------VSTEP-----------------EESCGRVI 101
EK AFE LI+EK+ M +P + DG +S +P + ++I
Sbjct: 609 EKSAFENLIKEKSTMVLPADIDGKDDSARELSRDPALPSASSSRNAGGQAMVTQGQKKII 668
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+HKRG+ IEPVTI VGDYIL+PDICVERKSISDLIGSL +GRLY Q
Sbjct: 669 VDMREFRSELPSLIHKRGIDIEPVTIEVGDYILTPDICVERKSISDLIGSLANGRLYNQA 728
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R Y +P+LLIEF+ NK F LQ +S +I+ +
Sbjct: 729 LSMTRFYKRPVLLIEFNPNKSFALQTQSTMSNEISYQ----------------------- 765
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
++++KL LLTLHFPKLR++W P+ TA+LF ELK GR EP A +A+SI
Sbjct: 766 -----NLSSKLTLLTLHFPKLRILWCPSPHATAELFEELKIGRSEPDAAIAASITVEEEG 820
Query: 282 DYT----------DRYNAAIEDFISKLPGMAE---WSRARTLN--LEVLGLNPGQGGNFL 326
YN A D + KLPG+ W R L E++ L+ + G L
Sbjct: 821 AGEGGDESSPLTKQMYNHAPYDMLLKLPGINIKNCWRIMRNLTDLTELVSLSQERLGEIL 880
Query: 327 TELFRASSFFLLLFRIKPAPG 347
+ ++ FL F K G
Sbjct: 881 AH--QGNAKFLWEFLHKEGGG 899
>gi|402075145|gb|EJT70616.1| DNA repair protein rad16 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1000
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 188/335 (56%), Gaps = 47/335 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P V+ Y D A IR+VEVY+ + ++ V+V+F+ YG SVEEQ YL+ +RREK A
Sbjct: 649 LEEVRPRWVVMYEPDAAFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQHYLASIRREKDA 708
Query: 70 FEYLIQEKTNMAVPT-----EQDGVSTEPEES---------CG-------------RVIV 102
F LI+E+ NM+V + +P+E+ G RV+V
Sbjct: 709 FTRLIKERANMSVVVGGAVDPHAATTDDPQEAFLRTVNTRIAGGGRLGASATAEPPRVVV 768
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
D+REFRS LP L+H R + I P ++VGDYILSP+ICVERKSISDLI SL+ GRLYTQ +
Sbjct: 769 DVREFRSSLPSLVHGRSMVIVPCMLTVGDYILSPNICVERKSISDLISSLKDGRLYTQCE 828
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
M +HY P+LLIEFDH K F L+ LS +++ H P
Sbjct: 829 AMFQHYKNPMLLIEFDHGKSFTLEPFADLSGSLSSVRAASASHQPP-------------- 874
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
D+ AKL L+TL FPKLRLIWSS PY TA++F LK EP A G +
Sbjct: 875 ----DLQAKLVLVTLAFPKLRLIWSSSPYETAEIFERLKAQEAEPDPVAAVRAGLDGGQA 930
Query: 283 YTDR-YNAAIEDFISKLPGMAEWS-RARTLNLEVL 315
D+ +N D +S +PG+ + RA T ++E L
Sbjct: 931 ADDQPFNQEPHDMLSIVPGVTPKNVRAVTAHVENL 965
>gi|328863440|gb|EGG12539.1| DNA repair protein rad16 [Melampsora larici-populina 98AG31]
Length = 954
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 211/408 (51%), Gaps = 81/408 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P ++ Y DVA +R+VE Y+ + + VK +FM Y +SVEEQ YLS +RREK+A
Sbjct: 598 LEELHPRYIVMYEPDVAFVRRVECYRASNPGLNVKTYFMMYSDSVEEQRYLSSVRREKEA 657
Query: 70 FEYLIQEKTNMAVPTEQD---GVSTEPE---------------ESCGRVIVDMREFRSEL 111
FE LI+E M VP + + G STE E +V+VD+REFRS L
Sbjct: 658 FERLIRENATMVVPLQAEVRPGESTEEETLRTISSRLGGKALQSGLPQVVVDVREFRSSL 717
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LLH +EP T+ VGDYI+SPD+CVERKSISDLI S SGRLY Q + M HY +P
Sbjct: 718 PSLLHAANFLVEPTTLIVGDYIISPDMCVERKSISDLIQSFNSGRLYQQCEMMTAHYKQP 777
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS-SDITA 230
+LLIEFD K F L Y +R + + ++ A S +D+ A
Sbjct: 778 ILLIEFDQKKSFSLD-TYKDTRGAGSS-------------------ATNLKAPSDTDLQA 817
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAA 290
KL LLTL FPKLRLIWSS P TA++F E+K G EP AS I
Sbjct: 818 KLVLLTLSFPKLRLIWSSSPQATAEIFREIKSGHPEPDTTTASLI--------------- 862
Query: 291 IEDFISKLPGMAEWSRA-RTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRE 349
G+ E+S+A + NLE++ +G N +++ L I+ PG
Sbjct: 863 ---------GLDEYSKADKAGNLELI-----EGSN-------SNNRILSEEMIRSLPGMN 901
Query: 350 SNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYK 397
++ K V N L LC LSE+E+ +L+ G+ LYK
Sbjct: 902 LINSNKILRSKKKKVNN----LRELCGLSEREMKNLI-GIESGSKLYK 944
>gi|326435778|gb|EGD81348.1| hypothetical protein PTSG_11379 [Salpingoeca sp. ATCC 50818]
Length = 830
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 179/311 (57%), Gaps = 65/311 (20%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +++FY+ +A R+VE+YQ A EV + V+FM Y S +EQ YLS +R EK+A
Sbjct: 474 LNDVKPKTIVFYDPHLACAREVELYQSAHPEVDLHVYFMMYRTSFQEQQYLSSIRHEKEA 533
Query: 70 FEYLIQEKTNMAVPTEQDG------------------------VSTEPEESCGRV----- 100
FE +I K MA+P +QDG V GRV
Sbjct: 534 FERIITAKRTMALPADQDGRRGIRQAEERQLKTRLVASRSSSVVGASTRRGGGRVAEGAP 593
Query: 101 ----IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
IVDMREFRS LP L+H+ G+ + PVT+ VGDY+LSPDICVERKS+ DLIGSL SGR
Sbjct: 594 RPKVIVDMREFRSSLPSLIHEFGMDVVPVTLIVGDYVLSPDICVERKSLPDLIGSLSSGR 653
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN-Y 215
LY+QV M +YA+P LLIEFD + KPF L G+
Sbjct: 654 LYSQVLAMTTYYARPALLIEFDES--------------------------KPFSLLGSGE 687
Query: 216 YLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
LS DI K++ +KL LLTL FP LR++WS P+ TA+LF+ LKQ +DEP A A+++
Sbjct: 688 TLSDDIEFKNT--MSKLTLLTLTFPSLRVLWSRSPHATAELFYTLKQHQDEPDATAAANV 745
Query: 276 GQ--TPN-EDY 283
G+ T N EDY
Sbjct: 746 GEEGTHNEEDY 756
>gi|296425874|ref|XP_002842463.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638731|emb|CAZ86654.1| unnamed protein product [Tuber melanosporum]
Length = 902
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 181/314 (57%), Gaps = 51/314 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P VI Y D A IR+VEVY+ + + +V+V+F+ YG+SVEEQ YLS +RREK +
Sbjct: 570 LGELHPRYVIMYEPDPAFIRRVEVYRSSHKDREVRVYFLYYGKSVEEQRYLSAVRREKDS 629
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F L+ EK +M+V D + E P+E+ G RVIVD+REFR
Sbjct: 630 FTKLVHEKGSMSVTLTLDAKAIEDPQEAFLRTVNTRIAGGGRITATAVPPRVIVDIREFR 689
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P T++VGDYILSPDICVERKS+ DLI S + GRLYTQ + M +Y
Sbjct: 690 SSLPSLLHGRNVEVVPCTLTVGDYILSPDICVERKSVKDLISSFKDGRLYTQCENMLLYY 749
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P++LIEFD NK F L+ PF +L G + D
Sbjct: 750 KNPMVLIEFDQNKSFNLE---------------------PFADLTG--------SISQHD 780
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
+ AKL LLT+ FPK++LIWSS PY TA++F ELK+ + EP A +G P E+ Y
Sbjct: 781 LQAKLVLLTIAFPKVKLIWSSSPYQTAEIFEELKRNQGEPDPLEAIKLGLEPGEEIAGVY 840
Query: 288 NAAIEDFISKLPGM 301
N ++ + +PG+
Sbjct: 841 NQTPQEILRSIPGI 854
>gi|452846597|gb|EME48529.1| hypothetical protein DOTSEDRAFT_162102 [Dothistroma septosporum
NZE10]
Length = 943
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 44/314 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP VI Y D A IR++EVY+ + +V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 603 LEEIKPRYVIMYEPDAAFIRRIEVYRSSHGNRQVRVYFMYYGGSVEEQKYLSTVRREKDA 662
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ D +P+ES G RV+VD+REFRS
Sbjct: 663 FAKLIRERGNMALTFTHDASKDDPQESFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 722
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP L H R + + P ++VGDY+L+PDIC+ERKS+ DLI S GRLY Q + M +HY
Sbjct: 723 SLPSLCHGRQMIVIPCMLTVGDYVLTPDICIERKSVKDLISSFSDGRLYNQAETMLQHYK 782
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD K F L+ LS I ++ SD+
Sbjct: 783 NPMLLIEFDAQKAFTLEPFADLSATIGTSSVV-----------------------GSDLQ 819
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FPKLR+IWSS PY TA++F ELK+ + EP A +G ED R ++
Sbjct: 820 SKLVLLTLAFPKLRIIWSSSPYQTAEIFEELKKQQPEPDPIKAVQLGLENGEDPETRTFS 879
Query: 289 AAIEDFISKLPGMA 302
+D + +PG+
Sbjct: 880 QTPQDMLRCVPGVT 893
>gi|310791066|gb|EFQ26595.1| DNA repair protein [Glomerella graminicola M1.001]
Length = 933
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 183/317 (57%), Gaps = 49/317 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 592 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGESVEEQRYLSSVRREKDA 651
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 652 FTKLIKERASMSLVMTVDPHGAEDPQEAFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 711
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDY+LSP ICVERKSISDLI S + GRLY Q + M +HY
Sbjct: 712 SSLPSLLHGRSMIIVPCMLTVGDYVLSPSICVERKSISDLISSFKDGRLYAQCETMFQHY 771
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAK--S 225
P+LLIEFD NK F L+ PF +L G+ IA S
Sbjct: 772 KSPMLLIEFDQNKSFTLE---------------------PFADLSGSL---NSIAPTNVS 807
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
SD+ +KL LLTL FPKLR+IWSS PY TA++F LK DEP A G + D
Sbjct: 808 SDLQSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKSQEDEPDPIAAVRAGLDSDMKAED 867
Query: 286 R-YNAAIEDFISKLPGM 301
+ +N ++ +S +PG+
Sbjct: 868 QAFNLEPQEMLSAVPGV 884
>gi|431910465|gb|ELK13537.1| DNA repair endonuclease XPF [Pteropus alecto]
Length = 891
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 184/321 (57%), Gaps = 71/321 (22%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ V+F+ YG S EEQ YL+ LR+
Sbjct: 559 LTRVLHEVEPRYVVLYDAELT------------------VYFLIYGGSTEEQRYLTALRK 600
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS------TEPEESCG------------------RVI 101
EK+AFE LI+EK +M VP E++G + ES G ++
Sbjct: 601 EKEAFEKLIREKASMVVPEEREGRTETNLDLVRGSESAGVLADTRKAGGQEQKGTQQTIV 660
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PD+CVERKSISDLIGSL +GRLY+Q
Sbjct: 661 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDMCVERKSISDLIGSLNNGRLYSQC 720
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R Y +P+LLIEFD +KPF L ++I+
Sbjct: 721 ISMSRFYKRPVLLIEFDPSKPFSLTARGAFHQEIS------------------------- 755
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ A+LF ELKQ + +P A A ++ +
Sbjct: 756 ---SNDISSKLTLLTLHFPRLRILWCPSPHTAAELFEELKQNKPQPDAATAMAVTADSET 812
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YNA +DF+ K+PG+
Sbjct: 813 LPESEKYNAGPQDFLLKMPGV 833
>gi|406861536|gb|EKD14590.1| MUS38-like protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 934
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 176/314 (56%), Gaps = 43/314 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + +R+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 592 LEEVKPRYIIMYEPDTSFVRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 651
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+EK+NM++ D E P+E+ G RV+VD+REFR
Sbjct: 652 FTKLIKEKSNMSIVMTTDAHGVEDPQEAFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 711
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDYILSP ICVERKSI DLI S + GRLYTQ + M HY
Sbjct: 712 SSLPSLLHGRSMVVVPCMLTVGDYILSPSICVERKSIKDLISSFKDGRLYTQAETMQLHY 771
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S +SD+
Sbjct: 772 KSPMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVSATNATSDL 810
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FP+LR+IWSS PY TA++F LK EP A IG + D+ +
Sbjct: 811 QSKLVLLTLAFPRLRIIWSSSPYQTAEIFESLKTQEPEPDPIAAVRIGLEGGQKAEDQSF 870
Query: 288 NAAIEDFISKLPGM 301
N +D + +PG+
Sbjct: 871 NREPQDMLRTVPGV 884
>gi|302920997|ref|XP_003053194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734134|gb|EEU47481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 916
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 179/313 (57%), Gaps = 43/313 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 575 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQKYLSSVRREKDA 634
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ +M++ D + +PEE+ G RV+VD+REFRS
Sbjct: 635 FTKLIKERASMSLVMTVDP-AEDPEEAFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 693
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDYILSP ICVERKSISDLI S + GRLYTQ + M +HY
Sbjct: 694 SLPSLLHGRSMIIVPCMLTVGDYILSPSICVERKSISDLISSFKDGRLYTQAETMFQHYK 753
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 754 SPMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNMSSDLQ 792
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FPKLR+IWSS PY TA++F LK +EP A G + D+ +N
Sbjct: 793 SKLVLLTLAFPKLRIIWSSSPYQTAEIFELLKTQEEEPDPIAAVRAGLDKDARAEDQAFN 852
Query: 289 AAIEDFISKLPGM 301
+D ++ +PG+
Sbjct: 853 QEPQDMLAIVPGV 865
>gi|322709679|gb|EFZ01255.1| MUS38-like protein [Metarhizium anisopliae ARSEF 23]
Length = 942
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 185/326 (56%), Gaps = 44/326 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+FM YG SVEEQ YL+ +RREK +
Sbjct: 599 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLASVRREKDS 658
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 659 FTKLIKERASMSLVMTVDPHGIEDPQEAFLRTVNTRIAGGGRLAATAQPPRVVVDVREFR 718
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP+ICVERKSISDLI S + GRLYTQ + M +HY
Sbjct: 719 SSLPSLLHGRSIVIVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYTQAETMFQHY 778
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 779 KSPMLLIEFDQNKSFTLE---------------------PFADLSGSLSSVAPTNVSSDL 817
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK DEP A G + D+ +
Sbjct: 818 QSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKAQEDEPDPIAAVQAGLDKDMKAEDQAF 877
Query: 288 NAAIEDFISKLPGMAEWSRARTLNLE 313
N ++ ++K+PG+ +TL LE
Sbjct: 878 NQEPQEMLAKVPGVTP-KNIKTLVLE 902
>gi|395328232|gb|EJF60626.1| hypothetical protein DICSQDRAFT_87823 [Dichomitus squalens LYAD-421
SS1]
Length = 983
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 198/352 (56%), Gaps = 52/352 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ +KP ++ Y ++ IR++EVY+ + + + V+V+FM Y S EE YL+ LRREK++
Sbjct: 630 LQEIKPRFIVMYEPNLEFIRRIEVYRNSNAGLGVRVYFMMYKLSCEEGKYLTGLRREKES 689
Query: 70 FEYLIQEKTNMAVPTEQD------------------GVSTEPEESCGRVIVDMREFRSEL 111
FE LI+E+ +M +P +D G E RVIVDMREFRS L
Sbjct: 690 FERLIKERGSMLMPIHEDRTTAAGEALIKTISTRIAGGRKEASIEPARVIVDMREFRSSL 749
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LLH GL + PVT++VGDYIL+PDICVERKSI DL+ S SGRLYTQ + M HY +P
Sbjct: 750 PSLLHASGLLVLPVTLTVGDYILTPDICVERKSIPDLVSSFNSGRLYTQCELMSAHYKQP 809
Query: 172 LLLIEFDHNKPFELQG-----NYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
+LLIEF+ +K F L+ +Y + A K + Q + + IA++S
Sbjct: 810 ILLIEFEEHKSFSLEAVADAKSYAKTSKYAVK-----------KKQDSRADTATIASQS- 857
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR 286
I +KL LLTL FP++R+IWSS PY TA++F +LK +P A +G +
Sbjct: 858 -IQSKLVLLTLTFPRVRIIWSSSPYATAEIFNDLKTHAAQPDPAKAVLVGAEEDPQAGAG 916
Query: 287 YNAAIEDFISKLPGMAE------WSRARTLN----------LEVLGLNPGQG 322
+NAA E+ + LPG+ SR R++ E+LG+ PG+
Sbjct: 917 FNAAAEELLRSLPGITAKNVKHVVSRVRSVRELCDLEMKDMQELLGVEPGKA 968
>gi|380484259|emb|CCF40111.1| DNA repair protein [Colletotrichum higginsianum]
Length = 828
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 183/317 (57%), Gaps = 49/317 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ Y D A IR+VEVY+ + ++ V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 487 LEEVKPRYIVMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGESVEEQRYLSSVRREKDA 546
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEE----------SCG----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E + G RV+VD+REFR
Sbjct: 547 FTKLIKERASMSLVMTVDPHGAEDPQEVFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 606
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDYILSP+ICVERKSISDLI S + GRLY Q + M +HY
Sbjct: 607 SSLPSLLHGRSMVVVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYAQCESMFQHY 666
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAK--S 225
P+LLIEFD NK F L+ PF +L G+ IA S
Sbjct: 667 KSPMLLIEFDQNKSFTLE---------------------PFADLSGSL---NSIAPTNVS 702
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
SD+ +KL LLTL FPKLR+IWSS PY TA++F LK DEP A G + D
Sbjct: 703 SDLQSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKSQEDEPDPIAAVRAGLDKDMKAED 762
Query: 286 R-YNAAIEDFISKLPGM 301
+ +N ++ + +PG+
Sbjct: 763 QAFNLEPQEMLGSVPGV 779
>gi|449298874|gb|EMC94889.1| hypothetical protein BAUCODRAFT_73572 [Baudoinia compniacensis UAMH
10762]
Length = 954
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 175/314 (55%), Gaps = 44/314 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP VI Y D A IR+VEVY+ + +V+ +FM YG SVEEQ YLS +RREK +
Sbjct: 608 LEEVKPRYVIMYEPDAAFIRRVEVYRSSHGNRQVRCYFMYYGSSVEEQRYLSAVRREKDS 667
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ NMA+ D + +P+ES G RV+VD+REFRS
Sbjct: 668 FTKLIRERGNMALTFTHDTANLDPQESFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 727
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+P+I VERKS+ DLI S GRLY Q + M +HY
Sbjct: 728 SLPSLLHGRQMVVVPCQLTVGDYILTPEIAVERKSVRDLISSFSDGRLYNQAETMLQHYK 787
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD K F L+ LS I L+ SD+
Sbjct: 788 SPMLLIEFDAQKAFTLEPFADLSSAIGTSSLV-----------------------GSDLQ 824
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LL L FP+LR+IWSS PY TA++F ELK+ ++EP A IG +D R +N
Sbjct: 825 SKLVLLCLAFPRLRIIWSSSPYQTAEIFEELKKNQEEPDPIKAVQIGLESGDDPEGRTFN 884
Query: 289 AAIEDFISKLPGMA 302
+D + +PG
Sbjct: 885 QTPQDMLRTVPGTG 898
>gi|367042088|ref|XP_003651424.1| hypothetical protein THITE_68668 [Thielavia terrestris NRRL 8126]
gi|346998686|gb|AEO65088.1| hypothetical protein THITE_68668 [Thielavia terrestris NRRL 8126]
Length = 943
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 183/317 (57%), Gaps = 48/317 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ Y D A IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 600 LEEVKPKYIVMYEPDAAFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSTVRREKDA 659
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M+V D E P+E+ G RV+VD+REFR
Sbjct: 660 FTKLIKERASMSVVMTTDAQGVEDPQEAFLRTINTRIAGGGKLAATAQPPRVVVDVREFR 719
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M +HY
Sbjct: 720 SSLPSLLHGRSMIIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYNQCETMFQHY 779
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P+LLIEFD NK F L+ PF +L G+ A ++D
Sbjct: 780 KNPMLLIEFDQNKSFTLE---------------------PFADLSGSLASVSASNAGAND 818
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP---SAEVASSIGQTPNEDYT 284
+ K+ LLTL FP LR+IWSS PY TA++F LK +EP +A A G P E+
Sbjct: 819 LQGKIVLLTLAFPNLRIIWSSSPYETAEIFERLKAQEEEPDPIAAVRAGLDGDAPAEEQV 878
Query: 285 DRYNAAIEDFISKLPGM 301
+NA ++ ++ +PG+
Sbjct: 879 --FNAVPQEMLAAVPGV 893
>gi|403158245|ref|XP_003890826.1| hypothetical protein PGTG_20630 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163738|gb|EHS62509.1| hypothetical protein PGTG_20630 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1039
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 170/288 (59%), Gaps = 39/288 (13%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L L+P+ VI Y DV +R+VE ++ E+ VK +F+ Y ESVEEQ YLS++RREK
Sbjct: 651 SVLEELRPSHVIMYEPDVGFVRRVECFRLRHPELNVKPYFLMYSESVEEQKYLSNIRREK 710
Query: 68 KAFEYLIQEKTNMAVPTE---------QDGV--STEPEESCGR--------VIVDMREFR 108
++FE LI+E + M +P E Q+G+ + ++ G+ VIVD+REFR
Sbjct: 711 ESFERLIRENSTMVIPLEVEARPGEISQEGIVQAISSRQAGGKALKVGMPKVIVDVREFR 770
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH IEP T+ +GDYILSP++CVERKSI+DLI S SGRLY Q + M HY
Sbjct: 771 SSLPSLLHAGNFVIEPTTLLIGDYILSPEMCVERKSIADLIQSFNSGRLYQQCEMMSAHY 830
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD K F L+ Y E +GN + A SD+
Sbjct: 831 KTPILLIEFDEKKSFTLE-TYK-------------------ETRGNKTSTITAAPTDSDL 870
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
AKL LLTL F KLRLIWSS P TA++F +LK EP AE AS +G
Sbjct: 871 QAKLVLLTLTFKKLRLIWSSSPSATAEIFRDLKLTHPEPDAETASLVG 918
>gi|358331704|dbj|GAA27627.2| DNA excision repair protein ERCC-4 [Clonorchis sinensis]
Length = 987
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 190/339 (56%), Gaps = 42/339 (12%)
Query: 2 FAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQ-------CAQSEVKVK---------- 44
F + L+ L SL+P VI Y V+ IR++EV+ C + +
Sbjct: 569 FGRRLAYVLDSLQPRHVILYEPRVSWIREIEVHSARRHAQACGSVGAEARESTSSGPMVT 628
Query: 45 ---VFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTE---------QDGVSTE 92
V FM Y SVEEQ YL+ LRRE++AFE LIQ +++ +P + Q G
Sbjct: 629 PLNVHFMVYENSVEEQRYLTQLRREREAFESLIQLSSHIVIPKDALLPASFQGQGGSDFG 688
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+ RVIVDMREFRSELP LLH++GL +EP+T+SV DYIL+P +CVERKS+SDLIGSL
Sbjct: 689 QQRQQPRVIVDMREFRSELPALLHRKGLKVEPMTLSVSDYILAPHLCVERKSVSDLIGSL 748
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL- 211
+SGRLY Q M RHY P+LLIEF + P ++ G+ + + D F L
Sbjct: 749 KSGRLYQQCTAMSRHYPNPVLLIEF--SLPTKVTGSALARGGLGYR----GDGVLGFSLY 802
Query: 212 QGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEV 271
G + + + + +KL LLT+HFP LRL WS PY TA+LF ELKQGR EP+ E
Sbjct: 803 TGRHSIHSGTELNAHHLLSKLTLLTIHFPNLRLFWSISPYCTAELFTELKQGRAEPTTEK 862
Query: 272 ASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTL 310
G+ + + +N D + +LPG++ W R +
Sbjct: 863 LPQDGE-----HLEDHNVEAVDMLLRLPGVS-WKNYRRI 895
>gi|331212581|ref|XP_003307560.1| rad16 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 1153
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 170/288 (59%), Gaps = 39/288 (13%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L L+P+ VI Y DV +R+VE ++ E+ VK +F+ Y ESVEEQ YLS++RREK
Sbjct: 660 SVLEELRPSHVIMYEPDVGFVRRVECFRLRHPELNVKPYFLMYSESVEEQKYLSNIRREK 719
Query: 68 KAFEYLIQEKTNMAVPTE---------QDGV--STEPEESCGR--------VIVDMREFR 108
++FE LI+E + M +P E Q+G+ + ++ G+ VIVD+REFR
Sbjct: 720 ESFERLIRENSTMVIPLEVEARPGEISQEGIVQAISSRQAGGKALKVGMPKVIVDVREFR 779
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH IEP T+ +GDYILSP++CVERKSI+DLI S SGRLY Q + M HY
Sbjct: 780 SSLPSLLHAGNFVIEPTTLLIGDYILSPEMCVERKSIADLIQSFNSGRLYQQCEMMSAHY 839
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD K F L+ Y E +GN + A SD+
Sbjct: 840 KTPILLIEFDEKKSFTLE-TYK-------------------ETRGNKTSTITAAPTDSDL 879
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
AKL LLTL F KLRLIWSS P TA++F +LK EP AE AS +G
Sbjct: 880 QAKLVLLTLTFKKLRLIWSSSPSATAEIFRDLKLTHPEPDAETASLVG 927
>gi|345562923|gb|EGX45931.1| hypothetical protein AOL_s00112g120 [Arthrobotrys oligospora ATCC
24927]
Length = 904
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 180/318 (56%), Gaps = 48/318 (15%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK-VKVFFMQYGESVEEQAYLSDLRRE 66
S L ++P VI Y+ + + IR +EVY+ + S ++ +FM YG SVEEQ YLS +R+E
Sbjct: 566 SLLEEIQPQDVIMYSPNASFIRHIEVYRSSHSNSNDIRAYFMYYGCSVEEQTYLSTVRKE 625
Query: 67 KKAFEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMR 105
K AF LI++K++MA D S E P++ G RV+VD+R
Sbjct: 626 KDAFTNLIRQKSSMATTLTVDSFSGEDPQDKFLRTLNTRIAGGGRLIATAEPPRVVVDVR 685
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP LLH + + I P +++VGDYILSP+ICVERKS+ DLI S + GRLY+Q + M
Sbjct: 686 EFRSSLPSLLHGKNITIVPCSLTVGDYILSPNICVERKSVKDLISSFKDGRLYSQAEAML 745
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
Y +P+LL+EFD +K F L+ PF L+ AA
Sbjct: 746 SGYQEPVLLVEFDQDKSFSLE---------------------PFT-----DLNSTAAAAR 779
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
SD+ AKL LLTLHFPKLR+IWSS PY TA++F ELK+ EP A SIG ED
Sbjct: 780 SDLQAKLVLLTLHFPKLRIIWSSSPYQTAEIFDELKKNEHEPDPLKAVSIGLADGEDGYS 839
Query: 286 RYNAAIEDFISKLPGMAE 303
Y + + +PG+ E
Sbjct: 840 TYAPTPMEILKAVPGITE 857
>gi|392565718|gb|EIW58895.1| hypothetical protein TRAVEDRAFT_72315 [Trametes versicolor
FP-101664 SS1]
Length = 980
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 201/360 (55%), Gaps = 53/360 (14%)
Query: 2 FAQDLSSK-LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYL 60
+A D + L+ +KP ++ Y ++ IR++EVY+ + + V+V+FM Y S EE YL
Sbjct: 624 YADDTDDQVLQEVKPRFIVMYEPNLEFIRRIEVYRNSNPGLGVRVYFMMYKMSCEEGKYL 683
Query: 61 SDLRREKKAFEYLIQEKTNMAVPTEQD----------------------GVSTEPEESCG 98
+ LRREK++FE LI+E+ M +P +D VSTEP
Sbjct: 684 TGLRREKESFERLIRERGTMLMPIFEDRTSAAGEALIKTISTRIAGGRKEVSTEP----A 739
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RVIVDMREFRS LP LLH GL + PVT++VGDYIL+PDICVERKSI DL+ S SGRLY
Sbjct: 740 RVIVDMREFRSSLPSLLHASGLLVLPVTLTVGDYILTPDICVERKSIPDLVSSFSSGRLY 799
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
TQ + M HY +P+LLIEF+ +K F L+ D+ K + + P + G+ S
Sbjct: 800 TQCELMSAHYKQPILLIEFEEHKSFSLEA----VADV--KSYAKSNKFPPKKKPGDAPAS 853
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT 278
AA+S I +KL LLTL FP++R++WSS P+ TA++F +LK +P A +G
Sbjct: 854 S--AAQS--IQSKLVLLTLTFPRVRILWSSSPFATAEVFNDLKTNMAQPDPGKAVLVGAE 909
Query: 279 PNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNL----------------EVLGLNPGQG 322
+ D NAA E+ + LPG+ + +N E+LG+ PG+
Sbjct: 910 EDPDAGAGVNAAAEELLRSLPGVTAKNVKHVMNRVKSVAELCELGLGQVQEILGVEPGKA 969
>gi|67903452|ref|XP_681982.1| hypothetical protein AN8713.2 [Aspergillus nidulans FGSC A4]
gi|40741072|gb|EAA60262.1| hypothetical protein AN8713.2 [Aspergillus nidulans FGSC A4]
Length = 942
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 171/289 (59%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 566 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFMYYGGSVEEQRYLSAVRREKDA 625
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D + +P+E S RV+VD+REFRS
Sbjct: 626 FTKLIKEKSNMAVTLTHDKSAEDPQEQFLRTVNTRIAGGGRLTATASPPRVVVDVREFRS 685
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P I+VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 686 ALPSLLHGNNMVIVPCQITVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMTQHYK 745
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL +F + + + S + S+ +
Sbjct: 746 SPLLLIEFDENKSFTFDA-FTSATTPGTTFLTDFGFSSSGTVTTSLSSSSALINPSAPKS 804
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 805 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNAPEPDPVRAVQIG 853
>gi|340975666|gb|EGS22781.1| hypothetical protein CTHT_0012560 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 957
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 171/297 (57%), Gaps = 45/297 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 599 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLSSVRREKDA 658
Query: 70 FEYLIQEKTNMAVP--TEQDGVSTEPEES---------CG-----------RVIVDMREF 107
F LI+E+ M++ T+ G +P+E+ G R++VD+REF
Sbjct: 659 FTKLIKERATMSLTLTTDPHGAPDDPQEAFLRTINTRIAGGGKLTATSEPPRIVVDVREF 718
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH RG+ I P ++VGDYILS D+CVERKS+SDLI SL +GRLY+Q + M +H
Sbjct: 719 RSSLPSLLHGRGVVIVPCMLTVGDYILSRDMCVERKSVSDLISSLNNGRLYSQCEAMFQH 778
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y PLLLIEFD NK F L+ PF L AA D
Sbjct: 779 YKTPLLLIEFDQNKSFTLE---------------------PFADLSAVTLPSATAA--PD 815
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
+ +KL LLTL FPKLR+IWSS PY TA++F LK EP A G ++D T
Sbjct: 816 LQSKLVLLTLAFPKLRIIWSSSPYETAEIFERLKSNEPEPDPIAAVRAGLDDSDDLT 872
>gi|259483093|tpe|CBF78182.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 985
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 171/289 (59%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFMYYGGSVEEQRYLSAVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D + +P+E S RV+VD+REFRS
Sbjct: 669 FTKLIKEKSNMAVTLTHDKSAEDPQEQFLRTVNTRIAGGGRLTATASPPRVVVDVREFRS 728
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P I+VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 729 ALPSLLHGNNMVIVPCQITVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMTQHYK 788
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL +F + + + S + S+ +
Sbjct: 789 SPLLLIEFDENKSFTFDA-FTSATTPGTTFLTDFGFSSSGTVTTSLSSSSALINPSAPKS 847
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 848 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNAPEPDPVRAVQIG 896
>gi|322701377|gb|EFY93127.1| MUS38-like protein [Metarhizium acridum CQMa 102]
Length = 1227
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 180/326 (55%), Gaps = 44/326 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 884 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLSSVRREKDS 943
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC---------------------GRVIVDMREFR 108
F LI+E+ +M++ D E + RV+VD+REFR
Sbjct: 944 FTKLIKERASMSLVMTVDPHGIEDAQEAFLRTVNTRIAGGGRLAATAQPPRVVVDVREFR 1003
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP+ICVERKSISDLI S + GRLYTQ + M +HY
Sbjct: 1004 SSLPSLLHGRSIIIVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYTQAETMFQHY 1063
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 1064 RSPMLLIEFDQNKSFTLE---------------------PFADLSGSLSSVAPTNVSSDL 1102
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK DEP A G + D+ +
Sbjct: 1103 QSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKAQEDEPDPIAAVQAGLDKDMKAEDQAF 1162
Query: 288 NAAIEDFISKLPGMAEWSRARTLNLE 313
N ++ ++ +PG+ +TL LE
Sbjct: 1163 NQEPQEMLALVPGVTP-KNIKTLVLE 1187
>gi|336463252|gb|EGO51492.1| hypothetical protein NEUTE1DRAFT_125187 [Neurospora tetrasperma
FGSC 2508]
Length = 960
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 184/328 (56%), Gaps = 57/328 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 602 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 661
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC----------------------GRVIVDMREF 107
F LI+E+ +M++ D E ES RV+VD+REF
Sbjct: 662 FTKLIRERASMSIVMTTDSHGVEDPESAFLRTINTRIAGGGKLAKATAQPPRVVVDVREF 721
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M +H
Sbjct: 722 RSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQH 781
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSS 226
Y P+LLIEFD NK F L+ PF +L G+ A ++
Sbjct: 782 YRNPMLLIEFDQNKSFTLE---------------------PFADLSGSLRSVNPENAGAN 820
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSI--GQTPNED 282
D+ +K+ LLTL FPKLR+IWSS PY TA++F LK +EP A V + + G++P +
Sbjct: 821 DLQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKALEEEPDPVAAVRAGLGEGESPEDG 880
Query: 283 YTD---------RYNAAIEDFISKLPGM 301
+ +N ++ + K+PG+
Sbjct: 881 VNEGKGAVNGGSTFNMEAQEMLGKVPGV 908
>gi|164424249|ref|XP_964627.2| hypothetical protein NCU07440 [Neurospora crassa OR74A]
gi|157070437|gb|EAA35391.2| hypothetical protein NCU07440 [Neurospora crassa OR74A]
Length = 957
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 184/328 (56%), Gaps = 57/328 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 599 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 658
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC----------------------GRVIVDMREF 107
F LI+E+ +M++ D E ES RV+VD+REF
Sbjct: 659 FTKLIRERASMSIVMTTDSHGVEDPESAFLRTINTRIAGGGKLAKATAQPPRVVVDVREF 718
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M +H
Sbjct: 719 RSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQH 778
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSS 226
Y P+LLIEFD NK F L+ PF +L G+ A ++
Sbjct: 779 YRNPMLLIEFDQNKSFTLE---------------------PFADLSGSLRSVNPENAGAN 817
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSI--GQTPNED 282
D+ +K+ LLTL FPKLR+IWSS PY TA++F LK +EP A V + + G++P +
Sbjct: 818 DLQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKALEEEPDPVAAVRAGLGEGESPEDG 877
Query: 283 YTD---------RYNAAIEDFISKLPGM 301
+ +N ++ + K+PG+
Sbjct: 878 VNEGKGAVNGGSTFNMEAQEMLGKVPGV 905
>gi|350297545|gb|EGZ78522.1| DNA repair protein [Neurospora tetrasperma FGSC 2509]
Length = 954
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 184/328 (56%), Gaps = 57/328 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 596 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 655
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC----------------------GRVIVDMREF 107
F LI+E+ +M++ D E ES RV+VD+REF
Sbjct: 656 FTKLIRERASMSIVMTTDSHGVEDPESAFLRTINTRIAGGGKLAKATAQPPRVVVDVREF 715
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M +H
Sbjct: 716 RSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQH 775
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSS 226
Y P+LLIEFD NK F L+ PF +L G+ A ++
Sbjct: 776 YRNPMLLIEFDQNKSFTLE---------------------PFADLSGSLRSVNPENAGAN 814
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSI--GQTPNED 282
D+ +K+ LLTL FPKLR+IWSS PY TA++F LK +EP A V + + G++P +
Sbjct: 815 DLQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKALEEEPDPVAAVRAGLGEGESPEDG 874
Query: 283 YTD---------RYNAAIEDFISKLPGM 301
+ +N ++ + K+PG+
Sbjct: 875 VNEGKGAVNGGSTFNMEAQEMLGKVPGV 902
>gi|296823836|ref|XP_002850507.1| DNA repair protein rad16 [Arthroderma otae CBS 113480]
gi|238838061|gb|EEQ27723.1| DNA repair protein rad16 [Arthroderma otae CBS 113480]
Length = 971
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 171/289 (59%), Gaps = 33/289 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + + V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 596 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQDRNVRVYFMYYGESVEEQRYLSAVRREKDA 655
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI EK MA+ D +P+E GR V+VD+REFRS
Sbjct: 656 FTKLIHEKGTMALKLVHDKSLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 715
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 716 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 775
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S F+ + + S ++ ++ +
Sbjct: 776 QPMLLIEFDQNKAFTFDA--FTSSATPTSFVAD---------NATSFGSGNMINPANPRS 824
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 825 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNSEPDPIRAVQIG 873
>gi|71018213|ref|XP_759337.1| hypothetical protein UM03190.1 [Ustilago maydis 521]
gi|46099187|gb|EAK84420.1| hypothetical protein UM03190.1 [Ustilago maydis 521]
Length = 1028
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 205/398 (51%), Gaps = 82/398 (20%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P VI Y+ D A +R+VEVY+ V V+V+FM Y +SVEEQ YLS LRREK++
Sbjct: 676 LQELRPRFVIMYDPDPAFVRRVEVYRSTNQGVGVRVYFMIYSDSVEEQRYLSALRREKES 735
Query: 70 FEYLIQEKTNMAVPTEQDG-----------VSTEPEESCG----------RVIVDMREFR 108
FE LI+EK+ MA+P DG + T G R+IVDMREFR
Sbjct: 736 FERLIREKSMMALPLSADGRPIAEDADQRFLRTISSRVAGGQRSATAEPPRIIVDMREFR 795
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + + P T+ VGDY+L+P +CVERKS++DL+ S SGRLY Q + MC HY
Sbjct: 796 SSLPSMLHAADIQVVPCTLQVGDYVLTPTMCVERKSLTDLVQSFNSGRLYAQCELMCVHY 855
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD +K F L+ + D A N EL D+
Sbjct: 856 QHPILLIEFDQDKSFSLKS----TNDGKAT-----GRNSGTEL---------------DV 891
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYN 288
AKL LLTL FP+LR+IWSS P+ T+ +F +LKQ DEP A + +G D
Sbjct: 892 QAKLVLLTLAFPRLRIIWSSSPFATSDIFADLKQNFDEPDAAKVALVG-------LDDIL 944
Query: 289 AAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGR 348
A S+ A+W ++ + L P +L RA
Sbjct: 945 EAEGGITSETTKRADW---QSSSEHSFNLGP-------QDLLRA---------------- 978
Query: 349 ESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLV 386
P VT+KN ++++ + LC ++++EL L+
Sbjct: 979 ----LPGVTTKNFRYIMSQVRDISDLCNMTQEELGELI 1012
>gi|378730855|gb|EHY57314.1| DNA excision repair protein ERCC-4 [Exophiala dermatitidis
NIH/UT8656]
Length = 949
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 183/321 (57%), Gaps = 45/321 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y+ IR+VEVY+ + S+ V+ +FM YG SVEEQ YLS +RREK A
Sbjct: 608 LEELRPKYIIMYSPSADFIRRVEVYRSSHSDRNVRAYFMYYGGSVEEQRYLSAVRREKDA 667
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+E+ +MAV V +P+E+ R V+VD+REFRS
Sbjct: 668 FTKLIKERGSMAVTLTDSTV--DPQEAFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 725
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDY+LSP ICVERKS+ DLI S ++GRL+ Q + M ++Y
Sbjct: 726 ALPSLLHGRSMQIVPCQLTVGDYVLSPQICVERKSVRDLIASFKNGRLFNQAETMLQYYK 785
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSDI 228
LLIEFDHNK F L PF +L L A++ D+
Sbjct: 786 YSFLLIEFDHNKSFTLD---------------------PFADLTSVSTLKMGPDAETKDL 824
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FP+L++IWSS PY TA++F ELK+ ++EP A IG +ED D+ +
Sbjct: 825 QSKLVLLTLAFPRLKVIWSSSPYQTAEIFEELKKQQEEPDPLKAVQIGLVDDEDPDDKTF 884
Query: 288 NAAIEDFISKLPGMAEWSRAR 308
N +D + +PG+ + +R
Sbjct: 885 NTVPQDLLRTIPGVTPKNASR 905
>gi|83772633|dbj|BAE62761.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391873497|gb|EIT82527.1| structure-specific endonuclease ERCC1-XPF, catalytic component
XPF/ERCC4 [Aspergillus oryzae 3.042]
Length = 896
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 167/289 (57%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 520 LEEVRPRYIIMYEPDSAFIRRVEVYRSSHVGRNVRVYFMYYGGSVEEQRYLSAVRREKDS 579
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK NMAV D +P+E S RV+VD+REFRS
Sbjct: 580 FTKLIKEKGNMAVTLTHDKGFEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 639
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKSI DLI SL++GRLY Q + M +HY
Sbjct: 640 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSIRDLITSLRNGRLYNQAETMLQHYK 699
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL ++ + S + SS +
Sbjct: 700 NPLLLIEFDQNKSFTFDA-FASATTPGTTFLTDYGFSSSGTATTTLSASSSLVNPSSPKS 758
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 759 AQHLLVLLTLAFPRLKVIWSSSPYQTAEIFAELKKNNPEPDPIRAVQIG 807
>gi|340521650|gb|EGR51884.1| DNA repair protein [Trichoderma reesei QM6a]
Length = 931
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 178/314 (56%), Gaps = 43/314 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ VKV+F+ YG SVEEQ YLS +RREK A
Sbjct: 588 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVKVYFLYYGGSVEEQRYLSSVRREKDA 647
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 648 FTKLIKERASMSLVMTVDPHGIEDPQEAFLRTVNTRIAGGGKLAATAEPPRVVVDVREFR 707
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M +HY
Sbjct: 708 SSLPSLLHGRSMVVVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQHY 767
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 768 KNPMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNVSSDL 806
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK EP A G + D+ +
Sbjct: 807 QSKLVLLTLAFPKLRIIWSSSPYETAEIFASLKTLEPEPDPIAAVQAGLDKDSRVEDQVF 866
Query: 288 NAAIEDFISKLPGM 301
N ++ +S +PG+
Sbjct: 867 NQEPQEMLSIVPGV 880
>gi|413926650|gb|AFW66582.1| hypothetical protein ZEAMMB73_828091 [Zea mays]
Length = 986
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 184/321 (57%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ S K+KV+F+ Y +S E Q Y S +RRE +AFE L
Sbjct: 646 KPSVIIVYHPDITFVREIEVYKAENSSRKLKVYFLFYEDSTEVQKYESSIRRENEAFESL 705
Query: 74 IQEKTNMAVPTEQDG------VSTEPE------------------ESCGRVIVDMREFRS 109
I++K+ M +P +QDG V+ EPE E +VIVDMREF S
Sbjct: 706 IRQKSLMMIPVDQDGRCIGPTVANEPEPPLCQNSITRKAGGKKAPEKEMQVIVDMREFMS 765
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 766 SLPNVLHQKGIRIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMARYYK 825
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 826 IPVLLIEFSQDKS--------------------------FSFQSANEIGDDVSP--TNII 857
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR+IWS + TA++F LK +DEP + A+ +G P+ED
Sbjct: 858 SKLSLLVLHFPRLRIIWSRSLHATAEIFMSLKTNQDEPDEKKATRVG-VPSEDGIVEDDV 916
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
++ YN + +F+ +LPG+ +
Sbjct: 917 RSENYNTSAIEFLRRLPGVTD 937
>gi|238499435|ref|XP_002380952.1| DNA repair protein RAD1, putative [Aspergillus flavus NRRL3357]
gi|220692705|gb|EED49051.1| DNA repair protein RAD1, putative [Aspergillus flavus NRRL3357]
Length = 978
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 167/289 (57%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 602 LEEVRPRYIIMYEPDSAFIRRVEVYRSSHVGRNVRVYFMYYGGSVEEQRYLSAVRREKDS 661
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK NMAV D +P+E S RV+VD+REFRS
Sbjct: 662 FTKLIKEKGNMAVTLTHDKGFEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 721
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKSI DLI SL++GRLY Q + M +HY
Sbjct: 722 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSIRDLITSLRNGRLYNQAETMLQHYK 781
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL ++ + S + SS +
Sbjct: 782 NPLLLIEFDQNKSFTFDA-FASATTPGTTFLTDYGFSSSGTATTTLSASSSLVNPSSPKS 840
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 841 AQHLLVLLTLAFPRLKVIWSSSPYQTAEIFAELKKNNPEPDPIRAVQIG 889
>gi|358384839|gb|EHK22436.1| hypothetical protein TRIVIDRAFT_29672 [Trichoderma virens Gv29-8]
Length = 929
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 177/314 (56%), Gaps = 43/314 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 586 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 645
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 646 FTKLIKERASMSLVMTVDPHGIEDPQEAFLRTVNTRIAGGGKLAATAEPPRVVVDVREFR 705
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M +HY
Sbjct: 706 SSLPSLLHGRSMVVVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQHY 765
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 766 KNPMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNVSSDL 804
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK EP A G + D+ +
Sbjct: 805 QSKLVLLTLAFPKLRIIWSSSPYETAEIFASLKTLEHEPDPIAAVQAGLDKDSKVEDQVF 864
Query: 288 NAAIEDFISKLPGM 301
N ++ +S PG+
Sbjct: 865 NQEPQEMLSIAPGV 878
>gi|317033464|ref|XP_001395842.2| DNA repair protein RAD1 [Aspergillus niger CBS 513.88]
Length = 948
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 170/291 (58%), Gaps = 29/291 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 575 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFIYYGGSVEEQRYLSAVRREKDS 634
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D +P+E S RV++D+REFRS
Sbjct: 635 FTKLIKEKSNMAVTITHDKSQVDPQEQFLRTVNTRIAGGGRLAATASPPRVVIDVREFRS 694
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 695 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMLQHYK 754
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD--IAAKSSD 227
PLLLIEFD NK F + + FL +F F G LS + + SS
Sbjct: 755 NPLLLIEFDQNKSFTFDA-FASATTPGTTFLTDFG----FSSSGTSTLSANSSLVNPSSP 809
Query: 228 ITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A G
Sbjct: 810 KSAQHLLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQTG 860
>gi|315055791|ref|XP_003177270.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893]
gi|311339116|gb|EFQ98318.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893]
Length = 973
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 176/308 (57%), Gaps = 33/308 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + E V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 598 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQERNVRVYFMYYGESVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI E+ MA+ D +P+E GR V+VD+REFRS
Sbjct: 658 FTKLIHERGTMAMKLVHDKGLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 717
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 718 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 777
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S F+ + + S ++ ++ +
Sbjct: 778 QPMLLIEFDQNKAFTFDA--FTSSATPTSFVAD---------NATSFGSGNMINPTNPRS 826
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A +G N D
Sbjct: 827 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNSEPDPIRAVQVGLDFNISGLDTS 886
Query: 288 NAAIEDFI 295
+ D I
Sbjct: 887 DGQPADMI 894
>gi|171684915|ref|XP_001907399.1| hypothetical protein [Podospora anserina S mat+]
gi|170942418|emb|CAP68070.1| unnamed protein product [Podospora anserina S mat+]
Length = 943
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 195/399 (48%), Gaps = 91/399 (22%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK
Sbjct: 594 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSTVRREKDN 653
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG------------RVIVDMREFR 108
F LI+E+ +M++ D + +P+E+ G RV+VD+REFR
Sbjct: 654 FTKLIKERASMSLVMTVDSSTEDPQEAFLRTINTRIAGGGKLSTATAEPPRVVVDVREFR 713
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP+IC+ERKS+SDLI S +GRLY+Q + M +HY
Sbjct: 714 SSLPSLLHGRSMVIVPCMLTVGDYILSPNICIERKSVSDLISSFSNGRLYSQCETMFQHY 773
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P+LLIEFD NK F L+ PF +L G+ A D
Sbjct: 774 QNPMLLIEFDQNKSFTLE---------------------PFADLSGSISSLNSANAGEKD 812
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
+ +K+ LLTL FPKLR+IWSS PY TA++F LK EP A G +D
Sbjct: 813 LQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKSQEKEPDPIAAVRAGLNDGDD----- 867
Query: 288 NAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPG 347
V G GQG F P PG
Sbjct: 868 --------------------------VEGSQQGQGAAF-----------------NPEPG 884
Query: 348 RESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLV 386
P VT KN + + ++ + + +EL +LV
Sbjct: 885 EMLAAVPGVTPKNIGNITAKMENIKEVANATVEELSALV 923
>gi|134080573|emb|CAK41241.1| unnamed protein product [Aspergillus niger]
Length = 977
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 170/291 (58%), Gaps = 29/291 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 604 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFIYYGGSVEEQRYLSAVRREKDS 663
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D +P+E S RV++D+REFRS
Sbjct: 664 FTKLIKEKSNMAVTITHDKSQVDPQEQFLRTVNTRIAGGGRLAATASPPRVVIDVREFRS 723
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 724 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMLQHYK 783
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD--IAAKSSD 227
PLLLIEFD NK F + + FL +F F G LS + + SS
Sbjct: 784 NPLLLIEFDQNKSFTFDA-FASATTPGTTFLTDFG----FSSSGTSTLSANSSLVNPSSP 838
Query: 228 ITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A G
Sbjct: 839 KSAQHLLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQTG 889
>gi|302499611|ref|XP_003011801.1| hypothetical protein ARB_02030 [Arthroderma benhamiae CBS 112371]
gi|291175354|gb|EFE31161.1| hypothetical protein ARB_02030 [Arthroderma benhamiae CBS 112371]
Length = 883
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/287 (44%), Positives = 169/287 (58%), Gaps = 29/287 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + E V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 508 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQERNVRVYFMYYGESVEEQRYLSAVRREKDA 567
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI E+ MA+ D +P+E R V+VD+REFRS
Sbjct: 568 FTKLIHERGTMAMQLVHDKSHEDPQEQFLRTVNTRIAGGGRLAGTAAPPTVVVDVREFRS 627
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 628 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 687
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S ++ D+ F G+ + KS+
Sbjct: 688 QPMLLIEFDQNKAFTFDA--FTSSATPTSYVA--DNATSF---GSGNMINPANPKSAQ-- 738
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS PY TA++F ELK+ EP A +G
Sbjct: 739 HLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNSEPDPIKAVQVG 785
>gi|413926648|gb|AFW66580.1| hypothetical protein ZEAMMB73_828091 [Zea mays]
Length = 1445
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 184/321 (57%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ S K+KV+F+ Y +S E Q Y S +RRE +AFE L
Sbjct: 620 KPSVIIVYHPDITFVREIEVYKAENSSRKLKVYFLFYEDSTEVQKYESSIRRENEAFESL 679
Query: 74 IQEKTNMAVPTEQDG------VSTEPE------------------ESCGRVIVDMREFRS 109
I++K+ M +P +QDG V+ EPE E +VIVDMREF S
Sbjct: 680 IRQKSLMMIPVDQDGRCIGPTVANEPEPPLCQNSITRKAGGKKAPEKEMQVIVDMREFMS 739
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 740 SLPNVLHQKGIRIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMARYYK 799
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 800 IPVLLIEFSQDKS--------------------------FSFQSANEIGDDVSP--TNII 831
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR+IWS + TA++F LK +DEP + A+ +G P+ED
Sbjct: 832 SKLSLLVLHFPRLRIIWSRSLHATAEIFMSLKTNQDEPDEKKATRVG-VPSEDGIVEDDV 890
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
++ YN + +F+ +LPG+ +
Sbjct: 891 RSENYNTSAIEFLRRLPGVTD 911
>gi|350637138|gb|EHA25496.1| hypothetical protein ASPNIDRAFT_53960 [Aspergillus niger ATCC 1015]
Length = 970
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 170/291 (58%), Gaps = 29/291 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 597 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFIYYGGSVEEQRYLSAVRREKDS 656
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D +P+E S RV++D+REFRS
Sbjct: 657 FTKLIKEKSNMAVTITHDKSQVDPQEQFLRTVNTRIAGGGRLAATASPPRVVIDVREFRS 716
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 717 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMLQHYK 776
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD--IAAKSSD 227
PLLLIEFD NK F + + FL +F F G LS + + SS
Sbjct: 777 NPLLLIEFDQNKSFTFDA-FASATTPGTTFLTDFG----FSSSGTSTLSANSSLVNPSSP 831
Query: 228 ITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A G
Sbjct: 832 KSAQHLLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQTG 882
>gi|242037303|ref|XP_002466046.1| hypothetical protein SORBIDRAFT_01g050650 [Sorghum bicolor]
gi|241919900|gb|EER93044.1| hypothetical protein SORBIDRAFT_01g050650 [Sorghum bicolor]
Length = 1032
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 183/321 (57%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ S K+KV+F+ Y +S E Q + S +RRE +AFE L
Sbjct: 692 KPSVIIVYHPDITFVREIEVYKAENSSKKLKVYFLFYEDSTEVQKFESSIRRENEAFESL 751
Query: 74 IQEKTNMAVPTEQDG------VSTEPE------------------ESCGRVIVDMREFRS 109
I++K+ M +P +QDG V+ EPE E +VIVDMREF S
Sbjct: 752 IRQKSLMMIPVDQDGHCIGPTVANEPEPLLCQNSITRKAGGKKAPEKEMQVIVDMREFMS 811
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 812 SLPNVLHQKGIRIVPVTLEVGDYVLSPSICVERKSIADLFQSFASGRLYNQVETMARYYK 871
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 872 IPVLLIEFSQDKS--------------------------FSFQSANEIGDDVSP--TNII 903
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR+IWS + TA++F LK +DEP + A+ +G P+ED
Sbjct: 904 SKLSLLVLHFPRLRIIWSRSLHATAEIFMSLKTNQDEPDEKKATRVG-VPSEDGIVEDDV 962
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
++ YN +F+ +LPG+ +
Sbjct: 963 RSENYNTPAIEFLRRLPGVTD 983
>gi|164660022|ref|XP_001731134.1| hypothetical protein MGL_1317 [Malassezia globosa CBS 7966]
gi|159105034|gb|EDP43920.1| hypothetical protein MGL_1317 [Malassezia globosa CBS 7966]
Length = 915
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 185/327 (56%), Gaps = 56/327 (17%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQYGESVEEQAYLSDLRRE 66
S L+ L+P VI Y+ + +RQVE+Y+ Q + ++K++F+ Y +SVEEQ YL+ LRRE
Sbjct: 565 SLLQELRPRYVIMYDPNAQFVRQVEIYRATQEKTPELKIYFLLYTDSVEEQMYLAALRRE 624
Query: 67 KKAFEYLIQEKTNMAVPTEQDGVSTE---------------------PEESCGRVIVDMR 105
K +FE LI+EK MA+P DG E P V+VDMR
Sbjct: 625 KDSFERLIREKATMAIPLTVDGTPAEDADQRMVRMLSTRVAGGQRALPSVRPPSVVVDMR 684
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP LLH GL + P T+ VGDY++S ++CVERKS+ DL+ SL SGRLYTQ + M
Sbjct: 685 EFRSSLPSLLHAAGLQVIPCTLQVGDYVISSEMCVERKSLMDLVQSLTSGRLYTQCESMS 744
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
HY P+LLIEFDH + F QG P G+ +R I +++
Sbjct: 745 MHYPYPILLIEFDHERAFTFQG---------------MGETNP---TGS---ARPITSRT 783
Query: 226 S----DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
S D+ +KL LLTL FP+LRLIWSS PY + ++ +LKQ DEP A++IG +
Sbjct: 784 SSLDLDLQSKLALLTLSFPRLRLIWSSSPYASVEILSDLKQNYDEPDPAHAAAIGL---D 840
Query: 282 DYTDRY------NAAIEDFISKLPGMA 302
D ++R+ +A + + +PG+
Sbjct: 841 DLSERHSQEMAIHATSMEMLRAMPGVT 867
>gi|388854501|emb|CCF51888.1| related to RAD1-component of the nucleotide excision repairosome
[Ustilago hordei]
Length = 963
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 169/288 (58%), Gaps = 45/288 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P VI Y+ D A +R+VE+Y+ V V+V+F+ Y +SVEEQ YLS LRREK++
Sbjct: 611 LQELRPRFVIMYDPDPAFVRRVEIYRSTNPGVGVRVYFLIYADSVEEQRYLSALRREKES 670
Query: 70 FEYLIQEKTNMAVPTEQDG-----------VSTEPEESCG----------RVIVDMREFR 108
FE LI+EK+ MA+P DG + T G R+IVDMREFR
Sbjct: 671 FERLIREKSMMALPLSADGRPIAEDADQRFLRTISSRVAGGQRSATAEPPRIIVDMREFR 730
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + + P T+ VGDY+L+P +CVERKS+SDLI S SGRLYTQ + MC +Y
Sbjct: 731 SSLPSMLHAADIQVIPCTLQVGDYVLTPTMCVERKSLSDLIQSFNSGRLYTQCELMCVYY 790
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD +K F L+ + KP S A D+
Sbjct: 791 QHPILLIEFDQDKSFSLKS---------------INDVKP---------SGRTAPSELDM 826
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
AKL LLTL FP+LR+IWSS P+ T+++F +LKQ DEP A + +G
Sbjct: 827 QAKLVLLTLAFPRLRMIWSSSPFATSEIFADLKQNFDEPDAAKVALVG 874
>gi|413926649|gb|AFW66581.1| hypothetical protein ZEAMMB73_828091 [Zea mays]
Length = 1851
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 184/321 (57%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ S K+KV+F+ Y +S E Q Y S +RRE +AFE L
Sbjct: 620 KPSVIIVYHPDITFVREIEVYKAENSSRKLKVYFLFYEDSTEVQKYESSIRRENEAFESL 679
Query: 74 IQEKTNMAVPTEQDG------VSTEPE------------------ESCGRVIVDMREFRS 109
I++K+ M +P +QDG V+ EPE E +VIVDMREF S
Sbjct: 680 IRQKSLMMIPVDQDGRCIGPTVANEPEPPLCQNSITRKAGGKKAPEKEMQVIVDMREFMS 739
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 740 SLPNVLHQKGIRIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMARYYK 799
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 800 IPVLLIEFSQDKS--------------------------FSFQSANEIGDDVSP--TNII 831
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR+IWS + TA++F LK +DEP + A+ +G P+ED
Sbjct: 832 SKLSLLVLHFPRLRIIWSRSLHATAEIFMSLKTNQDEPDEKKATRVG-VPSEDGIVEDDV 890
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
++ YN + +F+ +LPG+ +
Sbjct: 891 RSENYNTSAIEFLRRLPGVTD 911
>gi|302656669|ref|XP_003020086.1| hypothetical protein TRV_05859 [Trichophyton verrucosum HKI 0517]
gi|291183867|gb|EFE39462.1| hypothetical protein TRV_05859 [Trichophyton verrucosum HKI 0517]
Length = 860
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 170/289 (58%), Gaps = 33/289 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + E V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 485 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQERNVRVYFMYYGESVEEQRYLSAVRREKDA 544
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI E+ MA+ D +P+E R V+VD+REFRS
Sbjct: 545 FTKLIHERGTMAMQLVHDKSHEDPQEQFLRTVNTRIAGGGRLAGTAAPPTVVVDVREFRS 604
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 605 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 664
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S ++ + + S ++ ++ +
Sbjct: 665 QPMLLIEFDQNKAFTFDA--FTSSATPTSYVAD---------NATSFGSGNMINPANPKS 713
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A +G
Sbjct: 714 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIKAVQVG 762
>gi|326482471|gb|EGE06481.1| DNA repair protein rad16 [Trichophyton equinum CBS 127.97]
Length = 987
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 183/332 (55%), Gaps = 51/332 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + + V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 612 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQDRNVRVYFMYYGESVEEQRYLSAVRREKDA 671
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI E+ MA+ D +P+E R V+VD+REFRS
Sbjct: 672 FTKLIHERGTMAMQLVHDKSHEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 731
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 732 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 791
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S ++ + + S ++ ++ +
Sbjct: 792 QPMLLIEFDQNKAFTFDA--FTSSATPTSYVAD---------NATSFGSGNMINPANPKS 840
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG--------QTP 279
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A +G TP
Sbjct: 841 AQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNSEPDPIKAVQVGLNFNISGLDTP 900
Query: 280 NEDYTDRYNAA----------IEDFISKLPGM 301
+ D AA +D I +PG+
Sbjct: 901 DGQPADMMPAAGVEHRVFSLLPQDMIRAVPGV 932
>gi|212526684|ref|XP_002143499.1| DNA repair protein RAD1, putative [Talaromyces marneffei ATCC
18224]
gi|210072897|gb|EEA26984.1| DNA repair protein RAD1, putative [Talaromyces marneffei ATCC
18224]
Length = 980
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 170/292 (58%), Gaps = 31/292 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P +I Y D A IR+VEVY+ + S+ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 602 LEEARPRYIIMYEPDAAFIRRVEVYRSSHSDRNVRVYFMYYGGSVEEQRYLSAVRREKDA 661
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI EK MAV D +PEE GR V+VD+REFRS
Sbjct: 662 FTKLITEKGGMAVTLTHDKSLEDPEEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 721
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDY+L+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 722 ALPSLLHGRSMVVVPCQLTVGDYVLTPDICVERKSVRDLISSLKNGRLYNQAETMLKHYK 781
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDI-AAKFLIEFDHNKPFELQGN--YYLSRDIAAKSS 226
PLLLIEFD NK F + S + + FL ++ F GN S + S+
Sbjct: 782 NPLLLIEFDQNKSFTFDA--FASASLPSTSFLSDY----VFTSSGNPASAASSSLVNPST 835
Query: 227 DITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK EP A IG
Sbjct: 836 PKSAQHMLVLLTLAFPRLKIIWSSSPYQTAEIFAELKNKNPEPDPIKAVQIG 887
>gi|327306946|ref|XP_003238164.1| DNA repair protein RAD1 [Trichophyton rubrum CBS 118892]
gi|326458420|gb|EGD83873.1| DNA repair protein RAD1 [Trichophyton rubrum CBS 118892]
Length = 973
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 170/287 (59%), Gaps = 29/287 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + E V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 598 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQERNVRVYFMYYGESVEEQRYLSAVRREKDA 657
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI E+ MA+ D +P+E GR V+VD+REFRS
Sbjct: 658 FTKLIHERGTMAMQLVHDKSHEDPQEQFLRTVNTRIAGGGRLAGTAAPPTVVVDVREFRS 717
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 718 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 777
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S ++ D+ F G+ + KS+
Sbjct: 778 QPMLLIEFDQNKAFTFDA--FTSSATPTSYVP--DNATSF---GSGNMINPANPKSAQ-- 828
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS PY TA++F ELK+ EP A +G
Sbjct: 829 HLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKSNSEPDPIKAVQVG 875
>gi|358371071|dbj|GAA87680.1| DNA repair protein RAD1 [Aspergillus kawachii IFO 4308]
Length = 981
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 170/291 (58%), Gaps = 29/291 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 608 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFIYYGGSVEEQRYLSAVRREKDS 667
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK+NMAV D +P+E S RV++D+REFRS
Sbjct: 668 FTKLIKEKSNMAVTITHDKSQVDPQEQFLRTVNTRIAGGGRLAATASPPRVVIDVREFRS 727
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + + P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 728 ALPSLLHGNNMIVVPCQLTVGDYILTPDICVERKSVRDLISSLRNGRLYNQAETMLQHYK 787
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD--IAAKSSD 227
PLLLIEFD NK F + + FL +F F G LS + + SS
Sbjct: 788 NPLLLIEFDENKSFTFDA-FASATTPGTTFLTDFG----FSSSGTSTLSANSSLVNPSSP 842
Query: 228 ITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A G
Sbjct: 843 KSAQHLLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQTG 893
>gi|389646611|ref|XP_003720937.1| DNA repair protein rad16 [Magnaporthe oryzae 70-15]
gi|86196512|gb|EAQ71150.1| hypothetical protein MGCH7_ch7g557 [Magnaporthe oryzae 70-15]
gi|351638329|gb|EHA46194.1| DNA repair protein rad16 [Magnaporthe oryzae 70-15]
gi|440472236|gb|ELQ41112.1| DNA repair protein rad16 [Magnaporthe oryzae Y34]
gi|440482198|gb|ELQ62713.1| DNA repair protein rad16 [Magnaporthe oryzae P131]
Length = 960
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 181/319 (56%), Gaps = 49/319 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP V+ Y D + IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 611 LEEVKPRYVVMYEPDASFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLSTIRREKDS 670
Query: 70 FEYLIQEKTNMAVPTEQD--GVSTEPEES---------CG-------------RVIVDMR 105
F L++E+ +MA+ D G +P+E+ G RV+VD+R
Sbjct: 671 FTKLLKERASMAITITTDPHGAPDDPQEAFLRTVNTRIAGGGRMTTKATAEPPRVVVDVR 730
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP L+H R L + P ++VGDYILSP+IC+ERKSISDLI S + GRL+ Q + M
Sbjct: 731 EFRSSLPSLIHGRSLVVVPCMLTVGDYILSPNICIERKSISDLISSFKDGRLFGQCESMF 790
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAK 224
+HY P+LLIEFD NK F L+ PF +L G R +A+
Sbjct: 791 QHYKNPMLLIEFDQNKSFTLE---------------------PFADLSGTLNSIRP-SAQ 828
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
SD+ ++L LLTL FPKLR+IWSS PY TA++F LK EP A G +
Sbjct: 829 PSDLQSRLVLLTLAFPKLRIIWSSSPYETAEIFERLKAQEPEPDPIAAVRAGLDGSTGVG 888
Query: 285 DR--YNAAIEDFISKLPGM 301
D +N ++ + +PG+
Sbjct: 889 DDQPFNTEPQEMLGIVPGI 907
>gi|145349776|ref|XP_001419304.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579535|gb|ABO97597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 975
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 179/339 (52%), Gaps = 67/339 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P+ V+ Y+ D + IR++EVYQ + +V VKV+F+ Y S+EEQ YLS ++RE A
Sbjct: 622 LNRIQPSFVVMYDPDASFIRELEVYQATRPDVPVKVYFLVYDTSLEEQKYLSSIKRESAA 681
Query: 70 FEYLIQEKTNMAVPTEQDGVST-------------------EPEESCGR----------- 99
FE LI+ K +MAVP EQ+G + E +E+ R
Sbjct: 682 FENLIRTKQHMAVPAEQEGWTDSENPLPLSLPSSTARHRIEESQEASTRKGGRSLTIRSS 741
Query: 100 --VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
VIVDMREF S LP +LH G + P T+ VGDYILSPD+CVERK+I DLI S SGRL
Sbjct: 742 LEVIVDMREFMSALPCVLHSAGFKVRPTTLEVGDYILSPDMCVERKAIPDLIQSFASGRL 801
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL 217
QV+ MC+HY P+LLIEFD +K F L L R + + LI
Sbjct: 802 IAQVEAMCKHYKTPILLIEFDGSKAFALHAEADLPRFVGQQHLI---------------- 845
Query: 218 SRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
K+ +L F KLRLIWS + TA++F ELK+ EPS E A IG
Sbjct: 846 ------------TKICMLITRFRKLRLIWSRSMHMTAEIFAELKRLEPEPSLETAQRIG- 892
Query: 278 TPNED------YTDRYNAAIEDFISKLPGMAEWSRARTL 310
P+ D D N A D + +LPG+ + + R +
Sbjct: 893 VPDADGDVHKLVKDNLNDAAVDLLRRLPGITDGNYRRVI 931
>gi|346320521|gb|EGX90121.1| DNA repair endonuclease XPF [Cordyceps militaris CM01]
Length = 940
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 178/315 (56%), Gaps = 45/315 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG S+EEQ YL+ +RREK A
Sbjct: 596 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSIEEQRYLTSVRREKDA 655
Query: 70 FEYLIQEKTNMAVPTEQD--GVSTEPEES---------CG-----------RVIVDMREF 107
F LI+E+ M++ D G+ +P+E+ G RV+VD+REF
Sbjct: 656 FTKLIKERAGMSLVMTVDPHGIQ-DPQEAFLRTVNTRIAGGGRLAATAEPPRVVVDVREF 714
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + + P ++VGDYILSP ICVERKSISDL+ S + GRL+TQ + M +H
Sbjct: 715 RSSLPSLLHGRAMVVVPCMLTVGDYILSPTICVERKSISDLVSSFKDGRLFTQAETMFQH 774
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEFD NK F L+ PF S SSD
Sbjct: 775 YKNPMLLIEFDQNKSFTLE---------------------PFADLSGSLSSVSATNVSSD 813
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
+ +KL LLTL FPKLR+IWSS PY TA++F LK EP A G + D+
Sbjct: 814 LQSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKTQEAEPDPLAAVRAGLDKDARAEDQV 873
Query: 287 YNAAIEDFISKLPGM 301
+N +D ++ +PG+
Sbjct: 874 FNQEPQDMLAVVPGV 888
>gi|320165280|gb|EFW42179.1| DNA repair helicase RAD25 [Capsaspora owczarzaki ATCC 30864]
Length = 1243
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 191/349 (54%), Gaps = 77/349 (22%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+++ P V+ ++ + +RQ+EV++C + + ++++ + Y SVEEQ YL+ +R+EK A
Sbjct: 883 LKAVDPIFVVLFDPEPWVVRQLEVFKCTRPAIPLRIYMLVYKTSVEEQRYLTSIRKEKDA 942
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC-----------GR------------------- 99
F LI EK+ MAVP +QDG E++ GR
Sbjct: 943 FLALIYEKSMMAVPVDQDGRRDFSEQTSAMDADLQQANFGRSQGQASSTHLMFPSNPSLS 1002
Query: 100 ----------------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERK 143
VIVDMREFRS LP +LH RG +EPVT+ +GDY++S +CVERK
Sbjct: 1003 MAAANASSAASSRRRLVIVDMREFRSTLPSMLHARGFDVEPVTLDIGDYVISQTMCVERK 1062
Query: 144 SISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
SI DLIGS QSGRLY QV+ M ++Y +P+LLIEFD NK F+LQ L+ +++ K
Sbjct: 1063 SIPDLIGSFQSGRLYAQVENMTKYYEQPILLIEFDENKAFQLQARGDLTAEVSLK----- 1117
Query: 204 DHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQG 263
+I++KL LLTLHFP LR++WS P+ TA++F L +G
Sbjct: 1118 -----------------------NISSKLVLLTLHFPGLRILWSQSPHATAEMFDSLTEG 1154
Query: 264 RDEPSAEVASSIG-QTPNEDYTDRYNAAI-EDFISKLPGMAEWSRARTL 310
+ P+ E A G P+ TD + +++ +D + KL G+ S AR L
Sbjct: 1155 VERPAIEDAVGKGSDDPSVTDTDSHGSSVAQDLLRKLAGV-NASNARPL 1202
>gi|400595560|gb|EJP63355.1| DNA repair protein [Beauveria bassiana ARSEF 2860]
Length = 940
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 179/315 (56%), Gaps = 45/315 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YL+ +RREK A
Sbjct: 596 LEEVRPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLASVRREKDA 655
Query: 70 FEYLIQEKTNMA--VPTEQDGVSTEPEES---------CG-----------RVIVDMREF 107
F LI+E+ +M+ + E G+ +P+E+ G RV+VD+REF
Sbjct: 656 FTRLIKERASMSLVMTVEPHGIQ-DPQEAFLRTVNTRIAGGGRLAATAEPPRVVVDVREF 714
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + I P ++VGDY+LSP ICVERKSISDL+ S + GRL+TQ + M +H
Sbjct: 715 RSSLPSLLHGRAMVIVPCMLTVGDYVLSPTICVERKSISDLVSSFKDGRLFTQAETMFQH 774
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEFD NK F L+ PF S SSD
Sbjct: 775 YRNPMLLIEFDQNKSFTLE---------------------PFADLSGSMSSVSATNVSSD 813
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
+ +KL LLTL FPKLR+IWSS PY TA++F LK EP A G + D+
Sbjct: 814 LQSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKTQEAEPDPIAAVRAGLDKDARAEDQV 873
Query: 287 YNAAIEDFISKLPGM 301
+N +D ++ +PG+
Sbjct: 874 FNQEPQDMLAVVPGV 888
>gi|326474377|gb|EGD98386.1| DNA repair protein RAD1 [Trichophyton tonsurans CBS 112818]
Length = 985
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 182/332 (54%), Gaps = 51/332 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + + V+V+FM YGESVEEQ YLS +RREK A
Sbjct: 610 LEELRPRYIIMYEPDAAFIRRVEVYRSSHQDRNVRVYFMYYGESVEEQRYLSAVRREKDA 669
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI E+ MA+ D +P+E R V+VD+REFRS
Sbjct: 670 FTKLIHERGTMAMQLVHDKSHEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 729
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYI++PDICVERKS+ DLI SL++GRLYTQ + M +HY+
Sbjct: 730 ALPSLLHGRSMVVVPCQLTVGDYIITPDICVERKSVRDLISSLKNGRLYTQAETMLQHYS 789
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEFD NK F + S ++ + + S ++ ++ +
Sbjct: 790 QPMLLIEFDQNKAFTFDA--FTSSATPTSYVAD---------NATSFGSGNMINPANPKS 838
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG--------QTP 279
A+ L LLTL FP+L++IWSS PY TA +F ELK+ EP A +G TP
Sbjct: 839 AQHLLVLLTLAFPRLKIIWSSSPYQTAGIFAELKKNNSEPDPIKAVQVGLNFNISGLDTP 898
Query: 280 NEDYTDRYNAA----------IEDFISKLPGM 301
+ D AA +D I +PG+
Sbjct: 899 DGQPADMMPAAGVEHRVFSLLPQDMIRAVPGV 930
>gi|213405985|ref|XP_002173764.1| DNA repair protein rad16 [Schizosaccharomyces japonicus yFS275]
gi|212001811|gb|EEB07471.1| DNA repair protein rad16 [Schizosaccharomyces japonicus yFS275]
Length = 870
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 174/316 (55%), Gaps = 50/316 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P +I Y+AD A IR+VEVY+ E ++KV+F YG +VEEQ YL +RREK +
Sbjct: 535 LEELSPNYIIMYDADPAFIRRVEVYRATHPERQLKVYFTYYGGTVEEQRYLFAVRREKDS 594
Query: 70 FEYLIQEKTNMAVP-TEQDGVSTEPEES---------CG------------RVIVDMREF 107
F LI+E+ NM V T + T+PE G RVIVD+REF
Sbjct: 595 FSRLIRERANMTVLLTTAEESLTDPEHKFLQSVNTRIAGGGRVSSMSTEQPRVIVDLREF 654
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP +LH G + P ++VGDYILSP +CVERKS+ DLI SL SGRLY+Q + M H
Sbjct: 655 RSTLPSMLHGHGFSVVPCQLTVGDYILSPKLCVERKSVPDLIQSLNSGRLYSQCESMQDH 714
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEFD NK F+L+ LS +I +D
Sbjct: 715 YEIPILLIEFDQNKSFQLEPFAELSAEIG----------------------------KND 746
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
+ +KL LLTL FPKL++IWSS Y T +F +LK +EP E A S G P +D T
Sbjct: 747 LQSKLVLLTLCFPKLKIIWSSSAYATVLIFSDLKALHEEPDPETAVSYGLEPGQDATSTL 806
Query: 288 NAAIEDFISKLPGMAE 303
N A D + LP +++
Sbjct: 807 NRAPVDLLLGLPYVSQ 822
>gi|342874038|gb|EGU76113.1| hypothetical protein FOXB_13359 [Fusarium oxysporum Fo5176]
Length = 950
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 178/313 (56%), Gaps = 43/313 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEETKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQKYLSSVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F LI+E+ +M++ D + +PEE+ G RV+VD+REFRS
Sbjct: 669 FTKLIKERASMSLVMTVDP-AEDPEEAFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 727
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M ++Y
Sbjct: 728 SLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQYYK 787
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+LLIEFD NK F L+ PF S SSD+
Sbjct: 788 SVMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNMSSDLQ 826
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLTL FPKLR+IWSS PY TA++F LK +EP A G + ++ +N
Sbjct: 827 SKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKTQEEEPDPIAAVRAGLDKDTRAEEQAFN 886
Query: 289 AAIEDFISKLPGM 301
+D ++ +PG+
Sbjct: 887 QEPQDMLAIVPGV 899
>gi|156056488|ref|XP_001594168.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980]
gi|154703380|gb|EDO03119.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 929
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 174/314 (55%), Gaps = 43/314 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y + + +R+VEVY+ + ++ V+V+F+ YG SVEEQ YLS RREK A
Sbjct: 589 LEEVKPRYIIMYEPETSFVRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSTRREKDA 648
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+EK NM+V D E P+E+ G RV+VD+REFR
Sbjct: 649 FTKLIKEKANMSVVLTLDAHGIEDPQEAFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 708
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDY+LSP+ICVERKSI DLI S + GRLYTQ + M HY
Sbjct: 709 SSLPSLLHGRSIVVVPCMLTVGDYVLSPNICVERKSIKDLISSFKDGRLYTQAESMLEHY 768
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD K F L+ PF S A SSD+
Sbjct: 769 KSPMLLIEFDQGKSFTLE---------------------PFADLSGSLSSVSAANVSSDL 807
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK EP A IG D+ +
Sbjct: 808 QSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKSQEPEPDPIQAVKIGLEGGASAEDQAF 867
Query: 288 NAAIEDFISKLPGM 301
N +D + +PG+
Sbjct: 868 NREPQDMLRVVPGV 881
>gi|115386690|ref|XP_001209886.1| hypothetical protein ATEG_07200 [Aspergillus terreus NIH2624]
gi|114190884|gb|EAU32584.1| hypothetical protein ATEG_07200 [Aspergillus terreus NIH2624]
Length = 890
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 169/291 (58%), Gaps = 29/291 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y + + IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 515 LEEVRPRYIIMYEPEPSFIRRVEVYRSSHVGRNVRVYFMYYGGSVEEQRYLSAVRREKDS 574
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK NMAV D + +P+E S RV+VD+REFRS
Sbjct: 575 FTKLIKEKGNMAVTITHDKSAVDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 634
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 635 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLIASLRNGRLYNQAETMLQHYK 694
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG--NYYLSRDIAAKSSD 227
PLLLIEFD NK F + + + L +F F G S + SS
Sbjct: 695 NPLLLIEFDQNKSFTFDA-FASASNPGTTALTDFG----FSSSGAATTSASSSLVNPSSP 749
Query: 228 ITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 750 KSAQHMLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPLQAVQIG 800
>gi|358393642|gb|EHK43043.1| hypothetical protein TRIATDRAFT_149406 [Trichoderma atroviride IMI
206040]
Length = 925
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 178/314 (56%), Gaps = 43/314 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 582 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 641
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 642 FTKLIKERASMSLVMTVDPHGAEDPQEAFLRTVNTRIAGGGKLAATAEPPRVVVDVREFR 701
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M ++Y
Sbjct: 702 SSLPSLLHGRSMVVVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQYY 761
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD NK F L+ PF S SSD+
Sbjct: 762 KNPMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNVSSDL 800
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FPKLR+IWSS PY TA++F LK EP A G + D+ +
Sbjct: 801 QSKLVLLTLAFPKLRIIWSSSPYETAEIFASLKTLEHEPDPIAAVQAGLDKDSKVEDQVF 860
Query: 288 NAAIEDFISKLPGM 301
N ++ ++ +PG+
Sbjct: 861 NQEPQEMLTIVPGV 874
>gi|336364595|gb|EGN92951.1| hypothetical protein SERLA73DRAFT_127060 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378509|gb|EGO19667.1| hypothetical protein SERLADRAFT_374385 [Serpula lacrymans var.
lacrymans S7.9]
Length = 937
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 192/348 (55%), Gaps = 44/348 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ + + IR++EVY+ + + V+V+FM Y S EE YL+ LRREK++
Sbjct: 584 LWEVKPRFIVMFEPSLEFIRRIEVYKNSSPGLGVRVYFMIYQLSCEEHKYLAGLRREKES 643
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES----------CGR---------VIVDMREFRSE 110
FE LI+E+ +M +P Q S + E + GR VIVDMREFRS
Sbjct: 644 FERLIKERGSMLLPIFQTQTSGKGENTFIKTISSRFAGGRKELSTTPPQVIVDMREFRST 703
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LLH L I P T++VGDY+L+PDICVERKSI DL+ S SGRLYTQ + M HY +
Sbjct: 704 LPSLLHASSLLIIPATLTVGDYVLTPDICVERKSIPDLVSSFNSGRLYTQCELMSVHYKQ 763
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
P+LLIEF+ NK F L+ L AK ++ KP D AA S + +
Sbjct: 764 PILLIEFEENKSFSLETVSELKS--YAKPSSKYPSKKPAGPSDT-----DRAAPS--VQS 814
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAA 290
KL LLTLHFP++R+IWSS PY T +F +LK EP + A +IG + + NAA
Sbjct: 815 KLVLLTLHFPRVRIIWSSSPYATTDIFNDLKANNYEPDSARAVAIGAEDDPEAGAGVNAA 874
Query: 291 IEDFISKLPG---------MAEWSRARTLN-------LEVLGLNPGQG 322
E+ + LPG M++ R L E+LG+ PG+
Sbjct: 875 AEELLRCLPGITAKNVKYVMSKVQSVRELCEMSNEQVQEILGVGPGKA 922
>gi|346976325|gb|EGY19777.1| DNA repair protein rad16 [Verticillium dahliae VdLs.17]
Length = 955
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 181/315 (57%), Gaps = 45/315 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 614 LEEVKPRYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLSGVRREKDA 673
Query: 70 FEYLIQEKTNMAV--PTEQDGVSTEPEES---------CG-----------RVIVDMREF 107
F +I+E+ +M++ T++ GV +P+++ G RV+VD+REF
Sbjct: 674 FTKVIKERASMSMVMTTDERGVE-DPQDTFLRTVNTRIAGGGRLAATAQPPRVVVDVREF 732
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + + P ++VGDY+LSP +CVERKS+SDLI S + GRLYTQ + M +H
Sbjct: 733 RSSLPSLLHGRNMVVVPCMLTVGDYVLSPTMCVERKSVSDLISSFRDGRLYTQAETMFQH 792
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y +LLIEFD +K F L+ PF S SSD
Sbjct: 793 YKSAMLLIEFDQHKSFTLE---------------------PFADLSASLSSVAPTNVSSD 831
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
+ +KL LLTL FP+LR+IWSS PY TA++F LK DEP A G + D+
Sbjct: 832 LQSKLVLLTLAFPRLRVIWSSSPYQTAEIFASLKTQEDEPDPIAAVRAGLDRDARAEDQS 891
Query: 287 YNAAIEDFISKLPGM 301
+N +D ++ +PG+
Sbjct: 892 FNREPQDMLAVVPGV 906
>gi|242781532|ref|XP_002479819.1| DNA repair protein RAD1, putative [Talaromyces stipitatus ATCC
10500]
gi|218719966|gb|EED19385.1| DNA repair protein RAD1, putative [Talaromyces stipitatus ATCC
10500]
Length = 972
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 171/292 (58%), Gaps = 31/292 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 594 LEEARPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQRYLSTVRREKDA 653
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI EK +AV D + +PEE R V+VD+REFRS
Sbjct: 654 FTKLITEKGGLAVTLTHDKILEDPEEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 713
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDY+L+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 714 ALPSLLHGRSMVVVPCQLTVGDYVLTPDICVERKSVRDLISSLKNGRLYNQAETMLKHYK 773
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDI-AAKFLIEFDHNKPFELQGN--YYLSRDIAAKSS 226
PLLLIEF+ NK F + S + + FL ++ F GN + + S+
Sbjct: 774 NPLLLIEFEQNKSFTFDA--FASASLPSTSFLSDY----VFTSSGNPASAANSSLVNPST 827
Query: 227 DITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 828 PKSAQHMLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIKAVQIG 879
>gi|389742929|gb|EIM84115.1| hypothetical protein STEHIDRAFT_61821 [Stereum hirsutum FP-91666
SS1]
Length = 996
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 181/316 (57%), Gaps = 35/316 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ + + +R++EVY+ + + V+V+FM Y S EE YL+ LR+EK +
Sbjct: 642 LAEIQPRFIVMFEPNQDFVRRIEVYRSSNPGLAVRVYFMLYQTSCEEHKYLAGLRKEKDS 701
Query: 70 FEYLIQEKTNMAVPTEQDG------------------------VSTEPEESCGRVIVDMR 105
FE LI+E+ +M +P +D VSTEP RVIVDMR
Sbjct: 702 FENLIKERGSMLLPIFEDQRAGTDVGEALIKTISSRVAGGRKEVSTEPP----RVIVDMR 757
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP LLH + + P T++VGDY+L+PDICVERKSI DL+ S SGRLYTQ + M
Sbjct: 758 EFRSTLPSLLHASQIVVIPATLTVGDYVLTPDICVERKSIPDLVSSFNSGRLYTQCELMS 817
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
HY +P+LLIEF+ +K F L+ + +D+ K ++ P + G A+
Sbjct: 818 VHYKQPILLIEFEEHKSFSLE----IVQDM--KSYVKPTAKYPAKKLGGAQ-PEGFASGL 870
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
I +KL LLTL FP+LR+IWSS PY TA +F +LK EPS A +IG T + D
Sbjct: 871 PSIQSKLVLLTLSFPRLRIIWSSSPYATASIFNDLKASMPEPSPAAAIAIGATDDPDAGK 930
Query: 286 RYNAAIEDFISKLPGM 301
N A ED + +PG+
Sbjct: 931 GVNQAAEDLLRTIPGV 946
>gi|255951024|ref|XP_002566279.1| Pc22g23880 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593296|emb|CAP99676.1| Pc22g23880 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 972
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 169/289 (58%), Gaps = 26/289 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + S VKV+FM YG SVEEQ YLS +RREK +
Sbjct: 601 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHSGRNVKVYFMYYGGSVEEQRYLSAVRREKDS 660
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK NMAV D + +P+E S RV+VD+REFRS
Sbjct: 661 FTKLIKEKGNMAVTLTHDKKAEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 720
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + + P ++VGDYIL+PDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 721 ALPSLLHGNNMIVIPCQLTVGDYILTPDICVERKSIRDLISSLKNGRLYNQAETMLQYYK 780
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + S F+ D+ S +A S+ +
Sbjct: 781 SPLLLIEFDQNKSFTFDA--FASVPTGPTFMT--DYGFSSSGTATSTSSSSLANPSNPKS 836
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L+++WSS PY TA++F ELK+ EP A +G
Sbjct: 837 AQHLLVLLTLAFPRLKIVWSSSPYQTAEIFAELKKNAQEPDPLRAVQLG 885
>gi|408388573|gb|EKJ68254.1| hypothetical protein FPSE_11557 [Fusarium pseudograminearum CS3096]
Length = 937
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 178/313 (56%), Gaps = 43/313 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 596 LEETKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQKYLSSVRREKDA 655
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F +I+E+ +M++ D + +PEE+ G RV+VD+REFRS
Sbjct: 656 FTKVIKERASMSLVMTVDP-TEDPEEAFLRTVNTRIAGGGRLAATAEPPRVVVDVREFRS 714
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M ++Y
Sbjct: 715 SLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQYYK 774
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+LLIEFD NK F L+ PF S SSD+
Sbjct: 775 NVMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNMSSDLQ 813
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLT+ FPKLR+IWSS PY TA++F LK +EP A G + ++ +N
Sbjct: 814 SKLVLLTIAFPKLRIIWSSSPYQTAEIFETLKTQEEEPDPIAAVRAGLDKDTRAEEQAFN 873
Query: 289 AAIEDFISKLPGM 301
+D ++ +PG+
Sbjct: 874 QEPQDMLAIVPGV 886
>gi|409042926|gb|EKM52409.1| hypothetical protein PHACADRAFT_149022 [Phanerochaete carnosa
HHB-10118-sp]
Length = 958
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 190/351 (54%), Gaps = 52/351 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P VI Y ++ R++EVY+ + + V+V+ M Y S EE YL+D+RREK A
Sbjct: 604 LSEIQPRYVIMYEPNLEFTRRLEVYKKSTPGLGVRVYLMLYNNSCEEAKYLTDVRREKDA 663
Query: 70 FEYLIQEKTNMAVPTEQD-----------------------GVSTEPEESCGRVIVDMRE 106
FE LI+E+ +M +P ++ +TEP RVIVD+RE
Sbjct: 664 FERLIKERGSMLMPILEERRPTDSGDNLIRTISTRIAGGRKDTTTEPL----RVIVDLRE 719
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
FRS LP LLH G+ + P T++VGDY+L+PD+CVERKSI DL+ S SGRLYTQ + M
Sbjct: 720 FRSSLPSLLHNAGILVVPATLTVGDYVLTPDMCVERKSIPDLVSSFNSGRLYTQCEMMSA 779
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
HY P+LLIE++ NK F L+ + AK ++ KP ++ A +
Sbjct: 780 HYKHPILLIEWEENKSFSLEAVQEIKS--YAKPSNKYQKKKPSAMETT-------AMSTY 830
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR 286
+I AKL LLTL FP++R+IWSS PY TA +F +LKQ EP A ++G + +
Sbjct: 831 NIQAKLVLLTLTFPRVRIIWSSSPYATAAIFSDLKQHNFEPDPAKAIAVGAEEDGENGPG 890
Query: 287 YNAAIEDFISKLPGMAEWSRARTLN----------------LEVLGLNPGQ 321
N A E+ + LPG++ +N ++LG+ PG+
Sbjct: 891 TNHAAEELLRALPGVSAQGVRHIMNKVESVREFCELNLVQMQDILGVEPGK 941
>gi|46128561|ref|XP_388834.1| hypothetical protein FG08658.1 [Gibberella zeae PH-1]
Length = 912
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 178/313 (56%), Gaps = 43/313 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 571 LEETKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFMYYGGSVEEQKYLSSVRREKDA 630
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES---------CG-----------RVIVDMREFRS 109
F +I+E+ +M++ D + +PEE+ G RV++D+REFRS
Sbjct: 631 FTKVIKERASMSLVMTVDP-TEDPEEAFLRTVNTRIAGGGRLAATAEPPRVVIDVREFRS 689
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + I P ++VGDYILSP+ICVERKSISDLI S + GRLY+Q + M ++Y
Sbjct: 690 SLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSISDLISSFKDGRLYSQAETMFQYYK 749
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+LLIEFD NK F L+ PF S SSD+
Sbjct: 750 NVMLLIEFDQNKSFTLE---------------------PFADLSGSLNSVAPTNMSSDLQ 788
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YN 288
+KL LLT+ FPKLR+IWSS PY TA++F LK +EP A G + ++ +N
Sbjct: 789 SKLVLLTIAFPKLRIIWSSSPYQTAEIFETLKTQEEEPDPIAAVRAGLDKDTRAEEQAFN 848
Query: 289 AAIEDFISKLPGM 301
+D ++ +PG+
Sbjct: 849 QEPQDMLAIVPGV 861
>gi|348686524|gb|EGZ26339.1| hypothetical protein PHYSODRAFT_327253 [Phytophthora sojae]
Length = 974
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 189/338 (55%), Gaps = 63/338 (18%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
S+ L L P+ ++ Y+ D+A IR+VEV+ A ++++FM Y ES E+Q+YLS+++RE
Sbjct: 629 SAFLEDLMPSCIVLYDPDMAFIREVEVFH-ATHVAPLEIYFMMYDESTEQQSYLSEIQRE 687
Query: 67 KKAFEYLIQEKTNMAVPTE-----------QDGVSTEPEESCG----------RVIVDMR 105
K+AF+ LI +K ++ +P Q V + G +V+VD+R
Sbjct: 688 KRAFDKLIHQKAHLMMPANVYDLPLHMKLRQQTVEYSMDTRTGGRAKSHRGGVKVVVDVR 747
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP +LHK GL++ PVT+ +GDYILSP+ICVERKSISDL GSL SGRL+ Q + M
Sbjct: 748 EFRSALPSMLHKEGLFVLPVTLEIGDYILSPEICVERKSISDLFGSLNSGRLFNQAESMR 807
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
R Y P+LLIEF QG K F LQ L +I A
Sbjct: 808 RFYKTPVLLIEFT-------QG-------------------KAFSLQDVSELGSEITA-- 839
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ-TPNED-- 282
++I +KL LL LHFP LR++WS P+ T LF +K+ +DEP E A+++G P +D
Sbjct: 840 TNIVSKLTLLILHFPSLRILWSRSPHATVDLFKIIKKYQDEPDMEAAAALGNGLPMDDSG 899
Query: 283 ----------YTDRYNAAIEDFISKLPGMAEWSRARTL 310
++ YN + D + KLPG+ E + + L
Sbjct: 900 AQNNSGEGKLASNYYNTSSIDVLKKLPGINEHNFRKVL 937
>gi|319411541|emb|CBQ73585.1| related to RAD1-component of the nucleotide excision repairosome
[Sporisorium reilianum SRZ2]
Length = 967
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 180/333 (54%), Gaps = 67/333 (20%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P VI Y+ D A +R+VEVY+ V V+V+F+ Y +SVEEQ YLS LRREK++
Sbjct: 615 LQELRPRFVIMYDPDPAFVRRVEVYRSTNPGVGVRVYFLIYADSVEEQRYLSALRREKES 674
Query: 70 FEYLIQEKTNMAVPTEQDG-----------VSTEPEESCG----------RVIVDMREFR 108
FE LI+EK+ MA+P DG + T G R+IVDMREFR
Sbjct: 675 FERLIREKSMMALPLSADGRPIAEDADQRFLRTISSRVAGGQRSATAEPPRIIVDMREFR 734
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + + P T+ VGDY+L+P +CVERKS+SDLI S SGRLYTQ + MC HY
Sbjct: 735 SSLPSMLHAADIQVIPCTLQVGDYVLTPTMCVERKSLSDLIQSFNSGRLYTQCELMCVHY 794
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ--GNYYLSRDIAAKSS 226
P+LLIEFD +K F L+ + + A
Sbjct: 795 QHPILLIEFD--------------------------QDKSFSLKSVNDGKATGRSAGTEL 828
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA---------EVASSIGQ 277
DI AKL LLT FP+LR+IWSS PY T+ +F +LKQ DEP A +V + G
Sbjct: 829 DIQAKLVLLTSAFPRLRIIWSSSPYATSDIFADLKQNFDEPDAAKVALVGLDDVLEAEGS 888
Query: 278 TPNE-----DYTD----RYNAAIEDFISKLPGM 301
T +E D+ +N +D + LPG+
Sbjct: 889 TTSELVRRADWQSSSEHSFNLGPQDLLRALPGV 921
>gi|443897896|dbj|GAC75235.1| hypothetical protein PANT_14d00101 [Pseudozyma antarctica T-34]
Length = 995
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 203/400 (50%), Gaps = 86/400 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P VI Y+ D A +R+VEVY+ V ++V+F+ Y +SVEEQ YLS LRREK++
Sbjct: 643 LQELRPRFVIMYDPDPAFVRRVEVYRSTNPGVGIRVYFLIYADSVEEQRYLSSLRREKES 702
Query: 70 FEYLIQEKTNMAVPTEQDG-----------VSTEPEESCG----------RVIVDMREFR 108
FE LI+EK+ MA+P DG + T G R+IVDMREFR
Sbjct: 703 FERLIREKSMMALPLSADGRPIAEDADQRFLRTISSRVAGGQRSATAEPPRIIVDMREFR 762
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + + P T+ VGDY+L+P +CVERKS++DL+ S SGRLYTQ + MC HY
Sbjct: 763 SSLPSMLHAADIQVIPCTLQVGDYVLTPTMCVERKSLTDLVQSFNSGRLYTQCELMCVHY 822
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS-- 226
P+LLIEFD +K F L+ A S
Sbjct: 823 QHPILLIEFD--------------------------QDKSFSLKSTSDAKPGGRATGSEL 856
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR 286
DI AKL LLT FP+LR+IWSS P+ T+ +F ELKQ DEP A + +G +D +
Sbjct: 857 DIQAKLVLLTSSFPRLRIIWSSSPFATSDIFAELKQNFDEPDASKVALVGL---DDVLEA 913
Query: 287 YNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAP 346
D + + AEW ++ + L P +L RA
Sbjct: 914 EGNGGSDPVKR----AEW---QSSSEHSYNLGP-------QDLLRA-------------- 945
Query: 347 GRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLV 386
P VT+KN V+++ + LC +S++E+ L+
Sbjct: 946 ------LPGVTTKNFRYVMSQVRDISDLCNMSQEEVGELI 979
>gi|425771605|gb|EKV10043.1| DNA repair protein RAD1, putative [Penicillium digitatum Pd1]
gi|425777109|gb|EKV15299.1| DNA repair protein RAD1, putative [Penicillium digitatum PHI26]
Length = 960
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 168/289 (58%), Gaps = 26/289 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P +I Y D A IR+VEVY+ + S VKV+FM YG SVEEQ YLS +RREK A
Sbjct: 589 LEEARPRYIIMYEPDPAFIRRVEVYRSSHSGRNVKVYFMYYGGSVEEQRYLSAVRREKDA 648
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK MAV D + +P+E S RV+VD+REFRS
Sbjct: 649 FTKLIKEKGTMAVTLTHDKKAEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 708
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + + P ++VGDYIL+PDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 709 ALPSLLHGNNMIVIPCQLTVGDYILTPDICVERKSIPDLISSLKNGRLYNQAETMIQYYK 768
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + S + F+ D+ S +A S+ +
Sbjct: 769 NPLLLIEFDQNKSFTFDA--FASVPTGSTFMT--DYGFSSSGTATSTTSSSLANPSNPKS 824
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L+++WSS PY TA++F ELK+ EP A +G
Sbjct: 825 AQHLLVLLTLAFPRLKIVWSSSPYQTAEIFAELKKNAQEPDPLRAVQLG 873
>gi|242212918|ref|XP_002472290.1| predicted protein [Postia placenta Mad-698-R]
gi|220728657|gb|EED82547.1| predicted protein [Postia placenta Mad-698-R]
Length = 950
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 182/314 (57%), Gaps = 29/314 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ ++P ++ + ++ IR++EVY+ + + V+V+FM Y S EE YL+ LRREK+A
Sbjct: 597 LQEMQPRFIVMFEPNLEFIRRIEVYRNSNPGLGVRVYFMMYKLSCEEGKYLTGLRREKEA 656
Query: 70 FEYLIQEKTNMAVPTEQD-------------------GVSTEPEESCGRVIVDMREFRSE 110
FE LI+E+ +M +P ++ G E RVIVDMREFRS
Sbjct: 657 FERLIKERGSMLMPIMEERRSGTAGESLIKTISSRIAGGQKEVSAESSRVIVDMREFRSS 716
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LLH L + PVT++VGDYIL+PDICVERKSI DL+ S SGRLYTQ + M HY +
Sbjct: 717 LPSLLHASHLLVIPVTLTVGDYILTPDICVERKSIPDLVSSFNSGRLYTQCELMSVHYKQ 776
Query: 171 PLLLIEFDHNKPFELQGNYYLSR--DIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF+ +K F L+ + +AK+ P + + + + S+ I
Sbjct: 777 PILLIEFEEHKSFSLEAVTEIKSYAKPSAKY--------PAKKKPGAMPAESAPSASASI 828
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYN 288
AKL LLTL FP++R+IWSS PY TA++F +LK EP A ++G + N
Sbjct: 829 QAKLVLLTLTFPRVRIIWSSSPYATAEVFRDLKAHAAEPDPARAVAVGAEEDPAQGAGVN 888
Query: 289 AAIEDFISKLPGMA 302
AA E+ + LPG++
Sbjct: 889 AAAEELLRALPGVS 902
>gi|15237571|ref|NP_198931.1| DNA repair endonuclease UVH1 [Arabidopsis thaliana]
gi|55976770|sp|Q9LKI5.2|XPF_ARATH RecName: Full=DNA repair endonuclease UVH1; AltName: Full=DNA
excision repair protein XP-F homolog; AltName:
Full=Ultraviolet hypersensitive 1; Short=AtRAD1
gi|6013183|gb|AAF01274.1|AF160500_1 repair endonuclease [Arabidopsis thaliana]
gi|11995299|gb|AAG42948.1|AF089003_1 single stranded DNA endonuclease RAD1 [Arabidopsis thaliana]
gi|9759161|dbj|BAB09717.1| repair endonuclease [Arabidopsis thaliana]
gi|22655254|gb|AAM98217.1| repair endonuclease [Arabidopsis thaliana]
gi|87128657|gb|ABD23028.1| ultraviolet hypersensitive 1 [Arabidopsis thaliana]
gi|332007264|gb|AED94647.1| DNA repair endonuclease UVH1 [Arabidopsis thaliana]
Length = 956
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 185/322 (57%), Gaps = 60/322 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQDGV------STE-PEESC---------GR--------VIVDMREFR 108
LI++K++M +P +QDG+ STE P S GR VIVDMREF
Sbjct: 675 LIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEKETQVIVDMREFM 734
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRL+ QV+ M R+Y
Sbjct: 735 SSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYY 794
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q S DI+ D P+ +I
Sbjct: 795 RIPVLLIEFSQDKSFSFQS----SSDIS-------DDVTPY-----------------NI 826
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------ 282
+KL LL LHFP+LRL+WS + TA++F LK +DEP A +G P+E+
Sbjct: 827 ISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVG-VPSEEGIIEND 885
Query: 283 -YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+++
Sbjct: 886 IRAENYNTSAVEFLRRLPGVSD 907
>gi|121704028|ref|XP_001270278.1| DNA repair protein RAD1, putative [Aspergillus clavatus NRRL 1]
gi|119398422|gb|EAW08852.1| DNA repair protein RAD1, putative [Aspergillus clavatus NRRL 1]
Length = 977
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 167/289 (57%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y + A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 601 LDEVRPRYIIMYEPEPAFIRRVEVYRSSHVGRNVRVYFIYYGGSVEEQRYLSAVRREKDS 660
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK +MAV D +P+E S RV+VD+REFRS
Sbjct: 661 FTKLIKEKGSMAVTLTHDKSQEDPQELFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 720
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 721 ALPSLLHGNNMVIVPCQLTVGDYILTPDICVERKSVRDLIASLKNGRLYNQAETMLQHYK 780
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + S FL ++ + S + S+ +
Sbjct: 781 NPLLLIEFDQNKSFTFDA-FASSSMPGTSFLTDYGFSSSGTGTTTLSASSSLMNPSTPKS 839
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L+++WSS PY TA++F ELK+ EP A IG
Sbjct: 840 AQHLLVLLTLTFPRLKIVWSSSPYQTAEIFAELKKNNPEPDPIRAVQIG 888
>gi|297801452|ref|XP_002868610.1| hypothetical protein ARALYDRAFT_493859 [Arabidopsis lyrata subsp.
lyrata]
gi|297314446|gb|EFH44869.1| hypothetical protein ARALYDRAFT_493859 [Arabidopsis lyrata subsp.
lyrata]
Length = 956
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 185/322 (57%), Gaps = 60/322 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVREIEVYKAENPLRKLKVYFLFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQDGV------STE-PEESC---------GR--------VIVDMREFR 108
LI++K++M +P +QDG+ STE P S GR VIVDMREF
Sbjct: 675 LIRQKSSMMIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKEMEKETQVIVDMREFM 734
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRL+ QV+ M R+Y
Sbjct: 735 SSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYY 794
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q + DI+ D P+ +I
Sbjct: 795 RIPVLLIEFSQDKSFSFQS----ASDIS-------DDVTPY-----------------NI 826
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------ 282
+KL LL LHFP+LR++WS + TA++F LK +DEP A +G P+E+
Sbjct: 827 ISKLSLLVLHFPRLRILWSRSLHATAEIFTTLKSNQDEPDETRAVRVG-VPSEEGIIEND 885
Query: 283 -YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+++
Sbjct: 886 IRAENYNTSAVEFLRRLPGVSD 907
>gi|119467270|ref|XP_001257441.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181]
gi|119405593|gb|EAW15544.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181]
Length = 975
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 182/329 (55%), Gaps = 37/329 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 599 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVARNVRVYFIYYGGSVEEQRYLSAVRREKDS 658
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK +MAV D +P+E S RV+VD+REFRS
Sbjct: 659 FTKLIKEKGSMAVTLTHDKSQEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 718
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 719 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLITSLRNGRLYNQAETMLQHYK 778
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL ++ + + +S + SS +
Sbjct: 779 NPLLLIEFDQNKSFTFDA-FASASTPGTSFLTDYGFSSSGTGTTSLSVSSSLMNPSSPKS 837
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG--------QTP 279
A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG P
Sbjct: 838 AQHLLVLLTLTFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPLRAVQIGLDMDIVASSHP 897
Query: 280 NEDYT------DRYNAAIEDFISKLPGMA 302
+ T +NA +D + +PG+
Sbjct: 898 GDVMTAAGIEHRTFNALPQDMLRAVPGVT 926
>gi|347832217|emb|CCD47914.1| hypothetical protein [Botryotinia fuckeliana]
Length = 392
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 173/315 (54%), Gaps = 43/315 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + +R+VEVY+ + ++ V+V+F+ YG SVEEQ YLS RREK A
Sbjct: 52 LEEVKPRYIIMYEPDTSFVRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSTRREKDA 111
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEE----------SCG----------RVIVDMREFR 108
F LI+EK NM+V D E P+E + G RV+VD+REFR
Sbjct: 112 FTKLIKEKANMSVVLTLDAHGIEDPQEVFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 171
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDY+LSP+ICVERKSI DLI S + GRLY Q + M HY
Sbjct: 172 SSLPSLLHGRSMVVVPCMLTVGDYVLSPNICVERKSIKDLISSFKDGRLYNQAETMLEHY 231
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEFD K F L+ PF S A SSD+
Sbjct: 232 KSPMLLIEFDQGKSFTLE---------------------PFADLSGSLSSVSAANASSDL 270
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-Y 287
+KL LLTL FP+LR+IWSS PY TA++F LK EP A IG D+ +
Sbjct: 271 QSKLVLLTLAFPRLRIIWSSSPYQTAEIFESLKTQEPEPDPIQAVKIGLEGGASAEDQVF 330
Query: 288 NAAIEDFISKLPGMA 302
N +D + +PG+
Sbjct: 331 NREPQDMLRVVPGVT 345
>gi|320589465|gb|EFX01926.1| DNA repair protein [Grosmannia clavigera kw1407]
Length = 1038
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 178/318 (55%), Gaps = 44/318 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ Y D A IR++EVY+ + ++ V+ +FM YG SVEEQ YLS +RREK A
Sbjct: 687 LEEVKPRYIVMYEPDAAFIRRIEVYRSSHNDRNVRTYFMYYGGSVEEQKYLSAVRREKDA 746
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES------------CG-------------RVIVDM 104
F LIQE+ +M+V D + E++ G RV+VD+
Sbjct: 747 FTRLIQERASMSVVMTTDVSAAGSEDAQESFLRTVNTRIAGGGRLAASASAQQPRVVVDV 806
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REFRS LP LLH R + + P ++VGDY+LSP ICVERKS+SDLI S + GRL+ Q + M
Sbjct: 807 REFRSSLPSLLHGRSMVVVPCMLTVGDYVLSPHICVERKSVSDLISSFRDGRLFGQCESM 866
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
+HY +LLIEFD NK F L+ + H P ++ AA
Sbjct: 867 FQHYRDAMLLIEFDQNKSFTLEP------------FADLQHGPP------SIVAPAAAAA 908
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
++D+ +K+ LLTL FP+LR++W+S PY TA++F LK EP A G PN
Sbjct: 909 ATDLQSKIVLLTLAFPRLRIVWASSPYETAEIFERLKAQEPEPDPVAAVRAGLDPNARAD 968
Query: 285 DR-YNAAIEDFISKLPGM 301
D+ +N ++ ++ +PG+
Sbjct: 969 DQPFNQEPQEMLAAVPGV 986
>gi|308806754|ref|XP_003080688.1| repair endonuclease (ISS) [Ostreococcus tauri]
gi|116059149|emb|CAL54856.1| repair endonuclease (ISS) [Ostreococcus tauri]
Length = 987
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 169/332 (50%), Gaps = 67/332 (20%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P+ V+ Y+ D A IR++EVYQ EV VKV+FM Y S+EEQ YL ++RE A
Sbjct: 634 LNRIRPSFVVMYDPDAAFIRELEVYQAQHPEVTVKVYFMVYDTSLEEQKYLGSIKRESAA 693
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPE--------------------------------ESC 97
FE LI+ K +MAVP EQ+G + P S
Sbjct: 694 FENLIRTKQHMAVPAEQEGWTDSPNPLPLSLPRSIARQRIEESREVSTRKGGGTLTIRSS 753
Query: 98 GRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
++VDMREF S LP +LH G + P T+ VGDYIL+PDICVERK+I DLI S SGRL
Sbjct: 754 LEIVVDMREFMSALPCVLHAAGFKVRPTTLEVGDYILTPDICVERKAIPDLIQSFASGRL 813
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL 217
+QV+ MC++Y P+LLIEFD K F L L R F Q +
Sbjct: 814 ISQVEAMCKYYKTPVLLIEFDGEKAFALSAAADLPR---------------FPGQNH--- 855
Query: 218 SRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
I K+ +L + FPKLR+IWS TA++F LK EP EVA IG
Sbjct: 856 ----------IITKISMLAIQFPKLRMIWSRSMQMTAEVFASLKAIEPEPVLEVAQRIG- 904
Query: 278 TPNED------YTDRYNAAIEDFISKLPGMAE 303
P+ D D N D + +LPG+ +
Sbjct: 905 VPDADGDVYKLVQDDLNDMAVDLLRRLPGITD 936
>gi|225558074|gb|EEH06359.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 975
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 166/292 (56%), Gaps = 45/292 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ +V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 605 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTDREVRVYFLYYGGSVEEQRYLSAVRREKDA 664
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E R V+VD+REFRS
Sbjct: 665 FTKLIKEKGSMALTITHDRSTEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 724
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY Q + M +HY
Sbjct: 725 ALPCFLHGRSMIVVPCQLTVGDYILTPDICVERKSIRDLFSSLRNGRLYNQAETMLQHYK 784
Query: 170 KPLLLIEFDHNKPFELQG-----NYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
P+LLIEFD NK F N + S +++ + + P +Q
Sbjct: 785 TPVLLIEFDQNKSFTFDAFTSATNTHSSESLSSNLI---NPTNPKSVQH----------- 830
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 831 ------LLTLLTLAFPRLKIIWSSAPYQTAEIFEELKKNNPEPDPIRAVQIG 876
>gi|70984637|ref|XP_747825.1| DNA repair protein RAD1 [Aspergillus fumigatus Af293]
gi|66845452|gb|EAL85787.1| DNA repair protein RAD1, putative [Aspergillus fumigatus Af293]
gi|159122608|gb|EDP47729.1| DNA repair protein RAD1, putative [Aspergillus fumigatus A1163]
Length = 975
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 169/289 (58%), Gaps = 23/289 (7%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 599 LEEVRPRYIIMYEPDAAFIRRVEVYRSSHVGRNVRVYFIYYGGSVEEQRYLSAVRREKDS 658
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE--------------------SCGRVIVDMREFRS 109
F LI+EK +MAV D +P+E S RV+VD+REFRS
Sbjct: 659 FTKLIKEKGSMAVTLTHDKSQEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVDVREFRS 718
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + I P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 719 ALPSLLHGNNMIIVPCQLTVGDYILTPDICVERKSVRDLITSLRNGRLYNQAETMLQHYK 778
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
PLLLIEFD NK F + + FL ++ + + +S + SS +
Sbjct: 779 NPLLLIEFDQNKSFTFDA-FASASTPGTSFLTDYGFSSSGTGTTSLSVSSSLMNPSSPKS 837
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
A+ L LLTL FP+L++IWSS PY TA++F +LK+ EP A IG
Sbjct: 838 AQHLLVLLTLTFPRLKIIWSSSPYQTAEIFADLKKNNPEPDPLRAVQIG 886
>gi|116193577|ref|XP_001222601.1| hypothetical protein CHGG_06506 [Chaetomium globosum CBS 148.51]
gi|88182419|gb|EAQ89887.1| hypothetical protein CHGG_06506 [Chaetomium globosum CBS 148.51]
Length = 944
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 179/319 (56%), Gaps = 46/319 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK +
Sbjct: 597 LEEIKPKYIIMYQPDAAFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDS 656
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F +I+E+ M++ D E P+E+ G RV+VD+REFR
Sbjct: 657 FTRMIKERAGMSLVMTVDAHGAEDPQEAFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 716
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP +CVERKSISDLI S + GRL+ Q + M +HY
Sbjct: 717 SSLPSLLHGRSMIIVPCMLTVGDYILSPAVCVERKSISDLISSFKDGRLFAQCEAMFQHY 776
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P+LLIEFD NK F L+ PF +L G+ +A + D
Sbjct: 777 RSPMLLIEFDQNKSFTLE---------------------PFADLSGSLASVSASSAGAHD 815
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED---YT 284
+ +K+ LLTL FPKLR+IWSS PY TA++F LK +EP A G + D
Sbjct: 816 LQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKAQENEPDPIAAVRAGLDGDSDPQAEE 875
Query: 285 DRYNAAIEDFISKLPGMAE 303
+N ++ + +PG+ +
Sbjct: 876 QVFNTVPQEMLGAVPGVTQ 894
>gi|325095800|gb|EGC49110.1| DNA repair protein RAD1 [Ajellomyces capsulatus H88]
Length = 975
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 166/292 (56%), Gaps = 45/292 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ +V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 605 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTDREVRVYFLYYGGSVEEQRYLSAVRREKDA 664
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E R V+VD+REFRS
Sbjct: 665 FTKLIKEKGSMALTITHDRSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 724
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY Q + M +HY
Sbjct: 725 ALPCFLHGRSMIVVPCQLTVGDYILTPDICVERKSIRDLFSSLRNGRLYNQAETMLQHYK 784
Query: 170 KPLLLIEFDHNKPFELQG-----NYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
P+LLIEFD NK F N + S +++ + + P +Q
Sbjct: 785 TPVLLIEFDQNKSFTFDAFTSATNTHSSESLSSNLI---NPTNPKSVQH----------- 830
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 831 ------LLTLLTLAFPRLKIIWSSAPYQTAEIFEELKKNNPEPDPIRAVQIG 876
>gi|115450089|ref|NP_001048645.1| Os03g0100400 [Oryza sativa Japonica Group]
gi|108705675|gb|ABF93470.1| ERCC4 domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113547116|dbj|BAF10559.1| Os03g0100400 [Oryza sativa Japonica Group]
gi|215696969|dbj|BAG90963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768474|dbj|BAH00703.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624006|gb|EEE58138.1| hypothetical protein OsJ_09049 [Oryza sativa Japonica Group]
Length = 995
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 185/328 (56%), Gaps = 60/328 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ +K+KV+F+ Y +S E Q + S +RRE +AFE L
Sbjct: 655 KPSVIIVYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESL 714
Query: 74 IQEKTNMAVPTEQDG------VSTEPE----------ESCGR--------VIVDMREFRS 109
I++K+ M +P +Q+G ++ EPE ++ GR VIVDMREF S
Sbjct: 715 IRQKSLMMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMS 774
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY Q++ M R+Y
Sbjct: 775 SLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYK 834
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 835 IPVLLIEFSQDKS--------------------------FSFQSASEIGDDVSP--TNII 866
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR++WS + TA +F LK +DEP A +G P+ED
Sbjct: 867 SKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTNQDEPDESKAMRVG-VPSEDGVVENDV 925
Query: 283 YTDRYNAAIEDFISKLPGMAEWSRARTL 310
+ YN + +F+ +LPG+ + + R +
Sbjct: 926 RAENYNTSAIEFLRRLPGVTDSNYRRIM 953
>gi|301103506|ref|XP_002900839.1| DNA repair endonuclease XPF, putative [Phytophthora infestans
T30-4]
gi|262101594|gb|EEY59646.1| DNA repair endonuclease XPF, putative [Phytophthora infestans
T30-4]
Length = 946
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 187/331 (56%), Gaps = 63/331 (19%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
S+ L L P+ ++ Y+ D+A IR+VEV+ + ++++F+ Y ES E+Q+YLS+++RE
Sbjct: 601 SAFLEDLMPSCIVLYDPDMAFIREVEVFHASHV-APLEIYFLMYDESTEQQSYLSEIQRE 659
Query: 67 KKAFEYLIQEKTNMAVPTE---------------------QDGVSTEPEESCGRVIVDMR 105
K+AF+ LI +K ++ +P + G + + +V+VD+R
Sbjct: 660 KRAFDKLIHQKAHLMMPANVYDLPLHMKLRQQTVEYSMDTRTGGRAKSHRAGVKVVVDVR 719
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP +LHK GL++ PVT+ +GDY+LSP+ICVERKSISDL GSL SGRL+ Q + M
Sbjct: 720 EFRSALPSMLHKEGLFVLPVTLEIGDYVLSPEICVERKSISDLFGSLNSGRLFNQAESMR 779
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
R Y P+LLIEF QG K F LQ + +I+A
Sbjct: 780 RFYKTPVLLIEFT-------QG-------------------KAFSLQDVSEIGPEISA-- 811
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ-TPNED-- 282
++I +KL LL LHFP LRL+WS P+ T LF +K+ +DEP E A+++G P +D
Sbjct: 812 TNIVSKLTLLILHFPSLRLLWSRTPHATVDLFKIVKRYQDEPDMEAAAALGNGLPMDDSA 871
Query: 283 ----------YTDRYNAAIEDFISKLPGMAE 303
++ YN + D + KLPG+ E
Sbjct: 872 AQTNSGEGGLASNYYNTSSIDVLKKLPGINE 902
>gi|218191896|gb|EEC74323.1| hypothetical protein OsI_09607 [Oryza sativa Indica Group]
Length = 959
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 185/328 (56%), Gaps = 60/328 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ +K+KV+F+ Y +S E Q + S +RRE +AFE L
Sbjct: 619 KPSVIIVYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESL 678
Query: 74 IQEKTNMAVPTEQDG------VSTEPE----------ESCGR--------VIVDMREFRS 109
I++K+ M +P +Q+G ++ EPE ++ GR VIVDMREF S
Sbjct: 679 IRQKSLMMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMS 738
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY Q++ M R+Y
Sbjct: 739 SLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYK 798
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 799 IPVLLIEFSQDKS--------------------------FSFQSASEIGDDVSP--TNII 830
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR++WS + TA +F LK +DEP A +G P+ED
Sbjct: 831 SKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTNQDEPDESKAMRVG-VPSEDGVVENDV 889
Query: 283 YTDRYNAAIEDFISKLPGMAEWSRARTL 310
+ YN + +F+ +LPG+ + + R +
Sbjct: 890 RAENYNTSAIEFLRRLPGVTDSNYRRIM 917
>gi|353241018|emb|CCA72858.1| related to RAD1-component of the nucleotide excision repairosome
[Piriformospora indica DSM 11827]
Length = 921
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 184/311 (59%), Gaps = 26/311 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P +I + ++ +R++EVY+ + + V+V+ + S EE+ YL+++RREK+A
Sbjct: 586 LSDLMPRFIILFEPNLQFVRRIEVYKASNPGLTVRVYIQVWDTSAEEEMYLAEMRREKEA 645
Query: 70 FEYLIQEKTNMAV-----PTEQDG--------VSTEPEES----CGR--VIVDMREFRSE 110
FE+LI+E+ +M + P++ +ST GR V+VDMREFRS
Sbjct: 646 FEHLIRERASMVLVIQERPSDAQARTNSMIRTISTRNAGGKTLETGRPLVVVDMREFRSS 705
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LLH GL I P+T++VGDY+L+PD+ VERKSI DLI S SGRLYTQ + M HY +
Sbjct: 706 LPGLLHVGGLDIHPITLTVGDYVLTPDMVVERKSIPDLIASFNSGRLYTQCEMMSTHYKE 765
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
PLLLIEF+ +K F Q ++ A+ +++ KP G D + ++I +
Sbjct: 766 PLLLIEFEQDKSFAFQ--TLMNAKSGAQSTGKYNSKKP----GTGVPDAD-QMEGANIQS 818
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAA 290
KL LLTL FP+LR+IWSS PY TA++F +LK EP + A+SIG + N A
Sbjct: 819 KLVLLTLTFPRLRIIWSSSPYATAEIFADLKNNNKEPDPKRAASIGAEEEGLDSAGVNVA 878
Query: 291 IEDFISKLPGM 301
E+ + LPG+
Sbjct: 879 AEELLRALPGI 889
>gi|148008849|gb|ABQ52659.1| ultraviolet hypersensitive 1 [Arabidopsis thaliana]
Length = 935
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 173/297 (58%), Gaps = 47/297 (15%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 631 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 690
Query: 73 LIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDY 132
LI++K++M +P +Q VIVDMREF S LP +LH++G+ I PVT+ VGDY
Sbjct: 691 LIRQKSSMIIPVDQ-------------VIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDY 737
Query: 133 ILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLS 192
ILSP ICVERKSI DL S SGRL+ QV+ M R+Y P+LLIEF +K F Q S
Sbjct: 738 ILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQS----S 793
Query: 193 RDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYN 252
DI+ D P+ +I +KL LL LHFP+LRL+WS +
Sbjct: 794 SDIS-------DDVTPY-----------------NIISKLSLLVLHFPRLRLLWSRSLHA 829
Query: 253 TAQLFFELKQGRDEPSAE------VASSIGQTPNEDYTDRYNAAIEDFISKLPGMAE 303
TA++F LK +DEP V S G N+ + YN + +F+ +LPG+++
Sbjct: 830 TAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRLPGVSD 886
>gi|367021706|ref|XP_003660138.1| hypothetical protein MYCTH_74974 [Myceliophthora thermophila ATCC
42464]
gi|347007405|gb|AEO54893.1| hypothetical protein MYCTH_74974 [Myceliophthora thermophila ATCC
42464]
Length = 947
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 183/325 (56%), Gaps = 52/325 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR++EVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 595 LEEIKPKYIIMYEPDAAFIRRIEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSTVRREKDA 654
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 655 FTKLIKERASMSLVMTVDPHGAEDPQEAFLRTINTRIAGGGKLAATAQPPRVVVDVREFR 714
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSP +CVERKS+SDLI S + GRL+ Q + M HY
Sbjct: 715 SSLPSLLHGRSMIIVPCMLTVGDYILSPHVCVERKSVSDLISSFKDGRLFAQCEAMFAHY 774
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P+LLIEFD NK F L+ PF +L G+ A ++D
Sbjct: 775 RNPMLLIEFDQNKSFTLE---------------------PFADLSGSAASVSAANAGAND 813
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSIGQTPNEDYTD 285
+ +K+ LLTL FPKLR+IWSS PY TA++F LK EP A V + + + D D
Sbjct: 814 LQSKIVLLTLAFPKLRIIWSSSPYETAEIFERLKAQEPEPDPIAAVRAGLDREAAGDEGD 873
Query: 286 -------RYNAAIEDFISKLPGMAE 303
+NA ++ ++ +PG+ +
Sbjct: 874 AQAGGQQMFNAVPQEMLATVPGVTQ 898
>gi|3219304|dbj|BAA28847.1| MUS38 [Neurospora crassa]
Length = 892
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 181/329 (55%), Gaps = 58/329 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 533 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 592
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC----------------------GRVIVDMREF 107
F LI+E+ +M++ D E ES RV+VD+REF
Sbjct: 593 FTKLIRERASMSIVMTTDSHGVEDPESAFLRTINTRIAGGGKLAKATAQPPRVVVDVREF 652
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M +H
Sbjct: 653 RSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQH 712
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYY-LSRDIAAKS 225
Y P+LLIEFD NK F L+ PF +L G+ ++ + A
Sbjct: 713 YRNPMLLIEFDQNKSFTLE---------------------PFADLSGSLRSVNPENAGAQ 751
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSI--GQTPNE 281
K LLTL FPKLR+IWSS PY TA++F LK +EP A V + + G++P +
Sbjct: 752 RLAVQKSCLLTLAFPKLRIIWSSSPYETAEIFERLKALEEEPDPVAAVRAGLGEGESPED 811
Query: 282 DYTD---------RYNAAIEDFISKLPGM 301
+ +N ++ + K+PG+
Sbjct: 812 GVNEGKGAVNGGSTFNMEAQEMLGKVPGV 840
>gi|302689481|ref|XP_003034420.1| hypothetical protein SCHCODRAFT_14860 [Schizophyllum commune H4-8]
gi|300108115|gb|EFI99517.1| hypothetical protein SCHCODRAFT_14860 [Schizophyllum commune H4-8]
Length = 989
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 180/324 (55%), Gaps = 49/324 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P ++ +V R+VE+Y+ A + V+++ M YG S EE +L+ +R+EK A
Sbjct: 636 LAELQPKFIVMIEPNVDFFRRVELYRAANPGLGVRLYHMFYGNSSEEHKFLAGIRKEKNA 695
Query: 70 FEYLIQEKTNMAVPTEQDG----------------------VSTEPEESCGRVIVDMREF 107
FE LI+E+ +M +P +D ++TEP RVIVDMREF
Sbjct: 696 FERLIRERGSMLLPIFEDTRQQAGDDVIKTISTRIAGGRRELNTEP----SRVIVDMREF 751
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LLH L + P T++VGDYIL+PDICVERKS+SDL+ S SGRLYTQ + M H
Sbjct: 752 RSTLPSLLHASNLLVIPATLTVGDYILTPDICVERKSLSDLVSSFNSGRLYTQCEIMSVH 811
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEF+ K F L+ + D+ + + KP N Y + K D
Sbjct: 812 YKHPILLIEFEEEKAFSLE----IISDMKS-------YAKPV----NKYPPKKPNTKEDD 856
Query: 228 --------ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
I +KL LLTL FP++R+IWSS PY TA++F +LK+ EP A +IG
Sbjct: 857 KSPFSGPTIQSKLVLLTLTFPRVRIIWSSSPYATAEIFKDLKKDSTEPDPTTAIAIGAEE 916
Query: 280 NEDYTDRYNAAIEDFISKLPGMAE 303
+ D N A E+ + LPG+ +
Sbjct: 917 DPDVGAGVNTAAEELLRCLPGITQ 940
>gi|167516496|ref|XP_001742589.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779213|gb|EDQ92827.1| predicted protein [Monosiga brevicollis MX1]
Length = 880
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 187/322 (58%), Gaps = 54/322 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L L+P +V+ Y+ ++ +R++E++ S ++V + S +EQ YLS LR+
Sbjct: 525 LARLLLDLQPNNVLIYDLNIVVVRELELHAHVASH-PIEVALLTLDTSFQEQQYLSSLRQ 583
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPE---------------ESCGR---------VI 101
EK+AF Y+I K +MA P + G+ + E ++ GR VI
Sbjct: 584 EKEAFTYVISAKRSMAFPDGRLGLRQKDERQLALRPEDQNVSTRQAGGRRATAGTRPKVI 643
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRS LP +LH+ G+ +EPVT+ VGDY+LSP+ICVERKS+ DLIGSL+SGRLY Q
Sbjct: 644 VDMREFRSSLPSILHEFGIDVEPVTLLVGDYVLSPEICVERKSLPDLIGSLKSGRLYNQA 703
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
QM +HY KP+LL+E D +KP+ L +AA N L D+
Sbjct: 704 LQMSQHYPKPILLVEIDESKPYSL---------VAA----------------NESLGSDL 738
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
K++ A+L LLTLHFPKLR+ W + P++TAQLF+E+K+ EP E A++IG +
Sbjct: 739 EFKTT--LARLVLLTLHFPKLRIFWCNSPHSTAQLFYEMKRRGAEPDGEQAAAIGVDMED 796
Query: 282 DY--TDRYNAAIEDFISKLPGM 301
+ RY + E + +PG+
Sbjct: 797 GHLSDSRYASEPEAVLRSMPGV 818
>gi|8926611|gb|AAF81910.1|AF277377_1 5' repair endonuclease [Arabidopsis thaliana]
Length = 956
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 184/322 (57%), Gaps = 60/322 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQDGV------STE-PEESC---------GR--------VIVDMREFR 108
LI++K++M +P +QDG+ STE P S GR VIVDMREF
Sbjct: 675 LIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKEVEKETQVIVDMREFM 734
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRL+ QV+ M R+Y
Sbjct: 735 SSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYY 794
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q S DI+ D P+ +I
Sbjct: 795 RIPVLLIEFSQDKSFSFQS----SSDIS-------DDVTPY-----------------NI 826
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------ 282
+KL LL LH P+LRL+WS + TA++F LK +DEP A +G P+E+
Sbjct: 827 ISKLSLLVLHSPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVG-VPSEEGIIEND 885
Query: 283 -YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+++
Sbjct: 886 IRAENYNTSAVEFLRRLPGVSD 907
>gi|357114520|ref|XP_003559048.1| PREDICTED: DNA repair endonuclease UVH1-like [Brachypodium
distachyon]
Length = 991
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ K++V+F+ Y ES E Q + S +RRE +AFE L
Sbjct: 650 KPSVIIVYHPDITFVREIEVYKAENPSRKLRVYFLFYEESSEVQKFESSIRRENEAFESL 709
Query: 74 IQEKTNMAVPTEQDG------VSTEPE----------ESCGR--------VIVDMREFRS 109
I++K+ M +P +Q G ++ EPE ++ GR VIVDMREF S
Sbjct: 710 IRQKSLMMIPVDQSGRCIGPTLANEPEPVLSQNAVTRKAGGRKLPEKDMQVIVDMREFMS 769
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 770 SLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSITDLFQSFASGRLYNQVETMVRYYK 829
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 830 IPMLLIEFSQDKS--------------------------FSFQSASEVGDDVS--QTNII 861
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR++WS + TA +F LK +DEP A +G P+ED
Sbjct: 862 SKLSLLVLHFPRLRIVWSRSLHATADIFMSLKTNQDEPDENKAMRVG-VPSEDGIVEDDV 920
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+ +
Sbjct: 921 RAENYNTSAIEFLRRLPGVTD 941
>gi|449541351|gb|EMD32335.1| hypothetical protein CERSUDRAFT_118713 [Ceriporiopsis subvermispora
B]
Length = 967
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 192/353 (54%), Gaps = 51/353 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ ++P ++ Y + IR+VEVY+ + + V+V+F+QY +S EE YL +RREK++
Sbjct: 613 LQEIQPRFIVLYEPSLEFIRRVEVYRNSNPGLGVRVYFLQYHDSSEEVKYLRQVRREKES 672
Query: 70 FEYLIQEKTNMAVPTEQD------------------------GVSTEPEESCGRVIVDMR 105
FE LI+++ M +P ++ V+ EP RVIVD+R
Sbjct: 673 FERLIKDRGRMLMPIFEERRSGSSVNDSLIKTISSRIAGGRKDVTIEP----SRVIVDLR 728
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP LLH + I P T+++GDYIL+PDICVERKSI DLI S SGRLYTQ + M
Sbjct: 729 EFRSSLPSLLHAAQVNIVPATLTIGDYILTPDICVERKSIRDLISSFNSGRLYTQCEMMS 788
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
HY +P+LLIEF+ NK F + AK L++ + + + +S + S
Sbjct: 789 THYKQPVLLIEFEENKSFSFEAFE------EAKSLVKGGGKQAVSKKSS-VISDGPPSVS 841
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
+ I +KL LLTL FP++R+IWSS PY TA +F +LK EP + A IG + +
Sbjct: 842 ATIQSKLVLLTLTFPRVRIIWSSSPYATADVFQDLKLNSPEPDVDKAILIGAEDDPNVGA 901
Query: 286 RYNAAIEDFISKLPGMAEWSRARTLN----------------LEVLGLNPGQG 322
NAA E+ + LPG+ + ++ E+LG+ PG+
Sbjct: 902 GVNAAAEELLRSLPGITAKNVKHVMSKVNSVQELCELSLREVQEILGVEPGKA 954
>gi|294658416|ref|XP_460750.2| DEHA2F08932p [Debaryomyces hansenii CBS767]
gi|202953110|emb|CAG89091.2| DEHA2F08932p [Debaryomyces hansenii CBS767]
Length = 1089
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 175/322 (54%), Gaps = 49/322 (15%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L+ + P +I Y +++ IR+VE+YQ E K +FM YG SVEEQ +L +++EK
Sbjct: 742 SLLQEVSPAYIIMYEPNLSFIRRVEIYQAVNKESPAKTYFMYYGTSVEEQKHLMRIKKEK 801
Query: 68 KAFEYLIQEKTNMAVPTEQ--------------------DGVSTEPEESCGRVIVDMREF 107
AF LI+EK + E G EE RV+VD+REF
Sbjct: 802 DAFTKLIREKATLGKHFESAEDNNKFQLKRNQVANTRIAGGARFRTEEDEMRVVVDVREF 861
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LL++ G+ + P I+VGDYI+SP IC+ERK+I DLI S +SGRLY+Q +QM RH
Sbjct: 862 RSSLPNLLYRVGIKVVPCMITVGDYIVSPKICIERKAIPDLISSFKSGRLYSQCEQMFRH 921
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL--SRDIAAK- 224
Y P LLIEFD +K F + PF NY + + IA K
Sbjct: 922 YELPTLLIEFDESKSFSFE---------------------PFSDLRNYKVNATNPIATKL 960
Query: 225 -SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP--SAEVASSIGQTPNE 281
DI +KL +L + FPKL++IWSS PY TAQ+F ELK ++EP SA V+ + Q+
Sbjct: 961 QQQDIQSKLIMLLISFPKLKIIWSSSPYETAQIFLELKANQEEPDISAAVSKGVNQSIKI 1020
Query: 282 DYTD--RYNAAIEDFISKLPGM 301
+ YN D I +PG+
Sbjct: 1021 SSGEPPLYNDNAIDLIQNIPGI 1042
>gi|224138752|ref|XP_002326681.1| predicted protein [Populus trichocarpa]
gi|222834003|gb|EEE72480.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 171/309 (55%), Gaps = 47/309 (15%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ VI Y+ D+ +R++EVY+ K+KV+F+ Y +S E Q + + +RRE AFE
Sbjct: 654 LKPSVVIVYHPDMMFVREIEVYKAENPSKKLKVYFIFYEDSTEVQKFEASIRRENGAFES 713
Query: 73 LIQEKTNMAVPTEQ---DGVSTEPEESCGR--------VIVDMREFRSELPVLLHKRGLY 121
LI++K+ M +P +Q + GR VIVDMREF S LP +LH++G+
Sbjct: 714 LIRQKSLMMIPVDQPLGSSYQNSTRRAGGRKEIEKEMQVIVDMREFMSSLPNVLHQKGMS 773
Query: 122 IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
I PVT+ VGDYILSP ICVERKSI DL S SGRLY QV+ M R+Y P+LLIEF +K
Sbjct: 774 IIPVTLEVGDYILSPSICVERKSIQDLYMSFTSGRLYNQVETMVRYYRLPVLLIEFSQDK 833
Query: 182 PFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPK 241
F Q + D+ + I +KL LL LHFP+
Sbjct: 834 SFSFQSASDIGDDVTP----------------------------NSIISKLSLLALHFPR 865
Query: 242 LRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED-------YTDRYNAAIEDF 294
LR+IWS + TA++F LK +DEP A +G P+ED + YN + +F
Sbjct: 866 LRIIWSRSLHATAEIFASLKANQDEPDEMKAVRVG-VPSEDGIVENDVRAENYNTSAVEF 924
Query: 295 ISKLPGMAE 303
+ +LPG+ +
Sbjct: 925 LRRLPGVTD 933
>gi|167999329|ref|XP_001752370.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696765|gb|EDQ83103.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 880
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 177/323 (54%), Gaps = 58/323 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P VI Y++D+A +R++EVY+ +KV+F+ Y +S E + S +++E A
Sbjct: 538 LELLRPLYVIVYDSDMAFVRELEVYKAMNQGRPLKVYFLLYEDSTEASRFESSIKKENVA 597
Query: 70 FEYLIQEKTNMAVPTEQDG--------------VSTEPEESCGR--------VIVDMREF 107
FE LI++K M +P +QDG V+ + + GR V+VDMREF
Sbjct: 598 FENLIRQKATMTIPVDQDGRLLDASPTKATATGVTLDTRKGVGRKQAQKQMQVVVDMREF 657
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
S LP +LH++G+ I PVT+ VGDYILSPDICVERKSI+DL S SGRLY Q + M R+
Sbjct: 658 GSSLPSVLHQQGMKILPVTLEVGDYILSPDICVERKSIADLFSSFSSGRLYHQAETMSRY 717
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEF +K F LQ + DIA ++
Sbjct: 718 YKYPVLLIEFSQDKS--------------------------FSLQAASDIGEDIAP--AN 749
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED----- 282
I +KL LL LHFP+LR++WS + TA +F LK ++EP + A +G P ED
Sbjct: 750 IISKLSLLVLHFPRLRIVWSRSLHATADIFMALKSNQNEPDLDRAMRVG-VPTEDGLIEG 808
Query: 283 --YTDRYNAAIEDFISKLPGMAE 303
+ +N + + +LPG+++
Sbjct: 809 DIRAENFNTTAVELLRRLPGVSD 831
>gi|326502968|dbj|BAJ99112.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 998
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 180/321 (56%), Gaps = 60/321 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + S +RRE +AFE L
Sbjct: 657 KPSVIIVYHPDMTFVREIEVYKAENPSKKLKVYFLFYEESSEVQKFESSIRRENEAFESL 716
Query: 74 IQEKTNMAVPTEQDGV------STEPE----------ESCGR--------VIVDMREFRS 109
I++K+ M +P +Q G + EPE ++ GR VIVDMREF S
Sbjct: 717 IRQKSLMMIPVDQSGRCIGPTPANEPEPLFSQNSLTRKAGGRKATGKDMQVIVDMREFMS 776
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH++G+ I PVT+ VGDY+LSP ICVERKSI+DL S SGRLY QV+ M R+Y
Sbjct: 777 SLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSIADLYQSFASGRLYNQVEIMIRYYK 836
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEF +K F Q + D++ ++I
Sbjct: 837 IPVLLIEFSQDKS--------------------------FSFQSASEVGDDVSP--TNII 868
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------- 282
+KL LL LHFP+LR++WS + TA +F LK +DEP A+ +G P+ED
Sbjct: 869 SKLSLLVLHFPRLRIVWSRSLHATADIFMSLKSNQDEPDENKATRVG-VPSEDGVVEDDV 927
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+ +
Sbjct: 928 RAENYNTSAIEFLRRLPGVTD 948
>gi|392596648|gb|EIW85970.1| hypothetical protein CONPUDRAFT_140757 [Coniophora puteana
RWD-64-598 SS2]
Length = 999
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 171/317 (53%), Gaps = 26/317 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P I Y +RQ+EVY+ + + V+ + M Y S EEQ YL+ RREK+A
Sbjct: 631 LAELQPRFFIMYEPSTDFLRQIEVYRNSNPGLGVRAYIMTYHNSTEEQKYLTAQRREKEA 690
Query: 70 FEYLIQEKTNMAVP-------------------TEQDGVSTEPEESCGRVIVDMREFRSE 110
FE LI+E+ +M +P + G TE + +VIVDMREFRS
Sbjct: 691 FERLIRERGSMLLPIYESRQPVGKGHAMIKTISSRAAGGRTELSTAPSQVIVDMREFRST 750
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LLH G + P T++VGDYIL+PDICVERKSI DL+ S SGRLYTQ + M HY +
Sbjct: 751 LPSLLHAAGQLVVPATLTVGDYILTPDICVERKSIPDLVQSFNSGRLYTQCELMSVHYKQ 810
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
P+LLIEF+ NK F L+ ++ AK ++ KP + I +
Sbjct: 811 PILLIEFEENKSFSLEAISETTK-TYAKPSGKYPTKKPAAGASSAAADAGDPRVGPTIQS 869
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG------QTPNEDYT 284
KL LLTLHFP++R+IWSS P+ TA +F +LK EP A +G
Sbjct: 870 KLVLLTLHFPRVRIIWSSSPFATADIFADLKMNLPEPDPSKAILVGAEDQGASGSQGGQG 929
Query: 285 DRYNAAIEDFISKLPGM 301
D NAA E+ + LPG+
Sbjct: 930 DGVNAAAEELLQCLPGI 946
>gi|260941884|ref|XP_002615108.1| hypothetical protein CLUG_05123 [Clavispora lusitaniae ATCC 42720]
gi|238851531|gb|EEQ40995.1| hypothetical protein CLUG_05123 [Clavispora lusitaniae ATCC 42720]
Length = 1112
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 173/315 (54%), Gaps = 42/315 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P +I Y D++ IR+VE++Q KVFFM YG SVEEQ +L +R+EK+A
Sbjct: 770 LQEISPAYIIMYEPDLSFIRRVEIFQALSR--PAKVFFMYYGTSVEEQRHLVRIRKEKQA 827
Query: 70 FEYLIQEKTNMAVPTEQD--------------------GVSTEPEESCGRVIVDMREFRS 109
F LI+EK + D G + E RVIVD REFRS
Sbjct: 828 FTKLIKEKATLGKHFASDADNWKFRIKKTQVANTRIAGGATFRTENDEMRVIVDTREFRS 887
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LL++ G+ + P ++VGDY+LSP +CVERK+I DLI S +SGRLY Q +QM RHY
Sbjct: 888 SLPNLLYRVGIQVVPCMLTVGDYVLSPKLCVERKAIPDLISSFKSGRLYQQCEQMFRHYE 947
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F L+ F KP + LS I+ + +I
Sbjct: 948 SPVLLIEFDENKSFSLE---------------PFAEFKPPTSRATNPLSAKISKQ--EIQ 990
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD---R 286
+K+ L + FP+L+++WSS PY +AQ+F ELK + EP E A S G P+ +D
Sbjct: 991 SKITELLVSFPRLKILWSSSPYESAQIFLELKASQHEPDVEEALSKGVNPSITTSDGPPM 1050
Query: 287 YNAAIEDFISKLPGM 301
N + D + +PG+
Sbjct: 1051 INDDVVDILQSIPGI 1065
>gi|119181320|ref|XP_001241881.1| hypothetical protein CIMG_05777 [Coccidioides immitis RS]
Length = 981
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 167/289 (57%), Gaps = 28/289 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P ++ Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 602 LEEARPRYIVMYEPDAAFIRRVEVYRSSHTDRNVRVYFMYYGGSVEEQRYLSAVRREKDA 661
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D +P+E R V+VD+REFRS
Sbjct: 662 FTKLIKEKGSMAMSLTHDKNLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 721
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
L LLH + + P ++VGDYILSPDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 722 PLASLLHGHSMVLVPCQLTVGDYILSPDICVERKSIRDLISSLKTGRLYNQAETMLQYYK 781
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + S + F+ + P + S +I ++ +
Sbjct: 782 TPVLLIEFDQNKSFTFDA--FTSSTAPSAFVA----DNPTSFSAPSFSSGNIINPTNPRS 835
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 836 TQHLLVLLTLAFPRLKVIWSSSPHQTAEIFTELKKNDPEPDPIRAVQIG 884
>gi|320036899|gb|EFW18837.1| DNA repair protein RAD1 [Coccidioides posadasii str. Silveira]
Length = 988
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 167/289 (57%), Gaps = 28/289 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P ++ Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEEARPRYIVMYEPDAAFIRRVEVYRSSHTDRNVRVYFMYYGGSVEEQRYLSAVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D +P+E R V+VD+REFRS
Sbjct: 669 FTKLIKEKGSMAMSLTHDKNLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 728
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
L LLH + + P ++VGDYILSPDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 729 PLASLLHGHSMVLVPCQLTVGDYILSPDICVERKSIRDLISSLKTGRLYNQAETMLQYYK 788
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + S + F+ + P + S +I ++ +
Sbjct: 789 TPVLLIEFDQNKSFTFDA--FTSSTAPSAFVA----DNPTSFSAPSFSSGNIINPTNPRS 842
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 843 TQHLLVLLTLAFPRLKVIWSSSPHQTAEIFTELKKNDPEPDPIRAVQIG 891
>gi|303318499|ref|XP_003069249.1| ERCC4 domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240108935|gb|EER27104.1| ERCC4 domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 988
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 167/289 (57%), Gaps = 28/289 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P ++ Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEEARPRYIVMYEPDAAFIRRVEVYRSSHTDRNVRVYFMYYGGSVEEQRYLSAVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D +P+E R V+VD+REFRS
Sbjct: 669 FTKLIKEKGSMAMSLTHDKNLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 728
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
L LLH + + P ++VGDYILSPDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 729 PLASLLHGHSMVLVPCQLTVGDYILSPDICVERKSIRDLISSLKTGRLYNQAETMLQYYK 788
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + S + F+ + P + S +I ++ +
Sbjct: 789 TPVLLIEFDQNKSFTFDA--FTSSTAPSAFVA----DNPTSFSAPSFSSGNIINPTNPRS 842
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 843 TQHLLVLLTLAFPRLKVIWSSSPHQTAEIFTELKKNDPEPDPIRAVQIG 891
>gi|393220394|gb|EJD05880.1| hypothetical protein FOMMEDRAFT_166191 [Fomitiporia mediterranea
MF3/22]
Length = 1074
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 175/312 (56%), Gaps = 30/312 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ Y + IR++E Y+ + + V+V+ M Y S EE +L +RREK+A
Sbjct: 701 LEEIKPRFIVMYEPNPEFIRRIECYRSSNPGLAVRVYLMLYRNSCEEHKFLVGIRREKEA 760
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC------------------GRVIVDMREFRSEL 111
F LI+E++ M + +D S+ ES +VIVDMREFRS L
Sbjct: 761 FMRLIKERSTMVIALTEDRRSSSAGESIIKTISTRIAGGKQISSEPSQVIVDMREFRSTL 820
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LLH L + P T++VGDYIL+PDICVERKSI DL+ S SGRLYTQ + M HY +P
Sbjct: 821 PSLLHAAKLLVIPATLTVGDYILAPDICVERKSIPDLVQSFTSGRLYTQCELMSVHYKQP 880
Query: 172 LLLIEFDHNKPFELQGNYYLSRDI--AAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+LLIEF+ +K F L+ + + K+ + N P S++ + +S +
Sbjct: 881 ILLIEFEEHKSFSLESVDEIKSHVKNTGKYAAKKKPNDP---------SQETLSITS-VQ 930
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNA 289
AKL LLTL FP+LR++WSS PY TA +F +LK EP A +IG + + N
Sbjct: 931 AKLVLLTLSFPRLRIVWSSSPYATADIFKDLKAHHPEPDPARAIAIGAEEDPEAGAGINQ 990
Query: 290 AIEDFISKLPGM 301
A E+ + LPG+
Sbjct: 991 AAEELLRALPGI 1002
>gi|392864802|gb|EAS30529.2| DNA repair protein (rad1) [Coccidioides immitis RS]
Length = 988
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 167/289 (57%), Gaps = 28/289 (9%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P ++ Y D A IR+VEVY+ + ++ V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEEARPRYIVMYEPDAAFIRRVEVYRSSHTDRNVRVYFMYYGGSVEEQRYLSAVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D +P+E R V+VD+REFRS
Sbjct: 669 FTKLIKEKGSMAMSLTHDKNLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 728
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
L LLH + + P ++VGDYILSPDICVERKSI DLI SL++GRLY Q + M ++Y
Sbjct: 729 PLASLLHGHSMVLVPCQLTVGDYILSPDICVERKSIRDLISSLKTGRLYNQAETMLQYYK 788
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + S + F+ + P + S +I ++ +
Sbjct: 789 TPVLLIEFDQNKSFTFDA--FTSSTAPSAFVA----DNPTSFSAPSFSSGNIINPTNPRS 842
Query: 230 AK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 843 TQHLLVLLTLAFPRLKVIWSSSPHQTAEIFTELKKNDPEPDPIRAVQIG 891
>gi|359497108|ref|XP_002269337.2| PREDICTED: DNA repair endonuclease UVH1-like [Vitis vinifera]
Length = 964
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 178/327 (54%), Gaps = 58/327 (17%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
S+ L LKP+ VI Y+ D+ +R++E+Y+ K+KV+F+ Y +S E Q + + +RRE
Sbjct: 617 SNILDVLKPSIVIVYHPDMTFVREIEIYKTENPSKKLKVYFLFYEDSTEVQKFEASIRRE 676
Query: 67 KKAFEYLIQEKTNMAVPTEQD------GVSTEPE----------ESCGR--------VIV 102
AFE LI++K+ M +P +QD S EP+ ++ GR VIV
Sbjct: 677 NGAFESLIRQKSLMMIPVDQDVRGLGLNSSIEPQAITSQNSITRKAGGRKEVEKEIQVIV 736
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREF S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL GS SGRLY QV+
Sbjct: 737 DMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFGSFASGRLYHQVE 796
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
M R+Y P+LLIEF +K F Q + D+
Sbjct: 797 TMVRYYRIPVLLIEFSQDKS--------------------------FSFQSASEIGDDVT 830
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS------AEVASSIG 276
S I +KL LL LHFP+LR++WS + TA++F LK +DEP V S G
Sbjct: 831 PNS--IISKLSLLVLHFPRLRIVWSRSLHATAEIFASLKANQDEPDEAKAIRVGVPSEEG 888
Query: 277 QTPNEDYTDRYNAAIEDFISKLPGMAE 303
N+ + YN + + + +LPG+ +
Sbjct: 889 IVENDVRAENYNTSAVELLRRLPGVTD 915
>gi|327355286|gb|EGE84143.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ATCC 18188]
Length = 978
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 160/287 (55%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + + +V+V+F+ YG SVEEQ YLS +R+EK A
Sbjct: 605 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVYFLYYGGSVEEQRYLSAVRKEKDA 664
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +M++ D + +P+E R V+VD+REFRS
Sbjct: 665 FTKLIKEKGSMSLTINHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 724
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+P+ICVERKSI DL+ SL++GRLY Q + M +HY
Sbjct: 725 ALPSLLHGRSMVVVPCQLTVGDYILTPEICVERKSIRDLLSSLKNGRLYNQAETMLQHYK 784
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F F + + I
Sbjct: 785 TPVLLIEFDQNKSFTFDA---------------FTSATSTPSSESLSSNLINPTNPKSIQ 829
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 830 HLLTLLTLAFPRLKIIWSSAPFQTAEIFAELKKNNAEPDPIRAVQIG 876
>gi|239610211|gb|EEQ87198.1| DNA repair protein RAD1 [Ajellomyces dermatitidis ER-3]
Length = 925
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 160/287 (55%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + + +V+V+F+ YG SVEEQ YLS +R+EK A
Sbjct: 552 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVYFLYYGGSVEEQRYLSAVRKEKDA 611
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +M++ D + +P+E R V+VD+REFRS
Sbjct: 612 FTKLIKEKGSMSLTINHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 671
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+P+ICVERKSI DL+ SL++GRLY Q + M +HY
Sbjct: 672 ALPSLLHGRSMVVVPCQLTVGDYILTPEICVERKSIRDLLSSLKNGRLYNQAETMLQHYK 731
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F F + + I
Sbjct: 732 TPVLLIEFDQNKSFTFDA---------------FTSATSTPSSESLSSNLINPTNPKSIQ 776
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 777 HLLTLLTLAFPRLKIIWSSAPFQTAEIFAELKKNNAEPDPIRAVQIG 823
>gi|325185939|emb|CCA20443.1| DNA repair endonuclease XPF putative [Albugo laibachii Nc14]
Length = 936
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 192/362 (53%), Gaps = 83/362 (22%)
Query: 3 AQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSD 62
QD L + P +VI Y+ ++ IR++E++ +Q +V ++V+FM Y +SVEE+ YL +
Sbjct: 573 GQDALCFLNRMLPRAVILYDPNMTFIRELEMFHASQ-DVNMEVYFMLYHQSVEEKMYLQE 631
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEPE--------------ESCGR--------- 99
+ +EK AFE LI +K ++ +P+ V + + + GR
Sbjct: 632 ISQEKSAFERLIHQKAHLVIPSATMDVPFDVKMRSQHHANAYSMDTRTGGRANQRLKKLS 691
Query: 100 --VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
VIVD+REFRS LP +LHK+ L + P+T+ VGDYILSP ICVERKS+SDL GSL SGRL
Sbjct: 692 YQVIVDIREFRSALPSMLHKKALKVVPITLEVGDYILSPAICVERKSVSDLFGSLNSGRL 751
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL 217
Y QV+QM +HY P++LIEF K F LQ +
Sbjct: 752 YNQVEQMMKHYKIPVVLIEFSEKKA--------------------------FALQDPSEI 785
Query: 218 SRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
+ I+A S+I +KL LL +HFP LRL+WS P+ T LF +K+ EP +VA++IG
Sbjct: 786 TNTISA--SNIISKLVLLLIHFPTLRLLWSRSPHTTVDLFKVIKKNLQEPDVKVAAAIGS 843
Query: 278 TPNEDYTDR-----------------------YNAAIEDFISKLPGMAEW------SRAR 308
+ +++ + YN + + + KLPG+ ++ SR +
Sbjct: 844 GIDPEHSAKFTESSTLEAMEREQMGYAHAETFYNVSSVEILQKLPGITQYNYRHVLSRVK 903
Query: 309 TL 310
TL
Sbjct: 904 TL 905
>gi|261192729|ref|XP_002622771.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081]
gi|239589253|gb|EEQ71896.1| DNA repair protein RAD1 [Ajellomyces dermatitidis SLH14081]
Length = 925
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 160/287 (55%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + + +V+V+F+ YG SVEEQ YLS +R+EK A
Sbjct: 552 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVYFLYYGGSVEEQRYLSAVRKEKDA 611
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +M++ D + +P+E R V+VD+REFRS
Sbjct: 612 FTKLIKEKGSMSLTINHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 671
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+P+ICVERKSI DL+ SL++GRLY Q + M +HY
Sbjct: 672 ALPSLLHGRSMVVVPCQLTVGDYILTPEICVERKSIRDLLSSLKNGRLYNQAETMLQHYK 731
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F F + + I
Sbjct: 732 TPVLLIEFDQNKSFTFDA---------------FTSATSTPSSESLSSNLINPTNPKSIQ 776
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 777 HLLTLLTLAFPRLKIIWSSAPFQTAEIFAELKKNNAEPDPIRAVQIG 823
>gi|296084726|emb|CBI25868.3| unnamed protein product [Vitis vinifera]
Length = 1195
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 178/327 (54%), Gaps = 58/327 (17%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
S+ L LKP+ VI Y+ D+ +R++E+Y+ K+KV+F+ Y +S E Q + + +RRE
Sbjct: 848 SNILDVLKPSIVIVYHPDMTFVREIEIYKTENPSKKLKVYFLFYEDSTEVQKFEASIRRE 907
Query: 67 KKAFEYLIQEKTNMAVPTEQD------GVSTEPE----------ESCGR--------VIV 102
AFE LI++K+ M +P +QD S EP+ ++ GR VIV
Sbjct: 908 NGAFESLIRQKSLMMIPVDQDVRGLGLNSSIEPQAITSQNSITRKAGGRKEVEKEIQVIV 967
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREF S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL GS SGRLY QV+
Sbjct: 968 DMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFGSFASGRLYHQVE 1027
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
M R+Y P+LLIEF +K F Q + D+
Sbjct: 1028 TMVRYYRIPVLLIEFSQDKS--------------------------FSFQSASEIGDDVT 1061
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS------AEVASSIG 276
S I +KL LL LHFP+LR++WS + TA++F LK +DEP V S G
Sbjct: 1062 PNS--IISKLSLLVLHFPRLRIVWSRSLHATAEIFASLKANQDEPDEAKAIRVGVPSEEG 1119
Query: 277 QTPNEDYTDRYNAAIEDFISKLPGMAE 303
N+ + YN + + + +LPG+ +
Sbjct: 1120 IVENDVRAENYNTSAVELLRRLPGVTD 1146
>gi|449461269|ref|XP_004148364.1| PREDICTED: DNA repair endonuclease UVH1-like [Cucumis sativus]
gi|449505229|ref|XP_004162411.1| PREDICTED: DNA repair endonuclease UVH1-like [Cucumis sativus]
Length = 1003
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 179/323 (55%), Gaps = 58/323 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +L+P+ +I Y+ DV +RQ+EVY+ +KV+F+ Y +S E Q + + +RRE A
Sbjct: 661 LDTLEPSIIIAYHPDVTFVRQIEVYKAENPTKHLKVYFLFYDDSTEVQKFQASIRRENSA 720
Query: 70 FEYLIQEKTNMAVPTEQDGV------STEP--------EESCGR--------VIVDMREF 107
FE LI++K+ M +P +Q+G S EP ++ GR VIVDMREF
Sbjct: 721 FESLIRQKSLMMIPVDQNGYCLGLNSSVEPPATTQNSTRKAGGRKDVEKDMQVIVDMREF 780
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
S LP +LH++G+ I P+T+ VGDYILSP ICVERKSI DL S SGRLY QV+ M R+
Sbjct: 781 MSSLPNVLHQKGMRIIPITLEVGDYILSPLICVERKSIQDLFMSFASGRLYHQVETMVRY 840
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y P+LLIEF +K F Q + D+ ++
Sbjct: 841 YRIPVLLIEFSQDKS--------------------------FSFQSASDIGDDVTP--TN 872
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED----- 282
+ +KL LL LHFP+LR++WS + TA++F LK +DEP A +G P+E+
Sbjct: 873 VMSKLSLLVLHFPRLRILWSRSLHATAEIFASLKANQDEPDETKAVRVG-VPSEEGIVEN 931
Query: 283 --YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+ +
Sbjct: 932 DVRAENYNTSAVEFLRRLPGVTD 954
>gi|448089397|ref|XP_004196796.1| Piso0_004021 [Millerozyma farinosa CBS 7064]
gi|448093668|ref|XP_004197827.1| Piso0_004021 [Millerozyma farinosa CBS 7064]
gi|359378218|emb|CCE84477.1| Piso0_004021 [Millerozyma farinosa CBS 7064]
gi|359379249|emb|CCE83446.1| Piso0_004021 [Millerozyma farinosa CBS 7064]
Length = 1068
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 178/318 (55%), Gaps = 45/318 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+SL P+ +I ++ +++ IR++E+YQ +V+FM YG S+EEQ +L +++REK++
Sbjct: 723 LQSLGPSHIIMFDPNLSFIRRIEIYQSINRYSPARVYFMYYGSSIEEQKHLQEIKREKES 782
Query: 70 FEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMREFRS 109
F LI+E+ ++A T D G + EE +V+VD+REFRS
Sbjct: 783 FTKLIKERASLAKHFETSDDNYKISVKRHEVVNTRIAGGATFRTEEDELKVVVDVREFRS 842
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LL++ G+ + P ++VGDY++SP IC+ERK++ DLI S +SGRLY Q +QM RHY
Sbjct: 843 SLPNLLYRAGMKVIPCMLTVGDYVISPKICIERKAVPDLISSFKSGRLYAQCEQMFRHYE 902
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK--SSD 227
P LLIEFD +K F + F + ++ + +A K D
Sbjct: 903 VPTLLIEFDESKSFSFEP---------------FSDTRVKKVSA----ANPVATKLLQQD 943
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN----EDY 283
I +K+ +L + FPKL++IWSS PY TAQ+ ELK ++EP A S G + D
Sbjct: 944 IQSKIMMLLISFPKLKIIWSSSPYETAQILLELKSSQEEPDVTAALSKGVNTSIGIVNDE 1003
Query: 284 TDRYNAAIEDFISKLPGM 301
YN DFI +PG+
Sbjct: 1004 PPLYNEDAIDFIQNVPGI 1021
>gi|241116678|ref|XP_002401556.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ixodes
scapularis]
gi|215493146|gb|EEC02787.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ixodes
scapularis]
Length = 775
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 144/206 (69%), Gaps = 25/206 (12%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L L +++P ++ Y+ ++A +R++E+YQ +++ ++V+F+ Y +SV+EQ YL+ LRR
Sbjct: 499 LQQLLLTVEPKYIVLYDVNIATVREIEMYQATRAKEVLRVYFLMYEDSVDEQRYLTALRR 558
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG-------------VSTE----------PEESCG--RV 100
EK AFE+LI+EK M VP EQDG +S E P + G +V
Sbjct: 559 EKDAFEFLIREKNVMVVPEEQDGKGDYHPDLVDELSLSNETVSSRKAGGAPVKPSGSRKV 618
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVD+REFRS+LP L+H+RG+ ++PVTI VGDYIL+PDICVERKS++DLIGSL SGRLY Q
Sbjct: 619 IVDLREFRSDLPSLIHRRGISVQPVTIEVGDYILTPDICVERKSLNDLIGSLNSGRLYNQ 678
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQ 186
Q MCR+Y +P+LLIEF N+PF LQ
Sbjct: 679 AQSMCRYYKRPVLLIEFSQNQPFCLQ 704
>gi|429238685|ref|NP_587855.2| DNA repair endonuclease XPF [Schizosaccharomyces pombe 972h-]
gi|395398459|sp|P36617.2|RAD16_SCHPO RecName: Full=DNA repair protein rad16
gi|347834429|emb|CAA20694.2| DNA repair endonuclease XPF [Schizosaccharomyces pombe]
Length = 877
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 172/311 (55%), Gaps = 49/311 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +L+P VI +++D IR+VEVY+ + ++V+FM YG S+EEQ YL +RREK +
Sbjct: 542 LNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQKYLFSVRREKDS 601
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES----------CG-----------RVIVDMREFR 108
F LI+E++NMA+ D E +ES G RVIVD+REFR
Sbjct: 602 FSRLIKERSNMAIVLTADSERFESQESKFLRNVNTRIAGGGQLSITNEKPRVIVDLREFR 661
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + P + VGDYILSP ICVERKSI DLI SL +GRLY+Q + M +Y
Sbjct: 662 SSLPSILHGNNFSVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRLYSQCEAMTEYY 721
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF+ ++ F + PF LS +I +D+
Sbjct: 722 EIPVLLIEFEQHQSFT---------------------SPPFS-----DLSSEIG--KNDV 753
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYN 288
+KL LLTL FP LR++WSS Y T+ +F +LK EP A+SIG +D T+ YN
Sbjct: 754 QSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEAGQDSTNTYN 813
Query: 289 AAIEDFISKLP 299
A D + LP
Sbjct: 814 QAPLDLLMGLP 824
>gi|258572484|ref|XP_002545004.1| MUS38 protein [Uncinocarpus reesii 1704]
gi|237905274|gb|EEP79675.1| MUS38 protein [Uncinocarpus reesii 1704]
Length = 988
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 162/287 (56%), Gaps = 24/287 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +P +I Y + A IR++EVY+ + + V+VF M YG+SVEEQ +LS +RREK A
Sbjct: 606 LEEARPRYIIMYEPNAAFIRRIEVYRSSHTNRDVRVFVMYYGDSVEEQQFLSAVRREKDA 665
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRS 109
F LI+EK +MA+ D +P+E R V+VD+REFRS
Sbjct: 666 FTKLIKEKGSMAMSLTHDRSLEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 725
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
L LLH + + P ++VGDYIL+PDICVERKS+ DLI SL++GRLY Q + M +HY
Sbjct: 726 PLASLLHGHNMVLVPCQLTVGDYILTPDICVERKSVRDLISSLKNGRLYNQAETMLQHYK 785
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + S + F+ D+ F + + I
Sbjct: 786 TPVLLIEFDQNKAFTFDA--FTSSTNPSAFVT--DNLTSFATPSFSFGNIINPTNPKSIQ 841
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS P+ TA++F ELK+ EP A IG
Sbjct: 842 HLLVLLTLTFPRLKVIWSSSPHQTAEIFTELKKNNSEPDPIRAVQIG 888
>gi|295662641|ref|XP_002791874.1| DNA repair protein rad16 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279526|gb|EEH35092.1| DNA repair protein rad16 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 951
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/287 (44%), Positives = 162/287 (56%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + + +V+VFF+ Y SVEEQ YLS +RREK A
Sbjct: 588 LEEAKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVFFLYYSGSVEEQRYLSAVRREKDA 647
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E GR V+VD+REFRS
Sbjct: 648 FTKLIKEKGSMALTITHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 707
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY Q + M +HY
Sbjct: 708 ALPSLLHGRSMVVVPCQLTVGDYILTPDICVERKSIRDLHSSLKNGRLYNQAETMLQHYK 767
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + N P + L KS I
Sbjct: 768 NPVLLIEFDQNKSFTFDAFTSAT-------------NTPGSESFSTNLINPTNPKS--IQ 812
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 813 LLLTLLTLSFPRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQIG 859
>gi|356541275|ref|XP_003539104.1| PREDICTED: DNA repair endonuclease UVH1-like [Glycine max]
Length = 967
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 173/321 (53%), Gaps = 58/321 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ VI Y+ D+ +R++EVY+ ++KV+F+ Y +S E Q + + +RRE AFE
Sbjct: 626 LKPSIVIVYHPDMTFVREIEVYKAENPSKRLKVYFIFYEDSSEVQKFEASIRRENGAFES 685
Query: 73 LIQEKTNMAVPTEQDGVS-----------TEPE-----ESCGR--------VIVDMREFR 108
LI++K+ M +P +Q G S P+ ++ GR VIVDMREF
Sbjct: 686 LIRQKSLMMIPVDQSGHSLGLNSTLESDLNTPQNFVTRKAGGRKEAEKEMQVIVDMREFM 745
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRLY QV+ M R+Y
Sbjct: 746 SSLPNVLHQKGMNIIPVTLEVGDYILSPLICVERKSIQDLFMSFTSGRLYHQVETMVRYY 805
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q + D+ + I
Sbjct: 806 RIPVLLIEFSQDKSFSFQSASDIGDDVTP----------------------------NSI 837
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS------AEVASSIGQTPNED 282
+KL LL LHFP+LR+IWS + TA++F LK +DEP V S G N+
Sbjct: 838 ISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKAIRVGVPSEEGIVENDV 897
Query: 283 YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ + PG+ +
Sbjct: 898 RAENYNTSAVEFLRRCPGVTD 918
>gi|440634618|gb|ELR04537.1| hypothetical protein GMDG_06828 [Geomyces destructans 20631-21]
Length = 936
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 174/315 (55%), Gaps = 46/315 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y + IR+VEVY+ + ++ V+ ++M YG SVEEQ +L+ +RREK A
Sbjct: 596 LEEVKPRYIIMYEPEPTFIRRVEVYRSSHNDRNVRSYYMCYGGSVEEQRFLTAIRREKDA 655
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMR---------------------EFR 108
F LI+EK NM++ D E +E ++ R E R
Sbjct: 656 FTRLIKEKANMSIVMTVDAHGIEDQEDVFLRTINTRIAGGGRLAATATPPRVVVDVREVR 715
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDYILSPDIC+ERKSI DLI S + GRLYTQ + M +HY
Sbjct: 716 SSLPSLLHGRNMVIVPCMLTVGDYILSPDICIERKSIKDLISSFKDGRLYTQAETMLQHY 775
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAKSSD 227
P+LLIEFDHNK F L+ PF + QG+ A SSD
Sbjct: 776 KSPMLLIEFDHNKSFMLE---------------------PFGDAQGSSSALA--ANSSSD 812
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
+ +K+ LLTL FP+LR+IWSS PY TA++F LK + EP A +G + + D+
Sbjct: 813 LQSKIVLLTLAFPRLRIIWSSSPYQTAEIFESLKTQQAEPDPIAAVRVGLDKDMNAEDQV 872
Query: 287 YNAAIEDFISKLPGM 301
+N +D + +PG+
Sbjct: 873 FNREPQDMLRVVPGV 887
>gi|409076721|gb|EKM77091.1| hypothetical protein AGABI1DRAFT_122321 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 991
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 36/318 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ + V IR+VEVY+ + + V+V+ M Y +S EE YL+ +R+EK++
Sbjct: 627 LAEIQPRFIVMFEPSVEFIRRVEVYRSSYPGMAVRVYHMVYADSCEEHRYLAAIRKEKES 686
Query: 70 FEYLIQEKTNMAVPTEQ--------DG-----------------VSTEPEESCGRVIVDM 104
FE L++E+ +M + E+ +G ++TEP ++IVDM
Sbjct: 687 FERLVKERGSMLLTLEERRKPGGGGEGENVIRTISTRLAGGRRELTTEPP----KIIVDM 742
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REFRS LP LLH L + P T++VGDYIL+PDICVERKS+SDL+ S SGRLYTQ + M
Sbjct: 743 REFRSALPSLLHAAQLLVVPATLTVGDYILTPDICVERKSLSDLVSSFNSGRLYTQCEFM 802
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
HY P+LLIEF+ +K F L+ L AK ++ NKP LS + +
Sbjct: 803 SVHYKHPVLLIEFEEDKSFSLETISELKN--YAKPTQKYP-NKPSRPSTFNSLSSEPPSS 859
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI---GQTPNE 281
+ I +KL LLTL FP+LR IWS PY TA++F +LK + EP A +I G PN
Sbjct: 860 VTTIQSKLVLLTLSFPRLRTIWSQSPYATAEIFKDLKSNQPEPDPIKAITIGADGDDPN- 918
Query: 282 DYTDRYNAAIEDFISKLP 299
D +N E+ + LP
Sbjct: 919 DVGKGFNTVAEELVRALP 936
>gi|426191974|gb|EKV41913.1| hypothetical protein AGABI2DRAFT_212972 [Agaricus bisporus var.
bisporus H97]
Length = 988
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 26/313 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ + V IR+VEVY+ + + V+V+ M Y +S EE YL+ +R+EK++
Sbjct: 624 LAEIQPRFIVMFEPSVEFIRRVEVYRSSYPGMAVRVYHMVYADSCEEHRYLAAIRKEKES 683
Query: 70 FEYLIQEKTNMAVPTEQ---DGVSTEPEE---------SCGR---------VIVDMREFR 108
FE L++E+ +M + E+ G E E + GR +IVDMREFR
Sbjct: 684 FERLVKERGSMLLTLEERRKSGGGGEGENVIRTISTRLAGGRRELTTEPPKIIVDMREFR 743
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH L + P T++VGDYIL+PDICVERKS+SDL+ S SGRLYTQ + M HY
Sbjct: 744 SALPSLLHAAQLLVVPATLTVGDYILTPDICVERKSLSDLVSSFNSGRLYTQCEFMSVHY 803
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF+ +K F L+ L AK ++ NKP LS + + + I
Sbjct: 804 KHPVLLIEFEEDKSFSLETISELKN--YAKPTQKYP-NKPSRPSTFNSLSSEPPSSVTTI 860
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN--EDYTDR 286
+KL LLTL FP+LR IWS PY TA++F +LK + EP A +IG + +D
Sbjct: 861 QSKLVLLTLSFPRLRTIWSQSPYATAEIFKDLKSNQPEPDPIKAITIGADGDDPDDVGKG 920
Query: 287 YNAAIEDFISKLP 299
+N E+ + LP
Sbjct: 921 FNTVAEELVRALP 933
>gi|302771355|ref|XP_002969096.1| hypothetical protein SELMODRAFT_90549 [Selaginella moellendorffii]
gi|300163601|gb|EFJ30212.1| hypothetical protein SELMODRAFT_90549 [Selaginella moellendorffii]
Length = 933
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 177/336 (52%), Gaps = 71/336 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + P+ VI Y+ D+ +R++EV++ + ++KV+F+ Y ES E + + + ++RE A
Sbjct: 579 LDTTGPSYVIVYDPDMKFVREMEVFKAKHPQRRLKVYFLFYEESTEGKKFEASIQRETTA 638
Query: 70 FEYLIQEKTNMAVPTEQDGV---------------------------STEPEESCGR--- 99
FE LI++K +M +P +Q + S ++ GR
Sbjct: 639 FETLIRQKASMIIPVDQVSIQIIGYAFVYSWVGVLQTLDVPSPQAPSSVSSRKAGGRKNM 698
Query: 100 -----VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
++VDMREF S LP +LH++G+ I PVT+ VGDY+LSP+ICVERKSI+DL S S
Sbjct: 699 EKHMQIVVDMREFSSSLPCVLHQQGMRILPVTLEVGDYVLSPEICVERKSIADLYASFSS 758
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q + M R+Y P+LLIEF +K F LQ + DI
Sbjct: 759 GRLYHQAETMTRYYRLPVLLIEFSQDKSFSLQSANEVGDDIV------------------ 800
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
++I +K+ LL LHFP+LR++WS + TA+LF LK +DEP AE A
Sbjct: 801 ----------PANIVSKMSLLVLHFPRLRIVWSRSLHATAELFATLKANQDEPDAERAMR 850
Query: 275 IGQTPNED-------YTDRYNAAIEDFISKLPGMAE 303
+G P ED + YN + + +LPG+ +
Sbjct: 851 VG-VPTEDGLIEGDVRAENYNTTAVEMLRRLPGVTD 885
>gi|403418622|emb|CCM05322.1| predicted protein [Fibroporia radiculosa]
Length = 1024
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 196/375 (52%), Gaps = 79/375 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEV------------------YQCAQSEVKVKVFFMQYG 51
L+ ++P ++ + ++ +R++EV Y+ + + V+V+FM Y
Sbjct: 650 LQEIQPRFIVMFEPNLEFVRRIEVRPNASDSILIYERVTEQVYRNSNPGLGVRVYFMMYR 709
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQD------------------GVSTE- 92
S EE YL+ LRREK++FE LI+E+ +M +P ++ G E
Sbjct: 710 YSCEEGKYLTGLRREKESFERLIKERGSMLMPILEERRPGSGESLIKTISSRIAGGRKEL 769
Query: 93 -PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGS 151
E SC VIVDMREFRS LP LLH L + PVT++VGDYIL+PDICVERKSI DL+ S
Sbjct: 770 STETSC--VIVDMREFRSSLPSLLHASQLLVIPVTLTVGDYILTPDICVERKSIPDLVSS 827
Query: 152 LQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL 211
+GRL+TQ + M HY +P+LLIEF+ +K F L+ D+ K +
Sbjct: 828 FNNGRLHTQCELMSVHYKQPILLIEFEEHKSFSLEA----VTDV-----------KSYAK 872
Query: 212 QGNYYLSR--------DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQG 263
N Y ++ D S+ I A+L LLTLHFP++R+IWSS PY TA++F +LK
Sbjct: 873 SSNKYPTKKKTGTAPEDNERASASIQARLVLLTLHFPRIRIIWSSSPYATAEIFRDLKSN 932
Query: 264 RDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPG---------MAEWSRAR---TLN 311
EP A +G + + NA E+ + LPG M++ R LN
Sbjct: 933 SPEPDPAKAVVVGAEEDPEAGAGVNAVAEELLRSLPGITAKNVKHVMSKVGSVRELCDLN 992
Query: 312 L----EVLGLNPGQG 322
L ++LG+ PG+
Sbjct: 993 LPQVQDILGVEPGKA 1007
>gi|430812147|emb|CCJ30420.1| unnamed protein product [Pneumocystis jirovecii]
Length = 914
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 170/314 (54%), Gaps = 49/314 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ LKP +I Y D IR++EVY ++V+FM YG S+EEQ YL+ +R+EK +
Sbjct: 583 LKELKPKFIILYEPDPVIIRRIEVYNSVYKNALLRVYFMYYGNSIEEQKYLAAVRKEKDS 642
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE---------------------PEESCGRVIVDMREFR 108
F LIQEK NMAV QDG + E E+ ++IVD+REFR
Sbjct: 643 FTKLIQEKGNMAVLLTQDGKNDEYFNSILFKNTNTRFSGGSNYMINENLPKIIVDIREFR 702
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
+ LP LL+ + I P ++VGDYILSP +CVERKS+ DLI SL +GRLY Q + M ++Y
Sbjct: 703 NPLPSLLYGNHINIIPCQLTVGDYILSPSLCVERKSVMDLIKSLNNGRLYNQCEMMQQYY 762
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
+ +LLIEF+ N K F L+ ++ DI +++
Sbjct: 763 STFILLIEFEQN--------------------------KSFTLEPFTEITSDINI--NNL 794
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYN 288
+KL LLT+ FPKL++IWSS Y T +F ELK+ + EP A S+G ED N
Sbjct: 795 QSKLILLTMAFPKLKIIWSSSSYATCGIFVELKKNQSEPDPVKAVSLGLKDGEDSMAIVN 854
Query: 289 AAIEDFISKLPGMA 302
DF+ +P ++
Sbjct: 855 QGPHDFLLSIPKIS 868
>gi|302784390|ref|XP_002973967.1| hypothetical protein SELMODRAFT_232247 [Selaginella moellendorffii]
gi|300158299|gb|EFJ24922.1| hypothetical protein SELMODRAFT_232247 [Selaginella moellendorffii]
Length = 801
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 177/336 (52%), Gaps = 71/336 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + P+ VI Y+ D+ +R++EV++ + ++KV+F+ Y ES E + + + ++RE A
Sbjct: 447 LDTTGPSYVIVYDPDMKFVREMEVFKAKHPQRRLKVYFLFYEESTEGKKFEASIQRETTA 506
Query: 70 FEYLIQEKTNMAVPTEQDGV---------------------------STEPEESCGR--- 99
FE LI++K +M +P +Q + S ++ GR
Sbjct: 507 FETLIRQKASMIIPVDQVSIQIIGYAFVYSWVGVLQTLDVPSPQAPNSVSSRKAGGRKNM 566
Query: 100 -----VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
++VDMREF S LP +LH++G+ I PVT+ VGDY+LSP+ICVERKSI+DL S S
Sbjct: 567 EKHMQIVVDMREFSSSLPCVLHQQGMRILPVTLEVGDYVLSPEICVERKSIADLYASFSS 626
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q + M R+Y P+LLIEF +K F LQ + DI
Sbjct: 627 GRLYHQAETMTRYYRLPVLLIEFSQDKSFSLQSANEVGDDIVP----------------- 669
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
++I +K+ LL LHFP+LR++WS + TA+LF LK +DEP AE A
Sbjct: 670 -----------ANIVSKMSLLVLHFPRLRIVWSRSLHATAELFATLKSNQDEPDAERAMR 718
Query: 275 IGQTPNED-------YTDRYNAAIEDFISKLPGMAE 303
+G P ED + YN + + +LPG+ +
Sbjct: 719 VG-VPTEDGLIEGDVRAENYNTTAVEMLRRLPGVTD 753
>gi|354547879|emb|CCE44614.1| hypothetical protein CPAR2_404180 [Candida parapsilosis]
Length = 1001
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 180/329 (54%), Gaps = 51/329 (15%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L L P+ +I Y D++ IR++E+YQ QS+ KV+FM YG SVEEQ +L +++E
Sbjct: 644 ASFLEELSPSYIIMYEPDLSFIRRIEIYQAIQSQNPAKVYFMYYGNSVEEQKHLLRIKKE 703
Query: 67 KKAFEYLIQEKTNMA--VPTEQDGVSTEPEES-------CG-----------RVIVDMRE 106
K AF LI+EK N+ T D V + S G RV+VD+RE
Sbjct: 704 KDAFTRLIREKANLGKHFETADDNVKFQTHRSQVVNTRIAGGAKFRTEHDEMRVVVDVRE 763
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F S LP LL+K G+ + P I+VGDYI+SP IC+ERKSI DLIGS +SGRLY Q +QM +
Sbjct: 764 FGSSLPNLLYKIGIQVVPCMITVGDYIVSPQICIERKSIPDLIGSFKSGRLYNQCEQMFK 823
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK-- 224
HY P+LLIEFD NK + L +KF+ + + N LSR +
Sbjct: 824 HYDLPVLLIEFDENKS------FSLESFSESKFI---------KTKAN--LSRSMTTSLD 866
Query: 225 ---SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ---- 277
++ +++ L FPKL++IWSS PY TAQ+F ELK +DEP +A G
Sbjct: 867 NQLRQNLQSQIFSLLYSFPKLKIIWSSSPYETAQIFLELKANQDEPDVGMALEKGVNKSL 926
Query: 278 -TPNEDYTDR----YNAAIEDFISKLPGM 301
TP D N DFI +PG+
Sbjct: 927 ITPRGARVDGGPVILNDDPIDFIRNIPGI 955
>gi|330801891|ref|XP_003288956.1| hypothetical protein DICPUDRAFT_48253 [Dictyostelium purpureum]
gi|325080987|gb|EGC34520.1| hypothetical protein DICPUDRAFT_48253 [Dictyostelium purpureum]
Length = 902
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 63/324 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++PT++I Y+ DVA +RQ+EVY+ + ++V+ M Y EE Y+ L REK +
Sbjct: 566 LDEIRPTNIIIYDPDVALVRQIEVYKAENPGIPLRVYLMTYS-GTEEYRYIQQLNREKNS 624
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES----------------CG-------------RV 100
FE LI+EK+N+ + + Q+G E ++S G +V
Sbjct: 625 FEKLIREKSNLVIDSNQEGKLDEIDQSKLEILDNSNVSYRNSRIGGLKRTTLIPGQKRKV 684
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
I+D EF+S LPV+LH G I P+ + +GDYI SP C+ERKS+SDLIGS SGRLYTQ
Sbjct: 685 IIDSHEFKSSLPVVLHNHGYEIIPLRLEMGDYIASPYHCIERKSVSDLIGSFSSGRLYTQ 744
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLS-RDIAAKFLIEFDHNKPFELQGNYYLSR 219
++ M RHY P+LLIEFD N+PF Y++ +I+ F
Sbjct: 745 IEAMNRHYRNPILLIEFDLNQPF-----YFVPLEEISQSF-------------------- 779
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
I+ +S +++KL +LT FP+LR+IWS Y+TA ++ LK+G+ EP + I +T
Sbjct: 780 -ISIQS--LSSKLVILTKAFPRLRVIWSRSSYSTANIYDRLKEGQPEPDPSTVNVIPETD 836
Query: 280 NEDYTDRYNAAIEDFISKLPGMAE 303
+ D YN +D + LPG+ +
Sbjct: 837 D----DNYNFNAQDVLKNLPGVTD 856
>gi|344230428|gb|EGV62313.1| hypothetical protein CANTEDRAFT_131677 [Candida tenuis ATCC 10573]
Length = 965
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 172/312 (55%), Gaps = 39/312 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KPT +IFY +++ IR+VE YQ KV+ M YG S EEQ+ L +++EK+A
Sbjct: 625 LNEFKPTHIIFYEPNLSFIRRVENYQGVHFNEPAKVYMMFYGTSAEEQSSLVQMKKEKEA 684
Query: 70 FEYLIQEKTNMA--VPTEQD-----------------GVSTEPEESCGRVIVDMREFRSE 110
F LI+EK N++ T++D G + E+ RVIVD+REF S
Sbjct: 685 FTRLIREKANLSKHFETKEDTKFTITKKHVVNTRIAGGQRFQTEDDEFRVIVDVREFNSS 744
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LL++ G + P +++GDYIL+P ICVERK+I DLI S QSGRLY Q +QM R+Y
Sbjct: 745 LPNLLYRVGSKVIPCMLTIGDYILTPKICVERKAIPDLIASFQSGRLYNQCEQMSRYYEL 804
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
P+LLIEFD K F + + SR P N +L I
Sbjct: 805 PVLLIEFDEEKSFSFEP-FSESRTRPG---------APVSNNTNRFL-------QDHIQN 847
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR-YNA 289
K+ +L + FPKL++IWSS PY TAQ+F ELK G + P ++ S+I + N D + YN
Sbjct: 848 KITMLLISFPKLKIIWSSSPYQTAQIFIELKAGEEAP--DITSAINKGLNSDESPALYNE 905
Query: 290 AIEDFISKLPGM 301
D + +PG+
Sbjct: 906 GAIDLLQSIPGI 917
>gi|149240381|ref|XP_001526066.1| hypothetical protein LELG_02624 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450189|gb|EDK44445.1| hypothetical protein LELG_02624 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1053
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 179/322 (55%), Gaps = 46/322 (14%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L L P+ +I Y D++ IR+VE+YQ + +V+FM YG+SVEEQ +L +++E
Sbjct: 704 ASFLEELSPSFIIMYQPDLSFIRRVEIYQATRGVDAAQVYFMYYGDSVEEQKHLLRIKKE 763
Query: 67 KKAFEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMRE 106
K+AF LI+EK N+ T +D G E RV+VD RE
Sbjct: 764 KEAFTRLIKEKANLGKHFETSEDNYKFRIQKNHVVNTRIAGGAHFRTERDEMRVVVDTRE 823
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F S LP LL++ G+ + P ++VGDYI+SP IC+ERKSI DLI S +SGRLYTQ +QM R
Sbjct: 824 FGSSLPNLLYRIGIQVVPCMLTVGDYIVSPRICIERKSIPDLISSFKSGRLYTQCEQMFR 883
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK-S 225
+Y P LLIEFD NK F L+ AKF L+ LS + K
Sbjct: 884 YYDLPTLLIEFDENKSFSLEPFS------EAKF-----------LKARTSLSSSLDPKLR 926
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
++ +++ L FPKL++IWSS PY TAQ+F ELK ++EP +V ++ + N+
Sbjct: 927 QNLQSQILSLLYSFPKLKIIWSSSPYETAQIFLELKANQEEP--DVGKALDKGVNKAVVT 984
Query: 286 R------YNAAIEDFISKLPGM 301
+ YN DFI +PG+
Sbjct: 985 QDGGPPIYNDDPIDFIQNIPGI 1006
>gi|393226773|gb|EJD34490.1| hypothetical protein AURDEDRAFT_188995 [Auricularia delicata
TFB-10046 SS5]
Length = 984
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 191/353 (54%), Gaps = 60/353 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP ++ + + IR++EVY+ + V+V+FM Y +S EE YL+ +R+EK
Sbjct: 637 LAEVKPRFIVMFEPNQEFIRRIEVYRSLSPGLAVRVYFMLYEKSAEEVKYLTAIRKEKDC 696
Query: 70 FEYLIQEKTNMAV-------PTEQD-----------GVSTEPEESCGRVIVDMREFRSEL 111
FE LI+E+ +M + P+ D G E + +VIVD RE S L
Sbjct: 697 FERLIKERGSMLMVLGEDVRPSRGDLMIKTLSTRIAGGGKVVETTPPQVIVDSRELNSSL 756
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LL+ G+ I PVT++VGDYILSPD+CVERKS+ DL+ S +GRLYTQ + M HY P
Sbjct: 757 PGLLYNAGVQIIPVTLTVGDYILSPDMCVERKSLPDLVASFNNGRLYTQCELMSAHYKHP 816
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD---- 227
+LLIEF+ +K F S +I ++ K + G Y + A K+SD
Sbjct: 817 MLLIEFEEHKAF--------SMEIVSEV-------KSYAKGGKYPAKK--APKASDDSIS 859
Query: 228 ---ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
+ +KL LLTL FP+LR+IWSS PY++A +F +LK EP AE A +IG E
Sbjct: 860 ITAVQSKLVLLTLSFPRLRIIWSSSPYSSADIFKDLKANEREPDAEKAMAIGAEDGE--L 917
Query: 285 DRYNAAIEDFISKLPGMAE------WSRARTLN----------LEVLGLNPGQ 321
NAA ED + +PG+ S+ R++ ++LG+ PG+
Sbjct: 918 AATNAAAEDLLRSIPGITAKNVKHVMSKIRSVRELCELELSRIQDILGIEPGK 970
>gi|357482211|ref|XP_003611391.1| DNA repair endonuclease UVH1 [Medicago truncatula]
gi|355512726|gb|AES94349.1| DNA repair endonuclease UVH1 [Medicago truncatula]
Length = 984
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 176/325 (54%), Gaps = 60/325 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L LKP+ ++ Y+ D+ +R++EVY+ ++KV+F+ Y +S E Q + + +RRE A
Sbjct: 640 LDILKPSIIVVYHPDMTFVREIEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGA 699
Query: 70 FEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VIVDMR 105
FE LI++K+ M +P +Q G ++ ++ GR +IVDMR
Sbjct: 700 FESLIRQKSMMMIPIDQSGHGLGFNSTLDSDLNTTQNSITRKAGGRKEVDKEMQIIVDMR 759
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EF S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRLY QV+ M
Sbjct: 760 EFMSSLPNILHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFQSFTSGRLYNQVETMA 819
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
R+Y P+LLIEF +K F Q + D+ S
Sbjct: 820 RYYKIPVLLIEFSQDKS--------------------------FSFQSASDIGDDVTPNS 853
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED--- 282
I +KL LL LHFP+LR+IWS + T+++F LK +DEP A +G P+E+
Sbjct: 854 --IISKLSLLALHFPRLRIIWSRSLHATSEIFASLKANQDEPDETKAMRVG-VPSEEGIV 910
Query: 283 ----YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+ +
Sbjct: 911 ESDVRAENYNTSAVEFLRRLPGVTD 935
>gi|448522205|ref|XP_003868637.1| Rad1 single-stranded DNA endonuclease [Candida orthopsilosis Co
90-125]
gi|380352977|emb|CCG25733.1| Rad1 single-stranded DNA endonuclease [Candida orthopsilosis]
Length = 1010
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 184/330 (55%), Gaps = 54/330 (16%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L L P+ +I Y D++ IR++E+YQ +++ KV+FM YG SVEEQ +L +++E
Sbjct: 654 ASFLEELSPSHIIMYEPDLSFIRRIEIYQAMKADNPAKVYFMYYGNSVEEQKHLLRIKKE 713
Query: 67 KKAFEYLIQEKTNMA--VPTEQDGVSTEP------------------EESCGRVIVDMRE 106
K AF LI+EK N++ T D V + E+ RV+VD+RE
Sbjct: 714 KDAFTRLIREKANLSKHFETADDNVKFQTHKSQVVNTRIAGGAKFRTEQDEMRVVVDVRE 773
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F S LP LL+K G+ + P I+VGDYI+SP IC+ERKSI DLIGS +SGRLY Q +QM +
Sbjct: 774 FGSSLPNLLYKIGIQVVPCMITVGDYIVSPQICIERKSIPDLIGSFKSGRLYNQCEQMFK 833
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
+Y P+LLIEFD NK + L +KF+ + + N LS+ A+ +
Sbjct: 834 YYDLPVLLIEFDENKS------FSLESFSESKFI---------KTKAN--LSKSTASLDN 876
Query: 227 DITAKLQ----LLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
+ LQ L FPKL++IWSS PY TAQ+F ELK +DEP +V ++ + N +
Sbjct: 877 KLRQNLQSQIFSLLYSFPKLKIIWSSSPYETAQIFLELKANQDEP--DVGMALDKGANRN 934
Query: 283 YTDRYNAAIE-----------DFISKLPGM 301
+ A + DFI +PG+
Sbjct: 935 LLTQGGGANDGGPAILNDDPIDFIRSVPGI 964
>gi|241952392|ref|XP_002418918.1| DNA repair protein Rad1 homologue, putative [Candida dubliniensis
CD36]
gi|223642257|emb|CAX44226.1| DNA repair protein Rad1 homologue, putative [Candida dubliniensis
CD36]
Length = 970
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 175/328 (53%), Gaps = 56/328 (17%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L+ L P+ +I Y ++A IR+VE+YQ E +FM YG+SVEE+ +L ++RE
Sbjct: 619 ASILQELHPSHIIIYEQNLAFIRRVEMYQAINHENPAHAYFMYYGDSVEEEKHLRRVKRE 678
Query: 67 KKAFEYLIQEKTNMA--VPTEQDGVS--------------------TEPEESCGRVIVDM 104
K+AF LI+EK + T+ D TE +ES VIVD
Sbjct: 679 KEAFTKLIKEKATLGKHFETKDDNAKFQINRNNIANTRIAGGSKFKTETDES--NVIVDA 736
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REF S P LL++ G+ + P +++GDYILSP ICVERKSISDL+ S SGRL+ Q +QM
Sbjct: 737 REFGSSTPNLLYQIGINVIPCMLTIGDYILSPKICVERKSISDLVQSFSSGRLFQQCKQM 796
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
RHY P+LLIEFD + F L+ PF ++RD + +
Sbjct: 797 FRHYELPVLLIEFDGTQSFSLE---------------------PFSEVKYTRITRDESVE 835
Query: 225 S-------SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
S S+I +K+ L FPKL++IWSS PY TAQ+F ELK ++EP A G
Sbjct: 836 SKIELNEKSNIQSKILSLLYAFPKLKIIWSSSPYETAQIFIELKANQEEPDVGTALDKGA 895
Query: 278 TPNEDYTD----RYNAAIEDFISKLPGM 301
+ + D YN DFI +PG+
Sbjct: 896 NKSIETGDGNPPMYNDDAIDFIQNIPGI 923
>gi|225678147|gb|EEH16431.1| DNA repair protein RAD1 [Paracoccidioides brasiliensis Pb03]
Length = 964
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 161/287 (56%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP +I Y D A IR+VEVY+ + + +V+VFF+ Y SVEEQ YLS +RREK A
Sbjct: 601 LEEAKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVFFLYYSGSVEEQRYLSAVRREKDA 660
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E GR V+VD+REFRS
Sbjct: 661 FTKLIKEKGSMALTITHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 720
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY Q + M +HY
Sbjct: 721 ALPSLLHGRSMVVVPCQLTVGDYILTPDICVERKSIRDLQSSLKNGRLYNQAETMLQHYK 780
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + N P + L KS I
Sbjct: 781 NPVLLIEFDQNKSFTFDAFTSAT-------------NTPGSESFSTNLINPTNPKS--IQ 825
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL F +L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 826 LLLTLLTLSFQRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQIG 872
>gi|255580807|ref|XP_002531224.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ricinus
communis]
gi|223529184|gb|EEF31160.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ricinus
communis]
Length = 887
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 175/322 (54%), Gaps = 60/322 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ +++V+F+ Y +S E Q + + +RRE AFE
Sbjct: 546 LKPSVIIVYHPDMTFVREIEVYKAENPSKRLRVYFLFYEDSTEVQKFEAGIRRENGAFES 605
Query: 73 LIQEKTNMAVPTEQD----------------GVSTEPEESCGR--------VIVDMREFR 108
LI++K+ M +P +Q+ ++ ++ GR VIVDMREF
Sbjct: 606 LIRQKSMMMIPVDQNMNCLGLNSSVDSQPSSSLNAITRKAGGRKEVEKEMQVIVDMREFM 665
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRLY QV+ M R+Y
Sbjct: 666 SSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFMSFTSGRLYHQVETMTRYY 725
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q +S D+ S I
Sbjct: 726 RIPVLLIEFSQDKS--------------------------FSFQSASDISDDVTPNS--I 757
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------ 282
+KL LL LHFP+LR+IWS + TA +F LK +DEP A +G P+E+
Sbjct: 758 ISKLSLLALHFPRLRIIWSRSLHATADIFAALKANQDEPDEARAMRVG-VPSEEGIIEND 816
Query: 283 -YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+ +
Sbjct: 817 VRAENYNTSAVEFLRRLPGVTD 838
>gi|344302453|gb|EGW32727.1| hypothetical protein SPAPADRAFT_70727 [Spathaspora passalidarum
NRRL Y-27907]
Length = 972
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 179/323 (55%), Gaps = 50/323 (15%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L+ L P+ +I Y ++ +R+VE++Q + KVF + YG S+EEQ +L +++EK
Sbjct: 624 SLLQELSPSHIIMYEPNLTFMRRVEIFQAINHDNPAKVFLLYYGNSIEEQKHLIRIKKEK 683
Query: 68 KAFEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMREF 107
+AF LI+EK N+ T +D G E RV+VD+REF
Sbjct: 684 EAFTKLIKEKGNLGQHFETAEDNYRFQIQRNQVVNTRIAGGARFRTEADEMRVVVDVREF 743
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
RS LP LL++ G+ + P I+VGDYI+SP ICVERKSI DLIGS +SGRL+ Q +QM ++
Sbjct: 744 RSSLPNLLYRIGIKVVPCMITVGDYIVSPKICVERKSIPDLIGSFKSGRLFHQCEQMFKY 803
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG---NYYLSRDIAAK 224
Y P LLIEFD NK F L+ F +K F+ G N ++ I
Sbjct: 804 YELPTLLIEFDENKSFSLE---------------PFSESK-FQRAGAPRNPTVTNKI--- 844
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
+I +KL L + FPKL++IWSS PY TAQ+F ELK ++EPS V S++ + N
Sbjct: 845 QQNIQSKLLSLLVAFPKLKIIWSSSPYETAQIFLELKANQEEPS--VGSAMDKGVNRSVV 902
Query: 285 DR------YNAAIEDFISKLPGM 301
+N DFI +PG+
Sbjct: 903 TEDGGPPIFNDDPIDFIQNIPGI 925
>gi|146419736|ref|XP_001485828.1| hypothetical protein PGUG_01499 [Meyerozyma guilliermondii ATCC
6260]
Length = 1020
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 49/320 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
++ L P+ +I Y ++ IR VE+YQ + K +FM YG SVEEQ +L +++EK A
Sbjct: 675 IQELSPSHIIMYEPNLPFIRAVEIYQAINKDTPAKTYFMYYGTSVEEQKHLMQIKKEKDA 734
Query: 70 FEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMREFRS 109
F LI+EK N+ T +D G + E RVIVD+REF S
Sbjct: 735 FTRLIREKANLGRHYETAEDNNKFRLQRSDVVNTRIAGGANFRTESDEFRVIVDIREFTS 794
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +L++ G+ + P +++GDYI++P +CVERK+I DLI S +SGRLYTQ + M RHY
Sbjct: 795 SLPGILYRAGIKVVPCMLTIGDYIVTPKVCVERKAIPDLISSFKSGRLYTQCEHMFRHYE 854
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK--SSD 227
P LLIEFD +K F + F +P +GN IA K D
Sbjct: 855 LPTLLIEFDGSKSFSFE---------------PFADIRP--QKGNA--PNAIATKLLKQD 895
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
I +KL +L L FPKL++IWS PY TAQ+F E+K ++EP ++ S+I + N+ T
Sbjct: 896 IQSKLMMLLLAFPKLKIIWSFSPYETAQIFLEIKSKQEEP--DIDSAISKGVNQSLTTEK 953
Query: 287 -----YNAAIEDFISKLPGM 301
+N D I +PG+
Sbjct: 954 GEPPVFNEDAIDLIQNIPGI 973
>gi|190345504|gb|EDK37401.2| hypothetical protein PGUG_01499 [Meyerozyma guilliermondii ATCC
6260]
Length = 1020
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 49/320 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
++ L P+ +I Y ++ IR VE+YQ + K +FM YG SVEEQ +L +++EK A
Sbjct: 675 IQELSPSHIIMYEPNLPFIRAVEIYQAINKDTPAKTYFMYYGTSVEEQKHLMQIKKEKDA 734
Query: 70 FEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMREFRS 109
F LI+EK N+ T +D G + E RVIVD+REF S
Sbjct: 735 FTRLIREKANLGRHYETAEDNNKFRLQRSDVVNTRIAGGANFRTESDEFRVIVDIREFTS 794
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +L++ G+ + P +++GDYI++P +CVERK+I DLI S +SGRLYTQ + M RHY
Sbjct: 795 SLPGILYRAGIKVVPCMLTIGDYIVTPKVCVERKAIPDLISSFKSGRLYTQCEHMFRHYE 854
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK--SSD 227
P LLIEFD +K F + F +P +GN IA K D
Sbjct: 855 LPTLLIEFDGSKSFSFE---------------PFADIRP--QKGN--APNAIATKLLKQD 895
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR- 286
I +KL +L L FPKL++IWS PY TAQ+F E+K ++EP ++ S+I + N+ T
Sbjct: 896 IQSKLMMLLLAFPKLKIIWSFSPYETAQIFLEIKSKQEEP--DIDSAISKGVNQSLTTEK 953
Query: 287 -----YNAAIEDFISKLPGM 301
+N D I +PG+
Sbjct: 954 GEPPVFNEDAIDLIQNIPGI 973
>gi|170108792|ref|XP_001885604.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639480|gb|EDR03751.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 994
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 178/311 (57%), Gaps = 25/311 (8%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ + ++ IR++EVY+ + + V+V+ M Y S EE YL+ +RREK++
Sbjct: 631 LAEIEPKFIVMFEPNMEFIRRIEVYRSSSPGLGVRVYHMIYENSCEEHKYLAGIRREKES 690
Query: 70 FEYLIQEKTNMAVP---TEQDGVSTEPEESCG---------------RVIVDMREFRSEL 111
FE LI+E+ M +P ++G + E ++ RVIVDMREFRS L
Sbjct: 691 FERLIKERGTMLMPLLEERREGANEEILKTISSRVAGGRRTLNKEPSRVIVDMREFRSTL 750
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LLH L + P T+++GDYIL+P+ICVERKS+SDLI S SGRLYTQ + M HY P
Sbjct: 751 PSLLHASSLLVIPATLTIGDYILTPEICVERKSLSDLISSFNSGRLYTQCELMSVHYKHP 810
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEF+ +K F L + K + H P + +G + + I +K
Sbjct: 811 ILLIEFEEDKAFTLDTVTDM------KSYAKPSHKYPPK-KGPSGNGPESPYSGATIQSK 863
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAI 291
+ LLTL FP+LR+IWSS P+ T+++F +LK EP A ++G + + N A
Sbjct: 864 IVLLTLTFPRLRIIWSSSPFATSEIFNDLKLNNPEPDPTKAIAMGTDDDPEAGAGVNGAA 923
Query: 292 EDFISKLPGMA 302
E+ + LPG++
Sbjct: 924 EEVLRCLPGIS 934
>gi|226287645|gb|EEH43158.1| DNA repair protein rad16 [Paracoccidioides brasiliensis Pb18]
Length = 951
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 162/287 (56%), Gaps = 35/287 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + + +V+VFF+ Y SVEEQ YLS +RREK A
Sbjct: 588 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTNREVRVFFLYYSGSVEEQRYLSAVRREKDA 647
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E GR V+VD+REFRS
Sbjct: 648 FTKLIKEKGSMALTITHDKSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 707
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY Q + M +HY
Sbjct: 708 ALPSLLHGRSMVVVPCQLTVGDYILTPDICVERKSIRDLQSSLKNGRLYNQAETMLQHYK 767
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P+LLIEFD NK F + N P + L KS I
Sbjct: 768 NPVLLIEFDQNKSFTFDAFTSAT-------------NTPGSESFSTNLINPTNPKS--IQ 812
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L LLTL F +L++IWSS PY TA++F ELK+ EP A +G
Sbjct: 813 LLLTLLTLSFQRLKIIWSSSPYQTAEIFAELKKNNPEPDPIRAVQMG 859
>gi|390595928|gb|EIN05331.1| hypothetical protein PUNSTDRAFT_54777 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1029
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 187/360 (51%), Gaps = 66/360 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ + + +R+VEVY+ + + V+V+FM Y S EE +L+ RREK+A
Sbjct: 674 LAEIQPRFIVMFEPNQDFVRRVEVYRSSHPGLAVRVYFMVYQLSCEEHRFLAAQRREKEA 733
Query: 70 FEYLIQEKTNMAVPT-------------------------EQDGVSTEPEESCGRVIVDM 104
FE LI+E+ +M +P +Q V++EP RVIVDM
Sbjct: 734 FESLIKERGSMLLPIFEERRAATGTTEGLIKTISTRAAGGQQRQVNSEPS----RVIVDM 789
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REFRS LP LLH + + P T++VGDYIL+PD+CVERKS+ DL+ S SGRLYTQ + M
Sbjct: 790 REFRSTLPSLLHAANILVVPATLTVGDYILTPDMCVERKSLPDLVQSFTSGRLYTQCELM 849
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
HY +P+LLIEF+ +K F L+ + + KP G Y R
Sbjct: 850 SVHYKQPILLIEFEEHKSFSLETVTEMK-----------SYAKP---TGKYPPKRKPGPG 895
Query: 225 S-------SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
+ I AKL LL L FP++R+IWSS PY TA +F +LK EP A ++G
Sbjct: 896 PDQDQPGVTSIQAKLVLLALSFPRVRIIWSSSPYATADIFKDLKLNSAEPDPVKAITVGA 955
Query: 278 TPNEDYTDRYNAAIEDFISKLPG---------MAEWSRARTLN-------LEVLGLNPGQ 321
+ D N A E+ + LPG M++ + R L E+LG+ PG+
Sbjct: 956 EEDPDAGAGVNQAAEELLRCLPGITAKNVKYVMSKVASVRQLCELPLAKVQEILGVEPGK 1015
>gi|238883892|gb|EEQ47530.1| hypothetical protein CAWG_06110 [Candida albicans WO-1]
Length = 970
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 174/321 (54%), Gaps = 42/321 (13%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L+ L P+ +I Y ++ IR+VEVYQ E +FM YG+SVEEQ YL ++RE
Sbjct: 619 ASILQELHPSHIIMYEQNLPFIRRVEVYQAINYENPAHAYFMYYGDSVEEQKYLLRVKRE 678
Query: 67 KKAFEYLIQEKT-------------------NMAVPTEQDGVS---TEPEESCGRVIVDM 104
K+AF LI+EK N V T G S TE +ES VIVD
Sbjct: 679 KEAFTKLIKEKATLGKHFETKDDNAKFQINRNNIVNTRIAGGSKFKTETDES--NVIVDA 736
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REF S P LL++ G+ + P +++GDYILSP +CVERKSISDL+ S SGRL+ Q +QM
Sbjct: 737 REFGSSTPNLLYRIGINVIPCMLTIGDYILSPKMCVERKSISDLVQSFSSGRLFQQCKQM 796
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
RHY P+LLIEFD + F LQ +A + ++P E S +
Sbjct: 797 FRHYELPVLLIEFDGTQSFSLQP-------FSAVKYVGSTRDEPVE-------SEIELNE 842
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
S+I +K+ L FPKL++IWSS PY TAQ+F ELK ++EP A G +
Sbjct: 843 QSNIQSKILSLLYAFPKLKIIWSSSPYETAQIFLELKANQEEPDVGTALDKGANRTIETG 902
Query: 285 D----RYNAAIEDFISKLPGM 301
D YN DFI +PG+
Sbjct: 903 DGNPPMYNDDAIDFIQNIPGI 923
>gi|68477617|ref|XP_717121.1| hypothetical protein CaO19.5318 [Candida albicans SC5314]
gi|68477780|ref|XP_717042.1| hypothetical protein CaO19.12778 [Candida albicans SC5314]
gi|46438739|gb|EAK98065.1| hypothetical protein CaO19.12778 [Candida albicans SC5314]
gi|46438821|gb|EAK98146.1| hypothetical protein CaO19.5318 [Candida albicans SC5314]
Length = 591
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 174/321 (54%), Gaps = 42/321 (13%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
+S L+ L P+ +I Y ++ IR+VEVYQ E +FM YG+SVEEQ YL ++RE
Sbjct: 240 ASILQELHPSHIIMYEQNLPFIRRVEVYQAINYENPAHAYFMYYGDSVEEQKYLLRVKRE 299
Query: 67 KKAFEYLIQEKT-------------------NMAVPTEQDGVS---TEPEESCGRVIVDM 104
K+AF LI+EK N V T G S TE +ES VIVD
Sbjct: 300 KEAFTKLIKEKATLGKHFETKDDNAKFQINRNNIVNTRIAGGSKFKTETDES--NVIVDA 357
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REF S P LL++ G+ + P +++GDYILSP +CVERKSISDL+ S SGRL+ Q +QM
Sbjct: 358 REFGSSTPNLLYRIGINVIPCMLTIGDYILSPKMCVERKSISDLVQSFSSGRLFQQCKQM 417
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
RHY P+LLIEFD + F LQ +A + ++P E S +
Sbjct: 418 FRHYELPVLLIEFDGTQSFSLQP-------FSAVKYVRSTRDEPVE-------SEIELNE 463
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
S+I +K+ L FPKL++IWSS PY TAQ+F ELK ++EP A G +
Sbjct: 464 QSNIQSKILSLLYAFPKLKIIWSSSPYETAQIFLELKANQEEPDVGTALDKGANRTIETG 523
Query: 285 D----RYNAAIEDFISKLPGM 301
D YN DFI +PG+
Sbjct: 524 DGNPPMYNDDAIDFIQNIPGI 544
>gi|303278230|ref|XP_003058408.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459568|gb|EEH56863.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1140
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 179/343 (52%), Gaps = 72/343 (20%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
+KP+ VI Y+ D A +R++E + + ++++F+ + S+EEQ Y+S LR E AF+
Sbjct: 779 VKPSFVILYDPDAAFVREIETFTARRPGAPLRIYFLVHEGSLEEQRYVSQLRYETNAFDS 838
Query: 73 LIQEKTNMAVPTEQDG---------------------------VSTEPEESCGR------ 99
L++ K +M++P EQ+G E+S R
Sbjct: 839 LVRAKQHMSMPAEQEGRIGGGTGDATAAEPVLPLPQLQPLLDPTKDAAEKSTRRAGGQLT 898
Query: 100 ------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
V+VDMREF S LP +LH+ G + P T+ VGDY+LSP++CVERKS+ DLIGSL
Sbjct: 899 VPTRLHVVVDMREFMSSLPSVLHQSGFKVMPATLEVGDYVLSPNMCVERKSLPDLIGSLN 958
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
+GRLY Q + MC+HY P+LLIEF+ + K F +
Sbjct: 959 NGRLYHQAEAMCKHYRYPILLIEFEGD--------------------------KAFGISS 992
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
L R+I +S + +KL LL FPKLRL+WS + TA++F + K EP+ EVA+
Sbjct: 993 VQDLGREIDPRS--VQSKLVLLIYAFPKLRLMWSRSMHMTAKMFADYKLAEPEPTVEVAA 1050
Query: 274 SIGQTPN-----EDYTDRYNAAIEDFISKLPGMAEWSRARTLN 311
+G P+ + YN A DF+ KLPG+ + + R L+
Sbjct: 1051 KVGLPPDLSADGAGVDEPYNQAGIDFLRKLPGITDKNLRRVLD 1093
>gi|336264469|ref|XP_003347011.1| MEI9 protein [Sordaria macrospora k-hell]
gi|380093137|emb|CCC09375.1| putative MEI9 protein [Sordaria macrospora k-hell]
Length = 940
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 173/328 (52%), Gaps = 80/328 (24%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 605 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 664
Query: 70 FEYLIQEKTNMAV--PTEQDGVSTEPEES---------CG-------------RVIVDMR 105
F LI+E+ +M++ T+ GV +PE + G RV+VD+R
Sbjct: 665 FTKLIKERASMSIVMTTDSSGVEDDPESAFLRTINTRIAGGGKLTTKATAQPPRVVVDVR 724
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY Q + M
Sbjct: 725 EFRSSLPSLLHARSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMF 784
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
+HY P+LLIEFD NK F L+
Sbjct: 785 QHYRNPMLLIEFDQ--------------------------NKSFTLE------------- 805
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS--AEVASSI--GQTPNE 281
L+ FPKLR+IWSS PY TA++F LK +EP A V + + G++P +
Sbjct: 806 -----PFADLSGTFPKLRIIWSSSPYETAEIFERLKTLEEEPDPIAAVRAGLGEGESPED 860
Query: 282 DYTD--------RYNAAIEDFISKLPGM 301
+ +N ++ + K+PG+
Sbjct: 861 GVNEGKGSVNGGAFNMEAQEMLGKVPGV 888
>gi|297121|emb|CAA50599.1| rad16 [Schizosaccharomyces pombe]
Length = 892
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 171/326 (52%), Gaps = 64/326 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +L+P VI +++D IR+VEVY+ + ++V+FM YG S+EEQ YL +RREK +
Sbjct: 542 LNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQKYLFSVRREKDS 601
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES--------------------------------- 96
F LI+E++NMA+ D E +ES
Sbjct: 602 FSRLIKERSNMAIVLTADSERFESQESKFLRNVNTRIAGGGQLSITNEKPRVRSLYLMFI 661
Query: 97 ---CGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
+VIVD+REFRS LP +LH + P + VGDYILSP ICVERKSI DLI SL
Sbjct: 662 CIKTLKVIVDLREFRSSLPSILHGNNFSVIPCQLLVGDYILSPKICVERKSIRDLIQSLS 721
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
+GRLY+Q + M +Y P+LLIEF+ ++ F + PF
Sbjct: 722 NGRLYSQCEAMTEYYEIPVLLIEFEQHQSFT---------------------SPPFS--- 757
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
LS +I +D+ +KL LLTL FP LR++WSS Y T+ +F +LK EP A+
Sbjct: 758 --DLSSEIG--KNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAA 813
Query: 274 SIGQTPNEDYTDRYNAAIEDFISKLP 299
SIG +D T+ YN A D + LP
Sbjct: 814 SIGLEAGQDSTNTYNQAPLDLLMGLP 839
>gi|388581753|gb|EIM22060.1| hypothetical protein WALSEDRAFT_51071 [Wallemia sebi CBS 633.66]
Length = 965
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 209/411 (50%), Gaps = 86/411 (20%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
D + L ++P +I Y+ + A +R+VE+Y+ + ++ ++++F+ Y SVEEQ YLS LR
Sbjct: 613 DDDTLLNEIRPKYIIMYDPNAAFVRRVELYKSSNPQIDIRMYFLMYNASVEEQTYLSGLR 672
Query: 65 REKKAFEYLIQEKTNMAVP---TEQDGVSTE----------------PEESCGRVIVDMR 105
+EK AFE LI+EK+ M +P E T+ ++ ++IVD R
Sbjct: 673 KEKDAFERLIREKSTMLMPLLEKESSRAGTDHYLSALSARVAGGQVITGDTKPKIIVDNR 732
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP +L++ + PVT++VGDY+L P +CVERKS++DL S QSGRL+TQ + M
Sbjct: 733 EFRSSLPGILYRSKFEVIPVTLTVGDYVLDPTMCVERKSLTDLNQSFQSGRLFTQCEYMS 792
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
+Y P+LLIEF+ NK F L+ + + K + + KP + G + +
Sbjct: 793 TYYKTPILLIEFEENKSFTLE-----TISESKKVIPHMNTKKP-SITG--------TSPT 838
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
++L +LT+ FP+LR++WSS P TA++F +LK R+EP + A SIGQ
Sbjct: 839 EIFQSRLVMLTISFPRLRILWSSSPRQTAEMFADLKYQREEPDRDKAVSIGQD------- 891
Query: 286 RYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPA 345
+D I + WS T+ EVL PG
Sbjct: 892 --EVGQQDLIEE-----NWS---TVPSEVLRCMPG------------------------- 916
Query: 346 PGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALY 396
VT KN + N+ S+ L +L+ +EL ++ GNAL+
Sbjct: 917 ----------VTGKNYHYISNKVKSIRHLVELTNKELRDIM-GVDQGNALF 956
>gi|255079504|ref|XP_002503332.1| predicted protein [Micromonas sp. RCC299]
gi|226518598|gb|ACO64590.1| predicted protein [Micromonas sp. RCC299]
Length = 965
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 178/329 (54%), Gaps = 51/329 (15%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
D ++ L +++P+ +I ++ D A IR++EV+ + +++V+FM + SVEEQ YLS +
Sbjct: 618 DRAAVLATVRPSFIIVHDPDAAFIREIEVHAAHRPGARMRVYFMVHDTSVEEQRYLSQIN 677
Query: 65 REKKAFEYLIQEKTNMAVPTEQDG--VSTEPEESCG-------------------RVIVD 103
E +F LI+ K + A+P EQ+G + P G V+VD
Sbjct: 678 YESDSFANLIRGKAHAAMPFEQEGRVYNETPLAIAGTSGANTRIRGGQLSNPTKLHVVVD 737
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
REF S LP +LH+ G + P T+ VGDY+LSP +CVERKS+ DLI SL++ RL TQ+Q
Sbjct: 738 TREFMSSLPSVLHQSGFKVMPCTLEVGDYVLSPSMCVERKSLPDLIESLRNSRLVTQMQN 797
Query: 164 MCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA 223
MCRHY P+LLIEF+ +K F +Q + RD+ NY ++
Sbjct: 798 MCRHYKIPILLIEFERDKAFGIQNPADVPRDL------------------NYNTTQ---- 835
Query: 224 KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY 283
+L LL FPK+R++WS + TA++F + K +EP+ EVA+ +G D
Sbjct: 836 ------GRLALLIWRFPKMRVMWSRSLHMTARMFADWKYAEEEPTVEVAAKVGVPQGADA 889
Query: 284 TDR--YNAAIEDFISKLPGMAEWSRARTL 310
+R N D + +LPG+ + + R L
Sbjct: 890 GERNSVNQPAIDMLRRLPGVTDSNYRRVL 918
>gi|320583994|gb|EFW98206.1| DNA repair like-protein Rad1 [Ogataea parapolymorpha DL-1]
Length = 997
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 172/315 (54%), Gaps = 46/315 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + P+ +I Y ++A IR+VE++Q + + +FM YG+S+EEQ YL+ ++REK A
Sbjct: 662 LEEVMPSYIILYEPNLAFIRRVELFQSLRHTNPARCYFMYYGDSIEEQGYLNSIKREKDA 721
Query: 70 FEYLIQEKTNM--AVPTEQDG--------------VSTEPEESCGRVIVDMREFRSELPV 113
F LI+EK+ + T++D P ++ +V+VD+REFRS+LP
Sbjct: 722 FTRLIREKSMLPKTFITDEDESARFLPTVAQSTRIAGGNPLDTKNKVVVDVREFRSQLPF 781
Query: 114 LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLL 173
L + + + P ++VGDY+LSP IC+ERKSI DL+ SL+SGRLY Q +QM R+Y P L
Sbjct: 782 LCYLAAMEVIPCMLTVGDYVLSPKICIERKSIPDLVSSLKSGRLYQQCEQMFRYYELPAL 841
Query: 174 LIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA------AKSSD 227
LIEF+ K F L+ PF Y R + A D
Sbjct: 842 LIEFEEGKSFSLE---------------------PF---TGYRDGRPLGTGPGSTAFQQD 877
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
+ KL +L + FP L+++W+S P+ TA+LF ELK +DEP + A + G P D +
Sbjct: 878 LQLKLMMLLIAFPSLKILWTSSPFETARLFRELKLNQDEPDVDKAINAGLNPLFDKDTYF 937
Query: 288 NAAIEDFISKLPGMA 302
N D I +PG++
Sbjct: 938 NDMAIDLIQNIPGIS 952
>gi|66809791|ref|XP_638619.1| DNA excision repair protein 4 [Dictyostelium discoideum AX4]
gi|74854253|sp|Q54PN5.1|XPF_DICDI RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA
excision repair protein ERCC-4
gi|60467224|gb|EAL65258.1| DNA excision repair protein 4 [Dictyostelium discoideum AX4]
Length = 964
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 173/329 (52%), Gaps = 65/329 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++PT +I Y+ D++ RQ+EVY+ V+++FM Y +S EE Y+S L+REK +
Sbjct: 615 LDEIRPTFIIVYDPDISITRQIEVYKAENPGTPVRLYFMTYSDSSEEYQYISKLQREKSS 674
Query: 70 FEYLIQEKTNMAVPTEQDGV----------------STEPEESCG--------------- 98
FE LI+EKTN+ + TEQ+G ST G
Sbjct: 675 FEKLIREKTNLIIDTEQEGKIQLVDNSKLELLDDMKSTRNSRLGGLMKNFDSIQQQQQQQ 734
Query: 99 ----RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+I+D EF+S LPV+LH G I P+ + VGD++LSP C+ERKS+SDLIGS S
Sbjct: 735 QQKKTIIIDSHEFKSSLPVVLHNNGYEIIPLRLEVGDFVLSPIHCIERKSVSDLIGSFNS 794
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRL+TQ++ M R Y P+LLIEFD N+PF L P ELQ +
Sbjct: 795 GRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVA--------------------PDELQKD 834
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
Y + +KL LT FP+LR+IWS Y T +++ ++K G EP + +
Sbjct: 835 Y-------LSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPDPSMVNV 887
Query: 275 IGQTPNEDYTDRYNAAIEDFISKLPGMAE 303
I + N+D +NA +D + +PG+ +
Sbjct: 888 IPEV-NDDQNYNFNA--QDVLRTMPGVND 913
>gi|443918350|gb|ELU38846.1| DNA repair protein RAD1, putative [Rhizoctonia solani AG-1 IA]
Length = 954
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 179/362 (49%), Gaps = 66/362 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ ++ IR+VEVY+ A + V+V+FM Y ++VEE +L+ RREK A
Sbjct: 620 LSEIRPRYIVMMEPNLDFIRRVEVYRSASPGLAVRVYFMTYSKTVEEHKFLAGQRREKDA 679
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESC--------------------GRVIVDMREFRS 109
FE LI+EK +M + E +P +S RV+VDMREFRS
Sbjct: 680 FEALIKEKGSMVLTIEDPRRGYDPNDSVIRTISSRIAGGGLREINNEPPRVVVDMREFRS 739
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP +LH + + P T++VGDYIL+PDI VERKS+ DL+ + +Y
Sbjct: 740 TLPSILHLSQIQVVPATLTVGDYILTPDIVVERKSVPDLVST---------------YYK 784
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
+P+LLIEF+ NK F LQ + I+A+ N P DI
Sbjct: 785 QPVLLIEFEENKSFTLQA--FQDTRISARKKDRAGPNTP-------------EIDDWDIQ 829
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNA 289
+KL LLTL FPKLR+IWSS PY TA +F E K+ EP +VA +IG E+ N
Sbjct: 830 SKLVLLTLAFPKLRIIWSSSPYATADIFTEFKKNNKEPDPQVAVTIGANEGEEENAAVNQ 889
Query: 290 AIEDFISKLPGMAEWSRARTLNL----------------EVLGLNPGQGGNFLTELFRAS 333
ED + LPG+ + + +N E++G PG+ + R
Sbjct: 890 LAEDMLRALPGVTQKNYRSIMNRVGSLREFCKLSLRQMQEIMGDEPGKACHTFIHTTRGE 949
Query: 334 SF 335
++
Sbjct: 950 TY 951
>gi|402219704|gb|EJT99777.1| hypothetical protein DACRYDRAFT_96032 [Dacryopinax sp. DJM-731 SS1]
Length = 1001
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 166/313 (53%), Gaps = 34/313 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P +I Y D A IR+VEVY+ + + V+V+FM Y + E+ YL+ RREK A
Sbjct: 652 LAELQPRWIIMYEPDQAFIRRVEVYRSSHPGLAVRVYFMVYEMTSEDYMYLASQRREKDA 711
Query: 70 FEYLIQEKTNMAVPT-EQ-------DGVSTEPEESCG----------RVIVDMREFRSEL 111
F LI+E+ M P EQ D + T G R+IVDMREFRS L
Sbjct: 712 FAKLIEERATMLNPILEQPTRAGTNDLIKTISSRIAGGGNVVNSEPTRIIVDMREFRSSL 771
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LLH + I P T++VGDY+L+PD+ VERKS+ DL+ S SGRLYTQ + M HY +P
Sbjct: 772 PSLLHATNIQIVPATLTVGDYVLTPDMVVERKSVPDLVQSFNSGRLYTQCELMSVHYKQP 831
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIEF+ +K F LQ +R A N+P E S I AK
Sbjct: 832 ILLIEFEQDKSFSLQ-TISETRSQAKT----TKPNQPAEFN---------TPDMSSIQAK 877
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG--QTPNEDYTDRYNA 289
L LLTL F +L +IWSS P+ TA++F +LK EP A IG + +N
Sbjct: 878 LVLLTLAFHRLGIIWSSSPFATAKIFADLKMNHPEPDPSRAIQIGAEEGGGSMAEGGWNN 937
Query: 290 AIEDFISKLPGMA 302
ED + PG+
Sbjct: 938 QAEDLVRCFPGIT 950
>gi|317150241|ref|XP_001823894.2| DNA repair protein RAD1 [Aspergillus oryzae RIB40]
Length = 955
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 153/269 (56%), Gaps = 6/269 (2%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK +
Sbjct: 602 LEEVRPRYIIMYEPDSAFIRRVEVYRSSHVGRNVRVYFMYYGGSVEEQRYLSAVRREKDS 661
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISV 129
F LI+EK NMAV D +P+E R + L + ++ ++V
Sbjct: 662 FTKLIKEKGNMAVTLTHDKGFEDPQEQFLRTVNTRIAGGGRLAATASPPRVVVD---LTV 718
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDYIL+PDICVERKSI DLI SL++GRLY Q + M +HY PLLLIEFD NK F +
Sbjct: 719 GDYILTPDICVERKSIRDLITSLRNGRLYNQAETMLQHYKNPLLLIEFDQNKSFTFDA-F 777
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK--LQLLTLHFPKLRLIWS 247
+ FL ++ + S + SS +A+ L LLTL FP+L++IWS
Sbjct: 778 ASATTPGTTFLTDYGFSSSGTATTTLSASSSLVNPSSPKSAQHLLVLLTLAFPRLKVIWS 837
Query: 248 SGPYNTAQLFFELKQGRDEPSAEVASSIG 276
S PY TA++F ELK+ EP A IG
Sbjct: 838 SSPYQTAEIFAELKKNNPEPDPIRAVQIG 866
>gi|367000079|ref|XP_003684775.1| hypothetical protein TPHA_0C01850 [Tetrapisispora phaffii CBS 4417]
gi|357523072|emb|CCE62341.1| hypothetical protein TPHA_0C01850 [Tetrapisispora phaffii CBS 4417]
Length = 1055
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 163/304 (53%), Gaps = 56/304 (18%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S+L+ + P+ +I Y D+ IR+VEVY+ +E+ +FFM YG+S+EEQ YL+ +++EK
Sbjct: 682 SQLQEIMPSYIIMYEPDLTFIRRVEVYKAINAELSPNIFFMYYGDSIEEQRYLTQIKKEK 741
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGR---------------------------- 99
AF LI+E +A E D + + R
Sbjct: 742 DAFTKLIRENAKLAQSFEADLDLSHLKNLADRKLKMNRLINRNTRIAGGQGNAQVFTQDV 801
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD REF + LP LL + G+++ P ++VGDYIL+PDICVERKSISDLIGSLQ+ RL +
Sbjct: 802 VVVDSREFNASLPGLLFRYGVHVIPCMLTVGDYILTPDICVERKSISDLIGSLQNNRLRS 861
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYY--- 216
Q ++M R+Y P LLIEFD + F L+ PF + +Y
Sbjct: 862 QCKKMSRYYKFPTLLIEFDEGQSFSLE---------------------PFSEKRSYRSKE 900
Query: 217 --LSRDIAAKSS--DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
DI++K S +I KL L + FP L+ IWSS P T + ELK R++P VA
Sbjct: 901 MSTVHDISSKLSQDEIQMKLAKLVIEFPGLKFIWSSSPLQTVNIILELKLNREQPDPNVA 960
Query: 273 SSIG 276
S+G
Sbjct: 961 ISLG 964
>gi|254569814|ref|XP_002492017.1| Single-stranded DNA endonuclease (with Rad10p) [Komagataella
pastoris GS115]
gi|238031814|emb|CAY69737.1| Single-stranded DNA endonuclease (with Rad10p) [Komagataella
pastoris GS115]
gi|328351490|emb|CCA37889.1| DNA excision repair protein ERCC-4 [Komagataella pastoris CBS 7435]
Length = 960
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 169/320 (52%), Gaps = 40/320 (12%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L L P+ +I Y +++ IR++EVY+ + + + FFM Y +SVEE+ YL+ ++REK
Sbjct: 601 SLLDELNPSHIILYEPNLSFIRRIEVYEAIRKQRAAQTFFMYYKDSVEEETYLNSIKREK 660
Query: 68 KAFEYLIQEKTNMA--VPTEQD-------------------GVSTEPEESCGRVIVDMRE 106
+AF LI+EK +A T++D T +ES +IVD+RE
Sbjct: 661 EAFTKLIREKATLASHYSTDEDNQFRVTKSQVFNTRIAGGSAFRTPTDESS--IIVDVRE 718
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
FRS LP L ++ GL + P +++GDYI+SP ICVERKSI DLIGS SGRLY Q +QM R
Sbjct: 719 FRSSLPNLCYRIGLKVVPAMLTIGDYIISPRICVERKSIPDLIGSFNSGRLYQQCEQMFR 778
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
HY P LLIEF K F L+ L +P + S +
Sbjct: 779 HYQLPALLIEFQEGKSFSLEPFAEL-------------RTRPNQTSQQMTPS-TVKFFQQ 824
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG---QTPNEDY 283
DI AKL L + +PKL++ WSS P +AQ+ LK EP E A G N
Sbjct: 825 DIQAKLITLLIAYPKLKIFWSSSPTQSAQILISLKATEREPDLEKAIQAGVDANMMNSSG 884
Query: 284 TDRYNAAIEDFISKLPGMAE 303
+N A D ++++PG+ +
Sbjct: 885 APEFNDAAIDVLTQIPGVTK 904
>gi|255725584|ref|XP_002547721.1| hypothetical protein CTRG_02028 [Candida tropicalis MYA-3404]
gi|240135612|gb|EER35166.1| hypothetical protein CTRG_02028 [Candida tropicalis MYA-3404]
Length = 976
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 176/327 (53%), Gaps = 51/327 (15%)
Query: 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
++ ++ L P+ +I Y D+ +R+VE+YQ E +V+ M Y +SVEEQ +L +++E
Sbjct: 623 TATIQELHPSHIIMYEHDLTFLRRVEMYQAINREHPAEVYLMYYRDSVEEQKHLLRIKKE 682
Query: 67 KKAFEYLIQEKTNMAVP----TEQD------------------GVSTEPEESCGRVIVDM 104
K AF LI+EK A+P TE D G E +VIVD
Sbjct: 683 KDAFSKLIKEKA--ALPKRFDTEADNAKFKIRKPDVVNTRIAGGAKFRTEADEMQVIVDS 740
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REF+S P ++ G+ + P I+VGDYILSP CVERKSISDLI S ++GRL++Q +QM
Sbjct: 741 REFKSSTPFSIYLTGMTVIPSMITVGDYILSPTTCVERKSISDLIESFKNGRLFSQCKQM 800
Query: 165 CRHYAKPLLLIEFDHNKPFELQ--GNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
RHY P+LLIEF +N+ F LQ Y +R + E D++
Sbjct: 801 FRHYRNPILLIEFSNNESFSLQSFSTYRFTRGVKE----EVDNDNAVS-----------D 845
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
K + + L FPKL++IWSS P TAQ+F ELK ++EP+ VA ++ + N+
Sbjct: 846 KKQVPVQENIMKLLYQFPKLQIIWSSSPQETAQIFLELKSNQEEPN--VAEALDKGVNKA 903
Query: 283 YTD-------RYNAAIEDFISKLPGMA 302
T Y+AAI DFI +PG+
Sbjct: 904 ITTGDGSPAMYYDAAI-DFIMNIPGIT 929
>gi|384253847|gb|EIE27321.1| hypothetical protein COCSUDRAFT_34768 [Coccomyxa subellipsoidea
C-169]
Length = 851
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 172/337 (51%), Gaps = 71/337 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P+ V+ ++DVA +RQ+EVY + + ++V+ ++Y +S E+ Y++ L+RE++
Sbjct: 494 LWDVQPSFVVMVDSDVAFVRQLEVYAAGRGKAPLRVYNLRYKDSFEQDRYMAALQREQRV 553
Query: 70 FEYLIQEKTNMAVP------------------------------------TEQDGVSTEP 93
FE LI K +M +P T + G+
Sbjct: 554 FEDLIHSKGHMVLPELGQDLALLRAEPREGVLQPGVEEAIPGMVPAANAITRRGGMMQPK 613
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
+++VD+REF S LP +LH++ + + PVT+ VGDY+LSP++CVERKS+SDL S
Sbjct: 614 SRQPRKLVVDVREFMSSLPSVLHQQHMEVIPVTLEVGDYVLSPEMCVERKSLSDLRQSFL 673
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
SGRL+ Q + M +HY P+LLIEF+ +K F L + DI
Sbjct: 674 SGRLFHQAESMSKHYKTPILLIEFERDKAFALHATSEIGSDI------------------ 715
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
S+ + +KL LL+LHFP+LR+IWS + TA LF LK +DEP A VA+
Sbjct: 716 ----------NSNTLGSKLVLLSLHFPRLRIIWSRSLHATADLFRSLKANQDEPDAAVAA 765
Query: 274 SIGQTPNED-------YTDRYNAAIEDFISKLPGMAE 303
+G D N A D + +LPG+ E
Sbjct: 766 LVGVPVGADGLPAGGGSESVVNTAAIDVLRRLPGVTE 802
>gi|150865875|ref|XP_001385266.2| hypothetical protein PICST_60166 [Scheffersomyces stipitis CBS
6054]
gi|149387131|gb|ABN67237.2| DNA repair protein [Scheffersomyces stipitis CBS 6054]
Length = 564
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 177/339 (52%), Gaps = 57/339 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I Y +++ IR+ E++Q + KVF M Y S EEQ YL L++EK A
Sbjct: 221 LQEISPSYIIMYEPNLSFIRRTEIFQAINRDQPAKVFVMFYSNSTEEQKYLLRLKKEKDA 280
Query: 70 FEYLIQEKT-------------------NMAVPTEQDGVSTEPEESCGRVIVDMREFRSE 110
F LI+EK N + T G ++ R++VD REF +
Sbjct: 281 FTKLIREKASLSKHFETSEDNYKFQIQRNQTMNTRIAGGASFRTTDEMRIVVDSREFGAS 340
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
LP LL++ G+ + P ++VGDY++SP ICVERK+I DL+ S +SGRL+TQ QM +HY
Sbjct: 341 LPNLLYRIGIKVVPCMLTVGDYVISPKICVERKAIPDLVSSFKSGRLFTQCSQMFKHYET 400
Query: 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITA 230
P LLIEFD NK F LQ Y SR + + E ++ P + + +
Sbjct: 401 PTLLIEFDENKSFSLQ-QYADSRFLKGR--AETANDSPI---------------NQSLQS 442
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP----------SAEVASSIGQTPN 280
K+ L + +PKL++IWSS PY TAQ+F LK ++EP S EV + G PN
Sbjct: 443 KIMELLVAYPKLKIIWSSSPYETAQIFMSLKANQEEPDVESALNKGVSKEVITEDGGPPN 502
Query: 281 EDYTDRYNAAIEDFISKLPGMAEWSRARTL----NLEVL 315
+N DFI +PG+ + + + + NLE L
Sbjct: 503 ------FNDDPIDFIQNIPGINDMNYYKIIQNVRNLEEL 535
>gi|391337063|ref|XP_003742893.1| PREDICTED: DNA repair endonuclease XPF-like [Metaseiulus
occidentalis]
Length = 819
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 34/292 (11%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
+P SV+ ++ ++ +R +E+Y ++ V V+ + Y +SV+EQ Y + +R+EK+AF L
Sbjct: 503 RPLSVVLFDLHLSTVRTLEIYHNLSTQSGVTVYTITYAKSVDEQRYYTSVRKEKEAFANL 562
Query: 74 IQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYI 133
IQEK MA T+ D RVIVD+REFRS+LP L+++RG+ + P T+ VGDYI
Sbjct: 563 IQEKAAMASKTDWDE-EINVARGENRVIVDVREFRSDLPALVYRRGIDLCPGTLEVGDYI 621
Query: 134 LSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSR 193
L+P ICVERK++ DLI SL SGRLY Q ++M HY P++LIEF + F +
Sbjct: 622 LTPTICVERKALQDLIDSLCSGRLYRQSERMSLHYEVPVVLIEFSSLEAFSFKNK----- 676
Query: 194 DIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNT 253
L +I +K + +L +LTL FPKLRL+WS P+ T
Sbjct: 677 -----------------------LQSEIISKKT--VQRLIMLTLTFPKLRLLWSPSPHAT 711
Query: 254 AQLFFELKQGRDEPSAEVASSIGQTP---NEDYTDRYNAAIEDFISKLPGMA 302
A+LF LK+ R +P+ A + ++ ++ +R+N F+ LPG+
Sbjct: 712 AELFELLKKDRPQPTLVEALKVTESEIKRDDGLLERFNTRTTRFLETLPGVG 763
>gi|406607589|emb|CCH41060.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 994
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 174/314 (55%), Gaps = 36/314 (11%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L P+ +I Y D++ IR+VEV+Q + + +FM Y +SVEEQ +L+ +++EK+A
Sbjct: 649 LQELMPSFIIMYEPDLSFIRRVEVHQANFKDDPARTYFMYYNDSVEEQRHLTAIKKEKEA 708
Query: 70 FEYLIQEKTNMA--VPTEQD------------------GVSTEPEESCGRVIVDMREFRS 109
F LI+EK+++A TE+D G + RV+VD REFR+
Sbjct: 709 FTKLIREKSSLASHFETEEDFSKFSIRKSQVMNTRIAGGANFRNPSDESRVLVDHREFRA 768
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LL++ GL + P ++VGDYI++P +C+ERKSI DLIGS +SGRLY Q ++M ++Y
Sbjct: 769 PLPGLLYRIGLRVVPCMLTVGDYIVTPKVCIERKSIPDLIGSFKSGRLYEQCERMSKYYE 828
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P LLIEFD+N+ F L+ + +R +P +Q + S +I
Sbjct: 829 LPALLIEFDNNQSFSLEP-FSETR------------IRPNSVQAPHPTSS--GRMQDEIQ 873
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDY-TDRYN 288
L L L FPK++++WSS PY T +L ELK R+EP A G ++ D
Sbjct: 874 MNLAALVLKFPKMKILWSSSPYQTTELIMELKASREEPDIVKAVEAGTKEDKQRNNDSTK 933
Query: 289 AAIEDFISKLPGMA 302
+ I + +PG+
Sbjct: 934 SNIITLLQNIPGIT 947
>gi|194219216|ref|XP_001490470.2| PREDICTED: DNA repair endonuclease XPF isoform 2 [Equus caballus]
Length = 1008
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 133/203 (65%), Gaps = 29/203 (14%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+IVDMREFRSELP LLH+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL SGRLY+
Sbjct: 776 IIVDMREFRSELPSLLHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNSGRLYS 835
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M R+Y +P+LLIEFD +KPF L L +I+
Sbjct: 836 QCIAMSRYYKRPVLLIEFDPSKPFSLTSRGALYHEIS----------------------- 872
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQT 278
S+DI++KL LLTLHFP+LR++W P+ +A+LF ELKQ + +P A A ++ +
Sbjct: 873 -----SNDISSKLTLLTLHFPRLRILWCPSPHVSAELFEELKQNKPQPDAATAMAVTADS 927
Query: 279 PNEDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 928 ETLPESEKYNPGPQDFLLKMPGV 950
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVST 91
EK+AFE LI+ N +G+ST
Sbjct: 626 EKEAFEKLIRCSLNQCRGVSVEGLST 651
>gi|429861882|gb|ELA36546.1| DNA repair protein [Colletotrichum gloeosporioides Nara gc5]
Length = 911
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 167/317 (52%), Gaps = 70/317 (22%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ V+V+F+ YGESVEEQ YLS +RREK A
Sbjct: 591 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHNDRNVRVYFLYYGESVEEQRYLSSVRREKDA 650
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEES---------CG-----------RVIVDMREFR 108
F LI+E+ +M++ D E P+E+ G RV+VD+REFR
Sbjct: 651 FTKLIKERASMSLVMTVDPHGVEDPQEAFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 710
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + I P ++VGDY+LSP+IC E M +HY
Sbjct: 711 SSLPSLLHGRSMIIVPCMLTVGDYVLSPNICAE---------------------TMFQHY 749
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLSRDIAAK--S 225
P+LLIEFD NK F L+ PF +L G+ IA S
Sbjct: 750 KNPMLLIEFDQNKSFTLE---------------------PFADLSGSL---NSIAPTNVS 785
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTD 285
SD+ +KL LLTL FPKLR+IWSS PY TA++F LK DEP A G + D
Sbjct: 786 SDLQSKLVLLTLAFPKLRIIWSSSPYQTAEIFESLKSQEDEPDPIAAVRAGLDKDMKAED 845
Query: 286 R-YNAAIEDFISKLPGM 301
+ +N ++ +S +PG+
Sbjct: 846 QSFNLEPQEMLSAVPGV 862
>gi|207340464|gb|EDZ68802.1| YPL022Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1100
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|412991258|emb|CCO16103.1| predicted protein [Bathycoccus prasinos]
Length = 1135
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 180/374 (48%), Gaps = 108/374 (28%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S+L P+ VI Y+ D A IR++EV+ ++ + K+ V+F+ + S EE+ YL+ ++RE
Sbjct: 683 SQLAIYAPSYVIVYDPDAAFIRELEVFAASRPQRKLTVYFLMHDNSTEEEKYLAAIKRET 742
Query: 68 KAFEYLIQEKTNMAVPTEQDG------------------VSTEP---------------- 93
AFE L K +MAVP EQ+G ST P
Sbjct: 743 AAFERLFMMKQHMAVPEEQEGRLYELGEEEEKEEKEERQTSTNPMQLALYKERQMKLKKP 802
Query: 94 --------------------EESCGRV---------IVDMREFRSELPVLLHKRGLYIEP 124
++ GRV +VD+REF S LP +LH+ G + P
Sbjct: 803 LFANDALDLKKKMEDDAVSTRKAGGRVMKRLTLLHVVVDIREFMSTLPAVLHQCGYTLLP 862
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
T+ VGDY+LSPDICVERK+I DL+ SL+SGRLYTQ + MC+HY +LLIEFD ++ F
Sbjct: 863 CTLEVGDYVLSPDICVERKAIPDLVQSLKSGRLYTQAEAMCKHYKTAILLIEFDKDRSFA 922
Query: 185 LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRL 244
LQ + I P LQ KL LL L FPKLR+
Sbjct: 923 LQPKGEIPAQI-----------NPDSLQ-----------------TKLTLLILKFPKLRI 954
Query: 245 IWSSGPYNTAQLFFELKQGRDEPSAEVASSIG------QTPNEDYTDR-----------Y 287
IWS TA++F LK+ DEP+ E A+ +G +T + + D+
Sbjct: 955 IWSPNQRFTARVFAGLKKVEDEPTIEKATRVGVPDDFAKTADGEDDDQNVDERGFNKNGI 1014
Query: 288 NAAIEDFISKLPGM 301
N A +F+ KLPG+
Sbjct: 1015 NQAAVNFLRKLPGV 1028
>gi|256270540|gb|EEU05724.1| Rad1p [Saccharomyces cerevisiae JAY291]
Length = 1100
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|151942770|gb|EDN61116.1| UV endonuclease [Saccharomyces cerevisiae YJM789]
Length = 1100
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|190407924|gb|EDV11189.1| UV endonuclease [Saccharomyces cerevisiae RM11-1a]
gi|323331265|gb|EGA72683.1| Rad1p [Saccharomyces cerevisiae AWRI796]
gi|365762472|gb|EHN04006.1| Rad1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1100
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|323335097|gb|EGA76387.1| Rad1p [Saccharomyces cerevisiae Vin13]
gi|323346244|gb|EGA80534.1| Rad1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 1100
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|6325235|ref|NP_015303.1| Rad1p [Saccharomyces cerevisiae S288c]
gi|131810|sp|P06777.1|RAD1_YEAST RecName: Full=DNA repair protein RAD1
gi|172325|gb|AAA34934.1| RAD1 protein [Saccharomyces cerevisiae]
gi|1039455|gb|AAB68165.1| Rad1p: UV endonuclease [Saccharomyces cerevisiae]
gi|285815514|tpg|DAA11406.1| TPA: Rad1p [Saccharomyces cerevisiae S288c]
Length = 1100
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|259150134|emb|CAY86937.1| Rad1p [Saccharomyces cerevisiae EC1118]
Length = 998
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|366991689|ref|XP_003675610.1| hypothetical protein NCAS_0C02540 [Naumovozyma castellii CBS 4309]
gi|342301475|emb|CCC69244.1| hypothetical protein NCAS_0C02540 [Naumovozyma castellii CBS 4309]
Length = 1093
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 162/297 (54%), Gaps = 42/297 (14%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S + P+ +I + D++ IR+VEVY+ E+ KV+FM YGESVEEQ++L+ +++EK
Sbjct: 699 STFEEIMPSYIIMFEPDLSVIRRVEVYRAIHRELAPKVYFMYYGESVEEQSHLTAIKKEK 758
Query: 68 KAFEYLIQEKTNMA--VPTEQD--------------------------GVSTEPEESCGR 99
AF LI+E N+A T +D G + E +
Sbjct: 759 DAFTKLIREHANLAQHFETTEDLSHFKNLAERKSKLNKLKRSGTRNAGGQAGLQEVTQDI 818
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
++VD REF + LP LL + G+ + P ++VGDYI++PDIC+ERKSISDLIGSLQ+ RL +
Sbjct: 819 IVVDTREFNAPLPGLLFRYGVRVLPCMLTVGDYIITPDICIERKSISDLIGSLQNNRLVS 878
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q ++M R+Y P LLIEFD + F L+ E H K E + +S
Sbjct: 879 QCKKMLRYYKYPTLLIEFDEGQSFSLEP------------FSEKRHFKNKESSTTHPISN 926
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ + +I KL L + FP L++IWSS P T + ELK GR++P VA G
Sbjct: 927 KLTQE--EIQNKLSKLVMKFPTLKIIWSSSPLQTVNILLELKLGREQPDPSVAIQYG 981
>gi|342319150|gb|EGU11100.1| Hypothetical Protein RTG_02900 [Rhodotorula glutinis ATCC 204091]
Length = 1060
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 175/335 (52%), Gaps = 75/335 (22%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L+P V+ ++ + + +R++E +SVEEQ YLS++RREK A
Sbjct: 740 LEELRPKYVVMFDPNPSFVRRIE-------------------DSVEEQKYLSEIRREKDA 780
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPE---------ESCGR--------VIVDMREFRSELP 112
F LI+EK +MA+P E + E E + GR VIVDMREFRS LP
Sbjct: 781 FVRLIEEKGSMAIPHEAEYRPGEDEGELMRTVNTRAGGRQVVITPPKVIVDMREFRSSLP 840
Query: 113 VLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPL 172
LLH + PVT+S+GDYI++P++ VERKSI DLI S SGRL+ Q + M HY +P+
Sbjct: 841 GLLHAGKFEVIPVTLSIGDYIITPEMAVERKSIPDLIQSFNSGRLFQQCELMTAHYKQPI 900
Query: 173 LLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT--A 230
LLIEFD K F L+ Y ++ A+ +DI +
Sbjct: 901 LLIEFDEKKSFNLE---------------------------TYVDTKTYASSPNDIDLRS 933
Query: 231 KLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG------QTPNEDYT 284
K+ LLT+ FPKLR+IWSS PY T ++F +LK+ R+EP A +G +T
Sbjct: 934 KIVLLTISFPKLRVIWSSSPYQTVEIFRDLKENREEPDQAKAQLVGLEDDNAETSGATGE 993
Query: 285 DRYNAAIEDFISKLPGMA----EWSRARTLNLEVL 315
+N A +D + LPG++ + ++ NLE L
Sbjct: 994 AGFNLAPQDILRSLPGVSSKNYRYLSSQVENLEAL 1028
>gi|392295988|gb|EIW07091.1| Rad1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1100
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E +++ E + + + R VI
Sbjct: 764 FTKLIRENASLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|349581792|dbj|GAA26949.1| K7_Rad1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1100
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E +++ E + + + R VI
Sbjct: 764 FTKLIRENASLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>gi|339256812|ref|XP_003370282.1| putative ERCC4 domain protein [Trichinella spiralis]
gi|316965578|gb|EFV50271.1| putative ERCC4 domain protein [Trichinella spiralis]
Length = 789
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 160/276 (57%), Gaps = 46/276 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQ---CAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66
L SL P +V+ YNAD+ +R +E+Y C++ E +++VFFM Y +S+EE+ YLS L+RE
Sbjct: 455 LLSLNPDNVVIYNADMWIVRHLELYNATACSR-EKQLRVFFMMYDKSMEERKYLSGLQRE 513
Query: 67 KKAFEYLIQEKTNMAVPTEQDGVST-----EPEESCGRVIVDMREFRSELPVLLHKRGLY 121
+ +FE L +E+ ++ +P T E ++ ++VDMREFRSELP LH RG+
Sbjct: 514 RTSFEQLFKEEVSLLIPKRTSLDQTRLNELEDQKVPSTIVVDMREFRSELPTQLHVRGVR 573
Query: 122 IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ PVT++VGDYI++PD+CVERKSI+DLI SL GRLY Q + M +Y K +LL++ +K
Sbjct: 574 LVPVTLTVGDYIITPDVCVERKSINDLISSLIHGRLYAQCRAMNNYYKKQILLVQLGDSK 633
Query: 182 PFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPK 241
+G + + +A A+L LTL+FPK
Sbjct: 634 ----KGWHRIGDQLA---------------------------------ARLACLTLNFPK 656
Query: 242 LRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
L +IW+ + A+L + K R+EP+A A + G+
Sbjct: 657 LSIIWAMNALSAAELLIDFKWKRNEPNANEAVAFGK 692
>gi|219129574|ref|XP_002184960.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217403455|gb|EEC43407.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 975
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 172/346 (49%), Gaps = 73/346 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK-VKVFFMQYGESVEEQAYLSDLRREKK 68
L+ ++P V+ Y+ DVA IR VE+Y+ + V+VFF+ + S E++ ++ L RE+
Sbjct: 621 LQDMEPQYVVLYDTDVAFIRSVEMYEALSTHSDPVRVFFLMFEASSEQKTFMKTLEREQN 680
Query: 69 AFEYLIQEKTNMAVPTEQDGVSTEPEESC----------------------GR------- 99
AFE +I K M P Q + E +++ GR
Sbjct: 681 AFERMIDHKKTMPPPALQVVGTQEMQQAMHVGSAGGSYMDGSLPLAFDSRRGRGKEDRSK 740
Query: 100 ----VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG 155
+ VD+REFRS LP +LH+ G+ + PVT++VGD++LS CVERKSISDL GS SG
Sbjct: 741 ERRDIAVDVREFRSALPSILHQGGMRLAPVTLTVGDFVLSNVHCVERKSISDLFGSFASG 800
Query: 156 RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNY 215
RLYTQ + M +HY P LLIEFD K F LQ +
Sbjct: 801 RLYTQAEAMSKHYKCPCLLIEFDPT--------------------------KSFCLQNSN 834
Query: 216 YLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
L +I +S + +K+ LLT+HFP+LR++WS P+ T ++F ELK DE E A I
Sbjct: 835 ELGVEIRTES--VCSKIALLTMHFPQLRILWSRSPHETLRIFRELKTNHDEVDVEKAIDI 892
Query: 276 GQTPNEDY-----------TDRYNAAIEDFISKLPGMAEWSRARTL 310
G+ + D D N D + +LPG+ S R +
Sbjct: 893 GRNESPDALLQLPAGLAEGEDEINEMARDMLLRLPGVNVHSARRIM 938
>gi|444319284|ref|XP_004180299.1| hypothetical protein TBLA_0D02790 [Tetrapisispora blattae CBS 6284]
gi|387513341|emb|CCH60780.1| hypothetical protein TBLA_0D02790 [Tetrapisispora blattae CBS 6284]
Length = 1060
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 160/302 (52%), Gaps = 56/302 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I Y D+ IR+ E+Y+ +++FM YG+S+EEQ YL+ ++REK A
Sbjct: 690 LQEIMPSFIIMYEPDLTFIRKAELYKKINQHNSPQIYFMYYGDSIEEQNYLTSIKREKDA 749
Query: 70 FEYLIQEKTNMAVPTEQD----------------------------GVSTEPEESCGRVI 101
F LI+E +A E D G + + + VI
Sbjct: 750 FSKLIRENAMLAHHFEADEDLSHFKNLAERKLKLNRLRRSNTRVAGGQAGLQDYTQDIVI 809
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL + G+ + P ++VGDYI+SPDIC+ERKSISDLIGSLQ+ RL +Q
Sbjct: 810 VDSREFNASLPGLLFRFGVRVIPCMLTVGDYIISPDICIERKSISDLIGSLQNNRLISQC 869
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYY----- 216
++M +HY P LLIEFD N+ F L+ PF + NY
Sbjct: 870 KKMSKHYKYPTLLIEFDTNQSFSLE---------------------PFSERRNYRNNQLS 908
Query: 217 LSRDIAAKSS--DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
+ I++K S +I K+ L + FP L++IWSS P T + ELK GR++P ++
Sbjct: 909 TTHPISSKLSQDEIQMKISKLVIKFPNLKIIWSSSPLQTVNILLELKLGREQPDPNLSMD 968
Query: 275 IG 276
IG
Sbjct: 969 IG 970
>gi|410082253|ref|XP_003958705.1| hypothetical protein KAFR_0H01600 [Kazachstania africana CBS 2517]
gi|372465294|emb|CCF59570.1| hypothetical protein KAFR_0H01600 [Kazachstania africana CBS 2517]
Length = 1079
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 163/302 (53%), Gaps = 56/302 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ P+ +I + D++ IR+VE+Y+ Q E K+FFM YGESVEEQ +L ++REK A
Sbjct: 711 LQETMPSYIIMFEPDLSFIRKVELYRAIQKENPPKIFFMYYGESVEEQGHLLAIKREKDA 770
Query: 70 FEYLIQEKTNMAVPTE-QDGVS-----------------TEPEESCGR----------VI 101
F LI+E +A E ++ +S T + G+ VI
Sbjct: 771 FTKLIKENAQLASHFEAEEDLSHFKNLAERKMKLNKLRRTNTRNAGGQKGYQHFTQDVVI 830
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL + G+ + P +SVGDYI+SPDIC+ERKSI+DLIGSLQ+ RL Q
Sbjct: 831 VDSREFNATLPGLLFRYGVRVIPCMLSVGDYIISPDICIERKSIADLIGSLQNNRLAVQC 890
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYY----- 216
++M ++Y LLIEFD N+ F L+ PF + NY
Sbjct: 891 KKMVQYYKYATLLIEFDENQSFSLE---------------------PFSERRNYRKQDIS 929
Query: 217 LSRDIAAKSS--DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
+ I++K S +I KL L + FP L++IWSS P + + ELK GRD+P +A S
Sbjct: 930 TTHPISSKLSQDEIQRKLSRLVMKFPTLKIIWSSSPLQSVNIILELKLGRDQPDPNLAVS 989
Query: 275 IG 276
G
Sbjct: 990 YG 991
>gi|255715345|ref|XP_002553954.1| KLTH0E11000p [Lachancea thermotolerans]
gi|238935336|emb|CAR23517.1| KLTH0E11000p [Lachancea thermotolerans CBS 6340]
Length = 1019
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 170/329 (51%), Gaps = 58/329 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L P+ +I Y D+A IR+VE+++ + +KV+FM YG+S EEQ++L +++EK A
Sbjct: 656 LQELLPSHIIMYEPDLAFIRRVEMFKALHKDWPLKVYFMYYGDSFEEQSHLIAIKKEKDA 715
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR---------------------------VIV 102
F LI+E + +A E D + + R V+V
Sbjct: 716 FTRLIREHSGLAQHFEADEDLSRYKNLAQRKLLLNQSLRNSRLAGGQKGYDAVTGDVVVV 775
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
DMREFR+ LP LL++ G+ + P +++GDYILSP ICVERKSISDLIGS ++GRL Q +
Sbjct: 776 DMREFRAPLPGLLYRYGVKVIPCMLTIGDYILSPQICVERKSISDLIGSFKNGRLNDQCK 835
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF---ELQGNYYLSR 219
+M R+Y P LLIEFD F L+ PF S
Sbjct: 836 KMSRYYEYPTLLIEFDDGDSFSLE---------------------PFSEKRYNSASSTSH 874
Query: 220 DIAAK--SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG- 276
I +K +I +L L + FP LR++WSS P T L +LK GR++P IG
Sbjct: 875 PIGSKLMQDEIQMQLAQLIMKFPSLRILWSSSPLQTVNLILDLKLGREQPDPTTCVEIGV 934
Query: 277 ---QTPNEDYTDRYNAAIEDFISKLPGMA 302
+ +D T+ N ++ +S +PG++
Sbjct: 935 NRKSSGAKDKTNHSNEKFKELLS-IPGLS 962
>gi|374109233|gb|AEY98139.1| FAFR456Cp [Ashbya gossypii FDAG1]
Length = 1017
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 52/335 (15%)
Query: 2 FAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLS 61
+ +D S L L P+ VI Y +++ IRQVEVY+ + +K++FM YGESVEEQA+L
Sbjct: 642 YHKDTESLLYELLPSFVIMYEPNLSFIRQVEVYRATHTNKYIKIYFMYYGESVEEQAHLL 701
Query: 62 DLRREKKAFEYLIQEKTNMA-----------------------------VPTEQDGVSTE 92
++++E++AF LI+E +A + Q ++ +
Sbjct: 702 NIKKEREAFTKLIRENAQLAQHFEAPEDISRYKNLAQRRMQLIRQKNTRIAGGQAAIAVQ 761
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
++ VIVD+REFR+ LP LL++ G+ + P ++VGDYI++P IC+ERKSI+DLIGS
Sbjct: 762 TDDI---VIVDIREFRAPLPGLLYRYGVKVLPCMLTVGDYIITPKICIERKSIADLIGSF 818
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ 212
++GRL Q ++M ++Y P LL+EFD ++ F L+ I NK +
Sbjct: 819 KNGRLQKQCREMAKYYELPTLLLEFDDSESFSLEPFGERGYTTTTSSTIHPISNKLMQ-- 876
Query: 213 GNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
+I +L L L FP L++IWSS P T + +LK GR++P+ VA
Sbjct: 877 -------------EEIQLELAKLVLRFPNLKIIWSSSPLQTVNIILDLKSGREQPNPSVA 923
Query: 273 SSIGQTPNE-DYTDRYNAAIE----DFISKLPGMA 302
G++ + D AIE +S +PG++
Sbjct: 924 VEAGKSIKKTDSNGNSKIAIETKQFHELSTVPGLS 958
>gi|45198974|ref|NP_986003.1| AFR456Cp [Ashbya gossypii ATCC 10895]
gi|44985049|gb|AAS53827.1| AFR456Cp [Ashbya gossypii ATCC 10895]
Length = 1015
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 184/340 (54%), Gaps = 64/340 (18%)
Query: 2 FAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLS 61
+ +D S L L P+ VI Y +++ IRQVEVY+ + +K++FM YGESVEEQA+L
Sbjct: 642 YHKDTESLLYELLPSFVIMYEPNLSFIRQVEVYRATHTNKYIKIYFMYYGESVEEQAHLL 701
Query: 62 DLRREKKAFEYLIQEKTNMA-----------------------------VPTEQDGVSTE 92
++++E++AF LI+E +A + Q ++ +
Sbjct: 702 NIKKEREAFTKLIRENAQLAQHFEAPEDISRYKNLAQRRMQLIRQKNTRIAGGQAAIAVQ 761
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
++ VIVD+REFR+ LP LL++ G+ + P ++VGDYI++P IC+ERKSI+DLIGS
Sbjct: 762 TDDI---VIVDIREFRAPLPGLLYRYGVKVLPCMLTVGDYIITPKICIERKSIADLIGSF 818
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ 212
++GRL Q ++M ++Y P LL+EFD ++ F L+ PF +
Sbjct: 819 KNGRLQKQCREMAKYYELPTLLLEFDDSESFSLE---------------------PFGER 857
Query: 213 GNYYLSRD----IAAK--SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDE 266
G + I+ K +I +L L L FP L++IWSS P T + +LK GR++
Sbjct: 858 GYTTTTSSTIHPISNKLMQEEIQLELAKLVLRFPNLKIIWSSSPLQTVNIILDLKSGREQ 917
Query: 267 PSAEVASSIGQTPNEDYTDRYNAAIE----DFISKLPGMA 302
P+ VA G++ + ++ N+ IE +S +PG++
Sbjct: 918 PNPSVAVEAGKSIKKTDSNG-NSKIETKQFHELSTVPGLS 956
>gi|50307255|ref|XP_453606.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642740|emb|CAH00702.1| KLLA0D12210p [Kluyveromyces lactis]
Length = 1056
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 173/323 (53%), Gaps = 45/323 (13%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P+ +I Y ++A +R++EVY+ KV+FM YG+SVEEQ++LS ++REK+A
Sbjct: 685 LHELMPSYIIIYEPNLAFVRKLEVYKAIHRHNPPKVYFMYYGDSVEEQSHLSSIKREKEA 744
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR--------------------------VIVD 103
F LI+E +NMA E D + + R V+VD
Sbjct: 745 FTKLIREHSNMAQHFETDEDLSRYKNLAHRKMQLSRMKNSRIAGGQDFLNPMTYDVVVVD 804
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
MREFR+ LP LL++ G+ + P +++GDY+++PDIC+ERKSI+DLIGS ++GRL Q++
Sbjct: 805 MREFRAALPGLLYRYGVRVVPCMLTIGDYVITPDICIERKSIADLIGSFKNGRLDKQIRS 864
Query: 164 MCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA 223
+ R Y P LLIEFD ++ F L+ + R++ A H +L
Sbjct: 865 LSRFYKYPTLLIEFDDSQSFSLEP--FSERNVYASAASSTVHPISGKLM----------- 911
Query: 224 KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS----AEVASSIGQTP 279
+I +L L + +P L+++WSS P T +F +LK R++P + S+ QT
Sbjct: 912 -QEEIQRELSHLVMKYPSLKIVWSSSPLQTVNIFLDLKTNREQPDPVKCVQFGSTKKQTG 970
Query: 280 NEDYTDRYNAAIEDFISKLPGMA 302
N ++ ++ +PG++
Sbjct: 971 KNKKDTESNNKFKNLLT-IPGLS 992
>gi|154291595|ref|XP_001546379.1| hypothetical protein BC1G_15066 [Botryotinia fuckeliana B05.10]
Length = 822
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 21/198 (10%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + +R+VEVY+ + ++ V+V+F+ YG SVEEQ YLS RREK A
Sbjct: 589 LEEVKPRYIIMYEPDTSFVRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSTRREKDA 648
Query: 70 FEYLIQEKTNMAVPTEQDGVSTE-PEE----------SCG----------RVIVDMREFR 108
F LI+EK NM+V D E P+E + G RV+VD+REFR
Sbjct: 649 FTKLIKEKANMSVVLTLDAHGIEDPQEVFLRTINTRIAGGGRLAATAQPPRVVVDVREFR 708
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP LLH R + + P ++VGDY+LSP+ICVERKSI DLI S + GRLY Q + M HY
Sbjct: 709 SSLPSLLHGRSMVVVPCMLTVGDYVLSPNICVERKSIKDLISSFKDGRLYNQAETMLEHY 768
Query: 169 AKPLLLIEFDHNKPFELQ 186
P+LLIEFD K F L+
Sbjct: 769 KSPMLLIEFDQGKSFTLE 786
>gi|50291381|ref|XP_448123.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527434|emb|CAG61074.1| unnamed protein product [Candida glabrata]
Length = 1071
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 160/296 (54%), Gaps = 50/296 (16%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
+ P+ +I Y D+A IR+VE+++ + E K+FF+ YG+S EEQ +L +++EK AF
Sbjct: 708 MMPSYIIMYEPDLAFIRKVEIFRALKRENPPKIFFLYYGDSAEEQTHLLSIKKEKDAFSK 767
Query: 73 LIQEKTNMAVPTE-QDGVS-----------------TEPEESCGR----------VIVDM 104
LI+E +A E Q +S T + G+ V+VD
Sbjct: 768 LIRENATLAQRFEAQTDLSHFKNLAERKLKLSNIRKTNTRTAGGQLGLRELTQDVVLVDT 827
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REF + LP LL + G+ + P ++VGDY+L+PDICVERKSISDLIGSLQ+ RL Q ++M
Sbjct: 828 REFNAALPGLLFRYGVRVIPCMLTVGDYVLTPDICVERKSISDLIGSLQNHRLEAQCKKM 887
Query: 165 CRHYAKPLLLIEFDHNKPFEL----QGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
+HY P L+IEFD + F L + Y SRD + I NK LS+D
Sbjct: 888 SKHYKYPTLMIEFDEGQSFSLEPFSERRLYRSRDSSTTHPI---SNK---------LSQD 935
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
DI KL L + FP LR++W S P + + ELK GR++P +A +G
Sbjct: 936 ------DIQMKLCKLVMKFPGLRIMWCSSPLQSVNIILELKLGREQPDPNIAIELG 985
>gi|358060432|dbj|GAA93837.1| hypothetical protein E5Q_00483 [Mixia osmundae IAM 14324]
Length = 992
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 159/295 (53%), Gaps = 47/295 (15%)
Query: 3 AQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSD 62
+D + L L P +I Y +++ +RQ+E Y+ + V ++V++M Y S EE YL++
Sbjct: 627 GEDDTIMLEELMPKFIIMYEPNLSFVRQIEAYRNSHPGVNIRVYWMTYDTSAEESLYLTE 686
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQD---GVSTEPE-----------------ESCGRVIV 102
+R EK AFE LI+E+ +M +P E + G T E ++I+
Sbjct: 687 IRAEKDAFERLIRERASMVIPLEAEVRPGEETNEELIRTVTSRIGGGGVTLATGKPKIII 746
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
D RE R+ L +L +G+ + P+T++VGDYILSP+I VERKSI DLI S+ GRLY Q +
Sbjct: 747 DRRENRAHLYNVLDSQGVQLLPLTLAVGDYILSPEIAVERKSIPDLISSMNEGRLYAQCE 806
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
M +Y P+LL++F+ + + LS + +KF
Sbjct: 807 HMGTYYELPILLVDFEERE-------FRLSAHVESKF--------------------SDG 839
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
A D+ +KL LLT+ P+LR+IWSS Y TA++F ELKQ R EP E +G+
Sbjct: 840 ADEYDLESKLILLTMQLPRLRIIWSSSRYQTAKIFAELKQQRAEPDPEKIKLVGE 894
>gi|58270400|ref|XP_572356.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58270402|ref|XP_572357.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228614|gb|AAW45049.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228615|gb|AAW45050.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1099
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 172/318 (54%), Gaps = 45/318 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++A IR++EVY+ + ++V+ M Y S EE +LS ++RE +A
Sbjct: 753 LQELRPRFVVMYEPNLAFIRRLEVYRNCNPGLSLRVYQMIYTNSFEEDRFLSTIQREAEA 812
Query: 70 FEYLIQEKTNMAVP----------------------TEQDGVSTEPEESCGRVIVDMREF 107
F+ LI ++ +M +P + G EE+ R+IVD+RE
Sbjct: 813 FKKLIDDRQSMVIPIYNNNPRAPMRDTVTRSKTTYSSRNAGGGESAEEA--RIIVDIREM 870
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
+ LP L+ G+ + P T++VGDYILSP +CVERKS++DL GS +GRL+TQ + M H
Sbjct: 871 GALLPSLIDSAGIKVVPSTLTVGDYILSPKMCVERKSLADLEGSFNNGRLHTQCEAMTSH 930
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFE-LQGNYYLSRDIAAKSS 226
Y +LLIEFD +K F ++ R+ A + N P E + +YL
Sbjct: 931 YETCILLIEFDEDK-FGMRTKEDARREAAGRA------NDPDETWRDTFYLQ-------- 975
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED--YT 284
+KL LL LHFP+LR+IWSS P+ + ++ +LK DEP A+ G + E +
Sbjct: 976 ---SKLALLALHFPRLRIIWSSSPHESVKILSDLKLNHDEPDEITATLKGSSEGEQGVRS 1032
Query: 285 DRYNAAIEDFISKLPGMA 302
NAA + + +PG++
Sbjct: 1033 GVENAAAVEMLRSIPGVS 1050
>gi|134117864|ref|XP_772313.1| hypothetical protein CNBL1810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254926|gb|EAL17666.1| hypothetical protein CNBL1810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1099
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 172/318 (54%), Gaps = 45/318 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++A IR++EVY+ + ++V+ M Y S EE +LS ++RE +A
Sbjct: 753 LQELRPRFVVMYEPNLAFIRRLEVYRNCNPGLSLRVYQMIYTNSFEEDRFLSTIQREAEA 812
Query: 70 FEYLIQEKTNMAVP----------------------TEQDGVSTEPEESCGRVIVDMREF 107
F+ LI ++ +M +P + G EE+ R+IVD+RE
Sbjct: 813 FKKLIDDRQSMVIPIYNNNPRAPMRDTVTRSKTTYSSRNAGGGESAEEA--RIIVDIREM 870
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
+ LP L+ G+ + P T++VGDYILSP +CVERKS++DL GS +GRL+TQ + M H
Sbjct: 871 GALLPSLIDSAGIKVVPSTLTVGDYILSPKMCVERKSLADLEGSFNNGRLHTQCEAMTSH 930
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFE-LQGNYYLSRDIAAKSS 226
Y +LLIEFD +K F ++ R+ A + N P E + +YL
Sbjct: 931 YETCILLIEFDEDK-FGMRTKEDARREAAGRA------NDPDETWRDTFYLQ-------- 975
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED--YT 284
+KL LL LHFP+LR+IWSS P+ + ++ +LK DEP A+ G + E +
Sbjct: 976 ---SKLALLALHFPRLRIIWSSSPHESVKILSDLKLNHDEPDEITATLKGSSEGEQGVRS 1032
Query: 285 DRYNAAIEDFISKLPGMA 302
NAA + + +PG++
Sbjct: 1033 GVENAAAVEMLRSIPGVS 1050
>gi|365987105|ref|XP_003670384.1| hypothetical protein NDAI_0E03240 [Naumovozyma dairenensis CBS 421]
gi|343769154|emb|CCD25141.1| hypothetical protein NDAI_0E03240 [Naumovozyma dairenensis CBS 421]
Length = 1091
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 56/306 (18%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
+ L + P+ +I + D++ +R+VE+++ + KV+FM YG+S+EE+ +L+ +++EK
Sbjct: 694 ASLEEIMPSYIILFEPDLSFVRRVEIHRAIHMNLPPKVYFMYYGDSIEEKIHLTAIKKEK 753
Query: 68 KAFEYLIQEKTNMA--VPTEQD--------------------------GVSTEPEESCGR 99
AF LI+E N+A T +D G S E +
Sbjct: 754 DAFTRLIRENANLAQHFETLEDLSHYKNLAARKSKLNRLKRSSTRNAGGQSALHESTHDV 813
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD REF + LP LL + G+ + P ++VGDYI++PDIC+ERKSI DLIGSLQ+ RL
Sbjct: 814 VIVDTREFNASLPGLLFRYGVRVIPCMLTVGDYIITPDICIERKSIEDLIGSLQNHRLEL 873
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q ++M ++Y P LLIEFD + F L+ PF + Y L
Sbjct: 874 QCKKMLKYYKYPTLLIEFDEGQSFSLE---------------------PFSEKRRYKLKE 912
Query: 220 D-----IAAK--SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
I++K +I +KL L + FP L++IWSS P T + ELK GR++P ++
Sbjct: 913 SSTIHPISSKLTQEEIQSKLAKLVMKFPTLKIIWSSSPLQTVNIILELKLGREQPDPTLS 972
Query: 273 SSIGQT 278
+G T
Sbjct: 973 VGMGGT 978
>gi|405124195|gb|AFR98957.1| hypothetical protein CNAG_05531 [Cryptococcus neoformans var. grubii
H99]
Length = 1105
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 171/318 (53%), Gaps = 45/318 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++A IR++EVY+ + ++V+ M Y S EE +LS ++RE +A
Sbjct: 759 LQELRPRFVVMYEPNLAFIRRLEVYRNCNPGLSLRVYQMIYTNSFEEDRFLSTIQREAEA 818
Query: 70 FEYLIQEKTNMAVP----------------------TEQDGVSTEPEESCGRVIVDMREF 107
F+ LI ++ +M +P + G EE+ R+IVD+RE
Sbjct: 819 FKKLIDDRQSMVIPIYNNNPRAPMRDTVTRSKTTYSSRNAGGGESAEEA--RIIVDIREM 876
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
+ LP L+ G+ + P T++VGDYILSP +CVERKS++DL GS +GRL+TQ + M H
Sbjct: 877 GALLPSLIDSAGIKVVPSTLTVGDYILSPKMCVERKSLADLEGSFNNGRLHTQCEAMTSH 936
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFE-LQGNYYLSRDIAAKSS 226
Y +LLIEFD +K F ++ R+ A + N P E + +YL
Sbjct: 937 YEICILLIEFDEDK-FGMRTKEDARREAAGRA------NDPDETWRDTFYLQ-------- 981
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR 286
+KL LL LHFP+LR+IWSS P+ + ++ +LK DEP A+ G + E
Sbjct: 982 ---SKLALLALHFPRLRIIWSSSPHESVKILSDLKLNHDEPDEITATLKGSSEGEQGVKS 1038
Query: 287 --YNAAIEDFISKLPGMA 302
NAA + + +PG++
Sbjct: 1039 GIENAAAVEMLRSIPGVS 1056
>gi|281208428|gb|EFA82604.1| DNA excision repair protein 4 [Polysphondylium pallidum PN500]
Length = 731
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 171/333 (51%), Gaps = 57/333 (17%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L L+P ++ Y+ +++ RQ+EVYQ +++ V+ + YGES EE+ YLS L REK
Sbjct: 357 SILNELRPRFIVIYDLEISITRQIEVYQAENPAIQIGVYLLFYGESTEERKYLSVLNREK 416
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTE------PEESCG-------------------RVIV 102
+FE LI+EK N+ V T + E PE S ++IV
Sbjct: 417 SSFEKLIREKANLVVDTSTHVDAAEAYKLLDPESSTRVDSRYGGIVRRSLIPTTNPKIIV 476
Query: 103 DMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQ 162
D EF+S LPV LH G I P ++V DY+++P + ERKS+ DLIGS QSGRLY Q++
Sbjct: 477 DSHEFKSSLPVALHGAGYEIIPKRLTVADYVITPTLAAERKSVPDLIGSFQSGRLYAQIE 536
Query: 163 QMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIA 222
M R Y PLLLIE+D +PF I+ LI P EL Y
Sbjct: 537 AMGRIYRNPLLLIEYDIQQPF-----------IS---LI-----SPEELAYTTY------ 571
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP--- 279
+++KL +L FPKLR++WS ++T +F LK+ + EP + + +
Sbjct: 572 -PRFTLSSKLIMLCRSFPKLRVLWSRSAHSTVNIFRRLKELQPEPDPQNIDELTEESVAG 630
Query: 280 -NEDYTDRYNAAIEDFISKLPGMAEWSRARTLN 311
ED YN +D + KLPG+ + + R ++
Sbjct: 631 NGED--SEYNYGPQDVLRKLPGITDLNIKRVMD 661
>gi|328873578|gb|EGG21945.1| DNA excision repair protein 4 [Dictyostelium fasciculatum]
Length = 950
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 166/342 (48%), Gaps = 78/342 (22%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L P +I Y+ADV IRQ+EV++ + + V+F+ Y +S+EE Y+S LRREK A
Sbjct: 565 LEDATPQHIIIYDADVTIIRQIEVFRAENPHMTLFVYFLLYSDSIEESKYISILRREKDA 624
Query: 70 FEYLIQEK----------TNMAVPTEQD--------------------GVSTEPEESCG- 98
FE LI+EK N + TE++ S+ + G
Sbjct: 625 FERLIREKASLIDLSGGLNNTTITTEKEQEVARIKNITEEELEMLPSANTSSRADSRTGG 684
Query: 99 ----------------RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVER 142
+V+VD EF+S LPV LH I P+ + GDY++SP C+ER
Sbjct: 685 VVKYRSALRRGQGTKKKVVVDSFEFKSSLPVALHFGEYQIIPLRLVTGDYVISPLYCIER 744
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIE 202
KSISDLIGS SGRL+ Q+ QM RHY P+LLIEFD +PF L L
Sbjct: 745 KSISDLIGSFGSGRLFHQIDQMGRHYTNPILLIEFDARQPFMLHTQEEL----------- 793
Query: 203 FDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262
N P+ Q +A +++KL +L+ FPK+R+IW+ +T +F LK+
Sbjct: 794 ---NLPYISQ--------VA-----LSSKLMMLSRAFPKMRIIWARSSRSTVAVFDRLKE 837
Query: 263 GRDEPSAEVASSIGQTPNEDYTD-RYNAAIEDFISKLPGMAE 303
EP S+I P + YN A D + KLPG+ E
Sbjct: 838 NGPEPD---PSNINVLPEPSANNSEYNYAPHDVLKKLPGINE 876
>gi|403213425|emb|CCK67927.1| hypothetical protein KNAG_0A02380 [Kazachstania naganishii CBS
8797]
Length = 1087
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 163/300 (54%), Gaps = 52/300 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ P+ +I + D++ IR+VE+Y+ + S+ KV+FM YGESVEEQ +L+ ++REK A
Sbjct: 705 LQEQMPSYIIIFEPDLSFIRRVELYRASCSDNPCKVYFMYYGESVEEQNHLTAIKREKDA 764
Query: 70 FEYLIQEKTNMAVPTE-------------------------------QDGVSTEPEESCG 98
F LI+E N+A E Q G ++
Sbjct: 765 FSKLIRENANIAHHYETMEDISHFKNLAERKIKLSKINRGNARNAGGQRGFQNYTQDV-- 822
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
V+VD REF + LP LL + G+ + P +SVGDYI++P+IC+ERKSISDLIGSLQ+ RL
Sbjct: 823 -VVVDTREFNASLPGLLFRYGVRVVPCMLSVGDYIITPEICLERKSISDLIGSLQNNRLV 881
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
+Q ++M Y P LLIEFD ++ F L+ F + + Q N +
Sbjct: 882 SQCKKMQAFYKYPTLLIEFDGSQSFSLE---------------PFGEGRSYRNQ-NASTT 925
Query: 219 RDIAAKSS--DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
I++K S +I +KL + + FP+LR+IWSS P + + ELK GR++P+ A G
Sbjct: 926 HPISSKLSQEEIQSKLAKVVMKFPRLRIIWSSSPLQSVNIILELKLGREQPNPTTAIEYG 985
>gi|449016334|dbj|BAM79736.1| probable DNA repair endonuclease XPF [Cyanidioschyzon merolae
strain 10D]
Length = 1012
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 152/287 (52%), Gaps = 41/287 (14%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
+P S+I + + +R++EVYQ A S K++V+ + Y ES E + Y + + EK AF+
Sbjct: 628 QPCSIIMLDPTLQHVREIEVYQAAYSRFAKIRVYAVFYEESPEYELYCNAIADEKHAFQT 687
Query: 73 LIQEKTNMAVPTEQDGV----------------------STEPEESCGR--VIVDMREFR 108
LI+ K +MAV +Q + P S GR ++VD+REFR
Sbjct: 688 LIRHKASMAVRLDQSSAVAVPDTGPERIYWPLWAGSLAKADRPSPSSGRPQILVDVREFR 747
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP L++ G + P T+ VGDY+L+PDICVERKSI DL SL SGRLYTQ Q MCR Y
Sbjct: 748 STLPGCLYQAGFELLPRTLKVGDYVLTPDICVERKSIPDLTSSLASGRLYTQCQAMCRLY 807
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
PLL+IE LQ + S A F + F+ ++ + I
Sbjct: 808 RYPLLMIE--------LQEDDIGSTGAKAHVTNLFAPSLSFQENSSHGPATGIG------ 853
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
KL LLT+HFP+LRL+W GP A++F LK G EPS E I
Sbjct: 854 --KLCLLTIHFPRLRLLWCRGPQAGAEVFGTLKIGEAEPSGEPTGQI 898
>gi|452821619|gb|EME28647.1| DNA excision repair protein ERCC-4 [Galdieria sulphuraria]
Length = 864
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 162/323 (50%), Gaps = 51/323 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L SLKP VI Y IRQ+EVYQ +E+ ++VF + Y SVE+ + L E +
Sbjct: 527 LESLKPRFVIIYEPHNCLIRQLEVYQNEFTELPLEVFCLVYENSVEKDKFEKALEYEAHS 586
Query: 70 FEYLIQEKTNMAV--PTEQDGVSTEPEESC------------------GRVIVDMREFRS 109
FE LI+EK NM V E V E++ GR+ VDMREFRS
Sbjct: 587 FERLIREKENMVVFVDDEHSNVDQNREDTSKFGIVEVGTLNRDSRKIGGRIYVDMREFRS 646
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
+LP LL+ G + PVT+S+GDYILS I VERKS+SDL SLQSGRL++QVQQ+CRH
Sbjct: 647 KLPQLLYDTGAELIPVTLSIGDYILSKSIFVERKSLSDLTSSLQSGRLFSQVQQLCRHCR 706
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDIT 229
P LLIEF K F L L +++ P +
Sbjct: 707 FPCLLIEFPPGKSFLLSSFSELVKEL-----------NPI-----------------SVL 738
Query: 230 AKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY-N 288
++L LLT+HFP LRLIW Y +F LK EP E+ N+ + Y N
Sbjct: 739 SRLVLLTIHFPLLRLIWCHSEYFCGSVFAALKSS--EPIDELPEIDSLVQNDTDSKEYDN 796
Query: 289 AAIEDFISKLPGMAEWSRARTLN 311
+ D + +LPG+ E + +N
Sbjct: 797 YSAVDLLLQLPGVHERNVQNIVN 819
>gi|307107063|gb|EFN55307.1| hypothetical protein CHLNCDRAFT_134272 [Chlorella variabilis]
Length = 1167
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 171/344 (49%), Gaps = 73/344 (21%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI 74
P V+ Y+ DVA R +E+Y+ A+ + V+ ++Y +S E Y + + RE++ FE LI
Sbjct: 811 PGYVVVYDPDVAFTRHLELYKAARPGQPLCVYLLRYEDSFEMDRYQAAVARERQVFESLI 870
Query: 75 QEKTNMAVP----------------TEQD-------GVSTEPEESCG----------RVI 101
+ K M +P T +D G S G RV+
Sbjct: 871 RNKEIMILPIAAAREQVDPARRLPATHRDEELPLLGGASNALTRRAGGRAPSRPDPKRVV 930
Query: 102 VDMREFRSELPVLLHKR------GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG 155
VD+REF S LP +LH++ GL + P+T+ VGDY+LSPDIC ERKSISDL SL SG
Sbjct: 931 VDVREFMSSLPAVLHQQASGAGWGLEVVPLTLEVGDYVLSPDICAERKSISDLRASLASG 990
Query: 156 RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNY 215
RLY Q + M +HY P+LLIEF+ + K F LQ +
Sbjct: 991 RLYHQAEAMTKHYKTPVLLIEFEGD--------------------------KAFALQASS 1024
Query: 216 YLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
+ ++ S + ++ LL LHFP+LRLIWS + TA +F +LK +DEP A+++
Sbjct: 1025 EIGDEVQLHS--LMGRIALLVLHFPRLRLIWSRSLHATADIFQQLKANQDEPDPVTAATV 1082
Query: 276 G-----QTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEV 314
G + N A D + +LPG+ E + R+L EV
Sbjct: 1083 GVPVEAEGAAAAGEAVVNQAAIDLLRRLPGVTE-ANWRSLMREV 1125
>gi|254577019|ref|XP_002494496.1| ZYRO0A02860p [Zygosaccharomyces rouxii]
gi|238937385|emb|CAR25563.1| ZYRO0A02860p [Zygosaccharomyces rouxii]
Length = 1053
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 170/313 (54%), Gaps = 42/313 (13%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
S L+ + P+++I Y D+ IR+VE+++ E+ V FM Y SVEEQ +L +R+EK
Sbjct: 680 SYLQEIMPSNIIMYEPDLTFIRRVEIHRAIHREMPPNVCFMYYSNSVEEQGHLVSIRKEK 739
Query: 68 KAFEYLIQEKTNMAVPTEQD----------------------------GVSTEPEESCGR 99
AF LI+E + ++ E D G + + +
Sbjct: 740 DAFTKLIRENSMLSHHFEADEDLSHYKNLAERKVKLNKLRRITTRVAGGQAALADFTQDI 799
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSI+DLIGS+Q+ RL +
Sbjct: 800 VIVDTREFNAALPGLLYRYGVRVVPCMLTVGDYVITPDICIERKSIADLIGSIQNRRLVS 859
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q ++M HY P LLIEF+ + F L+ + R+ +K EL + +S
Sbjct: 860 QCKKMRSHYKYPTLLIEFEEGQSFSLEP-FSERRNYKSK-----------ELSTVHPISN 907
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
++ +I ++L L + FP L++IWSS P T + ELK GR++P + ++G
Sbjct: 908 KLS--QDEIQSELAKLVMRFPGLKIIWSSSPLQTVNMILELKIGREQPDPSQSVALGTRR 965
Query: 280 NEDYTDRYNAAIE 292
++ +++ AA E
Sbjct: 966 KQEKSEKKAAAKE 978
>gi|156838356|ref|XP_001642885.1| hypothetical protein Kpol_1007p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113462|gb|EDO15027.1| hypothetical protein Kpol_1007p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 1062
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 160/308 (51%), Gaps = 56/308 (18%)
Query: 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK 67
+ L+ + P+ +I Y D+ +R +E+Y+ E ++FM YG+S+EEQ +L+ +++EK
Sbjct: 698 TALQEVMPSHIIMYEPDLTFVRNLEIYRAINHEQAPVIYFMYYGDSIEEQRHLTAIKKEK 757
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGR---------------------------- 99
AF LI+E +A E +G + + R
Sbjct: 758 DAFTKLIRENAMLAQHFETEGDLSHYKNLADRKLQLSRLRNTSTRIAGGQNLLHEVTQDV 817
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD REF + LP LL++ G+ + P ++VGDYI++PDIC+ERKS++DLIGS + RL +
Sbjct: 818 VIVDSREFNASLPGLLYRYGVCVIPCMLTVGDYIITPDICIERKSVADLIGSFLNNRLES 877
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYL-- 217
Q ++M ++Y P LLIEFD ++ F L+ PF + +Y
Sbjct: 878 QCKKMAKYYKFPTLLIEFDEDQSFSLE---------------------PFAEKRSYRRNE 916
Query: 218 SRDIAAKSS-----DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
S + SS +I KL L L FP L++IWSS P T + ELK GR +P V+
Sbjct: 917 SSTVHQISSTLSQFEIQMKLSKLALKFPNLKIIWSSSPLQTVNIILELKLGRSQPDPSVS 976
Query: 273 SSIGQTPN 280
++G + N
Sbjct: 977 MALGVSKN 984
>gi|321264616|ref|XP_003197025.1| single-stranded DNA endonuclease; Rad1p [Cryptococcus gattii WM276]
gi|317463503|gb|ADV25238.1| Single-stranded DNA endonuclease, putative; Rad1p [Cryptococcus
gattii WM276]
Length = 1112
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 170/318 (53%), Gaps = 45/318 (14%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++ IR++EVY+ + ++V+ M Y S EE +LS ++RE +A
Sbjct: 766 LQELRPRFVVMYEPNLPFIRRLEVYRNCNPGLSLRVYQMIYTNSFEEDRFLSTIQREAEA 825
Query: 70 FEYLIQEKTNMAVP----------------------TEQDGVSTEPEESCGRVIVDMREF 107
F+ LI ++ +M +P + G EE+ R+IVD+RE
Sbjct: 826 FKKLIDDRQSMVIPIYNNNPRAPMRDTVTRSKTTYSSRNAGGGESAEEA--RIIVDIREM 883
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
+ LP L+ G+ + P T++VGDYILSP +CVERKS++DL GS +GRL+TQ + M H
Sbjct: 884 GALLPSLIDSAGIKVIPSTLTVGDYILSPKMCVERKSLADLEGSFNNGRLHTQCEAMTSH 943
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFE-LQGNYYLSRDIAAKSS 226
Y +LLIEFD +K F ++ R+ A + N P E + +YL
Sbjct: 944 YEICILLIEFDEDK-FGMRTKEDARREAAGRA------NDPDETWRDTFYLQ-------- 988
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED--YT 284
+KL LL LHFP+LR+IWSS P+ + ++ +LK DEP A+ G + E +
Sbjct: 989 ---SKLALLALHFPRLRIIWSSSPHESVKILSDLKLNHDEPDEIKATLKGSSEGEQGVRS 1045
Query: 285 DRYNAAIEDFISKLPGMA 302
NA + + +PG++
Sbjct: 1046 GIENATAVEMLRSIPGVS 1063
>gi|147821195|emb|CAN74882.1| hypothetical protein VITISV_025993 [Vitis vinifera]
Length = 1050
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 147/282 (52%), Gaps = 58/282 (20%)
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQD------GVSTEPE----------E 95
+S E Q + + + RE AFE LI++K+ M +P +QD S EP+ +
Sbjct: 748 DSTEVQKFEASIXRENGAFESLIRQKSLMMIPVDQDVRGLGLNSSIEPQAITSQNSITRK 807
Query: 96 SCGR--------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISD 147
+ GR VIVDMREF S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI D
Sbjct: 808 AGGRKEVEKEIQVIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQD 867
Query: 148 LIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNK 207
L GS SGRLY Q + M R+Y P+LLIEF +K
Sbjct: 868 LFGSFASGRLYHQXETMVRYYRIPVLLIEFSQDKS------------------------- 902
Query: 208 PFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
F Q + D+ S I +KL LL LHFP+LR++WS + TA++F LK +DEP
Sbjct: 903 -FSFQSASEIGDDVTPNS--IISKLSLLVLHFPRLRIVWSRSLHATAEIFASLKANQDEP 959
Query: 268 S------AEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAE 303
V S G N+ + YN + + + +LPG+ +
Sbjct: 960 DEAKAIRVGVPSEEGIVENDVRAENYNTSAVELLRRLPGVTD 1001
>gi|367010004|ref|XP_003679503.1| hypothetical protein TDEL_0B01630 [Torulaspora delbrueckii]
gi|359747161|emb|CCE90292.1| hypothetical protein TDEL_0B01630 [Torulaspora delbrueckii]
Length = 1055
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 158/304 (51%), Gaps = 59/304 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFF-MQYGESVEEQAYLSDLRREKK 68
L+ L P+ +I Y D+ IR+VE+++ E+ KVFF G + + L +++EK
Sbjct: 678 LQELMPSFIIMYEPDLCFIRRVEIHRAIHREIPPKVFFSCIMGIVSKSKGILLTIKKEKD 737
Query: 69 AFEYLIQEKTNMAVPTEQD----------------------------GVSTEPEESCGRV 100
AF LI+E +A E D G + E + V
Sbjct: 738 AFTKLIREHAMLAHHFEADDDLSHFKNLAERKLKLNGLRKNNTRVAGGQAALTELTQDIV 797
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VD REF + LP LL++ G+ + P ++VGDYI++PDICVERKSISDLIGSLQ+ RL +Q
Sbjct: 798 VVDSREFNASLPGLLYRYGVRVVPCMLTVGDYIITPDICVERKSISDLIGSLQNNRLASQ 857
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
++M RHY P LLIEFDH + F L+ PF + NY S+D
Sbjct: 858 CKKMSRHYKYPTLLIEFDHGQSFSLE---------------------PFSERRNYR-SKD 895
Query: 221 ------IAAKSSDITAKLQL--LTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
I++K S ++QL L + FP LR+IWSS P T + ELK GR++P ++
Sbjct: 896 SSTVHPISSKLSQDEIQMQLSKLVMRFPGLRIIWSSSPLQTVNIILELKLGREQPDPTLS 955
Query: 273 SSIG 276
+G
Sbjct: 956 VGLG 959
>gi|224002330|ref|XP_002290837.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974259|gb|EED92589.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 3340
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 162/344 (47%), Gaps = 80/344 (23%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV----KVKVFFMQYGESVEEQAYLSDLRR 65
LR L P+ VI ++ + IR +E+Y V +++VFF+ Y S E ++ L R
Sbjct: 2192 LRDLSPSYVIMVDSSPSFIRSLEIYSNGMDNVPKEDRLRVFFLLYEHSAELHNFIHTLDR 2251
Query: 66 EKKAFEYLIQEKTNM-----------------------------AVPTEQDGVSTEPEES 96
EK+AF+ LI K M ++P D + ++
Sbjct: 2252 EKEAFDRLIDHKKRMPRSLPSFNNFSTQEMQQARGGFGGSYAGGSLPLSMDTRTGGGKQL 2311
Query: 97 CGR----VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+ + VD+REFRS LP +LH+ G+ I PVT+ VGD+ILS C+ERKSISDL GS
Sbjct: 2312 VSKERRDIAVDVREFRSSLPSILHQGGMRIAPVTLIVGDFILSNVHCIERKSISDLFGSF 2371
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ 212
SGRLY+Q + M +HY LLIEFD +K FELQ + L DI
Sbjct: 2372 ASGRLYSQAEAMLKHYKCSCLLIEFDPSKTFELQSKHDLGGDI----------------- 2414
Query: 213 GNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
+ I +KL LL +HFPKLR +WS P+ T +LF +LK+ E + A
Sbjct: 2415 -----------RVDSICSKLVLLAMHFPKLRYLWSKSPHETLKLFKKLKRNHQEVDVDRA 2463
Query: 273 SSIG---------------QTPNEDYTDRYNAAIEDFISKLPGM 301
IG ++ D N A + + +LPG+
Sbjct: 2464 VEIGTNDSLDDLLFDGGDEHNDEDNGNDDVNEAAQRMLLRLPGV 2507
>gi|397633965|gb|EJK71209.1| hypothetical protein THAOC_07372 [Thalassiosira oceanica]
Length = 866
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 163/344 (47%), Gaps = 80/344 (23%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVY--------QCAQSEVKVKVFFMQYGESVEEQAYLS 61
L + P +VI Y++D + IR +E+Y + + + +++VFF+ Y E +L
Sbjct: 505 LNDIDPYAVILYDSDPSFIRSLEIYSNLSKTTSRPSDEDNRLQVFFLLYEACQEHFDFLK 564
Query: 62 DLRREKKAFEYLIQEKTNM---------------------------AVPTEQD---GVST 91
L REK AF+ LI+ + M +P D G
Sbjct: 565 TLDREKDAFDRLIEHRKRMPRAVACYNHYTFQEMQMTRGAAGSYGGGLPLSADTRTGGGK 624
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGS 151
+ + + VD+REFRS LP +LH+ G+ + PVT++VGD++LS CVERKSISDL S
Sbjct: 625 KHSKERRDIAVDVREFRSTLPSILHQGGMRLAPVTLAVGDFVLSTVHCVERKSISDLFQS 684
Query: 152 LQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL 211
+GRL Q + M RHY P LLIEFD NK F L
Sbjct: 685 FTNGRLADQAEAMSRHYRCPCLLIEFDA--------------------------NKTFSL 718
Query: 212 QGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEV 271
Q L DI S IT+KL LL +HFPKLRL+WS P+ T +LF +LK+ +E + E
Sbjct: 719 QNVCDLGSDIRKDS--ITSKLTLLCMHFPKLRLLWSRSPHETLKLFKKLKRNHEEVNVEK 776
Query: 272 ASSIGQTP--------------NEDYTDRYNAAIEDFISKLPGM 301
A +G NED + N + + +LPG+
Sbjct: 777 AIEVGSNDSLDELLRLGEDGAYNEDDAEGPNETAKRMLLRLPGV 820
>gi|392575996|gb|EIW69128.1| hypothetical protein TREMEDRAFT_62855 [Tremella mesenterica DSM
1558]
Length = 1093
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 153/280 (54%), Gaps = 42/280 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++A IR++EVY+ + + ++V+ + Y S EE +LS + RE +A
Sbjct: 737 LQELRPRFVVMYEPNLAFIRRLEVYKNSNPGLALRVYQLIYTNSFEEDRFLSTMSREAEA 796
Query: 70 FEYLIQEKTNMAVP----------------------TEQDGVSTEPEESCGRVIVDMREF 107
F+ LI+++ +M +P T G EE+ R+IVD+RE
Sbjct: 797 FKKLIEDRQSMVIPIFNNNPRAPMRDAITRSKTTYSTRNAGGGDTGEEA--RIIVDIREM 854
Query: 108 RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRH 167
+ LP L+ G+ + P T++VGDYIL+P +CVERK++ DL S +GRL+TQ + M H
Sbjct: 855 GALLPSLIDAAGIKVVPATLTVGDYILNPKMCVERKALPDLEASFANGRLHTQCEAMAAH 914
Query: 168 YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSD 227
Y +LLIEF+ +K F L+ R+ A + D F LQ
Sbjct: 915 YEICILLIEFEEDK-FGLRTREDARRETAGRKAEPDDWRDAFCLQ--------------- 958
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
+KL LL+LHFP+LR+IWSS P+ + ++ +LK DEP
Sbjct: 959 --SKLVLLSLHFPRLRIIWSSSPHESVKILSDLKLNHDEP 996
>gi|324506753|gb|ADY42875.1| DNA repair endonuclease XPF [Ascaris suum]
Length = 743
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 175/343 (51%), Gaps = 62/343 (18%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
DL +L++ P +I +++D+ +R +E+Y+ E ++++ + Y ES EE+ YL LR
Sbjct: 385 DLIRQLQAFAPNFIILHHSDLVTLRILEMYKACNPEHDLRIYVLMYRESNEEERYLCSLR 444
Query: 65 REKKAFEYLIQEKTNMAVPTE-----------------QDGVS-TEPE-ESCGRVIVDMR 105
RE+ AFE LI+E+ + E +DG S EP+ E RV+VDMR
Sbjct: 445 REQLAFEQLIREQGTLLKSREYDTAREPPPKLKLSKSGRDGRSLDEPDSEENPRVVVDMR 504
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EF SELP +L+KRG + P T+ VGDYILSP I VERKS+ DL SL SGR++ Q++QM
Sbjct: 505 EFNSELPTVLYKRGTDVVPATLEVGDYILSPHIAVERKSLDDLTQSLHSGRVFKQIEQML 564
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
RHY +LL+E + + R I + PF QG +++ +
Sbjct: 565 RHYKTTILLVEANTKNDY---------RKI---------NGGPF--QG------ELSRRC 598
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI---------- 275
+ + L +L +P + ++W+ P ++A++F E K + P + A +I
Sbjct: 599 RETRSLLTVLVRCYPLMSIVWTMDPTHSAEMFDEFKLNQKNPDVDRAVAIRSDDDEGISR 658
Query: 276 ---GQTPNED----YTDRYNAAIEDFISKLPGMAEWSRARTLN 311
GQ+ +E T R N + + KLP M R ++
Sbjct: 659 EDDGQSTSEAGSSVGTQRLNRVLHRQLLKLPNMGSGDVKRMMS 701
>gi|299754812|ref|XP_001828210.2| hypothetical protein CC1G_02791 [Coprinopsis cinerea okayama7#130]
gi|298410935|gb|EAU93561.2| hypothetical protein CC1G_02791 [Coprinopsis cinerea okayama7#130]
Length = 986
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 171/352 (48%), Gaps = 69/352 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P ++ ++ +R+VEVY+ + + V+V+ + Y S EE YL+ +R+EK++
Sbjct: 652 LAEVQPKFIVMCEPNMEFVRRVEVYRSSHPGLGVRVYHLVYRNSCEEHKYLAAIRKEKES 711
Query: 70 FEYLIQEKTNMAVP--------------------TEQDGVSTEPEESCGRVIVDMREFRS 109
FE +I+E+ M +P T G E + +VIVDMREFRS
Sbjct: 712 FERMIKERATMLMPIYEERRGEAGRNDDVIKTISTRLAGGRRELNQEPSKVIVDMREFRS 771
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LP LLH + + P T++VGDYIL+P+ +YTQ + M HY
Sbjct: 772 TLPSLLHAANILVIPATLTVGDYILTPE-------------------MYTQCELMSVHYK 812
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKP---FELQGNYYLSRDIAAKSS 226
P+LLIEF+ +K F L L D+ + + KP + + N + D
Sbjct: 813 YPILLIEFEEDKAFSLD----LITDMKS-------YAKPSGKYPPKKNADPTSDSPYTPV 861
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDR 286
+ +KL LLTL FP+L++IWSS P+ T +F +LK+ EP A ++G + +
Sbjct: 862 SVQSKLVLLTLSFPRLKIIWSSSPFATCDIFTDLKKNFAEPDPTKAVAVGAEEDPEAGKG 921
Query: 287 YNAAIEDFISKLPGMA----EWSRARTLNL------------EVLGLNPGQG 322
N A E+ + LPG+ +W AR N+ E+LG PG+
Sbjct: 922 VNTAAEELVRCLPGVTAKNVKWVMARVRNVRELCEMSLEDVQELLGAEPGKA 973
>gi|50547487|ref|XP_501213.1| YALI0B22242p [Yarrowia lipolytica]
gi|49647079|emb|CAG83466.1| YALI0B22242p [Yarrowia lipolytica CLIB122]
Length = 1039
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 164/321 (51%), Gaps = 50/321 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L L P+ +I Y + R +E+Y +V V+ + YG S EEQA+L+ +R+EK A
Sbjct: 696 LEELGPSGIIMYQPNPEFFRTIEIY-GRNRKVAPNVYLLYYGLSYEEQAFLAAVRKEKDA 754
Query: 70 FEYLIQEKTNMAV---PTEQD--GVSTEPE------------ESCGRVIVDMREFRSELP 112
F LI+E+ M + TE D G+ E S G+++VD+REFR+ LP
Sbjct: 755 FSKLIKERAKMPMLLATTEDDQRGLKIIREANSRIAGGQISTNSYGKILVDVREFRAALP 814
Query: 113 VLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPL 172
+LH G + P ++VGDY+LSP + VERKSI DLI S Q GRL TQ + M R+Y+ +
Sbjct: 815 SILHSYGFQVYPTHLTVGDYVLSPHMVVERKSIPDLIKSFQDGRLLTQCEAMFRYYSYVV 874
Query: 173 LLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKL 232
+LIEF+ F + + P N + ++S++ K+
Sbjct: 875 ILIEFE-----------------VGGFTFDPASDTPGAASANMATLK----QASELRGKI 913
Query: 233 QLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRD----------EPSAEVASSIGQTPNED 282
LL L FPKL++IWSS P TA++F EL+ + EP ++A++ G + D
Sbjct: 914 SLLLLTFPKLKIIWSSSPRETARIFDELRGNNNKGGNKPPWAGEPDPDIAAAYGTSGVGD 973
Query: 283 -YTDRYNAAIEDFISKLPGMA 302
T + N D + +PG+
Sbjct: 974 STTGQQNHMAIDMLRDIPGVT 994
>gi|385301514|gb|EIF45701.1| dna repair protein rad1 [Dekkera bruxellensis AWRI1499]
Length = 268
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 118/207 (57%), Gaps = 25/207 (12%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V VDMREFRS LP L H GL + P ++VGDYILSP ICVERKS+ DL+GSL++GRLY
Sbjct: 37 KVXVDMREFRSHLPFLCHLSGLEVIPCMLTVGDYILSPKICVERKSLPDLVGSLKNGRLY 96
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q +QM R+Y +P LLIEF+ K F LQ PF N L
Sbjct: 97 QQCEQMFRYYERPTLLIEFEEGKSFSLQ---------------------PFTTFKNGVLM 135
Query: 219 RDIAAKSS----DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
R A+++ D+ KL +L +P LR++W+S P+ TA+LF ELK ++EP A S
Sbjct: 136 RTTNAENTYVQRDLQLKLMVLLTSYPSLRILWTSSPFETAKLFKELKLNQNEPDVTEAVS 195
Query: 275 IGQTPNEDYTDRYNAAIEDFISKLPGM 301
G P D +N D I +PG+
Sbjct: 196 KGLNPLFDQESLFNDMSIDLIQXIPGI 222
>gi|402592823|gb|EJW86750.1| ERCC4 domain-containing protein [Wuchereria bancrofti]
Length = 923
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 176/334 (52%), Gaps = 68/334 (20%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+L +L + +P VI Y++D+ ++R +E+Y+ S++ + ++ + Y S EE+ YL LR
Sbjct: 567 NLIRQLEAFEPQVVILYHSDMVSLRLLEMYKACHSDIPLTIYIVMYANSNEEERYLCSLR 626
Query: 65 REKKAFEYLIQEKTNMAVPTEQD------------------GVSTEPEESCGRVIVDMRE 106
+E+ AFE +++E+ + E + G E +VIVDMRE
Sbjct: 627 KEQIAFEEMVREQGTLMSAREYETDREESHRLILMRSTRDAGGRANQNEGNPKVIVDMRE 686
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F+SELP +L+KRG+ + P TI VGDYILSP+I VERK++ DL SL SGR++ Q++QM R
Sbjct: 687 FQSELPTVLYKRGIDVMPATIEVGDYILSPNIAVERKALDDLTQSLHSGRIFKQIEQMLR 746
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNK----PFELQGNYYLSRDIA 222
HY +LLIE + ++ D+ K PF QG +++
Sbjct: 747 HYKNVILLIEAN----------------------VKDDYKKVNGGPF--QG------ELS 776
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPN-E 281
+ + + +L +P + +IW+ P +++++F ELK +EP ++ ++ + E
Sbjct: 777 RRCRETRSLFTILVRTYPAMNVIWTLDPAHSSEMFEELKL--NEPDPDLIQTLAVKSDLE 834
Query: 282 DYTD-------------RYNAAIEDFISKLPGMA 302
+ TD R N+ + +++LPG++
Sbjct: 835 ECTDVPSSESGDKAVSRRSNSVLHRQMTRLPGIS 868
>gi|290999114|ref|XP_002682125.1| predicted protein [Naegleria gruberi]
gi|284095751|gb|EFC49381.1| predicted protein [Naegleria gruberi]
Length = 626
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 162/324 (50%), Gaps = 61/324 (18%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYG-ESVEEQAYLSDL 63
D S+ L L P+ VI Y D++ IR++E YQC + + V+ + Y SVE + Y + +
Sbjct: 307 DTSTILDDLMPSFVILYENDLSFIRRIEHYQCKYPYIPLHVYLLSYDRNSVEYKQYQATV 366
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGR--VIVDMREFRSELPVLLHKRGLY 121
REK+AF+ LI S GR +++D REFRS LP LL+ G
Sbjct: 367 EREKEAFKKLIV--------------------SYGRLTIVIDAREFRSTLPSLLNSSGYK 406
Query: 122 IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ P+ ISVGDYI+S CVERKS +DL SL SGRL+ Q ++M ++Y +LLI+F+ ++
Sbjct: 407 VIPIQISVGDYIVSKHCCVERKSTTDLWQSLNSGRLFQQSEKMIKYYKHAVLLIQFEQDE 466
Query: 182 PFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPK 241
F L Y +Y D + I KL L LHFPK
Sbjct: 467 AFVLPDPY-----------------------SGFYSYEDGKIEEKSIMTKLVLTALHFPK 503
Query: 242 LRLIWSSGPYNTAQLFFELK----QGRD----------EPSAEVASSIGQTPNEDYTDRY 287
L++ +S P T + F+ +K Q D EP +A +IG + + + +
Sbjct: 504 LKIAYSRTPAATGKFFYMMKHQVLQYNDYDMEENEEDYEPDVSLAQAIGTSEHVEENESS 563
Query: 288 NAAIEDFISKLPGMAEWSRARTLN 311
N AIE F+++LPG+ + R +N
Sbjct: 564 NQAIE-FLARLPGVTVENMPRIIN 586
>gi|312066114|ref|XP_003136116.1| ERCC4 domain-containing protein [Loa loa]
gi|307768728|gb|EFO27962.1| ERCC4 domain-containing protein [Loa loa]
Length = 844
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 163/299 (54%), Gaps = 52/299 (17%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+L +L + +P VI Y++D+ ++R +E+Y+ S+ ++ ++ + Y S EE+ YL LR
Sbjct: 567 NLIRQLETFEPRIVILYHSDMISLRLLEMYRACHSDKQLTIYVIMYANSNEEERYLCSLR 626
Query: 65 REKKAFEYLIQEK----------TNMAVP--------TEQDGVSTEPEESCGRVIVDMRE 106
+E+ AFE +++E+ T+ P T G T+ E +VIVDMRE
Sbjct: 627 KEQVAFEEMVREQGTLMSAREYETDREEPHRLILMRSTRDAGGRTDQNEGNPKVIVDMRE 686
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F+SELP +L+KRG+ + P TI VGDYILSP+I VERK++ DL SL SGR++ Q++QM R
Sbjct: 687 FQSELPTVLYKRGVDLMPATIEVGDYILSPNIAVERKALDDLTQSLHSGRIFKQIEQMLR 746
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNK----PFELQGNYYLSRDIA 222
HY +LLIE + ++ D+ K PF QG +++
Sbjct: 747 HYKNVILLIEAN----------------------VKDDYKKVNGGPF--QG------ELS 776
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
+ + + +L +P + +IW+ P +++++F ELK EP+ A +I +E
Sbjct: 777 RRCRETRSLFTILVRTYPDMNVIWTLDPAHSSEMFEELKLNEPEPNLLQALAIKSDLDE 835
>gi|170592186|ref|XP_001900850.1| ERCC4 domain containing protein [Brugia malayi]
gi|158591717|gb|EDP30321.1| ERCC4 domain containing protein [Brugia malayi]
Length = 923
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 176/341 (51%), Gaps = 66/341 (19%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+L +L + +P VI Y++D+ ++R +E+Y+ S + + ++ + YG S EE+ YL LR
Sbjct: 567 NLIKQLETFEPQIVILYHSDMVSLRLLEMYKACHSHIPLIIYIVMYGNSNEEERYLCSLR 626
Query: 65 REKKAFEYLIQEKTNMAVPTEQD------------------GVSTEPEESCGRVIVDMRE 106
+E+ AFE +++E+ + E + G E +VIVDMRE
Sbjct: 627 KEQIAFEEMVREQGTLMSAREYETDREESHRLILMRSTRDAGGRANQNEGNPKVIVDMRE 686
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
F+SELP +L+KRG+ + P TI VGDYILSP+I VERK++ DL SL SGR++ Q++QM R
Sbjct: 687 FQSELPTVLYKRGIDLLPATIEVGDYILSPNIAVERKALDDLTQSLHSGRIFKQIEQMLR 746
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNK----PFELQGNYYLSRDIA 222
HY +LLIE + ++ D+ K PF QG +++
Sbjct: 747 HYKNVILLIEAN----------------------VKDDYKKVNGGPF--QG------ELS 776
Query: 223 AKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED 282
+ + + +L +P + +IW+ P +++++F ELK +P A ++ ++ E+
Sbjct: 777 RRCRETRSLFTVLVRAYPAMNVIWTLDPAHSSEMFEELKLNEPDPDLIQALAV-KSDLEE 835
Query: 283 YTD-------------RYNAAIEDFISKLPGMAEWSRARTL 310
TD R N+ + +++LP ++ R +
Sbjct: 836 CTDLPDSESGDKAVSRRLNSVLHRQMTRLPRISSGEVTRLM 876
>gi|302830916|ref|XP_002947024.1| hypothetical protein VOLCADRAFT_103253 [Volvox carteri f.
nagariensis]
gi|300268068|gb|EFJ52250.1| hypothetical protein VOLCADRAFT_103253 [Volvox carteri f.
nagariensis]
Length = 1450
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 107/178 (60%), Gaps = 28/178 (15%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++VD+REF S LP +L+++G + P+T+ VGDY+LSP + VERKS+ DL SL SGRLY
Sbjct: 1223 RLVVDVREFMSSLPAVLYQKGFELLPLTLEVGDYVLSPQLVVERKSLPDLHASLASGRLY 1282
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
QV MCRHY +PLLLIEFD ++ F LQ L DI + +I
Sbjct: 1283 NQVAAMCRHYPRPLLLIEFDADRQFGLQSPSELGDDIDPRNVI----------------- 1325
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+KL LLTLHFPKLRL+WS P+ TA LF LK +DEP A+ +G
Sbjct: 1326 -----------SKLTLLTLHFPKLRLLWSRSPHATADLFAVLKSNQDEPDPAAAALVG 1372
>gi|396081877|gb|AFN83491.1| Rad1-like DNA repair protein [Encephalitozoon romaleae SJ-2008]
Length = 768
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 153/296 (51%), Gaps = 54/296 (18%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
+VIF + ++R++E Y S VKVFF+ + ES+EEQ YLS++RREK +FE LI+E
Sbjct: 462 NVIFVESGQGSVRKIERYGTMHS---VKVFFLMHSESLEEQRYLSEIRREKASFEKLIEE 518
Query: 77 KTNMAVPTEQDGVS-------TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISV 129
KT + P D V EP ++ V++D RE R+ELP L K G I T+++
Sbjct: 519 KTRL--PLRLDDVEEVIDLEENEPLDNAYGVVIDSRELRAELPFFLFKAGNKICVSTLAI 576
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDY++SP IC+ERKSI D SL +GRLY Q MC Y P+LL+EFD G
Sbjct: 577 GDYLISPTICIERKSIPDFTSSLGTGRLYLQASMMCHRYPSPILLLEFD--------GRP 628
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
LS DH Y +D S I AKL LL +F LR+IWS
Sbjct: 629 CLS-----------DH---------YRYDQDTFKNS--IAAKLALLLFNFGTLRIIWSES 666
Query: 250 PYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWS 305
+A++ +L++ + PS S + + + + + +PG+ +++
Sbjct: 667 RLFSAKVIRDLQKKEEVPSISEGS------------KMDPVLREILLSIPGITQFN 710
>gi|308509188|ref|XP_003116777.1| hypothetical protein CRE_02255 [Caenorhabditis remanei]
gi|308241691|gb|EFO85643.1| hypothetical protein CRE_02255 [Caenorhabditis remanei]
Length = 383
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 151/294 (51%), Gaps = 54/294 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L KP++++ Y + +RQ+E+Y+ + ++ V+++QY ES EE YL + RE +
Sbjct: 18 LEQKKPSAIVLYTMSLQTLRQIEIYRSTHPDRQLHVYWLQYTESTEESRYLESINRETLS 77
Query: 70 FEYLIQEKTNMAVPTE----------------------------QDGVSTEPEESCGRVI 101
FE LI+E+ + + E +D + ++ + ++I
Sbjct: 78 FEMLIREQGTLMISREFNVDREEAPRLKTSTRDGRGLVRREVDPRDQIESDADSERPKII 137
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL SLQSGR++ Q+
Sbjct: 138 VDMREFNSELPTVLYTKGYDVVATTIEIGDYILSPNIAIERKALDDLTQSLQSGRVFKQI 197
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
+QM HY +LLIE N+ FE + + PF QG ++
Sbjct: 198 EQMLEHYDCTVLLIE--SNRKFETK----------------IVNGGPF--QG------EL 231
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
+ +I + L PK+R +W++ P N+A+ F ELK EP + A S+
Sbjct: 232 SRHCREIRSLFCSLIRTNPKMRCVWTTSPTNSAEFFSELKLSAPEPDVDRAISL 285
>gi|298704917|emb|CBJ28420.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1135
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 122/209 (58%), Gaps = 37/209 (17%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQ--SEVKVKVFFMQYGESVEEQAYLSDLRREK 67
L+ L+P V+ Y+ D A +R +E YQ + + V+FM Y +SVEEQ YL+ L RE
Sbjct: 781 LQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQRYLTSLDRET 840
Query: 68 KAFEYLIQEKTNMAVP------------TEQDGVSTE----------------------- 92
KAF+ LI+EK M VP T ++G T
Sbjct: 841 KAFKSLIEEKARMTVPVRTTTSFLPAERTAREGKVTRLSTPLAEAGKGSSSGSSRKGGRR 900
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
++ RV+VD+REFRS LP LLH++G + P+ I+VGDY+L+P ICVERKS+SDL S+
Sbjct: 901 KAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSM 960
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
SGRLY QV+ M +HY P+LLIEF+ +K
Sbjct: 961 SSGRLYNQVEAMLKHYKVPVLLIEFNPDK 989
>gi|17532461|ref|NP_496498.1| Protein C47D12.8 [Caenorhabditis elegans]
gi|6782250|emb|CAA93766.2| Protein C47D12.8 [Caenorhabditis elegans]
Length = 935
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 55/295 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + KP +++ Y + +RQ+E+Y+ + V+++QY ES EE YL + RE +
Sbjct: 569 LETKKPRAIVLYTMSLQTLRQIEIYRSTNPNRSLHVYWLQYTESTEESRYLESINRETMS 628
Query: 70 FEYLIQEKTNMAVPTE----------------------QDGV-----STEPEESCGR--V 100
FE LI+E+ + + E +DG +PEE R +
Sbjct: 629 FELLIREQGTLLISREFNVDREDAPRLKISTRDGGGARRDGAVDPRDQMDPEEELERPKI 688
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
IVDMREF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL SLQSGR++ Q
Sbjct: 689 IVDMREFNSELPTVLYTKGYNVVATTIEIGDYILSPNIAIERKALDDLTQSLQSGRVFKQ 748
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
++QM HY +LLIE N+ FE + + PF QG +
Sbjct: 749 IEQMLEHYDCTVLLIE--SNRKFETK----------------IVNGGPF--QG------E 782
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
++ +I + L PK+R +W+ P N+A+ F ELK EP + A S+
Sbjct: 783 LSRHCREIRSIFCSLIWANPKMRCVWTISPTNSAEFFSELKLSAPEPDVDRAISL 837
>gi|268532382|ref|XP_002631319.1| Hypothetical protein CBG03141 [Caenorhabditis briggsae]
Length = 927
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 150/290 (51%), Gaps = 54/290 (18%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
KP++++ Y + +RQ+E+Y+ ++ V+++QY ES EE YL + RE +FE L
Sbjct: 568 KPSAMVLYTMSLQTLRQIEIYRSTNPNKQLHVYWLQYTESTEESRYLESINRETLSFEML 627
Query: 74 IQEKTNMAVPTE---------------QDGVST-----------EPEESCGR--VIVDMR 105
I+E+ + + E +DG +P+ R +IVDMR
Sbjct: 628 IREQGTLMISREFNVDREEAPRLKTSTRDGGGIQRRDVDPRDQLDPDTDVERPKIIVDMR 687
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL SLQSGR++ Q++QM
Sbjct: 688 EFNSELPTVLYTKGYDVVATTIEIGDYILSPNIAIERKALDDLTQSLQSGRVFKQIEQML 747
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
HY +LLIE N+ FE + + PF QG +++
Sbjct: 748 EHYDCTILLIE--SNRKFETK----------------IVNGGPF--QG------ELSRHC 781
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
+I + L PK+R +W++ P N+A+ F ELK G EP + A S+
Sbjct: 782 REIRSLFCSLIRSNPKMRCVWTTSPTNSAEFFSELKLGAPEPDVDRAISL 831
>gi|172318|gb|AAA34929.1| RAD1 protein (putative); putative [Saccharomyces cerevisiae]
Length = 972
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 58/270 (21%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQY 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
+++ ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKILKYYAYPTLLIEFDEGQSFSLE---------------------PFSKRRNYK-NKDI 921
Query: 222 AAKSS--------DITAKLQLLTLHFPKLR 243
+ SS +I KL L L F +
Sbjct: 922 SNYSSYIKQVIPGEIQLKLAKLVLRFSHFK 951
>gi|209877923|ref|XP_002140403.1| ERCC4 domain-containing protein [Cryptosporidium muris RN66]
gi|209556009|gb|EEA06054.1| ERCC4 domain-containing protein [Cryptosporidium muris RN66]
Length = 945
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 150/290 (51%), Gaps = 45/290 (15%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCA---QSEVKVKVFFMQYGESVEEQAYLSD 62
S++L+S +P +I + +VA +R++E + + +KV + Y S + +++
Sbjct: 590 FSNQLQSKQPHHIILLDPEVATLREIEFFNASGRLNKSSSLKVTILTYQGSFNHERFINT 649
Query: 63 LRREKKAFEYLIQEKTNMAVP---TEQDGVSTEPEESCG--------------RVIVDMR 105
++ E+ ++E LI+ K + VP +D V S G +V+VD+R
Sbjct: 650 MKVEQGSWEILIRHKRTLVVPLNEISEDDVINHLNYSLGSSRHAGRLQVMHVQKVVVDIR 709
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFRS LP L+ +G+ + PVT++VGDY++S DIC+ERKSI DLI SL SGRLYTQ+Q +
Sbjct: 710 EFRSSLPYQLYCKGIEVIPVTLAVGDYVISRDICIERKSIQDLINSLNSGRLYTQMQWLT 769
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
HY+ P +LIEF H + N R L PF L
Sbjct: 770 THYSIPTILIEFIHGLGYIKWKN----RQSGFSPL-------PFNL-------------- 804
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
+DI KL LL HFP +++IWS +A LK GR+EP A S+
Sbjct: 805 ADIYNKLILLIRHFPNVKIIWSCSASFSASSIAFLKHGREEPDENSAVSL 854
>gi|313233632|emb|CBY09803.1| unnamed protein product [Oikopleura dioica]
Length = 556
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 153/299 (51%), Gaps = 41/299 (13%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK--VFFMQYGESVEEQAYLSDL 63
+ S + ++P V+ Y ++ IR++E + + S+ K K V+ + SV+E ++S
Sbjct: 225 VESLIYDMRPDFVVVYEINLKTIREIEHAKASLSKSKCKFAVYTLSTEGSVDEAQFVSIK 284
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIE 123
RE ++FEYLI+EK ++ + V E ++ D REF+SELP +L + L +
Sbjct: 285 HREIRSFEYLIEEKDSIENKLTAE-VDMETYADWPVIVADTREFKSELPGMLFRHQLRLA 343
Query: 124 PVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
P I VGDYILSP+I VERK++ D IGS+ +GRLYTQ+ +MCRHY +P+LL+EF+ +P
Sbjct: 344 PSMIEVGDYILSPEIAVERKALMDFIGSINNGRLYTQLTKMCRHYKRPMLLLEFEEREP- 402
Query: 184 ELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLR 243
F +G +R S KL L ++F +R
Sbjct: 403 -------------------------FTFKG----ARVKTFSMSSALDKLVLTLINFKTVR 433
Query: 244 LIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMA 302
L+WS +TA +F ELK+ D P+ + + + YN D LPG+
Sbjct: 434 LLWSRSANHTAIIFNELKKDTDNPAV--------LSDNELSILYNTQQVDAALTLPGIT 484
>gi|238568541|ref|XP_002386442.1| hypothetical protein MPER_15289 [Moniliophthora perniciosa FA553]
gi|215438478|gb|EEB87372.1| hypothetical protein MPER_15289 [Moniliophthora perniciosa FA553]
Length = 166
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 18/162 (11%)
Query: 43 VKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQD--------------- 87
V+V+ M Y +S EE YL+ +RREK +FE LI+E+ +M +P +D
Sbjct: 3 VRVYHMVYSDSCEEHKYLAGIRREKDSFERLIKERGSMLLPILEDRRSADNDAIIKTIST 62
Query: 88 ---GVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKS 144
G E + +VIVDMREFRS LP LLH L + P T++VGDYIL+P+ICVERKS
Sbjct: 63 RVAGGRRELSTTPSQVIVDMREFRSTLPSLLHASNLLVIPATLTVGDYILTPEICVERKS 122
Query: 145 ISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQ 186
+SDL+ S SGRLYTQ + M HY P+LLIEF+ +K F L+
Sbjct: 123 LSDLVSSFNSGRLYTQCELMSAHYKNPVLLIEFEEDKSFSLE 164
>gi|154280641|ref|XP_001541133.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411312|gb|EDN06700.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 876
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 105/179 (58%), Gaps = 19/179 (10%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD+REFRS LP LH R + + P ++VGDYIL+PDICVERKSI DL SL++GRLY
Sbjct: 616 VVVDVREFRSALPCFLHGRSMIVVPCQLTVGDYILTPDICVERKSIRDLFSSLRNGRLYN 675
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q + M +HY P+LLIEFD NK F G+ LS
Sbjct: 676 QAETMLQHYKTPVLLIEFDQNKSFTFDA-----------------FTSATNTHGSESLSS 718
Query: 220 DIAAKSSDITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
++ ++ + + L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 719 NLINPTNPKSVQHLLTLLTLAFPRLKIIWSSAPYQTAEIFEELKKNNPEPDPIRAVQIG 777
>gi|428671940|gb|EKX72855.1| conserved hypothetical protein [Babesia equi]
Length = 1091
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 41/290 (14%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQC----AQSEVKVKVFFMQYGESVEEQAYL 60
DL + +KPT +I + + R +E Y A+ ++V + Y + +E +
Sbjct: 748 DLIYLFQDIKPTLIIVFTPNTHIFRVIEQYCALNFYAKKRNYLRVHVLSYKDCLETHRFK 807
Query: 61 SDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGL 120
DL+ E +++ L +EK V ++ ++ G+ ++DMRE RS+LP L+ G+
Sbjct: 808 KDLKTELESWGQLQKEKETSVVQLDESVLTRGISVVNGQALIDMRELRSKLPFHLYSNGI 867
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHN 180
+ P+ + +GDY+L+PDICVERK + DLI S +GRL QV +MC Y P LLIEF+++
Sbjct: 868 QLFPICLDIGDYVLTPDICVERKKLEDLIMSFNNGRLAKQVGEMCSAYEFPFLLIEFENS 927
Query: 181 KPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFP 240
+ F H F + L+ + KL +L +FP
Sbjct: 928 ETF---------------------HFPSFTTENKSGLNF--------LYTKLIILCCNFP 958
Query: 241 KLRLIWSSGPYNTAQLFFELKQGRDEPSA--------EVASSIGQTPNED 282
KLRLIW + P ++A +F LK+GR EP A + SI PNE+
Sbjct: 959 KLRLIWGASPGDSANVFIALKKGRGEPDAISNNIQIKDARKSIADKPNEE 1008
>gi|401827326|ref|XP_003887755.1| ERCC4-type nuclease [Encephalitozoon hellem ATCC 50504]
gi|392998762|gb|AFM98774.1| ERCC4-type nuclease [Encephalitozoon hellem ATCC 50504]
Length = 733
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 149/294 (50%), Gaps = 50/294 (17%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
S IF + ++R++E Y VKVFF+ + ES+EEQ YLS++RREK +FE LI+E
Sbjct: 427 SAIFVESGQDSVRKIERYGVVHP---VKVFFLMHSESLEEQRYLSEIRREKTSFEKLIEE 483
Query: 77 KTNMAVPTE--QDGVSTEPEESCG---RVIVDMREFRSELPVLLHKRGLYIEPVTISVGD 131
+ + + + +D + E ES V++D RE R+ELP L K I T+ +GD
Sbjct: 484 RARLPLRLDDAEDVIDLEENESGDGAYTVVIDSRELRAELPFFLFKARNKICISTLPIGD 543
Query: 132 YILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYL 191
Y++SP +C+ERKSI D SL +GRLY Q MC Y P+LL+EFD G L
Sbjct: 544 YLISPTVCIERKSIPDFTSSLNTGRLYLQASMMCYRYPNPILLLEFD--------GRPCL 595
Query: 192 SRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPY 251
S DH Y +D S I AKL LL +F LR+IWS
Sbjct: 596 S-----------DH---------YRYDQDTFKNS--IAAKLALLLFNFGTLRIIWSESRL 633
Query: 252 NTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWS 305
+A++ +L++ D PS S + + + + + +PG+ +++
Sbjct: 634 FSAKVIRDLQKKEDMPSISEGS------------KMDPVLREILLSIPGITQFN 675
>gi|384484588|gb|EIE76768.1| hypothetical protein RO3G_01472 [Rhizopus delemar RA 99-880]
Length = 855
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 149/317 (47%), Gaps = 87/317 (27%)
Query: 2 FAQDLSSK-LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYL 60
+ DL + L +P +I Y+ A +RQVEVY+ V+++V+FM Y SVEEQ YL
Sbjct: 507 YEDDLHEQILEDTQPRFIIMYDPSPAFVRQVEVYRAKHPTVQIRVYFMLYENSVEEQNYL 566
Query: 61 SDLRREKKAFEYLIQEKTNMAVP----------------TEQDGVSTEPEESCGRVIVDM 104
S +++EK++FE LI EK+ MA+P T G T+ + VDM
Sbjct: 567 SLIKKEKESFEKLIHEKSVMAIPLPEKRKEREFEVIRPSTRVAGGQTKVSTGPPVITVDM 626
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
REFR+ LP P+ LYTQ + M
Sbjct: 627 REFRNVLP-----------PI-------------------------------LYTQCESM 644
Query: 165 CRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224
+Y P+LLIEFD + K F LQG L +I +
Sbjct: 645 SLYYKIPILLIEFDQS--------------------------KSFTLQGVSDLRDNI--R 676
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT 284
DIT+KL +LTL FPKLR+IWSS P+ TA +F +LK+ +EP++E A+SIG E
Sbjct: 677 LQDITSKLVVLTLTFPKLRIIWSSSPHETASIFEDLKKTEEEPNSEKAASIGAEEGESGE 736
Query: 285 DRYNAAIEDFISKLPGM 301
+N +D + +PG+
Sbjct: 737 TIHNMTPQDVLRSMPGI 753
>gi|440301255|gb|ELP93670.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Entamoeba
invadens IP1]
Length = 903
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 165/340 (48%), Gaps = 47/340 (13%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+L+ LR KP +++ YN + R VE Y Q E V+ + + Y S E Y +R
Sbjct: 595 ELNHVLRWEKPRALVLYNCSLWVTRVVETYALRQEE-DVRCYMLTYSGSYESLKYQQSIR 653
Query: 65 REKKAFEYLIQEKTNMA--VPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYI 122
REKKAFE LI+++ P E V + +IVD+REFR ELP L K G +
Sbjct: 654 REKKAFEDLIKKEVEHKNDKPVE---VVANVKNRTKAIIVDIREFRCELPFQLFKSGFKL 710
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKP 182
P I +GDYILSP+I VERKS DL+GSL+S R+ Q+Q M R Y +LLIE +++
Sbjct: 711 IPKQIEIGDYILSPNIVVERKSAIDLVGSLKSKRVNKQIQNMSRKYETIVLLIECYNSEN 770
Query: 183 FELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKL 242
F+ E+D +K + I IT LT FP++
Sbjct: 771 FD-----------------EYDVSKT---------EQTIRMYIPQITE----LTTEFPRV 800
Query: 243 RLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGM- 301
+++W+ P TA +F LK+ EP+ E I + E+ +NA + + +LPG+
Sbjct: 801 KIVWTYSPQMTANIFDTLKKNEREPTEEDCKFIDE---ENEQINWNAL--EVVKRLPGIP 855
Query: 302 --AEWSRARTLNLEV---LGLNPGQGGNFLTELFRASSFF 336
+ T NL + + +N Q L + +AS F
Sbjct: 856 IDKVYDLQNTPNLSISRMMAMNETQLSEILGDKEKASQFL 895
>gi|341881136|gb|EGT37071.1| hypothetical protein CAEBREN_11761 [Caenorhabditis brenneri]
Length = 354
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 54/279 (19%)
Query: 25 VAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPT 84
+ +RQ+E+Y+ + ++ V+++QY ES EE YL + RE +FE LI+E+ + +
Sbjct: 3 LQTLRQIEIYRSTNPDRQLHVYWLQYTESTEESRYLESINRETLSFEMLIREQGTLMISR 62
Query: 85 E---------------QDGVST-----------EPEESCGR--VIVDMREFRSELPVLLH 116
E +DG EP+E R +IVDMREF SELP +L+
Sbjct: 63 EFNVDREEPPRLKTSTRDGGGILRRDVDPRDQIEPDEDMDRPKIIVDMREFNSELPTVLY 122
Query: 117 KRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+G + TI +GDYILSP+I +ERK++ DL SLQSGR++ Q++QM HY +LLIE
Sbjct: 123 TKGYDVVATTIEIGDYILSPNIAIERKALDDLTQSLQSGRVFKQIEQMLEHYDCTVLLIE 182
Query: 177 FDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLT 236
+ KF + + PF QG +++ +I + L
Sbjct: 183 SNR------------------KFETKIVNGGPF--QG------ELSRHCREIRSLFCSLI 216
Query: 237 LHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI 275
PK+R +W+ P N+A+ F ELK EP + A S+
Sbjct: 217 HANPKMRCVWTISPTNSAEFFSELKLSAPEPDVDRAISL 255
>gi|403332158|gb|EJY65073.1| DNA repair endonuclease XPF, putative [Oxytricha trifallax]
Length = 1073
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 171/350 (48%), Gaps = 79/350 (22%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV--------KVKVFFMQYGESVEE 56
D LR+L P V+ Y + +R +E+Y + + +++V FM + ES E
Sbjct: 692 DFELALRNLDPKIVVLYEPQLEFMRAIEIYNAERVKFHEDPDSLDQIEVNFMIFEESAEY 751
Query: 57 QAYLSDLRREKKAFEYLIQEKTNMAV-----PTEQDGVSTEPEESCGR------------ 99
Y++++ EKK F+ L+ K + + E + E + G
Sbjct: 752 YQYMNNVEVEKKGFQKLMDIKPKLYIELKDFKLENEVKLLEKRDRMGNDRKGGYKALTDQ 811
Query: 100 ---------VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSI--SDL 148
+ VD REF S P+ L+++G ++ P+ ++VGDY++S +IC+ERK++ DL
Sbjct: 812 NISEIDRDIIAVDSREFSSTTPIYLYEKGFWLIPLVMTVGDYVISDEICIERKAVKTGDL 871
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKP 208
S +SGRL Q+ M R Y KP+LLIEF+ + PF+L +++ FD
Sbjct: 872 FESFKSGRLLNQITNMARFYKKPMLLIEFEESIPFKL-----TDKNV-------FDSTAG 919
Query: 209 FELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQG----R 264
E+ ++I +K+ LLTLHFP L+++WS GP +TA +F ELK+ +
Sbjct: 920 GEVN------------PANIISKISLLTLHFPTLQILWSKGPQHTADIFKELKRTQTGLQ 967
Query: 265 DEPSAEVASSIGQT------------PNEDYTDRYNAAI-EDFISKLPGM 301
+P + + IG+ NED D +N + +F+ KLPG+
Sbjct: 968 KDPDLQKIARIGKVGDLSGDADLLEENNED--DEFNRFMPTEFLKKLPGI 1015
>gi|303390268|ref|XP_003073365.1| Rad1-like DNA repair protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302511|gb|ADM12005.1| Rad1-like DNA repair protein [Encephalitozoon intestinalis ATCC
50506]
Length = 735
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 139/257 (54%), Gaps = 37/257 (14%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
+VIF + ++R++E Y+ VKVFF+ + S+EEQ YL+++RREK +FE LI+E
Sbjct: 430 NVIFVESGQDSVRKIERYRVMHP---VKVFFLMHSSSLEEQRYLNEIRREKTSFEKLIEE 486
Query: 77 KTNMAVPTE-QDGVSTEPEESCGR---VIVDMREFRSELPVLLHKRGLYIEPVTISVGDY 132
++ + + + +D + E ES + V+VD RE R+ELP L + I T+ GDY
Sbjct: 487 RSRLPLQLDGEDVIDLEEHESGEKDYTVVVDSRELRAELPFFLFRARNKICISTLPTGDY 546
Query: 133 ILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLS 192
++ P IC+ERKSISD I SL +GRLY+Q+ +C Y P+LL+EFD G LS
Sbjct: 547 LIGPTICIERKSISDFISSLGTGRLYSQMSMLCHRYPSPVLLLEFD--------GRPCLS 598
Query: 193 RDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYN 252
DH Y +D S I AK LL +F LR+IWS
Sbjct: 599 -----------DH---------YRYDQDTFKNS--IAAKFALLLFNFGMLRVIWSESRLF 636
Query: 253 TAQLFFELKQGRDEPSA 269
+ ++ +L++ D PS
Sbjct: 637 STKVIRDLQRKEDVPSV 653
>gi|156083873|ref|XP_001609420.1| DNA repair endonuclease [Babesia bovis T2Bo]
gi|154796671|gb|EDO05852.1| DNA repair endonuclease, putative [Babesia bovis]
Length = 1168
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 77/311 (24%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK-----VKVFFMQYGESVEEQAYLSDLR 64
LR KPT + Y +V R +E Y CA +KV+ M Y + +E + DL+
Sbjct: 794 LRKFKPTVIAVYRPNVKVFRVIEQY-CALHSASGGKRFLKVYIMSYVDCLESHKFARDLK 852
Query: 65 REKKAFEYLIQE----------------KTNMAVPTEQDGVSTEPEESCG---------- 98
E + + L Q+ ++NM +Q +T E+ G
Sbjct: 853 HELECWRTLQQQLKSLQITYDETVLLTNRSNMG--NQQSLTNTAALEAPGTLAIASDANV 910
Query: 99 --------------RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKS 144
+VI+DMREF+S+LP L+ GL + P+ + +GDY+L+ DICVERKS
Sbjct: 911 KLPNVNIQNVRLTPQVIIDMREFKSKLPFHLYYNGLQLVPIVLEMGDYLLTRDICVERKS 970
Query: 145 ISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFD 204
+ DLI SL SGRL Q +++C Y PLLL+EFD + F L
Sbjct: 971 LKDLITSLTSGRLAQQAEELCSVYDLPLLLVEFDDAESFHLSPC---------------- 1014
Query: 205 HNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR 264
N L NY + +KL +L ++PKL++IWS P +A +F LK+GR
Sbjct: 1015 -NDAHSLGINY------------VYSKLCILCCNYPKLKVIWSQSPEKSAHIFMTLKKGR 1061
Query: 265 DEPSAEVASSI 275
EP + +++
Sbjct: 1062 SEPDISINTAV 1072
>gi|392512811|emb|CAD26381.2| BELONGS TO THE XPF/ERCC4/RAD1 FAMILY [Encephalitozoon cuniculi
GB-M1]
Length = 733
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 151/300 (50%), Gaps = 54/300 (18%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
+VIF + ++R++E Y A S VKVFF+ + S+EEQ YL+++RREK +FE LI+E
Sbjct: 427 NVIFVESGQDSVRKIERYGVAHS---VKVFFLMHTGSLEEQRYLNEIRREKASFEKLIEE 483
Query: 77 KTNMAVPTEQDGVST-------EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISV 129
++ + P D V EP E V+VD RE R+ELP L + I T+ V
Sbjct: 484 RSRL--PLRLDDVDDAIDLEEYEPAEREYVVVVDSRELRAELPFFLFRARNRICISTLPV 541
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDY++SP C+ERKSI DL+ SL SGRLY Q +C Y +P+LL+EFD G
Sbjct: 542 GDYLVSPTTCIERKSIPDLVSSLNSGRLYLQASMLCHRYPRPVLLLEFD--------GRP 593
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
LS +YY K+S + AKL LL + LRLIWS
Sbjct: 594 CLS---------------------DYYRYDQDTFKNS-LVAKLSLLLFNLGALRLIWSES 631
Query: 250 PYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRART 309
+ ++ +L++ D SA + + + + + +PG+ +++ +R
Sbjct: 632 RLFSTKIIRDLQRKEDVSSAVEGH------------KMDPVLHEILLSIPGITQFNISRV 679
>gi|19173402|ref|NP_597205.1| BELONGS TO THE XPF/ERCC4/RAD1 FAMILY [Encephalitozoon cuniculi
GB-M1]
Length = 768
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 137/260 (52%), Gaps = 42/260 (16%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
+VIF + ++R++E Y A S VKVFF+ + S+EEQ YL+++RREK +FE LI+E
Sbjct: 462 NVIFVESGQDSVRKIERYGVAHS---VKVFFLMHTGSLEEQRYLNEIRREKASFEKLIEE 518
Query: 77 KTNMAVPTEQDGVST-------EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISV 129
++ + P D V EP E V+VD RE R+ELP L + I T+ V
Sbjct: 519 RSRL--PLRLDDVDDAIDLEEYEPAEREYVVVVDSRELRAELPFFLFRARNRICISTLPV 576
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDY++SP C+ERKSI DL+ SL SGRLY Q +C Y +P+LL+EFD G
Sbjct: 577 GDYLVSPTTCIERKSIPDLVSSLNSGRLYLQASMLCHRYPRPVLLLEFD--------GRP 628
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
LS +YY K+S + AKL LL + LRLIWS
Sbjct: 629 CLS---------------------DYYRYDQDTFKNS-LVAKLSLLLFNLGALRLIWSES 666
Query: 250 PYNTAQLFFELKQGRDEPSA 269
+ ++ +L++ D SA
Sbjct: 667 RLFSTKIIRDLQRKEDVSSA 686
>gi|449328745|gb|AGE95021.1| XPF/ERCC4/rad1 family protein [Encephalitozoon cuniculi]
Length = 768
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 137/260 (52%), Gaps = 42/260 (16%)
Query: 17 SVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76
+VIF + ++R++E Y A S VKVFF+ + S+EEQ YL+++RREK +FE LI+E
Sbjct: 462 NVIFVESGQDSVRKIERYGVAHS---VKVFFLMHTGSLEEQRYLNEIRREKASFEKLIEE 518
Query: 77 KTNMAVPTEQDGVST-------EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISV 129
++ + P D V EP E V+VD RE R+ELP L + I T+ V
Sbjct: 519 RSRL--PLRLDDVDDAIDLEEYEPAEREYVVVVDSRELRAELPFFLFRARNRICISTLPV 576
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
GDY++SP C+ERKSI DL+ SL SGRLY Q +C Y +P+LL+EFD G
Sbjct: 577 GDYLVSPTTCIERKSIPDLVSSLNSGRLYLQASMLCHRYPRPVLLLEFD--------GRP 628
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
LS +YY K+S + AKL LL + LRLIWS
Sbjct: 629 CLS---------------------DYYRYDQDTFKNS-LVAKLSLLLFNLGALRLIWSES 666
Query: 250 PYNTAQLFFELKQGRDEPSA 269
+ ++ +L++ D SA
Sbjct: 667 RLFSTKIIRDLQRKEDVSSA 686
>gi|401881707|gb|EJT45997.1| hypothetical protein A1Q1_05543 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697761|gb|EKD01014.1| hypothetical protein A1Q2_04701 [Trichosporon asahii var. asahii
CBS 8904]
Length = 995
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 50/309 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ L+P V+ Y ++A IR++E M Y S EE +L+ + RE +A
Sbjct: 669 LQELRPRFVVMYEPNLAFIRRLE---------------MTYTNSFEEDRFLATVAREAEA 713
Query: 70 FEYLIQEKTNMAVP---TEQDGVSTEP----------EESCGRVIVDMREFRSELPVLLH 116
F+ LI+++ M +P + T+P + G +F + LP L+
Sbjct: 714 FKKLIEDRGGMVIPIFNNDPRAPMTDPISRKTTTYSSRNAGGGDGAPAPQFGALLPSLID 773
Query: 117 KRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
G+ + P T++VGDYIL+P +CVERK++ DL SL +GRL+TQ + M HY +LLIE
Sbjct: 774 AAGIKVVPATLTVGDYILTPKMCVERKALPDLEQSLANGRLHTQCEAMTAHYETCILLIE 833
Query: 177 FDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLT 236
F+ +K F ++ R+ A + E + +YL AKL LL
Sbjct: 834 FEEDK-FGIRTQEDARREAAGR------GGDVDEWKDTFYLQ-----------AKLTLLA 875
Query: 237 LHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT----PNEDYTDRYNAAIE 292
LHFP+LR+IWSS P+ + ++ +LK DEP + A G + P+ NA
Sbjct: 876 LHFPRLRIIWSSSPHESVKILSDLKLNHDEPDEDTAMKKGLSSADGPDSLQPHVENAVAV 935
Query: 293 DFISKLPGM 301
+ + +PG+
Sbjct: 936 EMLRAIPGV 944
>gi|313245651|emb|CBY40319.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 116/184 (63%), Gaps = 3/184 (1%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVK--VFFMQYGESVEEQAYLSDL 63
+ S + ++P V+ Y ++ IR++E + + S+ K K V+ + SV+E ++S
Sbjct: 225 VESLIYDMRPDFVVVYEINLKTIREIEHAKASLSKSKCKFAVYTLSTEGSVDEAQFVSIK 284
Query: 64 RREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIE 123
RE ++FEYLI+EK ++ + V E ++ D REF+SELP +L + L +
Sbjct: 285 HREIRSFEYLIEEKDSIENKLTAE-VDMETYADWPVIVADTREFKSELPGMLFRHQLRLA 343
Query: 124 PVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
P I VGDYILSP+I VERK++ D IGS+ +GRLYTQ+ +MCRHY +P+LL+EF+ +PF
Sbjct: 344 PSMIEVGDYILSPEIAVERKALMDFIGSINNGRLYTQLTKMCRHYKRPMLLLEFEEREPF 403
Query: 184 ELQG 187
+G
Sbjct: 404 TFKG 407
>gi|240273316|gb|EER36837.1| DNA repair protein RAD1 [Ajellomyces capsulatus H143]
Length = 866
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 100/159 (62%), Gaps = 20/159 (12%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D A IR+VEVY+ + ++ +V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 588 LEEVKPRYIIMYEPDAAFIRRVEVYRSSHTDREVRVYFLYYGGSVEEQRYLSAVRREKDA 647
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEE-----------SCGR---------VIVDMREFRS 109
F LI+EK +MA+ D + +P+E GR V+VD+REFRS
Sbjct: 648 FTKLIKEKGSMALTITHDRSAEDPQEQFLRTVNTRIAGGGRLAATAAPPTVVVDVREFRS 707
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDL 148
LP LH R + + P ++VGDYIL+PDICVERKSI DL
Sbjct: 708 ALPCFLHGRSMIVVPCQLTVGDYILTPDICVERKSIRDL 746
>gi|407038809|gb|EKE39319.1| DNA repair endonuclease, putative [Entamoeba nuttalli P19]
Length = 882
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 38/300 (12%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+++++L KP ++I YN + R +E Y ++ E ++K++ + Y +S E Y +
Sbjct: 571 EMNNELFWDKPKAIILYNCSLWVTRVLETYVHSRDE-EIKLYLLFYEKSYEMIKYQQTIL 629
Query: 65 REKKAFEYLIQ-EKTNMAVPTEQDGVSTEP-EESCGRVIVDMREFRSELPVLLHKRGLYI 122
REK AFE L++ E + + +Q + P ++ +IVD+REFR ELP L + +
Sbjct: 630 REKNAFEQLVKTEMKSKELNIDQKEIEVIPIQDRVKTIIVDIREFRCELPFHLFNQNYKL 689
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKP 182
P + +GDYILSP+IC+ERKS DL GSL+S R+ Q+Q M R Y +LLIE ++
Sbjct: 690 IPKQLEIGDYILSPNICIERKSAIDLAGSLKSRRINKQIQNMFRKYNTVVLLIECYSSEG 749
Query: 183 FELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKL 242
FE ++D +K ++ +Y ++I QL+T FP+L
Sbjct: 750 FE-----------------QYDSSKTEQVLKSY----------TNIFT--QLIT-EFPQL 779
Query: 243 RLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMA 302
+++WS P T +F +LKQ EP+ E I N+D +NA + + ++PG+
Sbjct: 780 KIVWSYSPQMTTHIFNDLKQNDSEPTEEDCKMI---ENDDDLTNWNAL--EVLKRMPGIT 834
>gi|67484578|ref|XP_657509.1| DNA repair endonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56474762|gb|EAL52119.1| DNA repair endonuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449702148|gb|EMD42842.1| DNA repair endonuclease xpf, putative [Entamoeba histolytica KU27]
Length = 882
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 38/300 (12%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+++++L KP ++I YN + R +E Y ++ E ++K++ + Y +S E Y +
Sbjct: 571 EMNNELFWDKPKAIILYNCSLWVTRVLETYVHSRDE-EIKLYLLFYEKSYEMIKYQQTIL 629
Query: 65 REKKAFEYLIQ-EKTNMAVPTEQDGVSTEP-EESCGRVIVDMREFRSELPVLLHKRGLYI 122
REK AFE L++ E + + +Q + P ++ +IVD+REFR ELP L + +
Sbjct: 630 REKNAFEQLVKTEMKSKELNIDQKEIEIIPIQDRVKTIIVDIREFRCELPFHLFNQNYKL 689
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKP 182
P + +GDYILSP+IC+ERKS DL GSL+S R+ Q+Q M R Y +LLIE ++
Sbjct: 690 IPKQLEIGDYILSPNICIERKSAIDLAGSLKSRRINKQIQNMFRKYNTVVLLIECYSSEG 749
Query: 183 FELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKL 242
FE ++D +K ++ +Y ++I QL+T FP+L
Sbjct: 750 FE-----------------QYDSSKTEQVLKSY----------TNIFT--QLIT-EFPQL 779
Query: 243 RLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMA 302
+++WS P T +F +LKQ EP+ E I N+D +NA + + ++PG+
Sbjct: 780 KIVWSYSPQMTTHIFNDLKQNDSEPTEEDCKMI---ENDDDLTNWNAL--EVLKRMPGIT 834
>gi|167389195|ref|XP_001738856.1| DNA repair endonuclease xp-f / mei-9 / rad1 [Entamoeba dispar
SAW760]
gi|165897684|gb|EDR24766.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Entamoeba
dispar SAW760]
Length = 882
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 156/300 (52%), Gaps = 38/300 (12%)
Query: 5 DLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64
+++++L KP ++I YN + R +E Y ++ E ++K++ + Y +S E Y +
Sbjct: 571 EMNNELFWDKPKAIILYNCSLWVTRVLETYVHSRDE-EIKLYLLFYEKSYEMIKYQQTIL 629
Query: 65 REKKAFEYLIQ-EKTNMAVPTEQDGVSTEP-EESCGRVIVDMREFRSELPVLLHKRGLYI 122
REK AFE+L++ E + + Q + P ++ +IVD+REFR ELP L + +
Sbjct: 630 REKNAFEHLVKTEMKSKELNINQKEIEVIPIQDRVKTIIVDIREFRCELPFHLFNQNFKL 689
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKP 182
P + +GDYILSP+IC+ERKS DL GSL+S R+ Q+Q M R Y +LLIE ++
Sbjct: 690 IPKQLEIGDYILSPNICIERKSAIDLAGSLKSRRINKQIQNMFRKYNTVVLLIECYSSEG 749
Query: 183 FELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKL 242
FE ++D +K ++ Y T L + FP+L
Sbjct: 750 FE-----------------QYDSSKTEQVLKPY-------------TNIFTQLIIEFPQL 779
Query: 243 RLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMA 302
+++WS P T +F +LKQ EP+ E I ++D T+ +NA + + ++PG+
Sbjct: 780 KIVWSYSPQMTVHIFNDLKQNDSEPTEEDCKMI--ESDDDLTN-WNAL--EVLKRMPGIT 834
>gi|429963301|gb|ELA42845.1| hypothetical protein VICG_00160 [Vittaforma corneae ATCC 50505]
Length = 751
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 143/294 (48%), Gaps = 48/294 (16%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
+I N D+ +IR VE Y + VF +QY +VEEQ +L ++R EK AFE +I+++
Sbjct: 461 IILLNPDLLSIRNVE-YTATKGGAP-SVFILQYKNTVEEQRFLEEIREEKYAFEKIIEDR 518
Query: 78 TNMAVPTEQDGVSTEPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILS 135
+ + D + + R V VD RE RS+LP L++ G I + +GDY+L
Sbjct: 519 ARLPLKVGLDRIDMDDGSPDCRYTVTVDSREMRSKLPFFLYRAGNEINIKVLEIGDYLLG 578
Query: 136 PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
C+ERKSI D +GSL SGRLY Q Q++ Y P+LL+EF+ KP
Sbjct: 579 TTKCIERKSIEDFLGSLNSGRLYQQAQRLTHAYTNPILLLEFNEGKP------------- 625
Query: 196 AAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQ 255
L +FD + F N Y++R L +FP ++IWS+ NT +
Sbjct: 626 ---VLGDFDDVENFR---NSYIAR------------FCLFLYNFPSFQVIWSNSHTNTVR 667
Query: 256 LFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRART 309
+ ++ Q RDE + A D Y+ + + + +PG+ +S R
Sbjct: 668 IIRDM-QKRDEAEQKSA------------DEYDPELIETLLCIPGINSFSLNRV 708
>gi|323350268|gb|EGA84414.1| Rad1p [Saccharomyces cerevisiae VL3]
Length = 897
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 32/193 (16%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQ- 882
Query: 162 QQMCRHYAKPLLL 174
C+ K L +
Sbjct: 883 ---CKKNVKILCI 892
>gi|123505623|ref|XP_001329017.1| ERCC4 domain containing protein [Trichomonas vaginalis G3]
gi|121911967|gb|EAY16794.1| ERCC4 domain containing protein [Trichomonas vaginalis G3]
Length = 723
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 39/265 (14%)
Query: 12 SLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFE 71
+ P VIF++ + ++R++E+Y S+ V + + Y E+ E A + + E + F
Sbjct: 425 TFDPDFVIFWDVTLLSVRRLEIYNTRASK-NVTGYALCYDEANEMTAMETSIENENQIFT 483
Query: 72 YLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGD 131
LI + + ++ + V T E ++VD REFRS +P+ L K G I P I+VGD
Sbjct: 484 KLISKLSTISKTPLEPFVVTNRE-----IVVDDREFRSAMPLALLKAGFKITPSVITVGD 538
Query: 132 YILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYL 191
Y+L+ DI +ERK+ SDL+ SL+SGRL Q+Q+M +Y P+L++EF F
Sbjct: 539 YVLTKDIVIERKAYSDLVQSLKSGRLLQQIQRMHNYYKSPMLMLEFGDVDQF-------- 590
Query: 192 SRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPY 251
N RD K+ + AK+ + FP LR+IW
Sbjct: 591 ----------------------NAISDRD---KNGSVMAKITTIIRVFPNLRIIWGRNAN 625
Query: 252 NTAQLFFELKQGRDEPSAEVASSIG 276
A+ L +G+D+PS E+A +G
Sbjct: 626 ECAKTLLLLSRGKDQPSLEMAQEMG 650
>gi|85000729|ref|XP_955083.1| DNA repair (RAD6) endonuclease [Theileria annulata strain Ankara]
gi|65303229|emb|CAI75607.1| DNA repair (RAD6) endonuclease, putative [Theileria annulata]
Length = 1422
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 128/272 (47%), Gaps = 42/272 (15%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK----------VKVFFMQYGESVE 55
L + L ++ P ++ Y+ +V R +E Y CA + ++V + Y + +E
Sbjct: 866 LMTTLMNVNPCIILIYSPNVHVFRTIENY-CAHKFARGDLRRKKMNFLQVHVLSYKDCLE 924
Query: 56 EQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLL 115
+ L+ E A+ L EK + ++ G+ G+VIVD RE +LP L
Sbjct: 925 THRFAKCLKSEVDAWASLQTEKKTQVIRLDE-GILLNRASLIGQVIVDSREMHCKLPFYL 983
Query: 116 HKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175
G+ + P + +GDY+++ DIC+ERKSI DL SL + RL Q+ +MC Y P LLI
Sbjct: 984 FNLGINVVPNVLEIGDYLITRDICIERKSIIDLHISLNNARLSKQISEMCSAYNNPFLLI 1043
Query: 176 EFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLL 235
EF+ + F L Y +G Y + I KL +L
Sbjct: 1044 EFEEDDLFHLPSTGYT--------------------KGGY----------NYIYIKLIIL 1073
Query: 236 TLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
+FPKLRLIWSS P ++A + LK R EP
Sbjct: 1074 CCNFPKLRLIWSSSPKHSANIIKYLKANRTEP 1105
>gi|343957931|emb|CBY93675.1| putative rad1 protein [Glomus diaphanum]
Length = 204
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 75/101 (74%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++I+D+REFRS LP LLH+ G+ I P T+++GDYILSP+ICVERKSISDLIGS SGRLY
Sbjct: 38 KIIIDVREFRSSLPSLLHQSGIEILPCTLTIGDYILSPNICVERKSISDLIGSFNSGRLY 97
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKF 199
TQ + M HY +P+LLIEFD N+ F LQ DI K
Sbjct: 98 TQCEAMSIHYKQPILLIEFDRNQSFTLQSINEFRPDIDLKL 138
>gi|403223062|dbj|BAM41193.1| uncharacterized protein TOT_030000456 [Theileria orientalis strain
Shintoku]
Length = 1187
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 125/276 (45%), Gaps = 50/276 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK----------VKVFFMQYGESVE 55
L S L L P VI Y +V R +E Y CA + ++V + + +E
Sbjct: 858 LMSTLLRLNPCIVIIYAPNVHVFRVIENY-CALKFSRPALYRKRLNFLQVHILSLRDCLE 916
Query: 56 EQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLL 115
+ L+ E A+ + +K ++ V ++ + G+ IVD RE S+LP L
Sbjct: 917 THRFTKSLKAELDAWSQVQTQKKSLVVRMDE-ALLVNKRSFVGQTIVDTRELNSKLPFFL 975
Query: 116 HKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175
GL + + +GDY+++ D+C+ERKS+SDL SL S RL Q+ +MC Y P LLI
Sbjct: 976 FNAGLQVISTVLEIGDYLVTRDLCIERKSLSDLYTSLNSARLSKQLSEMCSAYENPFLLI 1035
Query: 176 EFDHNKPFEL----QGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
EFD N F L +G Y G+ Y I K
Sbjct: 1036 EFDENDKFHLSSVGEGRY-----------------------GHNY-----------IYVK 1061
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
L + +FPKLRLIWSS P +A + LK R EP
Sbjct: 1062 LVITCCNFPKLRLIWSSSPQESANIIRHLKINRSEP 1097
>gi|294899843|ref|XP_002776771.1| dna repair endonuclease xp-f / mei-9 / rad1, putative [Perkinsus
marinus ATCC 50983]
gi|239883972|gb|EER08587.1| dna repair endonuclease xp-f / mei-9 / rad1, putative [Perkinsus
marinus ATCC 50983]
Length = 909
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 158/362 (43%), Gaps = 68/362 (18%)
Query: 6 LSSKLRSLKPTSVIFYNA-DVAAIRQVEVYQC---AQSEVKVKVFFMQYGESVEEQAYLS 61
+S++L +P VI Y+A + IR E Y + E V +Q S E +
Sbjct: 534 MSTRLAEFQPNVVILYDAPTILPIRVAERYTSHMKGRGEPLVHTVIIQVMNSHESRRLSQ 593
Query: 62 DLRREKKAFEYLIQEKTNMAVPTEQD--------------------GVSTEPEESCGR-- 99
+E++AF LI + +++ +D G E R
Sbjct: 594 SGVQEQQAFHDLISMEKSVSTSKPKDEWQPLMTPVGGAAAASSSRAGGRKRKREGEMRQT 653
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD+RE RS LP+ LH++GL + P T+ VGD+ILS DIC+ERK++ DLIGSL SGRLY
Sbjct: 654 VLVDVRELRSNLPLELHRKGLTLLPYTLPVGDFILSRDICIERKALPDLIGSLGSGRLYR 713
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q M +Y P LL+E + L ++GN
Sbjct: 714 QAVSMSFNYRAPCLLVEVQETEAGAL-------------------------MKGNSARIS 748
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELK----QGRDEPSAEVASSI 275
D SD ++L L LHFP LRL+WS +TA LF LK Q D A
Sbjct: 749 D-----SDTISRLVALVLHFPSLRLMWSLSDRSTANLFVALKVRAVQQPDPVEAMKKRVE 803
Query: 276 GQTPNEDY--------TDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLT 327
G P++ T+ ++ ED SK A + RT E+L PG + LT
Sbjct: 804 GSVPDDTIEGSTTTAGTESGPSSQEDLASKKARSANPASTRTSASEILLNCPGITPHILT 863
Query: 328 EL 329
L
Sbjct: 864 VL 865
>gi|71027543|ref|XP_763415.1| DNA repair endonuclease [Theileria parva strain Muguga]
gi|68350368|gb|EAN31132.1| DNA repair endonuclease, putative [Theileria parva]
Length = 1380
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 127/272 (46%), Gaps = 42/272 (15%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVK----------VKVFFMQYGESVE 55
L + L ++ P ++ Y+ +V R +E Y CA + ++V + Y + +E
Sbjct: 869 LMTTLLNVNPCIILIYSPNVHVFRTIENY-CAHKFARGDLRRKKMNFLQVHVLSYKDCLE 927
Query: 56 EQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLL 115
+ L+ E A+ L EK + V ++ G+ G+VIVD RE +LP L
Sbjct: 928 THRFAKCLKSEVDAWSSLQNEKKSQVVRLDE-GILLNRASLIGQVIVDTREMHCKLPFYL 986
Query: 116 HKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175
G+ + P + +GDY+++ DIC+ERKS DL SL + RL Q+ +MC Y P LLI
Sbjct: 987 FNLGINVVPNVLEIGDYLITRDICIERKSFMDLQISLNNARLAKQISEMCSAYNNPFLLI 1046
Query: 176 EFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLL 235
EF+ F L + +G Y + I KL +L
Sbjct: 1047 EFEDEDLFHLPSTGFT--------------------KGGY----------NYIYIKLVIL 1076
Query: 236 TLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
+FPKLRLIWSS P ++A + LK R EP
Sbjct: 1077 CCNFPKLRLIWSSSPKHSANIIKYLKANRTEP 1108
>gi|402470703|gb|EJW04814.1| hypothetical protein EDEG_00984 [Edhazardia aedis USNM 41457]
Length = 961
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 34/224 (15%)
Query: 45 VFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIV-D 103
VF + Y +S+EEQ Y +D+R EK FE LI + M + + + + + E+ +I+ D
Sbjct: 704 VFIILYKDSIEEQKYFNDIRNEKYTFEKLITKFLTMPLSKKDNKIVLDEEDRREYIIIID 763
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
RE RS+LP L+K I +I VGDYIL + CVERK+I DLI SL SGRLY Q +
Sbjct: 764 FRESRSKLPYYLYKSQNNISLSSIDVGDYILGINTCVERKAIGDLIQSLNSGRLYLQGKM 823
Query: 164 MCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA 223
M + LLIEF +N+P +YY+ KF
Sbjct: 824 MTYKFKSCYLLIEF-NNRP--CLSDYYVP---TVKF------------------------ 853
Query: 224 KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
++ KL L L+FP +RLIWS+ T+++F +++G + P
Sbjct: 854 ---NLMTKLVLFILNFPNIRLIWSNNEIITSKIFRTIQKGEENP 894
>gi|66357406|ref|XP_625881.1| ERCC4/XP-G-type excision repair nuclease [Cryptosporidium parvum
Iowa II]
gi|46226961|gb|EAK87927.1| ERCC4/XP-G-type excision repair nuclease [Cryptosporidium parvum
Iowa II]
Length = 308
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 108/183 (59%), Gaps = 25/183 (13%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
E ++IVD+REFRS LP L +G+ I P+++ +GDY++S D+C+ERKS+ DL+ SL
Sbjct: 53 ENDIQKIIVDIREFRSSLPYQLFCKGVKIIPMSLEIGDYVISRDVCIERKSLPDLVNSLS 112
Query: 154 SGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQG 213
+GRL+TQ+Q + +HY+ P++LIE + LIE +++ +Q
Sbjct: 113 NGRLFTQLQWISKHYSTPVILIELNS--------------------LIEILNHQG--MQQ 150
Query: 214 NYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
N+ + S DI KL LLT HFP ++ IWS ++ + +K+ R++P+ + AS
Sbjct: 151 NFL---PMKFNSCDIYLKLILLTRHFPNIKFIWSCNSSFSSLVILRIKKDREQPNLKDAS 207
Query: 274 SIG 276
++
Sbjct: 208 TLN 210
>gi|401402883|ref|XP_003881358.1| protein C47D12.8, partially confirmed by transcript evidence, related
[Neospora caninum Liverpool]
gi|325115770|emb|CBZ51325.1| protein C47D12.8, partially confirmed by transcript evidence, related
[Neospora caninum Liverpool]
Length = 1844
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 97/170 (57%), Gaps = 17/170 (10%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VDMRE RS LP L + L + P+T VGDY+L+ +ICVERK+I DL SL SGRLY
Sbjct: 1416 KVVVDMREMRSSLPFELFCKRLRVVPLTFGVGDYVLTREICVERKAIFDLWQSLLSGRLY 1475
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q Q +CR+Y P LLIEF+ +PF L G L P E + L
Sbjct: 1476 QQAQLLCRYYRCPTLLIEFERGRPFALVGYPGL----------------PLEAESLRALG 1519
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS 268
+ A + KL LL LHFP LRLIW+ +A +F LK GR++P+
Sbjct: 1520 -NTAVGCCALLHKLLLLVLHFPSLRLIWAPHSAFSANIFIALKTGREQPN 1568
>gi|68061565|ref|XP_672782.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490131|emb|CAH96098.1| hypothetical protein PB000548.01.0 [Plasmodium berghei]
Length = 388
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 42/219 (19%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+LP L+K ++I P ++ VGDYIL+ DICVERK+I DLI SL + RLY
Sbjct: 76 VIVDIRELKSDLPYKLYKSKMHIIPYSLLVGDYILTKDICVERKTIVDLIQSLNNNRLYN 135
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y+ +LLIEF++ F Y S
Sbjct: 136 QINQMSKYYSIYVLLIEFNNKHLF--------------------------------YFSS 163
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP----SAEVASSI 275
+ K S I KL ++L FP+L+++WS TA+LF+ LK D+P S + ++
Sbjct: 164 -LNNKHS-IYTKLVTISLQFPRLKILWSPFSLFTAKLFWSLKVNADQPDIFKSLHIDITL 221
Query: 276 GQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEV 314
+ +DY Y + I K+ A T NLE+
Sbjct: 222 QKDTQKDYDITYEKSELQIIDKIETQAN----NTQNLEI 256
>gi|341895575|gb|EGT51510.1| hypothetical protein CAEBREN_20719 [Caenorhabditis brenneri]
Length = 305
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 28/186 (15%)
Query: 92 EPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
EP+E R +IVDMREF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL
Sbjct: 47 EPDEDMDRPKIIVDMREFNSELPTVLYTKGYDVVATTIEIGDYILSPNIAIERKALDDLT 106
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF 209
SLQSGR++ Q++QM HY +LLIE + KF + + PF
Sbjct: 107 QSLQSGRVFKQIEQMLEHYDCTVLLIESNR------------------KFETKIVNGGPF 148
Query: 210 ELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSA 269
QG +++ +I + L PK+R +W+ P N+A+ F ELK EP
Sbjct: 149 --QG------ELSRHCREIRSLFCSLIHANPKMRCVWTISPTNSAEFFSELKLSAPEPDV 200
Query: 270 EVASSI 275
+ A S+
Sbjct: 201 DRAISL 206
>gi|159465982|ref|XP_001691188.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279160|gb|EDP04921.1| predicted protein [Chlamydomonas reinhardtii]
Length = 633
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 78/142 (54%), Gaps = 28/142 (19%)
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRD 194
P + VERKS+ DL SL SGRLY Q + MCRHYA+PLLLIEFD ++ F LQ L D
Sbjct: 455 GPQLVVERKSLPDLTASLASGRLYHQAEVMCRHYARPLLLIEFDPDRQFGLQSPAELGDD 514
Query: 195 IAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTA 254
I K +I +KL LLT HFPKLRL+WS P+ TA
Sbjct: 515 IDPK----------------------------NIISKLTLLTTHFPKLRLLWSRSPHATA 546
Query: 255 QLFFELKQGRDEPSAEVASSIG 276
LF LK +D+P A A+ +G
Sbjct: 547 DLFAALKSNQDQPDAAAAALVG 568
>gi|82540489|ref|XP_724558.1| DNA repair endonuclease subunit [Plasmodium yoelii yoelii 17XNL]
gi|23479241|gb|EAA16123.1| DNA repair endonuclease, subunit [Plasmodium yoelii yoelii]
Length = 1484
Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 34/215 (15%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+K ++I P ++ VGDYIL+ DICVERK+I DLI SL + RLY
Sbjct: 1172 VIVDIRELKSDLSYKLYKSKMHIIPYSLLVGDYILTKDICVERKTIIDLIQSLNNNRLYN 1231
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y+ +LLIEF+ F Y+ S + NK
Sbjct: 1232 QINQMSKYYSIYVLLIEFNTKHLF-----YFASLN-----------NK------------ 1263
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
I KL ++L FP+L+++WS TA+LF+ LK D+P + I T
Sbjct: 1264 ------HSIYTKLVTISLQFPRLKILWSPFSLFTAKLFWSLKVNADQPDIFKSLHIDITL 1317
Query: 280 NEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEV 314
+D Y+ E+ +L E T NLE+
Sbjct: 1318 QKDAQKDYDITYEESELQLVDKIETQGNNTQNLEI 1352
>gi|300121211|emb|CBK21592.2| unnamed protein product [Blastocystis hominis]
Length = 432
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 14 KPTSVIFYNADVAAIRQVEVY-----------------QCAQS-----EVKVKVFFMQYG 51
KP VI +A++ IRQ EV +C+ S + + Q
Sbjct: 119 KPNIVIVVDANLVPIRQAEVSDPFSLFFSSSTTKRRDPRCSISISSATKAQSSKTISQSS 178
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSEL 111
+S +DL + F + + + + + + S +IVD REF++ L
Sbjct: 179 KSTRSHDSFADLENKVAFFPLSLSPRPSFSSHFASASSTRQFASSTPSIIVDSREFKASL 238
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P L+ G + P T+++ DY+LS I VERKS DL SL SGRL Q++QM R Y P
Sbjct: 239 PAALYAHGFQLIPATLTICDYVLSQSIGVERKSFPDLANSLASGRLKKQMEQMSRVYQCP 298
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
+LLIE +AK +R + DI A+
Sbjct: 299 VLLIE-------------------SAK-------------------TRGV----RDIKAR 316
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYT--DRYNA 289
L +L FP++R++WS +++ +F LK+G+ EPS E A + P DY RY+
Sbjct: 317 LSVLVRSFPRMRILWSQSDNDSSSMFEMLKRGKKEPSLEQAMIL---PEGDYLVGRRYDV 373
Query: 290 AIEDFISKLPGMA 302
D + PG+
Sbjct: 374 ERVDILLTFPGVT 386
>gi|209945590|gb|ACI97026.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945598|gb|ACI97030.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945544|gb|ACI97003.1| meiotic 9 [Drosophila simulans]
Length = 472
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945560|gb|ACI97011.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945548|gb|ACI97005.1| meiotic 9 [Drosophila melanogaster]
gi|209945554|gb|ACI97008.1| meiotic 9 [Drosophila melanogaster]
gi|209945558|gb|ACI97010.1| meiotic 9 [Drosophila melanogaster]
gi|209945564|gb|ACI97013.1| meiotic 9 [Drosophila melanogaster]
gi|209945566|gb|ACI97014.1| meiotic 9 [Drosophila melanogaster]
gi|209945576|gb|ACI97019.1| meiotic 9 [Drosophila melanogaster]
gi|209945584|gb|ACI97023.1| meiotic 9 [Drosophila melanogaster]
gi|209945592|gb|ACI97027.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945536|gb|ACI96999.1| meiotic 9 [Drosophila simulans]
gi|209945540|gb|ACI97001.1| meiotic 9 [Drosophila simulans]
Length = 472
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945546|gb|ACI97004.1| meiotic 9 [Drosophila simulans]
Length = 471
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 321 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 380
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 381 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 440
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 441 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 471
>gi|209945542|gb|ACI97002.1| meiotic 9 [Drosophila simulans]
Length = 472
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945538|gb|ACI97000.1| meiotic 9 [Drosophila simulans]
Length = 472
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKNYDDEPTDENAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|221482333|gb|EEE20688.1| DNA-repair endonuclease subunit, putative [Toxoplasma gondii GT1]
Length = 419
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 88/161 (54%), Gaps = 17/161 (10%)
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
RS LP L + L + P+T VGDY+L+ +ICVERK+I DL SL SGRLY Q Q +CR
Sbjct: 1 MRSSLPFELFCKRLRVVPLTFGVGDYVLTREICVERKAIFDLWQSLLSGRLYQQAQLLCR 60
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
+Y P LLIEF+ +PF L G L P E + L + A
Sbjct: 61 YYRCPTLLIEFERGRPFSLVGYPGL----------------PLEAESLRALG-NTAVGCC 103
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
+ KL LL LHFP LRLIW+ +A +F LK GR++P
Sbjct: 104 ALLHKLLLLVLHFPSLRLIWAPHSAFSANIFIALKTGREQP 144
>gi|409074913|gb|EKM75301.1| hypothetical protein AGABI1DRAFT_109572 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 477
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 30/179 (16%)
Query: 1 MFAQD-LSSKLRSL---KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEE 56
+F QD L+ R L +P ++ + V IR+VEVY+ + + V+ + M Y S EE
Sbjct: 132 LFTQDDLNPHDRMLAESQPRFIVMFEPSVEFIRRVEVYRSSYPGMAVRAYHMVYANSCEE 191
Query: 57 QAYLSDLRREKKAFEYLIQEKTNMAVPTEQ------DG-----VSTEPEESCG------- 98
YL+ +R+EK++FE+L +E+ +M + E+ DG + T G
Sbjct: 192 HRYLAVIRKEKESFEWLFKERGSMLLTLEERRKPGGDGQAENVIRTISTRLAGERRELTI 251
Query: 99 ---RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
++IVDMREFRS LP LLH L + P T++VGDYI +PDICVERK I ++QS
Sbjct: 252 EPPKIIVDMREFRSALPSLLHATRLLVVPATLTVGDYINTPDICVERK-----ITTIQS 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 213 GNYYLSRDIAA--KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAE 270
G+Y + DI K + I ++L LLT FP+LR+IWS PY TA++F +L +
Sbjct: 286 GDYINTPDICVERKITTIQSELVLLTFSFPRLRIIWSQSPYVTAEIFKDLIK-------- 337
Query: 271 VASSIGQTPNEDYTDRYNAAIEDFISKLP 299
A +IG ++ +N E+ + LP
Sbjct: 338 -AITIGAGGDDPDDVGFNIVAEELVRALP 365
>gi|237842051|ref|XP_002370323.1| DNA-repair endonuclease subunit, putative [Toxoplasma gondii ME49]
gi|211967987|gb|EEB03183.1| DNA-repair endonuclease subunit, putative [Toxoplasma gondii ME49]
gi|221502772|gb|EEE28486.1| DNA-repair endonuclease subunit, putative [Toxoplasma gondii VEG]
Length = 419
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 88/161 (54%), Gaps = 17/161 (10%)
Query: 107 FRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCR 166
RS LP L + L + P+T VGDY+L+ +ICVERK+I DL SL SGRLY Q Q +CR
Sbjct: 1 MRSSLPFELFCKRLRVVPLTFGVGDYVLTREICVERKAIFDLWQSLLSGRLYQQAQLLCR 60
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
+Y P LLIEF+ +PF L G L P E + L + A
Sbjct: 61 YYRCPTLLIEFERGRPFSLVGYPGL----------------PLEAESLRALG-NTAVGCC 103
Query: 227 DITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
+ KL LL LHFP LRLIW+ +A +F LK GR++P
Sbjct: 104 ALLHKLLLLVLHFPSLRLIWAPHSAFSANIFIALKTGREQP 144
>gi|209945586|gb|ACI97024.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|340053814|emb|CCC48108.1| putative DNA repair protein, fragment, partial [Trypanosoma vivax
Y486]
Length = 1159
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D REFRS LP L+ RG+ + P+T++ GDY+LSP+ +ERKS+ DL+ SL SGR++T
Sbjct: 973 VVFDEREFRSRLPYELYCRGIDLVPLTLATGDYVLSPEYAMERKSVPDLVQSLTSGRIHT 1032
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ + R Y P+ LIEFD + PF L S +A +E
Sbjct: 1033 QLAALSRRYEHPMCLIEFDRSTPFRLS-----SALLATGGGWGGARGNTWE--------- 1078
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
+ + A++ L +P++ ++WS P +A L +KQ S + ++ +
Sbjct: 1079 ---SHVCSLFARMARLFASYPRVHVLWSRDPMQSAALVHSMKQTCARASVDPSNPVLTRA 1135
Query: 280 NEDYTD 285
N D D
Sbjct: 1136 NLDVHD 1141
>gi|209945562|gb|ACI97012.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945568|gb|ACI97015.1| meiotic 9 [Drosophila melanogaster]
gi|209945570|gb|ACI97016.1| meiotic 9 [Drosophila melanogaster]
gi|209945572|gb|ACI97017.1| meiotic 9 [Drosophila melanogaster]
gi|209945574|gb|ACI97018.1| meiotic 9 [Drosophila melanogaster]
gi|209945582|gb|ACI97022.1| meiotic 9 [Drosophila melanogaster]
gi|209945594|gb|ACI97028.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945552|gb|ACI97007.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945588|gb|ACI97025.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENVKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|209945550|gb|ACI97006.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|124514084|ref|XP_001350398.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|23615815|emb|CAD52807.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1700
Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 34/188 (18%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+K ++I P ++ VGDYIL+ DICVERKSI DLI SL + RLY
Sbjct: 1348 VIVDIRELKSDLTYKLYKSKMHIIPYSLLVGDYILTKDICVERKSIIDLIQSLNNNRLYN 1407
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y +LLIEF++ F Y+ S L Y
Sbjct: 1408 QINQMSKYYQTYVLLIEFNNKNLF-----YFAS------------------LNDKY---- 1440
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
+ KL ++ + FPKL+++WS T +LF+ LK +P + I T
Sbjct: 1441 -------SVYTKLIMICIQFPKLKILWSPFSLFTVKLFWSLKVNASQPDIFKSLHIDMTL 1493
Query: 280 NEDYTDRY 287
++ + Y
Sbjct: 1494 QKNVREEY 1501
>gi|401416164|ref|XP_003872577.1| putative DNA repair protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488801|emb|CBZ24048.1| putative DNA repair protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1260
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 99/231 (42%), Gaps = 58/231 (25%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV+ D REFRS LP L++RG+ + P+T++ DY+LSP+ VERKS+ D + S+ SGR+
Sbjct: 1035 RVVFDEREFRSSLPYHLYRRGMELIPLTLTTADYVLSPEYAVERKSVQDYLQSVMSGRIQ 1094
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q+ + R YA PL LIEF PF L
Sbjct: 1095 RQLAALARKYAHPLCLIEFHRGIPFRLM-------------------------------- 1122
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR-------------- 264
S I AK L +P++R +W+ P + A + LK+
Sbjct: 1123 ------QSGIYAKTAALMAAYPRVRFVWARSPAHAAGMLVLLKKSVAVANVDPADPLLTG 1176
Query: 265 ---DEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNL 312
D SA + T E T Y A + +SK PG+ + R + L
Sbjct: 1177 TSIDPGSAADVGGVAVTAAERETAHYAARV---LSKFPGITHQNAPRVMQL 1224
>gi|209945534|gb|ACI96998.1| meiotic 9 [Drosophila yakuba]
Length = 472
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V IRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LERMLEQLQPHYVVMYNMNVTVIRQLEVFEARRRLPPAERMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE +I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFELIIDTKSKMVIPKYQDGKTDEAFLLFKNYDDELTDENAKSRQAGGQAPEAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KET-PKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|221057382|ref|XP_002261199.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|194247204|emb|CAQ40604.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1653
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 95/183 (51%), Gaps = 34/183 (18%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+ ++I P ++ VGDYIL+ DICVERKSI DLI SL + RLY
Sbjct: 1248 VIVDIRELKSDLSYKLYTSKMHIIPYSLLVGDYILTKDICVERKSIVDLIQSLNNNRLYN 1307
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y+ +LLIEF+ K L F
Sbjct: 1308 QINQMSKYYSIYVLLIEFN------------------TKHLFYFS--------------- 1334
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
++ KSS + KL +L L F +L+++WS T +LF+ LK ++P + I T
Sbjct: 1335 SLSDKSS-VYTKLIILCLQFSRLKILWSPFSLFTVKLFWSLKINAEQPDIFKSLHIDMTL 1393
Query: 280 NED 282
D
Sbjct: 1394 ERD 1396
>gi|209945578|gb|ACI97020.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 33/152 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEXFLXXKTYDDEPTXXNAKXXXAGGQXPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+E+ +VI DMREFRS+ P L+HKRGL + P+
Sbjct: 442 KET-PKVIXDMREFRSDXPCLIHKRGLEVLPL 472
>gi|146077847|ref|XP_001463356.1| putative DNA repair protein [Leishmania infantum JPCM5]
gi|134067441|emb|CAM65714.1| putative DNA repair protein [Leishmania infantum JPCM5]
Length = 1260
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 97/231 (41%), Gaps = 58/231 (25%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV+ D REFRS LP L++RG+ + P+T++ DY+LSP+ VERKS D S+ SGR+
Sbjct: 1035 RVVFDEREFRSSLPYHLYRRGMELIPLTLTTADYVLSPEYAVERKSAQDYFQSVMSGRIQ 1094
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q+ + R YA PL LIEF PF L
Sbjct: 1095 RQLAALARKYAHPLCLIEFHRGIPFRLM-------------------------------- 1122
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR-------------- 264
S I AK L +P++R +W+ P + A + LK+
Sbjct: 1123 ------QSGIYAKTAALMAAYPRVRFVWARSPAHAAGMLVLLKKSVAVANVDPADPLLTG 1176
Query: 265 ---DEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNL 312
D SA + T E T Y A + +SK PG+ + R + L
Sbjct: 1177 TSIDPGSAADVGGVAVTAAERETAHYAARV---LSKFPGITHQNAPRVMQL 1224
>gi|398010767|ref|XP_003858580.1| DNA repair protein, putative [Leishmania donovani]
gi|322496789|emb|CBZ31859.1| DNA repair protein, putative [Leishmania donovani]
Length = 1260
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 97/231 (41%), Gaps = 58/231 (25%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV+ D REFRS LP L++RG+ + P+T++ DY+LSP+ VERKS D S+ SGR+
Sbjct: 1035 RVVFDEREFRSSLPYHLYRRGMELIPLTLTTADYVLSPEYAVERKSAQDYFQSVMSGRIQ 1094
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q+ + R YA PL LIEF PF L
Sbjct: 1095 RQLAALARKYAHPLCLIEFHRGIPFRLM-------------------------------- 1122
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR-------------- 264
S I AK L +P++R +W+ P + A + LK+
Sbjct: 1123 ------QSGIYAKTAALMAAYPRVRFVWARSPAHAAGMLVLLKKSVAVANVDPADPLLTG 1176
Query: 265 ---DEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNL 312
D SA + T E T Y A + +SK PG+ + R + L
Sbjct: 1177 TSIDPGSAADVGGVAVTAAERETAHYAARV---LSKFPGITHQNAPRVMQL 1224
>gi|399218331|emb|CCF75218.1| unnamed protein product [Babesia microti strain RI]
Length = 1055
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 148/329 (44%), Gaps = 78/329 (23%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVE-----VY--QCAQS------------------- 39
LS+ S+ +V+ ++ RQ+E VY QC Q+
Sbjct: 715 LSNVFDSMVEGNVVIIQGNLGLFRQIELICSHVYLRQCYQAIYHLYHGTEDGVIINGEGI 774
Query: 40 EVKVKVFFMQYGESVEEQAYLSDLRRE-KKAFEYLIQEKTNMAVPTEQDGVSTEPEESCG 98
+KVKV + Y +S+ ++ + E KK + K+ +A P + + T +
Sbjct: 775 GIKVKVLILIYKDSIHSNSFSYHIDSEIKKWYRVSNSLKSVIAKPIIPNEIITSVNNTPT 834
Query: 99 R-VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
+ VIVD REF+S LP L GL I P + GDYI++ D C+ERKS DL SL GRL
Sbjct: 835 QLVIVDKREFKSPLPYQLFLDGLKIIPAFLKAGDYIITRDTCIERKSPQDLANSLTVGRL 894
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYY 216
+ QV++M + Y +LLIEFD+ N++L+ PF ++G +
Sbjct: 895 FNQVREMKKMYENVILLIEFDN-------FNFHLT---------------PFGRMKGQF- 931
Query: 217 LSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ +L L L L+L+WS+GP ++ EP +
Sbjct: 932 ---------NRTYTRLITLCLLTNNLQLMWSNGP----------QENIAEPCTQ------ 966
Query: 277 QTPNEDY-TDRYNAAIEDFISKLPGMAEW 304
Q E + D ++ +EDF+ K+P +++W
Sbjct: 967 QVRMELFEADSTSSLVEDFVKKIPCISDW 995
>gi|323450282|gb|EGB06164.1| hypothetical protein AURANDRAFT_16709, partial [Aureococcus
anophagefferens]
Length = 77
Score = 102 bits (255), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VI D REFR+ LP LH GL + P TI+VGDY+LSP++ VERK++ DL GSLQSGRL
Sbjct: 1 VIADAREFRAPLPSALHGAGLDLRPATITVGDYVLSPELVVERKAVGDLHGSLQSGRLVA 60
Query: 160 QVQQMCRHYAKPLLLIE 176
Q + M RHYA PLLL+E
Sbjct: 61 QAEAMGRHYATPLLLVE 77
>gi|157864669|ref|XP_001681043.1| putative DNA repair protein [Leishmania major strain Friedlin]
gi|68124337|emb|CAJ02193.1| putative DNA repair protein [Leishmania major strain Friedlin]
Length = 1260
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 58/231 (25%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++ D REFRS LP L++RG+ + P+T++ DY+LSP+ VERKS D S+ SGR+
Sbjct: 1035 RIVFDEREFRSSLPYHLYRRGMELIPLTLTTADYVLSPEYAVERKSAQDYFQSVMSGRIQ 1094
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q+ + R YA PL LIEF PF L +Q Y
Sbjct: 1095 RQLAALARKYAHPLCLIEFHRGIPFRL-------------------------MQSGVY-- 1127
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR-------------- 264
AK L +P++RL+W+ P + A + LK+
Sbjct: 1128 -----------AKTAALMAAYPRVRLVWARSPAHAAGMLVLLKKSVAVANVDPADPLLTG 1176
Query: 265 ---DEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNL 312
D SA T E T Y A + +SK PG+ + R + L
Sbjct: 1177 TSIDPGSAADVGGAAVTAAERETAHYAARV---LSKFPGITHQNAPRVMQL 1224
>gi|389584364|dbj|GAB67096.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1577
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 34/168 (20%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+ ++I P ++ VGDYIL+ DICVERK+I DLI SL + RLY
Sbjct: 1213 VIVDIRELKSDLSYKLYTSKMHIIPYSLLVGDYILTKDICVERKTIVDLIQSLNNNRLYN 1272
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y+ +LLIEF+ K L +Y S
Sbjct: 1273 QINQMSKYYSIYVLLIEFN------------------TKHL--------------FYFS- 1299
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEP 267
++ K+S I KL +L L F +L+++WS T +LF+ LK ++P
Sbjct: 1300 SLSDKNS-IYTKLIILCLQFSRLKILWSPFSLFTVKLFWSLKINAEQP 1346
>gi|209945596|gb|ACI97029.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYXXIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|342181185|emb|CCC90663.1| putative DNA repair protein [Trypanosoma congolense IL3000]
Length = 1227
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 32/218 (14%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VI D REFRS LP L+ RG+ I P+T+S DY+LSP +ERKS+ D I SL SGR+ T
Sbjct: 1001 VIFDEREFRSRLPYELYCRGIDIVPLTLSTADYVLSPSYALERKSVGDFISSLCSGRIRT 1060
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ + R Y P+ LIEFD + PF L ++ LS SR
Sbjct: 1061 QLGHLSRSYEHPMCLIEFDRSAPFRL--SFSLS-----------------------SASR 1095
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQG----RDEPSAEVASSI 275
+++ S + +++ L +P++ ++W+ +A + LK+ +PS +
Sbjct: 1096 EVSEGS--LYSRMARLFAAYPRVHVLWTRDAMQSAAVIHTLKRTCATESVDPSTPSLTGA 1153
Query: 276 GQTPN-EDYTDRYNAAIEDFISKLPGMAEWSRARTLNL 312
PN E T + + +S PG+ + R + L
Sbjct: 1154 CFDPNDESRTKEASHSAARVLSCFPGITASNMPRVMAL 1191
>gi|156101553|ref|XP_001616470.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148805344|gb|EDL46743.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1630
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 34/187 (18%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+ ++I P ++ VGDYIL+ DICVERK+I DLI SL + RL+
Sbjct: 1294 VIVDIRELKSDLSYKLYTSKMHIIPYSLLVGDYILTKDICVERKTIVDLIQSLNNNRLHN 1353
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ QM ++Y+ +LLIEF+ F Y+ S
Sbjct: 1354 QINQMSKYYSIYVLLIEFNTKHLF-------------------------------YFSS- 1381
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
++ K+S + KL +L L F +L+++WS T +LF+ LK ++P + I T
Sbjct: 1382 -LSDKNS-VYTKLIILCLQFSRLKILWSPFSLFTVKLFWSLKINAEQPDIFKSLHIDMTL 1439
Query: 280 NEDYTDR 286
D R
Sbjct: 1440 ERDAHQR 1446
>gi|429966069|gb|ELA48066.1| hypothetical protein VCUG_00489 [Vavraia culicis 'floridensis']
Length = 773
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 49/260 (18%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++ V+ + ++ R++E + K+ ++F+ Y ES EE+ Y+ +R EK+A
Sbjct: 475 LDVIQQNIVVLVDFNLGTFRKIE-----RMRRKMLIYFLYYKESYEEEQYVRRIREEKEA 529
Query: 70 FEYLIQEKT-------NMAVPTEQDGVSTEPEESCG-----RVIVDMREFRSELPVLLHK 117
FE I EK N + E + E E+ C V+VD RE R+ LP L+K
Sbjct: 530 FERFINEKAKLGLQDFNFFIDVEDEQFDVEEEDICSSKSKYNVLVDFRELRASLPFFLYK 589
Query: 118 RGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
+ V + GDY+ + VERK+I DLI SL +GRL +Q+ ++ +++
Sbjct: 590 AKNNVRVVCLEEGDYLF-DNFVVERKTIYDLIMSLNNGRLLSQMTRLSSNHS-------- 640
Query: 178 DHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTL 237
NYYL L+E++ +L Y +R+ K+S + +K LL +
Sbjct: 641 ----------NYYL--------LVEYES----QLSLAAYSNRNEIFKNS-LISKFVLLAI 677
Query: 238 HFPKLRLIWSSGPYNTAQLF 257
F KLR I+++ +A+L
Sbjct: 678 KFTKLRFIYTNNDILSAKLL 697
>gi|67624751|ref|XP_668658.1| repair endonuclease (gb|AAF01274.1) [Cryptosporidium hominis TU502]
gi|54659833|gb|EAL38395.1| repair endonuclease (gb|AAF01274.1) [Cryptosporidium hominis]
Length = 225
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 25/152 (16%)
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
+++ +GDY++S D+C+ERKS+ DL+ SL +GRL+TQ+Q + +HY+ P++LIE +
Sbjct: 1 MSLEIGDYVISRDVCIERKSLPDLVNSLSNGRLFTQLQWISKHYSTPVILIELNS----- 55
Query: 185 LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRL 244
LIE +++ +Q N+ + S DI KL LLT HFP ++L
Sbjct: 56 ---------------LIEILNHQG--MQQNFL---PVKFNSCDIYLKLILLTRHFPNIKL 95
Query: 245 IWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
IWS ++ + +K+ R++P+ + AS++
Sbjct: 96 IWSCNSSFSSLVILRIKKDREQPNLKDASTLN 127
>gi|71413054|ref|XP_808683.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70872939|gb|EAN86832.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 1166
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 29/219 (13%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D RE RS LP L++RG+ + P+T++ DY+LSP +ERKS D I SL SGR++T
Sbjct: 927 VVFDERELRSLLPYALYRRGIELVPLTLATADYVLSPLYALERKSAPDFIQSLFSGRIFT 986
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKP---FELQGNYY 216
Q+ + R Y P+ L+EFD + PF L + S AA D + P FE G +
Sbjct: 987 QLAALSRRYEFPMCLVEFDRSAPFRLS---FSSPSPAATS----DVSGPVAHFEGGGLF- 1038
Query: 217 LSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ--GRD--EPSAEVA 272
A++ L FP+++++WS P +A + E+K+ R+ +PS
Sbjct: 1039 -------------ARIARLYASFPRVQVLWSRDPTQSAGIIHEMKRTFAREAVDPSTPSL 1085
Query: 273 SSIGQTPNEDYTDRYNAAIED-FISKLPGMAEWSRARTL 310
+ P++ ++ + + +S PG+ + AR +
Sbjct: 1086 TRGNIDPHDSAMEKEASHLAARVLSCFPGITPGNAARVM 1124
>gi|71414322|ref|XP_809267.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70873623|gb|EAN87416.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 1149
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 29/219 (13%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D RE RS LP L++RG+ + P+T++ DY+LSP +ERKS D I SL SGR++T
Sbjct: 926 VVFDERELRSLLPYALYRRGIELVPLTLATADYVLSPLYALERKSAPDFIQSLFSGRIFT 985
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKP---FELQGNYY 216
Q+ + R Y P+ L+EFD + PF L + S AA D + P FE G +
Sbjct: 986 QLAALSRRYEFPMCLVEFDRSAPFRLS---FSSPSPAATS----DVSGPVAHFEGGGLF- 1037
Query: 217 LSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ--GRD--EPSAEVA 272
A++ L FP+++++WS P +A + E+K+ R+ +PS
Sbjct: 1038 -------------ARIARLYASFPRVQVLWSRDPTQSAGIIHEMKRTCAREAVDPSTPSL 1084
Query: 273 SSIGQTPNEDYTDRYNAAIED-FISKLPGMAEWSRARTL 310
+ P++ ++ + + +S PG+ + AR +
Sbjct: 1085 TRGNIDPHDSAMEKEASHLAARVLSCFPGITPGNAARVM 1123
>gi|407832739|gb|EKF98567.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 1279
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 25/217 (11%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D RE RS LP L++RG+ + P+T++ DY+LSP +ERKS D I SL SGR++T
Sbjct: 1000 VVFDERELRSLLPYALYRRGIELVPLTLATADYVLSPLYALERKSAPDFIQSLFSGRIFT 1059
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ + R Y P+ L+EFD + PF L F P +S
Sbjct: 1060 QLAALSRRYEFPMCLVEFDRSAPFRLS----------------FSSPSP---AATSNVSG 1100
Query: 220 DIAA-KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ--GRD--EPSAEVASS 274
+A + + A++ L FP+++++WS P +A + E+K+ R+ +PS +
Sbjct: 1101 PVAHFEGGGLFARIARLYASFPRVQVLWSRDPTQSAGIIHEMKRTCAREAVDPSTPSLTR 1160
Query: 275 IGQTPNEDYTDRYNAAIED-FISKLPGMAEWSRARTL 310
P++ ++ + + +S PG+ + AR +
Sbjct: 1161 GNIDPHDSAMEKEASHLAARVLSCFPGITPGNAARVM 1197
>gi|440491389|gb|ELQ74038.1| Structure-specific endonuclease ERCC1-XPF, catalytic component
XPF/ERCC4 [Trachipleistophora hominis]
Length = 770
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 59/299 (19%)
Query: 1 MFAQDLSSK--------LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGE 52
+ AQD+ S+ L +K VI + ++ R++E Q +++++ + Y E
Sbjct: 455 VLAQDMKSRIEFVKHKNLSEIKQNIVILLDFNLGTFRKIERMQK-----RMRIYLLYYKE 509
Query: 53 SVEEQAYLSDLRREKKAFEYLIQEKT-------NMAVPTEQDGVSTEPEE-----SCGRV 100
S EE+ Y+ +R EK AFE I +K N + +++ E ++ S V
Sbjct: 510 SHEEEEYVRRIREEKDAFERFINDKAKLGLQDFNFFIDVDEEIFDIEEKDTDLLKSKYNV 569
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VD RE R+ LP L+K + V + GDY+ + VERK++ DLI SL +GRL +Q
Sbjct: 570 LVDFRELRASLPFFLYKAKNNLRVVCLEEGDYLF-DNFIVERKTVYDLIMSLNNGRLLSQ 628
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRD 220
+ ++ F NYYL LIE+++ +L Y +R+
Sbjct: 629 MTRL------------------FSNHSNYYL--------LIEYEN----KLSLGAYSNRN 658
Query: 221 IAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
++ + +K LL + FP+L+ I+++ +A+L L+ R E S E +++ P
Sbjct: 659 ETFRNG-LISKFVLLAIKFPRLKFIYTNNDLLSARLLRCLQ--RKEMSVEKVNNLEIDP 714
>gi|154332519|ref|XP_001562076.1| putative DNA repair protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059524|emb|CAM37103.1| putative DNA repair protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1261
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 58/226 (25%)
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
P + ++ D RE RS LP L++RG+ + P+T+ DY+LSP+ VERKS+ D S+
Sbjct: 1026 PPSAVPCIVFDERELRSSLPYHLYRRGMQLIPLTLVTADYVLSPEYAVERKSVQDYAQSV 1085
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ 212
SGR+ Q+ + R YA PL LIEF PF L N
Sbjct: 1086 MSGRIQRQLAALSRRYAHPLCLIEFHRGVPFRLMQN------------------------ 1121
Query: 213 GNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVA 272
I AK++++ A +P++ +W+ P + A + LK+ +A+ A
Sbjct: 1122 -------GIYAKTAELMAA-------YPRVCFVWARSPAHAAGMLVFLKKSVAASNADPA 1167
Query: 273 S------SIG-----------QTPNEDYTDRYNAAIEDFISKLPGM 301
SIG T E T Y A + +SKLPG+
Sbjct: 1168 DPSLTGISIGLGSAADVGEVTATAAERETAHYAARV---LSKLPGI 1210
>gi|72389484|ref|XP_845037.1| DNA repair protein [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62176720|gb|AAX70820.1| DNA repair protein, putative [Trypanosoma brucei]
gi|70801571|gb|AAZ11478.1| DNA repair protein, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 1242
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 27/163 (16%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D REFRS LP L+ RG+ + P+T+ GDY+LSP +ERKS+ D I SL +GR+ +
Sbjct: 1011 VVFDEREFRSRLPYELYCRGIDLVPLTLLTGDYVLSPTYALERKSLLDFIHSLHTGRVNS 1070
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ ++ R Y P+LLIEFD + PF L F L G+
Sbjct: 1071 QLSRLSRSYDHPMLLIEFDRSTPFRLS----------------------FGLAGSVG--- 1105
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262
+ + +++ + FP++ +IW+ +A +K+
Sbjct: 1106 --EHSETGLFSRIARIFTSFPRVHVIWTRDATQSASFIHSMKR 1146
>gi|261328395|emb|CBH11372.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 1242
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 27/163 (16%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D REFRS LP L+ RG+ + P+T+ GDY+LSP +ERKS+ D I SL +GR+ +
Sbjct: 1011 VVFDEREFRSRLPYELYCRGIDLVPLTLLTGDYVLSPTYALERKSLLDFIHSLHTGRVNS 1070
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q+ ++ R Y P+LLIEFD + PF L F L G+
Sbjct: 1071 QLSRLSRSYDHPMLLIEFDRSTPFRLS----------------------FGLAGSVG--- 1105
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262
+ + +++ + FP++ +IW+ +A +K+
Sbjct: 1106 --EHSETGLFSRIARIFTSFPRVHVIWTRDATQSASFIHSMKR 1146
>gi|209945580|gb|ACI97021.1| meiotic 9 [Drosophila melanogaster]
Length = 471
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 33/151 (21%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE-----------------------------P 93
LRREK AFE++I K+ M +P QDG + E P
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDDNAKSRQAGGQAPQAP 441
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
+E+ +VIVDMREF +HK GL + P
Sbjct: 442 KET-PKVIVDMREFXXXXXXXIHKXGLEVLP 471
>gi|407396162|gb|EKF27377.1| DNA repair protein, putative [Trypanosoma cruzi marinkellei]
Length = 1189
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+ D RE RS LP L++RG+ + P+T++ DY+LSP +ERKS D I SL SGR++T
Sbjct: 950 VVFDERELRSLLPYALYRRGIELVPLTLTTADYVLSPLYALERKSAPDFIQSLFSGRIFT 1009
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF-ELQGNYYLS 218
Q+ + R Y P+ L+EFD F L + S I+ D + P +G +
Sbjct: 1010 QLAALSRRYEFPMCLVEFDRGAAFRLSFSSPASAAIS-------DVSGPVAHFEGGGLFT 1062
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262
R + L FP++ ++WS +A + E+K+
Sbjct: 1063 R------------IARLYATFPRVHVLWSRDATQSAGIIHEMKR 1094
>gi|209945556|gb|ACI97009.1| meiotic 9 [Drosophila melanogaster]
Length = 472
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 31/151 (20%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE---VKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + +F+ + YL
Sbjct: 322 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRXXPPXXXXXXYFLIHAXXXXXXXYLXX 381
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 382 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 441
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPV 125
+VIVDMREFRS+LP L+HKRGL + P+
Sbjct: 442 KETPKVIVDMREFRSDLPCLIHKRGLEVLPL 472
>gi|145537335|ref|XP_001454384.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422139|emb|CAK86987.1| unnamed protein product [Paramecium tetraurelia]
Length = 873
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 137/310 (44%), Gaps = 69/310 (22%)
Query: 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAF 70
++ KP +I + + ++++ + Q +V+ + E VE Y + E+ AF
Sbjct: 592 QTYKPDYIIMMEPNHSFLKELLINQN-----QVETILLMQNECVEFWQYYKEKMDEEVAF 646
Query: 71 EYLIQ----------------EKTNMAVPTEQDGVSTEPEESCG------RVIVDMREFR 108
E +I+ K NM + Q+ + EE R++VD REFR
Sbjct: 647 EKIIENLRSFSRSFEKPEDAIHKLNMQLQ-HQNSRQGKGEEFFQQSDLQPRILVDYREFR 705
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSIS--DLIGSLQSGRLYTQVQQMCR 166
++P L+ G+ + PV + VGD +LS + +ERKS+ DLI SL RL Q+Q+M
Sbjct: 706 CDVPPKLYFHGIQLTPVMLKVGDIVLSNNCAIERKSVETGDLIESLNQNRLDQQLQKMN- 764
Query: 167 HYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSS 226
FDH PF LIE+ N PF L LSR SS
Sbjct: 765 ---------SFDH--PF---------------LLIEYSDNIPFCLGS---LSRQSQNYSS 795
Query: 227 DITAKLQLLTL--HFPKLRLIWSSGPYNTAQLFFELKQ--GRDEPSAEVASS-----IGQ 277
+ ++LL L + K++++WS+ +T ++ +LKQ R+ P + S G
Sbjct: 796 NTRVMVRLLELITKYSKIQILWSNNSDDTIKIISKLKQTLARNSPDITIFKSNLQQQNGL 855
Query: 278 TPNEDYTDRY 287
NE TD +
Sbjct: 856 IQNEKITDYF 865
>gi|358341152|dbj|GAA48899.1| DNA excision repair protein ERCC-4 [Clonorchis sinensis]
Length = 186
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 47/59 (79%)
Query: 119 GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
GL +EP+T+SV DYIL+P +CVERKS+SDL GSL+SGRLY + M +HY P+LLIE
Sbjct: 80 GLKVEPMTLSVSDYILAPHLCVERKSVSDLNGSLKSGRLYQKCTAMSKHYPNPVLLIEV 138
>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
4304]
Length = 741
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY A + IR ++ + ++ + + +E Y S +++E+K ++ +++ K
Sbjct: 441 VVFYEAVPSEIRAIQRKGRTGRGREGRIVVLVTKGTRDEAYYYSSMKKERKMYDKILEIK 500
Query: 78 TNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPD 137
+ G PEE+ +VIVD RE RSE+ L + G IE + V DY++S
Sbjct: 501 RIIDRKQRSIGDYVLPEETGIKVIVDSRELRSEVVKHLREIGAKIEIRNLEVADYVVSDR 560
Query: 138 ICVERKSISDLIGS-LQSGRLYTQVQQMCRHYAKPLLLIE 176
+ VERK++ D + S +Q RL++QV ++ Y++P+++IE
Sbjct: 561 VAVERKTVEDFLNSIIQKERLFSQVARLKSAYSRPVIIIE 600
>gi|167044514|gb|ABZ09189.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
HF4000_APKG6J21]
Length = 228
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++ D RE +S +P LL G+ +E T+ VGDYI++P+ VERK+ISDL+ S+ GRL+
Sbjct: 7 RIVADEREKKSGIPDLLKGTGINLEIKTLPVGDYIVAPETVVERKTISDLVSSIFDGRLF 66
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
Q ++ HY P+L+IE D ++ EL N + + I+F
Sbjct: 67 DQCHRLKEHYQFPILIIEGDIDEIEELTENPLVFYGAISSIAIDF 111
>gi|167045230|gb|ABZ09890.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
HF4000_APKG8O8]
Length = 243
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++VD RE +S +P LL G+ +E T+ +GDYI++P+ VERK+ISDLI S+ GRL+
Sbjct: 22 RLVVDEREKKSRIPDLLKAVGINVEVKTLPIGDYIVAPETVVERKTISDLISSVFDGRLF 81
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
Q ++ +Y P+LLIE + ++ +L N+ + + +I+F
Sbjct: 82 DQCNRLKDNYQFPILLIEGNLDEIEKLTENWLVFYGAISSIVIDF 126
>gi|408404979|ref|YP_006862962.1| ERCC4-type nuclease [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365575|gb|AFU59305.1| ERCC4-type nuclease [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 244
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++VD RE S +P LL G I+ + VGDYI+SP+ VERK++ DLI S+ GRL+
Sbjct: 5 RIVVDEREKNSGIPELLKNAGAVIDFAQLKVGDYIVSPETAVERKTVRDLISSIYDGRLF 64
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q + +HY KPLL+++
Sbjct: 65 VQCSDLVKHYQKPLLVVQ 82
>gi|300521550|gb|ADK25986.1| ERCC4-type nuclease [Candidatus Nitrososphaera gargensis]
Length = 244
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++VD RE S +P LL G I+ + VGDYI+SP+ VERK++ DLI S+ GRL+
Sbjct: 5 RIVVDEREKNSGIPELLKNAGAVIDFAQLKVGDYIVSPETAVERKTVRDLISSIYDGRLF 64
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q + +HY KPLL+++
Sbjct: 65 VQCSDLVKHYQKPLLVVQ 82
>gi|212721710|ref|NP_001131543.1| RAD1 DNA repair protein homolog [Zea mays]
gi|194691806|gb|ACF79987.1| unknown [Zea mays]
Length = 167
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 199 FLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFF 258
LIEF +K F Q + D++ ++I +KL LL LHFP+LR+IWS + TA++F
Sbjct: 10 LLIEFSQDKSFSFQSANEIGDDVSP--TNIISKLSLLVLHFPRLRIIWSRSLHATAEIFM 67
Query: 259 ELKQGRDEPSAEVASSIGQTPNED-------YTDRYNAAIEDFISKLPGMAE 303
LK +DEP + A+ +G P+ED ++ YN + +F+ +LPG+ +
Sbjct: 68 SLKTNQDEPDEKKATRVG-VPSEDGIVEDDVRSENYNTSAIEFLRRLPGVTD 118
>gi|413926646|gb|AFW66578.1| hypothetical protein ZEAMMB73_828091 [Zea mays]
Length = 176
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 199 FLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFF 258
LIEF +K F Q + D++ ++I +KL LL LHFP+LR+IWS + TA++F
Sbjct: 19 LLIEFSQDKSFSFQSANEIGDDVSP--TNIISKLSLLVLHFPRLRIIWSRSLHATAEIFM 76
Query: 259 ELKQGRDEPSAEVASSIGQTPNED-------YTDRYNAAIEDFISKLPGMAE 303
LK +DEP + A+ +G P+ED ++ YN + +F+ +LPG+ +
Sbjct: 77 SLKTNQDEPDEKKATRVG-VPSEDGIVEDDVRSENYNTSAIEFLRRLPGVTD 127
>gi|389851479|ref|YP_006353713.1| Hef nuclease [Pyrococcus sp. ST04]
gi|388248785|gb|AFK21638.1| Hef nuclease [Pyrococcus sp. ST04]
Length = 758
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 71/111 (63%), Gaps = 6/111 (5%)
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
EK+ E +++++ E+ ++ + E+ R++VD RE RSE+ L G+ +E
Sbjct: 520 EKRTLEAWLEKRS------EEKSITEKIEKRGVRIVVDTRELRSEVVKRLKMLGVSLEFK 573
Query: 126 TISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
T+ VGDYI+S D+ +ERKS +D I S+ GRL+ QV+++ Y++P+++IE
Sbjct: 574 TLDVGDYIVSEDVAIERKSANDFIQSIIDGRLFDQVKRLKDAYSRPIIIIE 624
>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
Length = 770
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+ VD RE +S++P L + G +IE T+ VGDYI+S D+ VERKS +D I S+ GRL+
Sbjct: 560 IYVDSRELKSQVPKYLKELGAHIEVKTLDVGDYIVSEDVAVERKSANDFIQSIIDGRLFD 619
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ YA+P+++IE
Sbjct: 620 QVKRLTEAYARPVIIIE 636
>gi|167044986|gb|ABZ09651.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
HF4000_APKG8G2]
Length = 220
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 101 IVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+VD RE +S +P LL G+ +E T+ VGDYI++P+ VERK++SDL+ S+ GRL+ Q
Sbjct: 1 MVDEREKKSGIPDLLKGTGINLEIKTLPVGDYIVAPETIVERKTVSDLVSSIFDGRLFDQ 60
Query: 161 VQQMCRHYAKPLLLIEFDHNKPFELQGN 188
++ HY P+L+IE D ++ EL N
Sbjct: 61 CHRLKEHYQFPILIIEGDIDEIEELTEN 88
>gi|161527945|ref|YP_001581771.1| ERCC4 domain-containing protein [Nitrosopumilus maritimus SCM1]
gi|160339246|gb|ABX12333.1| ERCC4 domain protein [Nitrosopumilus maritimus SCM1]
Length = 228
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+IVD RE +S +P LL GL +E T+ +GDYI++P+ VERKSI DL+ S+ GRL+
Sbjct: 7 RIIVDERERKSGIPELLKSVGLNLEMKTLPIGDYIVAPETVVERKSIRDLMASVFDGRLF 66
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGN 188
Q ++ H+ P++L+E + ++ E+ N
Sbjct: 67 DQCTRLKEHFENPVVLMEGNVDEIEEITEN 96
>gi|393796031|ref|ZP_10379395.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 228
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+IVD RE +S +P LL GL IE T+ +GDYI++P+ VERKSI DL+ S+ GRL+
Sbjct: 7 RIIVDERERKSGIPDLLTSVGLNIEMKTLPIGDYIVAPETVVERKSIRDLMSSVFDGRLF 66
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
Q ++ H+ P++L+E + ++ E+ N + + +I+F
Sbjct: 67 DQCSRLKEHFEFPIVLMEGNVDEIEEITENPMIFYGALSTVVIDF 111
>gi|378754647|gb|EHY64677.1| hypothetical protein NERG_02296 [Nematocida sp. 1 ERTm2]
Length = 422
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 6/170 (3%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQ--CAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFE 71
K T +I N + +R+V + + + V+ V + +S EE YL ++ EK AF
Sbjct: 129 KITKIILMNHSLGFLRKVNMCRERWNKKGVEFSVTIINLRDSSEELNYLQEIAAEKDAFL 188
Query: 72 YLIQEKTNMAVPTEQDGVSTEPEESCGRVI-VDMREFRSELPVLLHKR---GLYIEPVTI 127
Y I K N +++ + EP ++ +D+RE RS LP+ L ++ +E +
Sbjct: 189 YGIGFKQNRPEAIDKNLYTKEPNNPNAPLLEIDIRELRSSLPLYLAQKFNSQFRLEFKQL 248
Query: 128 SVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
VGDYIL+ +ERK I D GSL +GRL Q+Q + LLIEF
Sbjct: 249 PVGDYILNKSYYIERKRIDDFAGSLNNGRLMKQLQALDYIRGSGYLLIEF 298
>gi|33359440|ref|NP_877878.1| ERCC4-like helicase/ERCC4-type nuclease [Pyrococcus horikoshii OT3]
gi|3258336|dbj|BAA31019.1| 650aa long hypothetical ATP-dependent RNA helicase [Pyrococcus
horikoshii OT3]
Length = 650
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK------KAFE 71
VIFY +AIR V+ + +V + + +E Y S ++EK +
Sbjct: 444 VIFYEPVPSAIRSVQRRGRTGRQKPGRVVILMAQGTRDEAYYWSSRQKEKIMRETIRMVS 503
Query: 72 YLIQEKTNMA----VPTEQDGVSTEPEESCG--RVIVDMREFRSELPVLLHKRGLYIEPV 125
+++++ ++ V E + E ++ G +V++D RE RSE+ L G+ IE
Sbjct: 504 QMVRKERQLSLESYVKREVNEEIKEEKKETGGIKVVIDSRELRSEVVKKLKTLGIKIEVR 563
Query: 126 TISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
T+ VGDYI+S D+ +ERKS +D I S+ GRL+ QV+++ Y +P+++IE
Sbjct: 564 TLDVGDYIVSEDVAIERKSANDFIQSIIDGRLFDQVKRLKEAYPRPVIIIE 614
>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
Length = 748
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREK------KAFE 71
VIFY +AIR V+ + +V + + +E Y S ++EK +
Sbjct: 444 VIFYEPVPSAIRSVQRRGRTGRQKPGRVVILMAQGTRDEAYYWSSRQKEKIMRETIRMVS 503
Query: 72 YLIQEKTNMA----VPTEQDGVSTEPEESCG--RVIVDMREFRSELPVLLHKRGLYIEPV 125
+++++ ++ V E + E ++ G +V++D RE RSE+ L G+ IE
Sbjct: 504 QMVRKERQLSLESYVKREVNEEIKEEKKETGGIKVVIDSRELRSEVVKKLKTLGIKIEVR 563
Query: 126 TISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
T+ VGDYI+S D+ +ERKS +D I S+ GRL+ QV+++ Y +P+++IE
Sbjct: 564 TLDVGDYIVSEDVAIERKSANDFIQSIIDGRLFDQVKRLKEAYPRPVIIIE 614
>gi|407464324|ref|YP_006775206.1| ERCC4 domain-containing protein [Candidatus Nitrosopumilus sp. AR2]
gi|407047512|gb|AFS82264.1| ERCC4 domain-containing protein [Candidatus Nitrosopumilus sp. AR2]
Length = 233
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+IVD RE +S +P LL GL +E T+ +GDYI++P+ VERKSI DL+ S+ GRL+
Sbjct: 12 RIIVDERERKSGIPDLLKSVGLNLEMKTLPIGDYIVAPETIVERKSIRDLMASVFDGRLF 71
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGN 188
Q ++ H+ P++L+E + ++ E+ N
Sbjct: 72 DQCARLKEHFEHPVVLMEGNVDEIDEITEN 101
>gi|124027717|ref|YP_001013037.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
gi|123978411|gb|ABM80692.1| predicted ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
Length = 223
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 39/169 (23%)
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
PE S RV VD RE S +P LL + G + VGDYI+S + ERK++ DL SL
Sbjct: 2 PECSRPRVYVDEREKASPIPRLLREMGAAVIYTVAGVGDYIVSDRVAFERKTMHDLAASL 61
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQ 212
GRLY Q +++ HY P++L+E D P EL+
Sbjct: 62 FDGRLYDQARRLSEHYEVPIILVEGD---PAELE-------------------------- 92
Query: 213 GNYYLSRDIAAKSSDITAKLQLLTLHFP-KLRLIWSSGPYNTAQLFFEL 260
S + KL LL + +R++WSSGP +A++ + +
Sbjct: 93 ---------RVTSRALQVKLALLAISLDYSVRIVWSSGPEESAKIIYSV 132
>gi|389848441|ref|YP_006350680.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|448616895|ref|ZP_21665605.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|388245747|gb|AFK20693.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|445751550|gb|EMA02987.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
Length = 870
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 90 STEPEESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDL 148
TE EES ++VD RE S + L KR L T++VGDYILS + VERKSISD
Sbjct: 650 GTEGEESV-EIVVDQRELDSHIARTLSKRDDLTTRLETLAVGDYILSDRVAVERKSISDF 708
Query: 149 IGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+ +L G L+ Q+ + RHYA+PLL+IE
Sbjct: 709 LDTLTGGDRSLFGQIADLTRHYARPLLIIE 738
>gi|435850474|ref|YP_007312060.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
gi|433661104|gb|AGB48530.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
Length = 750
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY + IR ++ + +V + + +E Y S L +E++ + + +
Sbjct: 448 VVFYEPIPSEIRSIQRKGRTARKHAGRVVVLVTKGTRDEGYYWSSLSKERRMQSNMKELQ 507
Query: 78 TNMA-------------VPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
NM+ V +Q +S E E RV++D RE RS++ L K G+ ++
Sbjct: 508 ENMSANATTLEQYVQPQVEKDQKKLS-EFENEGIRVVIDHREVRSQVARELEKLGVDVDV 566
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
T+ VGDY++S I +ERKS D + SL + L+ Q+ + R Y KP+LLIE
Sbjct: 567 KTLEVGDYVISERIAIERKSTEDFVNSLLNNTLFEQISNISRSYQKPVLLIE 618
>gi|386876634|ref|ZP_10118733.1| ERCC4 domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386805596|gb|EIJ65116.1| ERCC4 domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 228
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 66/105 (62%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R++VD RE +S +P LL G+ IE T+ +GDYI++ + VERKSI DL+ S+ GRLY
Sbjct: 7 RIVVDERERKSGIPDLLKSIGMKIEMKTLPIGDYIVASETIVERKSIRDLMASVFDGRLY 66
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
Q ++ H+ P++L+E + ++ E+ N + ++ +++F
Sbjct: 67 DQCSRLKEHFEHPIVLMEGNVDEIEEITENPLIFYGALSRVVLDF 111
>gi|397652338|ref|YP_006492919.1| Hef nuclease [Pyrococcus furiosus COM1]
gi|393189929|gb|AFN04627.1| Hef nuclease [Pyrococcus furiosus COM1]
Length = 763
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ +E T+ VGDYI+S D+ +ERKS +D I S+ GRL+
Sbjct: 551 KVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDFIQSIIDGRLF 610
Query: 159 TQVQQMCRHYAKPLLLIE 176
QV+++ Y++P++++E
Sbjct: 611 DQVKRLKEAYSRPIMIVE 628
>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
Length = 764
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ +E T+ VGDYI+S D+ +ERKS +D I S+ GRL+
Sbjct: 552 KVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDFIQSIIDGRLF 611
Query: 159 TQVQQMCRHYAKPLLLIE 176
QV+++ Y++P++++E
Sbjct: 612 DQVKRLKEAYSRPIMIVE 629
>gi|375084016|ref|ZP_09731027.1| Hef nuclease [Thermococcus litoralis DSM 5473]
gi|374741315|gb|EHR77742.1| Hef nuclease [Thermococcus litoralis DSM 5473]
Length = 771
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 55/77 (71%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE +S++P +L + G ++E T+ VGDYI+S D+ +ERK+ +D I S+ GRL+
Sbjct: 557 VYVDSRELKSQVPKILKELGAHLEVRTLDVGDYIVSEDVAIERKAANDFIQSIIDGRLFD 616
Query: 160 QVQQMCRHYAKPLLLIE 176
Q +++ Y++P+++IE
Sbjct: 617 QAKRLKEAYSRPVIIIE 633
>gi|390961773|ref|YP_006425607.1| Hef nuclease [Thermococcus sp. CL1]
gi|390520081|gb|AFL95813.1| Hef nuclease [Thermococcus sp. CL1]
Length = 785
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE RS +P LL + G +E T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 576 VYVDSRELRSGVPKLLKELGAEVEVRTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 635
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ R Y KP+++IE
Sbjct: 636 QVERLKRAYEKPVIIIE 652
>gi|223477217|ref|YP_002581470.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
gi|214032443|gb|EEB73273.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
Length = 807
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE RS +P +L + G IE T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 596 VYVDSRELRSGVPKILKELGAEIEVKTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 655
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ R Y KP+++IE
Sbjct: 656 QVERLKRAYEKPVIIIE 672
>gi|337284763|ref|YP_004624237.1| Hef nuclease [Pyrococcus yayanosii CH1]
gi|334900697|gb|AEH24965.1| Hef nuclease [Pyrococcus yayanosii CH1]
Length = 751
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE-------KKAF 70
V+FY +AIR V+ +V + + +E Y S ++E K+
Sbjct: 441 VVFYEPVPSAIRSVQRRGRTGRHKPGRVVILMARGTRDEAYYWSSRQKERLMVETIKRVN 500
Query: 71 EYLIQEK-TNMAV---PTEQDGVSTEP---EESCGR---VIVDMREFRSELPVLLHKRGL 120
E L +E+ T++ V P+E++ E EE GR V VD RE +S + L + GL
Sbjct: 501 EMLRRERQTSLEVFVKPSEKEERGEEAWKVEERRGRGIIVYVDSRELKSPVVKKLKELGL 560
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
IE T+ V DY++S D+ +ERKS +D + S+ GRL+ QV+++ Y +PLL++E
Sbjct: 561 KIEVKTLDVADYVVSEDVGIERKSANDFLQSIIDGRLFDQVKRLKDAYPRPLLIVE 616
>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, [Thermococcus sibiricus MM 739]
gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
739]
Length = 772
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 54/77 (70%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+ VD RE +S++P +L + G ++E T+ +GDYI+S D+ VERK+ +D I S+ GRL+
Sbjct: 562 IYVDSRELKSQVPKILKELGAHLEVKTLDIGDYIVSEDVVVERKAANDFIQSIIDGRLFD 621
Query: 160 QVQQMCRHYAKPLLLIE 176
Q +++ Y KP+++IE
Sbjct: 622 QARRLKEAYLKPIIIIE 638
>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
[Thermococcus gammatolerans EJ3]
Length = 801
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+ VD RE RS +P +L + G IE T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 590 IYVDSRELRSGVPKILKELGAEIEVKTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 649
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ R Y KP+++IE
Sbjct: 650 QVERLKRAYEKPVIIIE 666
>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
Length = 752
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ IE T+ VGDYI+S ++ +ERKS +D I S+ GRL+
Sbjct: 542 KVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLF 601
Query: 159 TQVQQMCRHYAKPLLLIE 176
QV+++ Y +P++++E
Sbjct: 602 DQVKRLKDSYPRPVVIVE 619
>gi|380741022|tpe|CCE69656.1| TPA: hef nuclease [Pyrococcus abyssi GE5]
Length = 749
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ IE T+ VGDYI+S ++ +ERKS +D I S+ GRL+
Sbjct: 539 KVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLF 598
Query: 159 TQVQQMCRHYAKPLLLIE 176
QV+++ Y +P++++E
Sbjct: 599 DQVKRLKDSYPRPVVIVE 616
>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
Length = 749
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
VIFY +AIR V+ + +V + + ++AY R++++ I+
Sbjct: 441 VIFYEPVPSAIRSVQRRGRTGRQRPGRVVIL-IAQGTRDEAYYWSSRQKERIMRETIKMV 499
Query: 78 TNMAVPTEQDGVST----------------EPEESCG-RVIVDMREFRSELPVLLHKRGL 120
+ M +Q + + + EES G +VI+D RE RSE+ L G
Sbjct: 500 SQMVKREKQISLESYVKKEVKEEEETKPERKAEESKGIKVIIDSRELRSEVVKRLKILGA 559
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
IE + VGDYI+S ++ +ERKS +D I S+ GRL+ QV+++ Y +P++++E
Sbjct: 560 KIEVKNLDVGDYIVSDEVAIERKSANDFIQSIIDGRLFDQVKRLKEAYPRPVIIVE 615
>gi|433430762|ref|ZP_20407558.1| Hef nuclease, partial [Haloferax sp. BAB2207]
gi|432194314|gb|ELK50952.1| Hef nuclease, partial [Haloferax sp. BAB2207]
Length = 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLI 149
T+ E++ ++VD RE S + L KR L T++VGDY+LS + VERKS+SD +
Sbjct: 159 TDDEDTV-EIVVDQRELDSNIARTLSKRADLTTRLETLAVGDYVLSDRVAVERKSVSDFL 217
Query: 150 GSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+L G ++ Q+ + RHYA+PLL+IE
Sbjct: 218 DTLTGGDRSIFEQIADLTRHYARPLLVIE 246
>gi|30749329|pdb|1J22|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Selenomet
Derivative
gi|30749330|pdb|1J23|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain
gi|30749331|pdb|1J24|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Ca Cocrystal
gi|30749332|pdb|1J25|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
PYROCOCCUS Furiosus, Nuclease Domain, Mn Cocrystal
Length = 143
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 39/160 (24%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ +E T+ VGDYI+S D+ +ERKS +DLI S+ G L+
Sbjct: 6 KVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGGLF 65
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
QV+++ Y++P++++E G+ Y R++ P ++G
Sbjct: 66 DQVKRLKEAYSRPIMIVE----------GSLYGIRNV-----------HPNAIRGA---- 100
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFF 258
IAA + D P +I+SS P TAQ F
Sbjct: 101 --IAAVTVD---------FGVP---IIFSSTPEETAQYIF 126
>gi|448605289|ref|ZP_21657964.1| Hef nuclease [Haloferax sulfurifontis ATCC BAA-897]
gi|445742813|gb|ELZ94306.1| Hef nuclease [Haloferax sulfurifontis ATCC BAA-897]
Length = 854
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLI 149
T+ EE+ ++VD RE S + L KR L T++VGDY+LS + VERKS+SD +
Sbjct: 635 TDDEETV-EIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVLSDRVAVERKSVSDFL 693
Query: 150 GSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+L G ++ QV + RHYA+PLL+IE
Sbjct: 694 DTLTGGDRSIFEQVADLTRHYARPLLVIE 722
>gi|448622213|ref|ZP_21668907.1| Hef nuclease [Haloferax denitrificans ATCC 35960]
gi|445754295|gb|EMA05700.1| Hef nuclease [Haloferax denitrificans ATCC 35960]
Length = 857
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 76 EKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYIL 134
E+ P T+ EE+ ++VD RE S + L KR L T++VGDY+L
Sbjct: 623 ERDEADDPATVAAAGTDDEETV-EIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVL 681
Query: 135 SPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
S + VERKS+SD + +L G ++ QV + RHYA+PLL+IE
Sbjct: 682 SDRVAVERKSVSDFLDTLTGGDRSIFEQVADLTRHYARPLLVIE 725
>gi|448560390|ref|ZP_21633838.1| Hef nuclease [Haloferax prahovense DSM 18310]
gi|445722040|gb|ELZ73703.1| Hef nuclease [Haloferax prahovense DSM 18310]
Length = 864
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLI 149
T+ EE+ ++VD RE S + L KR L T++VGDY+LS + VERKS+SD +
Sbjct: 645 TDDEETV-EIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVLSDRVAVERKSVSDFL 703
Query: 150 GSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+L G ++ Q+ + RHYA+PLL+IE
Sbjct: 704 DTLTGGDRSIFEQIADLTRHYARPLLIIE 732
>gi|448582933|ref|ZP_21646412.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
gi|445730387|gb|ELZ81976.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
Length = 871
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
P T+ EE+ ++VD RE S + L KR L T++VGDY+LS + VE
Sbjct: 644 PATVAAAGTDDEETV-EIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVLSDRVAVE 702
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
RKS+SD + +L G ++ Q+ + RHYA+PLL+IE
Sbjct: 703 RKSVSDFLDTLTGGDRSIFEQIADLTRHYARPLLIIE 739
>gi|410670654|ref|YP_006923025.1| Hef nuclease [Methanolobus psychrophilus R15]
gi|409169782|gb|AFV23657.1| Hef nuclease [Methanolobus psychrophilus R15]
Length = 759
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+VIVD RE +S + L K G+ I T+ VGDYILS I VERKS D GSL +L+
Sbjct: 550 QVIVDQREVKSSVARELEKAGVEIILHTLEVGDYILSDRIAVERKSCEDFTGSLIENKLF 609
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q+ + R Y KP+L+IE
Sbjct: 610 EQISNLARTYEKPVLIIE 627
>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
Length = 754
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY + IR ++ + +V + + +E Y S REKK + Q +
Sbjct: 449 VVFYEPIPSEIRSIQRKGRTGRKHAGRVVVLVTKGTRDEGYYWSSANREKKMQGNIKQLQ 508
Query: 78 TNMAVPTEQDGV-------------STEPEESCG-RVIVDMREFRSELPVLLHKRGLYIE 123
+A +++ + EP + G V+ D RE RS + L K G +
Sbjct: 509 ETLATDEQENAFIKEKQRSLEDFDNNVEPADESGPEVVADQREIRSTVTRNLQKAGASLS 568
Query: 124 PVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
T+ VGDY++S +I +ERK D + SL G+L+ Q+ + R Y K +L+IE
Sbjct: 569 VRTLEVGDYVVSENIAIERKESGDFVNSLIEGKLFEQISNLTRTYEKTILIIE 621
>gi|448611374|ref|ZP_21662008.1| Hef nuclease [Haloferax mucosum ATCC BAA-1512]
gi|445743806|gb|ELZ95287.1| Hef nuclease [Haloferax mucosum ATCC BAA-1512]
Length = 841
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+E+ ++VD RE S + L KR L T++VGDYILS + VERKS+SD + +L
Sbjct: 624 DETGVEIVVDQRELDSHIARTLSKRDDLTTRLETLAVGDYILSDRVAVERKSVSDFLDTL 683
Query: 153 QSG--RLYTQVQQMCRHYAKPLLLIE 176
G ++ Q+ + RHYA+PLL+IE
Sbjct: 684 TGGDRSIFEQIADLTRHYARPLLIIE 709
>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus kodakarensis KOD1]
Length = 804
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 40/173 (23%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE RS +P L + G +E T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 597 VYVDSRELRSGVPKHLRELGAEVEVRTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 656
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
QV+++ R Y KP+++IE G Y R++ P ++G
Sbjct: 657 QVERLKRAYEKPVIIIE----------GELYGIRNV-----------HPNAIRGA----- 690
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFEL-KQGRDEPSAEV 271
IAA +TL + + +++SSGP TAQ + + K+ ++E EV
Sbjct: 691 -IAA-----------VTLDW-GVPILFSSGPEETAQFIYLMAKREQEERKKEV 730
>gi|448597893|ref|ZP_21654818.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
gi|445739354|gb|ELZ90863.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
Length = 862
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+E ++VD RE S + L KR L T++VGDY+LS + VERKS+SD + +L
Sbjct: 638 DEDTVEIVVDQRELDSNIARTLSKRADLTTRLETLAVGDYVLSDRVAVERKSVSDFLDTL 697
Query: 153 QSG--RLYTQVQQMCRHYAKPLLLIE 176
G ++ Q+ + RHYA+PLL+IE
Sbjct: 698 TGGDRSIFEQIADLTRHYARPLLVIE 723
>gi|448544236|ref|ZP_21625549.1| Hef nuclease [Haloferax sp. ATCC BAA-646]
gi|448551248|ref|ZP_21629390.1| Hef nuclease [Haloferax sp. ATCC BAA-645]
gi|448558259|ref|ZP_21632933.1| Hef nuclease [Haloferax sp. ATCC BAA-644]
gi|445705740|gb|ELZ57633.1| Hef nuclease [Haloferax sp. ATCC BAA-646]
gi|445710804|gb|ELZ62602.1| Hef nuclease [Haloferax sp. ATCC BAA-645]
gi|445713147|gb|ELZ64926.1| Hef nuclease [Haloferax sp. ATCC BAA-644]
Length = 845
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLI 149
T+ EE+ ++VD RE S + L KR L T++VGDY+LS + VERKS+SD +
Sbjct: 626 TDDEETV-EIVVDQRELDSNIARSLSKREDLTTRLETLAVGDYVLSDRVAVERKSVSDFL 684
Query: 150 GSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+L G ++ Q+ + RHYA+PLL+IE
Sbjct: 685 DTLTGGDRSIFEQIADLTRHYARPLLVIE 713
>gi|409095334|ref|ZP_11215358.1| Hef nuclease [Thermococcus zilligii AN1]
Length = 796
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE +S +P LL + G IE T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 584 VYVDSRELKSGVPKLLKELGAEIEVRTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 643
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ + Y KP+++IE
Sbjct: 644 QVERLKKAYEKPVIIIE 660
>gi|387592554|gb|EIJ87578.1| hypothetical protein NEQG_02125 [Nematocida parisii ERTm3]
gi|387595180|gb|EIJ92805.1| hypothetical protein NEPG_02204 [Nematocida parisii ERTm1]
Length = 699
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Query: 15 PTSVIFYNADVAAIRQVEV--YQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
P +I N + ++R++ + + + V + + +S EE YL + EK AF Y
Sbjct: 407 PIHIILMNYSIGSLRRINMCRNRWHRRGVDFPLTIINIRDSSEEINYLQETVAEKDAFLY 466
Query: 73 LIQEKTNMAVPTEQDGVSTEPEESCGRVI-VDMREFRSELPVLLHKR--GLY-IEPVTIS 128
I K N E+ + E E+ ++ +D+RE +S LP+ L ++ L+ E ++
Sbjct: 467 GIGLKQNRPEIIEKQLYAKEAEDPKAPLLQIDIRELKSSLPLHLVQKFNNLFRFEFKQLT 526
Query: 129 VGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
VGDY+L+ +ERK I D + SL++GRL+ Q+Q + LLIEF
Sbjct: 527 VGDYVLNQSYYIERKRIDDFVSSLKNGRLFKQLQVLEYTKGASYLLIEF 575
>gi|341583122|ref|YP_004763614.1| Hef nuclease [Thermococcus sp. 4557]
gi|340810780|gb|AEK73937.1| Hef nuclease [Thermococcus sp. 4557]
Length = 778
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V D RE RS +P L + G +E T+ V DY++S D+ +ERKS +D I S+ GRL+
Sbjct: 569 VYADSRELRSGVPKHLRELGADVEVRTLDVADYVVSEDVGIERKSANDFIQSIIDGRLFD 628
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+++ R Y KP+++IE
Sbjct: 629 QVERLKRAYEKPVIIIE 645
>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
gi|448293719|ref|ZP_21483822.1| Hef nuclease [Haloferax volcanii DS2]
gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
gi|445569640|gb|ELY24211.1| Hef nuclease [Haloferax volcanii DS2]
Length = 858
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+E ++VD RE S + L KR L T++VGDY+LS + VERKS+SD + +L
Sbjct: 641 DEDTVEIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVLSDRVAVERKSVSDFLDTL 700
Query: 153 QSG--RLYTQVQQMCRHYAKPLLLIE 176
G ++ Q+ + RHYA+PLL+IE
Sbjct: 701 TGGDRSIFEQIADLTRHYARPLLVIE 726
>gi|448573743|ref|ZP_21641226.1| Hef nuclease [Haloferax lucentense DSM 14919]
gi|445718649|gb|ELZ70339.1| Hef nuclease [Haloferax lucentense DSM 14919]
Length = 855
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
+E ++VD RE S + L KR L T++VGDY+LS + VERKS+SD + +L
Sbjct: 638 DEDTVEIVVDQRELDSNIARTLSKREDLTTRLETLAVGDYVLSDRVAVERKSVSDFLDTL 697
Query: 153 QSG--RLYTQVQQMCRHYAKPLLLIE 176
G ++ Q+ + RHYA+PLL+IE
Sbjct: 698 TGGDRSIFEQIADLTRHYARPLLVIE 723
>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 851
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 76 EKTNMAVPTEQDGVSTEPE---ESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGD 131
E VP E G + EP + ++ D RE S + L R G+ E T++VGD
Sbjct: 612 EDETAGVPDETKGSTPEPHADGDETVAIVADQRELDSTIARDLSTREGVQTELETLAVGD 671
Query: 132 YILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
Y+LS + VERK++SD + +L G ++ QV RHYA+P+++IE G+
Sbjct: 672 YVLSDRVVVERKTVSDFLDTLTGGDRSMFEQVGDATRHYARPVVVIEG---------GDL 722
Query: 190 YLSRDIAAKFL 200
Y R++ K +
Sbjct: 723 YGERNVHHKAI 733
>gi|355686463|gb|AER98066.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Mustela putorius furo]
Length = 298
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 55/77 (71%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y++++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 222 LTRVLHEVEPRYVVLYDSELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 281
Query: 66 EKKAFEYLIQEKTNMAV 82
EK+AFE LI+EK +M V
Sbjct: 282 EKEAFEKLIREKASMVV 298
>gi|15920650|ref|NP_376319.1| hypothetical protein ST0439 [Sulfolobus tokodaii str. 7]
gi|15621433|dbj|BAB65428.1| repair endonuclease XPF [Sulfolobus tokodaii str. 7]
Length = 232
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P ++ + G + +SVGDY++S +I +ERKS+ DL+ S+ R +
Sbjct: 3 RIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFD 204
Q+ ++ YAKP +LIE D K ++ + ++EFD
Sbjct: 63 DQLSRLSEAYAKPFILIEGDMEKVRKITSRWKAINSALTSAILEFD 108
>gi|448588730|ref|ZP_21649309.1| Hef nuclease, partial [Haloferax elongans ATCC BAA-1513]
gi|445736217|gb|ELZ87762.1| Hef nuclease, partial [Haloferax elongans ATCC BAA-1513]
Length = 757
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 89 VSTEPEESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISD 147
++T + ++VD RE S + L KR L T++VGDYILS + VERKS++D
Sbjct: 627 IATAGTDDGVEIVVDQRELDSNIARTLSKRDDLTTRLETLAVGDYILSDRVAVERKSVAD 686
Query: 148 LIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+ +L G L+ Q+ + RHYA+PLL++E
Sbjct: 687 FLDTLTEGDRSLFDQIADLTRHYARPLLIVE 717
>gi|6503090|gb|AAF14584.1|AF191494_1 nucleotide excision repair protein XP-F homolog [Arabidopsis
thaliana]
Length = 688
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQ 86
LI++K++M +P +Q
Sbjct: 675 LIRQKSSMIIPVDQ 688
>gi|79329474|ref|NP_001031991.1| DNA repair endonuclease UVH1 [Arabidopsis thaliana]
gi|332007265|gb|AED94648.1| DNA repair endonuclease UVH1 [Arabidopsis thaliana]
Length = 689
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQ 86
LI++K++M +P +Q
Sbjct: 675 LIRQKSSMIIPVDQ 688
>gi|118575222|ref|YP_874965.1| helicase-associated endonuclease for fork-structured DNA
[Cenarchaeum symbiosum A]
gi|118193743|gb|ABK76661.1| helicase-associated endonuclease for fork-structured DNA
[Cenarchaeum symbiosum A]
Length = 231
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+IVD RE RS +P LL + +E T+ +GDYI++ + VERKS+ DLI S+ GRLY
Sbjct: 11 RIIVDERERRSGIPDLLKSVDINVEVKTLPIGDYIVAHETVVERKSLPDLISSVFDGRLY 70
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q ++ ++ P++L+E
Sbjct: 71 DQCDRLRENFEHPIILME 88
>gi|448578746|ref|ZP_21644122.1| Hef nuclease [Haloferax larsenii JCM 13917]
gi|445725329|gb|ELZ76953.1| Hef nuclease [Haloferax larsenii JCM 13917]
Length = 849
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++VD RE S + L KR L T++VGDY+LS + VERKS++D + +L G
Sbjct: 638 IVVDQRELDSNIARTLSKRDDLTTRLETLAVGDYVLSDRVAVERKSVADFLDTLTEGDRS 697
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
L+ Q+ + RHYA+PLL++E
Sbjct: 698 LFDQIADLTRHYARPLLIVE 717
>gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666]
gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666]
Length = 217
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 102 VDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
VDMRE RS + +L + + +E V ++VGD++LS D+ VERK +D+I S+ RL+ Q
Sbjct: 9 VDMREQRSGVTQILERSQVVSVEYVELAVGDFVLSHDVVVERKEATDMINSILDRRLFGQ 68
Query: 161 VQQMCRHYAKPLLLIEFD 178
V QM +Y +P++LIE D
Sbjct: 69 VAQMKANYTRPIILIEGD 86
>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus onnurineus NA1]
Length = 789
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 40/173 (23%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE RS +P L G +E T+ V DY++S ++ +ERKS +D I S+ GRL+
Sbjct: 579 VYVDSRELRSGVPKHLRGLGAEVEVKTLDVADYVVSEEVGIERKSANDFIQSIIDGRLFD 638
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
QV+++ + Y KP+++IE G Y R++ P ++G
Sbjct: 639 QVERLKKAYEKPVIIIE----------GQLYGIRNV-----------HPNAIRGA----- 672
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFEL-KQGRDEPSAEV 271
IAA + D +++SSGP TAQ + + K+ ++E EV
Sbjct: 673 -IAAVTLDWGVP------------ILFSSGPEETAQFIYLMAKREQEERKKEV 712
>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
str. Fusaro]
Length = 938
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 55 EEQAYLSDLRREKKAFEY---LIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSEL 111
EE++ +++ +K F Y L +KT + T + E +++VD RE +S +
Sbjct: 679 EEKSKEENVKERQKTFVYFETLSGKKTELTPETAAEVSKIETNSESPKIVVDFREAKSGV 738
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR--LYTQVQQMCRHYA 169
+L K G+ + T+ +GDY++S + VERK D + SL G+ L+ Q+ + R Y
Sbjct: 739 ANVLDKLGVEVIFTTLEIGDYVVSDRLAVERKRTDDFVNSLVDGKRNLFAQLSDLTRVYQ 798
Query: 170 KPLLLIE 176
KP+L+IE
Sbjct: 799 KPVLIIE 805
>gi|355686466|gb|AER98067.1| excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Mustela putorius furo]
Length = 116
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE-DY 283
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A ++
Sbjct: 3 SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNKPQPDAATAVAVTADSEALPE 62
Query: 284 TDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 63 SEKYNPGPQDFLLKMPGV 80
>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
Length = 769
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 34 YQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVP-----TEQDG 88
+ CA E +++ Q+ E+ +S+L R +KT++A +Q G
Sbjct: 501 WSCAHKEKRMQSNMQQWQEN------MSELNRANNE-----NDKTDIASEFRSEEEQQTG 549
Query: 89 VSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDL 148
+S +E VI+D RE RS + L K G I T+ VGDYI+S + +ERKS D
Sbjct: 550 LSDFSDEEVT-VILDQREIRSTVARSLEKLGFNIVVKTLEVGDYIVSDRVAIERKSTEDF 608
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ SL ++ Q+ + Y KP+L+IE
Sbjct: 609 VNSLLDRHIFRQISDLAGAYEKPILIIE 636
>gi|330835833|ref|YP_004410561.1| ERCC4 domain-containing protein [Metallosphaera cuprina Ar-4]
gi|329567972|gb|AEB96077.1| ERCC4 domain-containing protein [Metallosphaera cuprina Ar-4]
Length = 228
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ VD REF+S +P LL + G + +SVGDY++S + VERKS+ DLI S+ R +
Sbjct: 3 RIYVDSREFQSGIPDLLKELGAILFTQQLSVGDYVVSEGVAVERKSVYDLINSIYDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPF 209
Q+ ++ Y K +L+E + + G L ++++D N F
Sbjct: 63 DQLSRLREAYTKAFILVEGNLETAKSVSGKSKLFNSALISAVVDYDVNVLF 113
>gi|408381096|ref|ZP_11178646.1| Hef nuclease [Methanobacterium formicicum DSM 3637]
gi|407816361|gb|EKF86923.1| Hef nuclease [Methanobacterium formicicum DSM 3637]
Length = 799
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE +S + L G+ +EP + V DY +SP + VERKS D + SL RLY
Sbjct: 556 VQVDHRESKSGVTRGLSNLGVKVEPTNLPVADYQISPQVAVERKSTQDFVSSLMDKRLYK 615
Query: 160 QVQQMCRHYAKPLLLIE 176
Q Q++ ++ KPL+++E
Sbjct: 616 QAQELVENFQKPLIILE 632
>gi|84784047|gb|ABC61988.1| Rad1-like protein [Trichomonas vaginalis]
Length = 547
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 12 SLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFE 71
+ P VIF++ + ++R++E+Y S+ V + + Y E+ E A + + E + F
Sbjct: 425 TFDPDFVIFWDVTLLSVRRLEIYNTRASK-NVTGYALCYDEANEMTAMETSIENENQIFT 483
Query: 72 YLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGD 131
LI + + ++ + V T E ++VD REFRS +P+ L K G I P I+VGD
Sbjct: 484 KLISKLSTISKTPLEPFVVTNRE-----IVVDDREFRSAMPLALLKAGFKITPSVITVGD 538
Query: 132 YILSPDICV 140
Y+L+ DI +
Sbjct: 539 YVLTKDIVI 547
>gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg]
gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
Length = 736
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+ Y + IR ++ ++ + ++ +E Y S +R+EK E L
Sbjct: 443 VVMYEPVPSEIRMIQRRGRTGRRRSGRMVVLMTEKTRDEAYYYSSIRKEKTMKESL--RG 500
Query: 78 TNMAVPTEQDGVSTEPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILS 135
+M + G PE R + VD RE S + L K G+ E T+SVGDY +S
Sbjct: 501 GSMKIELTPLGF---PETDGERPFIYVDSREVNSRVLRELRKMGVDFELRTLSVGDYQVS 557
Query: 136 PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
D +ERK+ D +GS+ RLY Q + M ++ P+++IE
Sbjct: 558 DDTVIERKTTQDFLGSIMDKRLYRQARNMVENFKHPVMIIE 598
>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
Length = 780
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134
Q KT +Q ++ +E + VD RE R+ + L K G+ ++ + +GDYI+
Sbjct: 544 QNKTENKEDEDQSRITDFEDELKLTIFVDPRETRAGIARFLEKAGVDLKLQNLEIGDYIV 603
Query: 135 SPDICVERKSISDLIGSLQSGR--LYTQVQQMCRHYAKPLLLIEFD 178
S IC+ERK+++D + +L + R L+ Q+ +M Y KPLL+IE D
Sbjct: 604 SDKICIERKTVTDFLDTLVNKRRNLFEQIHRMKSEYEKPLLVIEGD 649
>gi|448721282|ref|ZP_21703850.1| Hef nuclease [Halobiforma nitratireducens JCM 10879]
gi|445778400|gb|EMA29349.1| Hef nuclease [Halobiforma nitratireducens JCM 10879]
Length = 808
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 24/128 (18%)
Query: 83 PTEQDGVS-------TEPEESCG-----RVIVDMREFRSELPVLLHKRG-LYIEPVTISV 129
PT++D EP E G ++ D RE + + L KR + I+ T+ V
Sbjct: 567 PTDEDSSEDEIEAGQVEPPEPSGDGDAIEIVADQREMDANIARDLSKRDDIEIDLETLEV 626
Query: 130 GDYILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQG 187
GDY+LS + VERKS++D + SL G ++ QV M RHY++P++++E D
Sbjct: 627 GDYVLSDRVVVERKSVADFVDSLVGGDRSMFEQVGAMARHYSRPIVIVEGD--------- 677
Query: 188 NYYLSRDI 195
Y RDI
Sbjct: 678 GLYEQRDI 685
>gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H]
gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 738
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+ Y + IR ++ + K ++ + ++ +E Y S +R+E+ E L
Sbjct: 443 VVMYEPVPSEIRMIQRRGRTGRKRKGRMVVLITEKTRDEAYYYSSIRKERSMKENLRGGS 502
Query: 78 TNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPD 137
N+ V EP + D RE S + L K G+ E ++VGDY +S D
Sbjct: 503 VNVEV-----NPIMEPSGEGPFIYADSREVNSRVLRELKKIGVDFELKPLAVGDYQISED 557
Query: 138 ICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
+ERK+ D IGS+ RLY Q ++M +++ +P+++IE D
Sbjct: 558 TIIERKTTQDFIGSIIDKRLYKQAREMVKNFKRPVMIIEGD 598
>gi|399576326|ref|ZP_10770083.1| ercc4-like helicase [Halogranum salarium B-1]
gi|399239037|gb|EJN59964.1| ercc4-like helicase [Halogranum salarium B-1]
Length = 829
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 103 DMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYT 159
D RE S + L +R G++ T++VGDYILS + VERKS+SD + +L G ++
Sbjct: 622 DQRELDSNIARTLSQRDGVHTRLETLAVGDYILSDRVAVERKSVSDFLDTLTGGDRSMFE 681
Query: 160 QVQQMCRHYAKPLLLIE 176
QV+ M RHY++P++++E
Sbjct: 682 QVRDMSRHYSRPVVIVE 698
>gi|429191672|ref|YP_007177350.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
gi|448325183|ref|ZP_21514580.1| Hef nuclease [Natronobacterium gregoryi SP2]
gi|429135890|gb|AFZ72901.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
gi|445616172|gb|ELY69802.1| Hef nuclease [Natronobacterium gregoryi SP2]
Length = 803
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L KR G+ + T+ VGDY+LS + VERKS++D + SL G
Sbjct: 589 VVADQREMDANIARDLSKRDGIEVRLETLEVGDYVLSDRVIVERKSVADFVDSLVGGDRS 648
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 649 MFEQVGAMARHYSRPIVIVE 668
>gi|448346947|ref|ZP_21535826.1| Hef nuclease [Natrinema altunense JCM 12890]
gi|445631284|gb|ELY84516.1| Hef nuclease [Natrinema altunense JCM 12890]
Length = 819
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 75 QEKTNMAVPTEQDGVSTEP--EESCGRVIVDMREFRSELPVLLHKRGLY-IEPVTISVGD 131
+E + A E+D + EP E V+ D RE + + L +R Y I T+ VGD
Sbjct: 580 EEPGDGAAEIEEDVETHEPHAEGDTVAVVADQREMDANIARDLSRREEYEISLETLDVGD 639
Query: 132 YILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
Y+LS + VERKS++D + SL G ++ QV M RHY++P+++IE
Sbjct: 640 YVLSDRVVVERKSVADFVDSLVGGDRSVFEQVGAMARHYSRPIVVIE 686
>gi|432329297|ref|YP_007247441.1| ERCC4-like helicase [Aciduliprofundum sp. MAR08-339]
gi|432136006|gb|AGB05275.1| ERCC4-like helicase [Aciduliprofundum sp. MAR08-339]
Length = 753
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSL 152
EE + VD REFRS+ V+ H Y I P + +GDY++S + VERK + D + SL
Sbjct: 540 EEDKPELYVDTREFRSD--VVKHLSEKYRIVPRQLEIGDYLISDRMIVERKRVDDFLESL 597
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIE 176
+ GRL++Q+ +M R+Y P+L+IE
Sbjct: 598 KDGRLFSQILEMRRNYPIPILIIE 621
>gi|448354594|ref|ZP_21543350.1| Hef nuclease [Natrialba hulunbeirensis JCM 10989]
gi|445637482|gb|ELY90632.1| Hef nuclease [Natrialba hulunbeirensis JCM 10989]
Length = 833
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 75 QEKTNMAVPTEQDGVST-EP--EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVG 130
+E + +E D V T EP E ++ D RE + + L +R + + T+ VG
Sbjct: 591 EETADGESDSEADNVETHEPSAEGDAIEIVADQREMDANIARDLSRREEIEVRLETLDVG 650
Query: 131 DYILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGN 188
DY+LS + VERKS++D + SL G ++ QV M RHYA+P++++E D
Sbjct: 651 DYVLSDRVVVERKSVADFVDSLVGGDRSVFEQVGAMARHYARPIVVVEGD---------G 701
Query: 189 YYLSRDI 195
Y RDI
Sbjct: 702 LYEQRDI 708
>gi|354609912|ref|ZP_09027868.1| ERCC4 domain protein [Halobacterium sp. DL1]
gi|353194732|gb|EHB60234.1| ERCC4 domain protein [Halobacterium sp. DL1]
Length = 815
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 86 QDGVSTEPEESCGR---VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
+DGV+ G V+VD RE S + L KR + T+SVGDY+LS + VE
Sbjct: 584 EDGVTARASSDDGETVEVVVDQRELDSNIARDLSKRENVETRLETLSVGDYVLSDRVAVE 643
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
RK+ D + +L G L+ Q + + RHY +P+LL+E D G+ Y R++
Sbjct: 644 RKTHGDFMDTLLGGDRSLFEQAKDLTRHYTRPVLLLEGD--------GDLYAERNV 691
>gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099]
gi|448282943|ref|ZP_21474225.1| Hef nuclease [Natrialba magadii ATCC 43099]
gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099]
gi|445575558|gb|ELY30033.1| Hef nuclease [Natrialba magadii ATCC 43099]
Length = 829
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 84 TEQDGVST-EP--EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDIC 139
+E D V T EP E ++ D RE + + L +R + + T+ VGDY+LS +
Sbjct: 596 SETDNVETHEPSAEGDAIEIVADQREMDANIARDLSRREEIEVRLETLDVGDYVLSDRVV 655
Query: 140 VERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFD 178
VERKS++D + SL G ++ QV M RHYA+P++++E D
Sbjct: 656 VERKSVADFVDSLVGGDRSVFEQVGAMARHYARPIVVVEGD 696
>gi|448475812|ref|ZP_21603167.1| Hef nuclease [Halorubrum aidingense JCM 13560]
gi|445816030|gb|EMA65939.1| Hef nuclease [Halorubrum aidingense JCM 13560]
Length = 825
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 60 LSDLRREKKAFEYLIQ--EKTNMAVPTEQDG-----VSTEPEESCGRVIVDMREFRSELP 112
L+D E +A E E T+ A +E D V+T E ++VD RE S +
Sbjct: 567 LTDFAEEARASEESADDGEATDEAEASEGDNDADGVVATAGVEDGVEIVVDQRELDSSIA 626
Query: 113 VLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQVQQMCRHYA 169
L R GL T++VGDY+LS + VERKS +D + S L + R L+ QV ++ R YA
Sbjct: 627 KSLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDADRSLFEQVGELSRAYA 686
Query: 170 KPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
+P++++E N Y RDI A ++FD
Sbjct: 687 RPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 720
>gi|448357031|ref|ZP_21545738.1| Hef nuclease [Natrialba chahannaoensis JCM 10990]
gi|445650204|gb|ELZ03130.1| Hef nuclease [Natrialba chahannaoensis JCM 10990]
Length = 835
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 84 TEQDGVST-EP--EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDIC 139
+E D V T EP E ++ D RE + + L +R + + T+ VGDY+LS +
Sbjct: 602 SETDNVETHEPSAEGDAIEIVADQREMDANIARDLSRREEIEVRLETLDVGDYVLSDRVV 661
Query: 140 VERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
VERKS++D + SL G ++ QV M RHYA+P++++E D Y RDI
Sbjct: 662 VERKSVADFVDSLVGGDRSVFEQVGAMARHYARPIVVVEGD---------GLYEQRDI 710
>gi|448307318|ref|ZP_21497216.1| Hef nuclease [Natronorubrum bangense JCM 10635]
gi|445595986|gb|ELY50083.1| Hef nuclease [Natronorubrum bangense JCM 10635]
Length = 810
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 85 EQDGVSTEPEESCGR-----VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDI 138
+ DG S E E ++ D RE + + L KR + I T+ VGDY+LS +
Sbjct: 578 DDDGTSVETHEPHAEGDLIEIVADQREMDATIARELSKREQIEIRLETLDVGDYVLSDRV 637
Query: 139 CVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
VERKS++D + SL G ++ QV M RHY++P++++E D Y RDI
Sbjct: 638 VVERKSVADFVDSLVDGDRSVFEQVGAMARHYSRPIVVVEGD---------GLYEQRDI 687
>gi|448315775|ref|ZP_21505414.1| Hef nuclease [Natronococcus jeotgali DSM 18795]
gi|445610534|gb|ELY64304.1| Hef nuclease [Natronococcus jeotgali DSM 18795]
Length = 814
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R Y + T+ VGDY+LS + VERKS++D + SL G
Sbjct: 602 VVADQREMDANIARELSRRETYEVRLETLEVGDYVLSDRVAVERKSVADFVDSLVGGDRS 661
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHYA+P++++E
Sbjct: 662 VFEQVGAMSRHYARPIVIVE 681
>gi|435849257|ref|YP_007311507.1| ERCC4-like helicase [Natronococcus occultus SP4]
gi|433675525|gb|AGB39717.1| ERCC4-like helicase [Natronococcus occultus SP4]
Length = 814
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 87 DGVSTEPEESCGRV--IVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERK 143
D + EP RV + D RE + + L +R Y + T+ VGDY+LS + VERK
Sbjct: 587 DVATHEPHAEGDRVEVVADQREMDANIARELSRRESYEVRLETLEVGDYVLSDRVAVERK 646
Query: 144 SISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
S++D + SL G ++ QV M RHYA+P++++E
Sbjct: 647 SVADFVDSLVGGDRSVFEQVGAMSRHYARPIVVVE 681
>gi|410721664|ref|ZP_11360996.1| ERCC4-like helicase [Methanobacterium sp. Maddingley MBC34]
gi|410598574|gb|EKQ53144.1| ERCC4-like helicase [Methanobacterium sp. Maddingley MBC34]
Length = 780
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE +S + L G+ +EP ++ V DY +SP + VERKS D + SL RLY
Sbjct: 535 VYVDHRESKSGVIRELSNLGVKVEPKSLPVADYQISPQVAVERKSTHDFVSSLMDKRLYK 594
Query: 160 QVQQMCRHYAKPLLLIE 176
Q +++ + KPL+++E
Sbjct: 595 QAEELVEKFEKPLIILE 611
>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
Length = 806
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISD----LIGSLQS 154
++ D RE + + L R G+ + T++VGDY+LS + VERKS+SD L+GS +S
Sbjct: 594 IVADQRELDANIARDLSAREGVDVRLETLAVGDYVLSDRVAVERKSVSDFLDTLVGSDRS 653
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHYA+P+++IE D
Sbjct: 654 --MFEQVGDMNRHYARPVVIIEGD 675
>gi|448342391|ref|ZP_21531342.1| Hef nuclease [Natrinema gari JCM 14663]
gi|445625768|gb|ELY79122.1| Hef nuclease [Natrinema gari JCM 14663]
Length = 819
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R Y I T+ VGDY+LS + VERKS++D + SL G
Sbjct: 607 VVADQREMDANIARDLSRREAYEISLETLEVGDYVLSDRVVVERKSVADFVDSLVGGDRS 666
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 667 VFEQVGAMARHYSRPIVIVE 686
>gi|448320786|ref|ZP_21510271.1| Hef nuclease [Natronococcus amylolyticus DSM 10524]
gi|445605213|gb|ELY59143.1| Hef nuclease [Natronococcus amylolyticus DSM 10524]
Length = 818
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R Y I T+ VGDY+LS + VERKS++D + SL G
Sbjct: 606 VVADQREMDANIARELSRREEYEIRLETLEVGDYVLSDRVAVERKSVADFVDSLVGGDRS 665
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHYA+P++++E
Sbjct: 666 VFEQVGAMGRHYARPIVIVE 685
>gi|397772195|ref|YP_006539741.1| helicase domain protein [Natrinema sp. J7-2]
gi|397681288|gb|AFO55665.1| helicase domain protein [Natrinema sp. J7-2]
Length = 857
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R Y I T+ VGDY+LS + VERKS++D + SL G
Sbjct: 645 VVADQREMDANIARDLSRREAYEISLETLEVGDYVLSDRVVVERKSVADFVDSLVGGDRS 704
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P+++IE
Sbjct: 705 VFEQVGAMARHYSRPIVVIE 724
>gi|61680885|pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix
gi|61680886|pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix
gi|61680887|pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix
gi|61680888|pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix
Length = 214
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV VD+RE RS +P +L G+ + P + +GDY++S I VERK+ SD SL GRL+
Sbjct: 3 RVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLF 62
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q ++ HY +++E
Sbjct: 63 EQASRLAEHYETVFIIVE 80
>gi|61680877|pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna
gi|61680878|pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna
Length = 219
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV VD+RE RS +P +L G+ + P + +GDY++S I VERK+ SD SL GRL+
Sbjct: 10 RVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLF 69
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q ++ HY +++E
Sbjct: 70 EQASRLAEHYETVFIIVE 87
>gi|448337408|ref|ZP_21526486.1| Hef nuclease [Natrinema pallidum DSM 3751]
gi|445625583|gb|ELY78939.1| Hef nuclease [Natrinema pallidum DSM 3751]
Length = 815
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R Y I T+ VGDY+LS + VERKS++D + SL G
Sbjct: 603 VVADQREMDANIARDLSRREEYEISLETLDVGDYVLSDRVVVERKSVADFVDSLVGGDRS 662
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P+++IE
Sbjct: 663 VFEQVGAMARHYSRPIVVIE 682
>gi|255513551|gb|EET89817.1| ERCC4 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 222
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+IVD RE EL L + IE T+ +GDY++S +CVERK++ DL S+ SGR++
Sbjct: 11 IIVDQRERSKELLSRLAQHA-SIEMRTLEIGDYLISGKVCVERKTVHDLESSIISGRIFD 69
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ Y KPL+++E D
Sbjct: 70 QSERLKAAYEKPLVIVEGD 88
>gi|170290897|ref|YP_001737713.1| ERCC4 domain-containing protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170174977|gb|ACB08030.1| ERCC4 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 215
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+++D RE S + +L G+ +E I V DY++ D+CVERK++ D + S+ GRL+
Sbjct: 2 RIVMDDREPES-VERILKSNGIIVERKRIEVADYLIGADVCVERKTLEDFLRSIYDGRLF 60
Query: 159 TQVQQMCRHYAKPLLLIEFDH 179
QV++M R ++ L+L+E H
Sbjct: 61 DQVEEMMRCCSRILVLVEGSH 81
>gi|448304069|ref|ZP_21494014.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
gi|445592156|gb|ELY46348.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
Length = 811
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L KR + I T++VGDY+LS + VERKS++D + SL G
Sbjct: 599 IVADQREMDATIARELSKRERIEIRLETLAVGDYVLSDRVVVERKSVADFVDSLVDGDRS 658
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
++ QV M RHY++P++++E D Y RDI
Sbjct: 659 VFEQVGAMARHYSRPIVVVEGD---------GLYEQRDI 688
>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
Length = 833
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
P E+ V+T E V++D RE + + L +R G T+ VGDY+LS + VE
Sbjct: 604 PDEEGTVATAGGEEAVEVVIDQRELDASIGRDLSRRDGFETRLETLDVGDYVLSDRVVVE 663
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFD 178
RK+ISD + +L G ++ QV+ R+Y +P++++E D
Sbjct: 664 RKTISDFLDTLTGGDRSMFEQVKDDARYYDRPVVILEGD 702
>gi|448737900|ref|ZP_21719932.1| Hef nuclease [Halococcus thailandensis JCM 13552]
gi|445802761|gb|EMA53063.1| Hef nuclease [Halococcus thailandensis JCM 13552]
Length = 811
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 84 TEQDGV-STEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
T+ +GV +T + ++VD RE + + L R T++VGDY+LS + VE
Sbjct: 582 TDDEGVVATAAGDDGVEIVVDQRELDASIARDLSTREDCETRLETLAVGDYVLSDRVVVE 641
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFD 178
RKS+SD + +L G L+ QV RHYA+P++LIE D
Sbjct: 642 RKSVSDFLDTLTGGDRSLFEQVGDAARHYARPVVLIEGD 680
>gi|448732248|ref|ZP_21714529.1| Hef nuclease [Halococcus salifodinae DSM 8989]
gi|445804821|gb|EMA55051.1| Hef nuclease [Halococcus salifodinae DSM 8989]
Length = 816
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 90 STEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDL 148
+ + EES +++D RE S + L R G T++VGDY+LS + VERKS++D
Sbjct: 595 AADAEEST-EIVIDQRELDSSIARDLSTREGAETRLETLAVGDYVLSDRVVVERKSVADF 653
Query: 149 IGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
+ +L G L+ QV RHYA+P+++IE
Sbjct: 654 LDTLTGGDRSLFEQVGDASRHYARPVVVIE 683
>gi|448401335|ref|ZP_21571571.1| Hef nuclease [Haloterrigena limicola JCM 13563]
gi|445666598|gb|ELZ19257.1| Hef nuclease [Haloterrigena limicola JCM 13563]
Length = 810
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 74 IQEKTNMAVPTEQDG-VSTEPEESCGR---VIVDMREFRSELPVLLHKRG-LYIEPVTIS 128
+QE + T++DG V T + G ++ D RE + + L +R + I T++
Sbjct: 568 LQEFGDTEADTDEDGEVETHEPHAEGDTIGIVADQREMDANIARDLSRREEIEISLETLA 627
Query: 129 VGDYILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
VGDY+LS + VERKS++D + SL G ++ QV M RHY++P++++E
Sbjct: 628 VGDYVLSDRVVVERKSVADFVDSLVGGDRSVFEQVGAMARHYSRPIVVVE 677
>gi|302348186|ref|YP_003815824.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
gi|302328598|gb|ADL18793.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
Length = 252
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV D+RE S +P LL G+ + + GDYI+ PDI VERK+ D + SL GRL+
Sbjct: 13 RVYADVREEASGVPSLLESLGVLVIRKQLPEGDYIIPPDIVVERKNAKDFVSSLFDGRLF 72
Query: 159 TQVQQMCRHYAKPLLLIEFDHNK 181
Q +M Y + +IE D ++
Sbjct: 73 DQASRMRNDYEEVFYIIEGDFSR 95
>gi|448726759|ref|ZP_21709151.1| Hef nuclease [Halococcus morrhuae DSM 1307]
gi|445793805|gb|EMA44376.1| Hef nuclease [Halococcus morrhuae DSM 1307]
Length = 806
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 84 TEQDGV-STEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
T+ +GV +T + ++VD RE + + L R T++VGDY+LS + VE
Sbjct: 577 TDDEGVVATAAGDEGVEIVVDQRELDASIARDLSTREDCETRLETLAVGDYVLSDRVVVE 636
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFD 178
RKS+SD + +L G L+ QV RHYA+P++LIE D
Sbjct: 637 RKSVSDFLDTLTGGDRSLFEQVGDAARHYARPVVLIEGD 675
>gi|374633076|ref|ZP_09705443.1| ERCC4-type nuclease [Metallosphaera yellowstonensis MK1]
gi|373524560|gb|EHP69437.1| ERCC4-type nuclease [Metallosphaera yellowstonensis MK1]
Length = 232
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D+RE +S +P +L + G+ + ++VGDY++S D+ VERK++ DL+ S+ R +
Sbjct: 3 RIYADVREKQSGVPEILKELGVVVIYEQLTVGDYVISNDVVVERKNVIDLVNSIFDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIEFD 178
Q++++ Y + +LLIE D
Sbjct: 63 DQLERLTSSYREAILLIEGD 82
>gi|448731379|ref|ZP_21713679.1| Hef nuclease [Halococcus saccharolyticus DSM 5350]
gi|445792132|gb|EMA42744.1| Hef nuclease [Halococcus saccharolyticus DSM 5350]
Length = 816
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 78 TNMAVPTEQD--GV---STEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGD 131
T++ E+D GV +T E +++D RE S + L R G T++VGD
Sbjct: 577 TDVGDADEEDEAGVVATATADAEDETEIVIDQRELDSSIARDLSTREGTETRLETLAVGD 636
Query: 132 YILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
Y+LS + VERKS+SD + +L G ++ QV RHYA+P+++IE
Sbjct: 637 YVLSDRVVVERKSVSDFLDTLTGGDRSVFEQVGDASRHYARPVVVIE 683
>gi|253742785|gb|EES99474.1| Hypothetical protein GL50581_3310 [Giardia intestinalis ATCC 50581]
Length = 880
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 85 EQDGVSTEPEESCGRVIVDMREFRSELPVLLH--KRGLYIEPVTISVGDYILSPDICVER 142
E+D VS +P + +D RE RS +PV L +GL + +++GDY+LS VER
Sbjct: 630 EKDSVS-KPSSPQRMLYIDNRELRSLVPVELFVLSKGLRLIVRQLTLGDYLLSSTTAVER 688
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIE 202
KS DLI SL+S RL Q++++ ++ L+ + +L I+
Sbjct: 689 KSEQDLISSLRSDRLEDQLERLNAQFSTSYLMCAIPSERSHDL-------------VRID 735
Query: 203 FDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262
+N+ S + A+K +TA+L L +P +R++WS+ A L LK
Sbjct: 736 IQNNQS---------STNTASKPLSLTARLFRLLRTYPTVRILWSTDT-TFAPLLMRLKM 785
Query: 263 G---RDEPSAE 270
R EP E
Sbjct: 786 ACIKRGEPELE 796
>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
gi|448287417|ref|ZP_21478629.1| Hef nuclease [Halogeometricum borinquense DSM 11551]
gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
gi|445572297|gb|ELY26838.1| Hef nuclease [Halogeometricum borinquense DSM 11551]
Length = 843
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++VD RE S + L R G+ T++VGDY+LS + VERKS+SD + +L G
Sbjct: 632 IVVDQRELDSNIAKDLSTRDGIETRLETLAVGDYVLSDRVAVERKSVSDFLDTLTGGDRS 691
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
L+ Q+ + R YA+P+L++E
Sbjct: 692 LFEQIGDLSRAYARPILILE 711
>gi|238583698|ref|XP_002390324.1| hypothetical protein MPER_10421 [Moniliophthora perniciosa FA553]
gi|215453607|gb|EEB91254.1| hypothetical protein MPER_10421 [Moniliophthora perniciosa FA553]
Length = 120
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAI 291
+ LLTL FP+LR+IWSS PY TA +F +LK+ R EP A +IG + + NAA
Sbjct: 1 IVLLTLTFPRLRIIWSSSPYATADIFKDLKKERPEPDPVKAVAIGADEDPEAGAGVNAAA 60
Query: 292 EDFISKLPGM 301
E+ + PG+
Sbjct: 61 EELLRSFPGI 70
>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 756
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+ VD REFRS + L + I VGDYI+S I +ERK + D + SL+ GRL++
Sbjct: 545 IYVDTREFRSNVVKYLSE-NYSIVAKQFEVGDYIISDRIAIERKKVDDFLDSLKDGRLFS 603
Query: 160 QVQQMCRHYAKPLLLIE 176
Q+ +M R+Y P+L+IE
Sbjct: 604 QMVEMRRNYEVPILIIE 620
>gi|15897631|ref|NP_342236.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
P2]
gi|284174956|ref|ZP_06388925.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
98/2]
gi|384434245|ref|YP_005643603.1| ERCC4 domain-containing protein [Sulfolobus solfataricus 98/2]
gi|6015747|emb|CAB57574.1| ATP-dependent RNA helicase, eIF-4A family [Sulfolobus solfataricus
P2]
gi|13813898|gb|AAK41026.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
P2]
gi|261602399|gb|ACX92002.1| ERCC4 domain protein [Sulfolobus solfataricus 98/2]
Length = 233
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P LL + G+ + ++V DY+++ D+ VERKS++DL+ S+ R +
Sbjct: 4 RIYADDREKASGIPELLKELGITVIFSQLTVADYVITDDVAVERKSVNDLVNSVFDKRFF 63
Query: 159 TQVQQMCRHYAKPLLLIEFDHN 180
Q+ ++ Y P+LL+E D N
Sbjct: 64 DQISRLSEVYRFPILLVEGDIN 85
>gi|347524330|ref|YP_004781900.1| ERCC4 domain containing protein [Pyrolobus fumarii 1A]
gi|343461212|gb|AEM39648.1| ERCC4 domain protein [Pyrolobus fumarii 1A]
Length = 221
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV VD RE S +P L + G+ + + VGDY++S +I ERK++ DL+ S+ GRL+
Sbjct: 5 RVYVDEREKGSGVPEALAEMGVAVIYQRLDVGDYLVSDEIVFERKTVDDLVRSVFDGRLF 64
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGN 188
Q +++ Y KP++++E +K +E G
Sbjct: 65 DQARRLAETYPKPVIIVEGRFDKLWEKTGK 94
>gi|448381161|ref|ZP_21561428.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
gi|445663513|gb|ELZ16261.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
Length = 815
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + ++ T+ VGDY+LS + VERKS++D + SL G
Sbjct: 603 IVADQREMDANIARDLSRREAIEVQLETLDVGDYVLSDRVVVERKSVADFVDSLVGGDRS 662
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 663 VFEQVGAMARHYSRPIVIVE 682
>gi|118431455|ref|NP_147940.2| repair endonuclease XPF [Aeropyrum pernix K1]
gi|116062779|dbj|BAA80433.2| repair endonuclease XPF [Aeropyrum pernix K1]
Length = 248
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD+RE RS +P +L G+ + P + +GDY++S I VERK+ SD SL GRL+
Sbjct: 15 VYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLFE 74
Query: 160 QVQQMCRHYAKPLLLIE 176
Q ++ HY +++E
Sbjct: 75 QASRLAEHYETVFIIVE 91
>gi|392350970|ref|XP_003750806.1| PREDICTED: DNA repair endonuclease XPF-like [Rattus norvegicus]
Length = 596
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 49/70 (70%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ LR+
Sbjct: 527 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALRK 586
Query: 66 EKKAFEYLIQ 75
EK+AFE LI+
Sbjct: 587 EKEAFEKLIR 596
>gi|345004287|ref|YP_004807140.1| ERCC4 domain-containing protein [halophilic archaeon DL31]
gi|344319913|gb|AEN04767.1| ERCC4 domain protein [halophilic archaeon DL31]
Length = 790
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++VD RE S + L +R G+ T++VGDY+LS + VERKS+SD + +L G
Sbjct: 579 IVVDQRELDSPIAKALSRREGVETRLETLAVGDYVLSDRVAVERKSVSDFLDTLTGGDRS 638
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV + R YA+P++++E
Sbjct: 639 MFEQVGDLARAYARPVVILE 658
>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
Length = 752
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 29/193 (15%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKV-------------KVFFMQYGESVEEQAY 59
L TSV D+ ++ V +Y+ SE+++ ++F + +++E Y
Sbjct: 427 LISTSVAEEGIDIPSVDYVILYEPVPSEIRMIQRKGRTGRKHSGEMFILMTKGTLDESYY 486
Query: 60 LSDLRREKK-------------AFEYLIQEKTNMAV-PTEQDGVSTEPEESCGRVI--VD 103
S R+EK E + +K ++ V + ++ + T+ V+ VD
Sbjct: 487 WSSQRKEKAMRNNVYNSHKKEITLENYVAKKEDVKVYDSNKNKIDTQEVSDEAEVVIYVD 546
Query: 104 MREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQ 163
RE S + L K ++ T+ VGDY ++ DI +ERK+I D S+ RLY Q ++
Sbjct: 547 YREKNSNIMRELDKINCEVKVRTMGVGDYQITDDIIIERKTIDDFSKSITDKRLYQQAKE 606
Query: 164 MCRHYAKPLLLIE 176
+ + KPL++IE
Sbjct: 607 LSNNCQKPLMIIE 619
>gi|433592991|ref|YP_007282487.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
gi|448335437|ref|ZP_21524582.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
gi|433307771|gb|AGB33583.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
gi|445616961|gb|ELY70569.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
Length = 813
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + ++ T+ VGDY+LS + VERKS++D + SL G
Sbjct: 601 IVADQREMDANIARDLSRREEIEVQLETLDVGDYVLSDRVVVERKSVADFVDSLVGGDRS 660
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 661 VFEQVGAMARHYSRPIVIVE 680
>gi|422593934|ref|ZP_16668226.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330984243|gb|EGH82346.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 613
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 16 TSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQA--YLSDLRREKKAFEYL 73
+SV +Y + + E Q + + M+ G + A + + RE+K+ L
Sbjct: 306 SSVDYYTVAIGREVKTEEVQPVINGLLSMGLIMRVGHGMYAVADPEVGSVWRERKS---L 362
Query: 74 IQE-KTNMAVPTEQDGVSTE--------PEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
I+E + M++ TE ++E E+ ++ DMRE RS + L +E
Sbjct: 363 IKEGEGGMSIKTEGALTASELDFSHLVVDEKKIIKIYADMREQRSGVVKALQA----MEN 418
Query: 125 VTISVG-----DYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
V + +G DYILSP++ VERKS +D + S+ SGR++ QV +M + +P++LIE D
Sbjct: 419 VEVIIGGLPCGDYILSPEVAVERKSANDFVTSVMSGRVFEQVGRMKLDFLRPMVLIEGD 477
>gi|336252885|ref|YP_004595992.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336874|gb|AEH36113.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
Length = 831
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 85 EQDGVST-EP--EESCGRVIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICV 140
E D V T EP E ++ D RE + + L +R + + T+ VGDY+LS + V
Sbjct: 599 EADDVETHEPSAEGDAIEIVADQREMDANIARDLSRRDEIEVSLETLDVGDYVLSDRVVV 658
Query: 141 ERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
ERKS++D + SL G ++ Q+ M RHY++P++++E
Sbjct: 659 ERKSVADFVDSLVGGDRSVFEQIGAMARHYSRPIVVVE 696
>gi|229584887|ref|YP_002843389.1| ERCC4 domain-containing protein [Sulfolobus islandicus M.16.27]
gi|238619854|ref|YP_002914680.1| ERCC4 domain-containing protein [Sulfolobus islandicus M.16.4]
gi|385773355|ref|YP_005645921.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
HVE10/4]
gi|385775993|ref|YP_005648561.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
REY15A]
gi|228019937|gb|ACP55344.1| ERCC4 domain protein [Sulfolobus islandicus M.16.27]
gi|238380924|gb|ACR42012.1| ERCC4 domain protein [Sulfolobus islandicus M.16.4]
gi|323474741|gb|ADX85347.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
REY15A]
gi|323477469|gb|ADX82707.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
HVE10/4]
Length = 233
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P LL + G+ + +SV DY++ D VERKS++DL+ S+ R +
Sbjct: 4 RIYADDREKASGIPELLKELGITVIFSQLSVADYVIGEDAAVERKSVNDLVNSVFDKRFF 63
Query: 159 TQVQQMCRHYAKPLLLIEFDHNK 181
Q+ ++ Y P+L++E D N+
Sbjct: 64 DQISRLSEVYNFPMLIVEGDINE 86
>gi|448312646|ref|ZP_21502386.1| Hef nuclease [Natronolimnobius innermongolicus JCM 12255]
gi|445600842|gb|ELY54842.1| Hef nuclease [Natronolimnobius innermongolicus JCM 12255]
Length = 820
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVST-EP--EESCGRVIVDMREFR 108
E VE Q L D EK + ++ T D V T EP E ++ D RE
Sbjct: 559 EGVESQPGLQDFSGEKTESDDGDGGESERGDDT--DDVETHEPHAEGDAIEIVADQREMD 616
Query: 109 SELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQVQQMC 165
+ + L +R + I T+ VGDY+ S + VERKS++D + SL G ++ QV M
Sbjct: 617 ANIARDLSRREEIEIRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRSVFEQVGAMA 676
Query: 166 RHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
RHY++P++++E D Y RDI
Sbjct: 677 RHYSRPIVIVEGD---------GLYEQRDI 697
>gi|227830380|ref|YP_002832160.1| ERCC4 domain-containing protein [Sulfolobus islandicus L.S.2.15]
gi|229579198|ref|YP_002837596.1| ERCC4 domain-containing protein [Sulfolobus islandicus Y.G.57.14]
gi|229582050|ref|YP_002840449.1| ERCC4 domain-containing protein [Sulfolobus islandicus Y.N.15.51]
gi|284997886|ref|YP_003419653.1| ERCC4 domain-containing protein [Sulfolobus islandicus L.D.8.5]
gi|227456828|gb|ACP35515.1| ERCC4 domain protein [Sulfolobus islandicus L.S.2.15]
gi|228009912|gb|ACP45674.1| ERCC4 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012766|gb|ACP48527.1| ERCC4 domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445781|gb|ADB87283.1| ERCC4 domain protein [Sulfolobus islandicus L.D.8.5]
Length = 233
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P LL + G+ + +SV DY++ D VERKS++DL+ S+ R +
Sbjct: 4 RIYADDREKASGIPELLKELGITVIFSQLSVADYVIGEDAAVERKSVNDLVNSVFDKRFF 63
Query: 159 TQVQQMCRHYAKPLLLIEFDHNK 181
Q+ ++ Y P+L++E D N+
Sbjct: 64 DQISRLSEVYNFPMLIVEGDINE 86
>gi|156937851|ref|YP_001435647.1| ERCC4 domain-containing protein [Ignicoccus hospitalis KIN4/I]
gi|156566835|gb|ABU82240.1| ERCC4 domain protein [Ignicoccus hospitalis KIN4/I]
Length = 246
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 99 RVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
RV D RE RS +P +L K+ G+ + + V DY +S + +ERKS+SD + SL GRL
Sbjct: 16 RVYADERERRSGVPEILAKKYGVIVTFKNMPVADYAVSDRVGIERKSVSDFLKSLADGRL 75
Query: 158 YTQVQQMCRHYAKPLLLIE 176
+ Q +++ Y KP +++E
Sbjct: 76 FNQARRLKEVYQKPFIIVE 94
>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
gi|167727974|emb|CAP14762.1| ATP-dependent RNA helicase/nuclease Hef [Halobacterium salinarum
R1]
Length = 784
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 15/101 (14%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISD----LIGSLQS 154
V+VD RE S + L KR G+ T++VGDY++S + VERKS SD L+GS +S
Sbjct: 570 VVVDQRELDSTIARELSKRDGVETRLETLAVGDYVVSDRVAVERKSHSDFMDTLLGSERS 629
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
++ Q +++ R Y +P+L++E D G+ Y R++
Sbjct: 630 --IFEQAKELARQYTRPVLVVEGD--------GDLYAERNV 660
>gi|332796520|ref|YP_004458020.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1]
gi|332694255|gb|AEE93722.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1]
Length = 230
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ VD RE S +P +L G+ + + V DY+L+ + VERKS+SDL+ S+ R +
Sbjct: 3 RIYVDNREKNSGIPEILKDIGISVIIEQLDVADYVLADGVAVERKSVSDLVNSVFDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFD 204
Q+ ++ Y LLIE + N+ E+ + ++++D
Sbjct: 63 DQINRLTSAYETSFLLIEGNLNRIREITEKWKAINSALISIIVDYD 108
>gi|395646185|ref|ZP_10434045.1| helicase domain-containing protein [Methanofollis liminatans DSM
4140]
gi|395442925|gb|EJG07682.1| helicase domain-containing protein [Methanofollis liminatans DSM
4140]
Length = 738
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 18 VIFYNADVAAIRQVEVY-QCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE--KKAFEYLI 74
V+FY A + IR ++ + +S V F G + E Y+S R +K L
Sbjct: 447 VVFYEAVPSEIRSIQRKGRTGRSGTGRIVVFTTKGTADEVYRYVSQQRERSMQKGIRALG 506
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134
T V+ EPE + VD RE S + +L GL+I + VGDY +
Sbjct: 507 GGSTGKGQTNFGSFVAAEPEGPS--ITVDDRETSSRVAEVLSDLGLHIALTRLEVGDYAV 564
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRD 194
I VERK++ D +L L QV+ + +P+L++E D G+ Y +RD
Sbjct: 565 GDRIVVERKTVQDFADTLVDRDLLGQVRALAAAAPRPVLIVEGD--------GDLYAARD 616
Query: 195 I 195
I
Sbjct: 617 I 617
>gi|227827683|ref|YP_002829463.1| ERCC4 domain-containing protein [Sulfolobus islandicus M.14.25]
gi|227459479|gb|ACP38165.1| ERCC4 domain protein [Sulfolobus islandicus M.14.25]
Length = 233
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P LL G+ + +SV DY++ D VERKS++DL+ S+ R +
Sbjct: 4 RIYADDREKASGIPELLKDLGITVIFSQLSVADYVIGEDAAVERKSVNDLVNSVFDKRFF 63
Query: 159 TQVQQMCRHYAKPLLLIEFDHNK 181
Q+ ++ Y P+L++E D N+
Sbjct: 64 DQISRLSEVYNFPMLIVEGDINE 86
>gi|448302430|ref|ZP_21492412.1| Hef nuclease [Natronorubrum tibetense GA33]
gi|445581659|gb|ELY36011.1| Hef nuclease [Natronorubrum tibetense GA33]
Length = 818
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + I T+ VGDY+ S + VERKS++D + SL G
Sbjct: 604 IVADQREMDANIARDLSRRAEIEIRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRS 663
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 664 IFEQVGAMARHYSRPIVIVE 683
>gi|335438600|ref|ZP_08561337.1| Hef nuclease [Halorhabdus tiamatea SARL4B]
gi|334891007|gb|EGM29264.1| Hef nuclease [Halorhabdus tiamatea SARL4B]
Length = 834
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 85 EQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERK 143
E+ V+T E V++D RE + + L +R G T+ VGDY+LS + VERK
Sbjct: 607 EETTVATADGEDTIEVVIDQRELDASIGRDLSRRDGFETRLETLEVGDYVLSDRVVVERK 666
Query: 144 SISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIEFD 178
+ISD + +L G ++ QV+ R+Y +P++++E D
Sbjct: 667 TISDFLDTLTGGDRSMFEQVKDDARYYDRPVVILEGD 703
>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
gi|109624743|emb|CAJ51150.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi DSM
16790]
Length = 851
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 49 QYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFR 108
Q E+ E+ Y +D+ +TN AV + E ++VD RE
Sbjct: 600 QSAETASEEVYSTDI-------------ETNTAVSESPPTPDVDISEDTIEIVVDQRELD 646
Query: 109 SELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR--LYTQVQQMC 165
S +P L R + T++VGDY+LS + VERKS +D + +L G L+ Q +
Sbjct: 647 STVPRSLSTRDAIQTRLETLAVGDYVLSDRVAVERKSATDFLDTLLDGNRSLFEQTGDLV 706
Query: 166 RHYAKPLLLIE 176
R Y +P+L++E
Sbjct: 707 RAYGRPVLILE 717
>gi|448330470|ref|ZP_21519751.1| Hef nuclease [Natrinema versiforme JCM 10478]
gi|445611517|gb|ELY65266.1| Hef nuclease [Natrinema versiforme JCM 10478]
Length = 815
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + + T+ VGDY+LS + VERKS++D + SL G
Sbjct: 603 IVADQREMDANIARDLSRREEIEVSLETLDVGDYVLSDRVVVERKSVADFVDSLVGGDRS 662
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 663 VFEQVGAMARHYSRPIVVVE 682
>gi|448389152|ref|ZP_21565564.1| Hef nuclease [Haloterrigena salina JCM 13891]
gi|445669056|gb|ELZ21671.1| Hef nuclease [Haloterrigena salina JCM 13891]
Length = 820
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 608 VVADQREMDANIARDLSRREEIEVRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRS 667
Query: 157 LYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHY++P++++E D
Sbjct: 668 VFEQVGAMARHYSRPIVIVEGD 689
>gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M]
gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M]
Length = 667
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
VIFY +AIR ++ +V + +++E+A + +R+EKK +E L EK
Sbjct: 390 VIFYEPIPSAIRAIQRKGRTGRLNYGEVIILYSKNTLDEKALWASIRKEKKMYEIL--EK 447
Query: 78 TNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPD 137
+ V +++ E ++I D RE S + L K G+ ++ + VGDYI+ D
Sbjct: 448 LSKEVKPKKEQTLNEVLGFRYKIIADQREQNSLVVDALKKLGIGVKIENLEVGDYIVG-D 506
Query: 138 ICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
+ +ERK+I D + S+ R++ Q+ ++ K LL++E + + F
Sbjct: 507 VVIERKTIRDFVDSIIDNRIWDQMNKLS-QLDKKLLILEGEEDPYF 551
>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
gi|76556687|emb|CAI48259.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas pharaonis DSM
2160]
Length = 845
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 85 EQDGVSTE---------PEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYIL 134
E DG T+ PE ++ D RE S + L R G+ T++VGDY+L
Sbjct: 607 EADGTDTDEAGTVATAAPEGETVEIVADQRELDSHIARDLSMRDGVETRLETLAVGDYVL 666
Query: 135 SPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
S + VERK++ D + +L G ++ QV RHY +P+++IE
Sbjct: 667 SDRVVVERKAVEDFLETLVGGDRSMFEQVGAAARHYGRPVVIIE 710
>gi|284166979|ref|YP_003405258.1| ERCC4 domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
Length = 820
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
V+ D RE + + L +R + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 608 VVADQREMDANIARDLSRREEIEVRLETLEVGDYVCSDRVVVERKSVADFVDSLVGGDRS 667
Query: 157 LYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHY++P++++E D
Sbjct: 668 VFEQVGAMARHYSRPIVIVEGD 689
>gi|429217590|ref|YP_007175580.1| ERCC4-type nuclease [Caldisphaera lagunensis DSM 15908]
gi|429134119|gb|AFZ71131.1| ERCC4-type nuclease [Caldisphaera lagunensis DSM 15908]
Length = 243
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 41/213 (19%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV D RE S +P +L GL + + GDY++ +I +ERKS +D + SL GRL+
Sbjct: 17 RVYADSREEASGVPKILESLGLMVIRRQLEEGDYLIPDNIIIERKSSNDFVKSLFDGRLF 76
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q ++M Y + ++E D K +Y +
Sbjct: 77 EQAKKMSSKYNNIIYIVEGDFRKSLL------------------------------FYKN 106
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS-IGQ 277
R+ +S+ I+ L L + K++++WS +TA+ + E + EPS EV S I +
Sbjct: 107 REKQIQSALIS-----LVLEY-KVKVLWSLDQLSTAE-YIESIARKSEPSKEVNESPILK 159
Query: 278 TPNEDYTDRYNAAIEDFISKLPGMAEWSRARTL 310
P + ++ I + PG+ E S + L
Sbjct: 160 KPKINDNRQWQLYI---LQSFPGIGEKSAEKIL 189
>gi|448351177|ref|ZP_21539986.1| Hef nuclease [Natrialba taiwanensis DSM 12281]
gi|445634861|gb|ELY88035.1| Hef nuclease [Natrialba taiwanensis DSM 12281]
Length = 834
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 622 IVADQREMDANIARELSRREEIEVRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRS 681
Query: 157 LYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHY++P++++E D
Sbjct: 682 VFEQVGAMARHYSRPIVVVEGD 703
>gi|448364130|ref|ZP_21552724.1| Hef nuclease [Natrialba asiatica DSM 12278]
gi|445645018|gb|ELY98025.1| Hef nuclease [Natrialba asiatica DSM 12278]
Length = 834
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 622 IVADQREMDANIARELSRREEIAVRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRS 681
Query: 157 LYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHY++P++++E D
Sbjct: 682 VFEQVGAMARHYSRPIVVVEGD 703
>gi|448366932|ref|ZP_21554963.1| Hef nuclease [Natrialba aegyptia DSM 13077]
gi|445653841|gb|ELZ06701.1| Hef nuclease [Natrialba aegyptia DSM 13077]
Length = 834
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L +R + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 622 IVADQREMDANIARELSRREEIEVRLETLDVGDYVCSDRVVVERKSVADFVDSLVGGDRS 681
Query: 157 LYTQVQQMCRHYAKPLLLIEFD 178
++ QV M RHY++P++++E D
Sbjct: 682 VFEQVGAMARHYSRPIVVVEGD 703
>gi|340344309|ref|ZP_08667441.1| ERCC4 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519450|gb|EGP93173.1| ERCC4 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 207
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 114 LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLL 173
+L GL +E T+ +GDYI++P+ VERKSI DL+ S+ GRL+ Q ++ H+ P++
Sbjct: 1 MLKSVGLNLEMKTLPIGDYIVAPETVVERKSIRDLLSSVFDGRLFDQCSRLKEHFEFPIV 60
Query: 174 LIEFDHNKPFELQGN 188
L+E + ++ E+ N
Sbjct: 61 LMEGNVDEIEEITDN 75
>gi|452206230|ref|YP_007486352.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas moolapensis
8.8.11]
gi|452082330|emb|CCQ35585.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas moolapensis
8.8.11]
Length = 835
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVE 141
P + EP V+ D RE + + L R G+ T+ VGDY+LS + VE
Sbjct: 605 PDAPESAVAEPAAEGVEVVADQRELDAHIARDLSTREGIETRLETLEVGDYVLSDRVVVE 664
Query: 142 RKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
RK++ D + +L G L+ QV RHYA+P+++IE
Sbjct: 665 RKAVEDFLETLVGGDRSLFEQVGAAARHYARPVVIIE 701
>gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|448297701|ref|ZP_21487744.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|445578571|gb|ELY32974.1| Hef nuclease [Halalkalicoccus jeotgali B3]
Length = 799
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 84 TEQDGVST-EPEESCG-RVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICV 140
+E+ ++T EP+ G ++ D RE + + L R G+ T++VGDY+LS + V
Sbjct: 566 SEEGAIATPEPDPDGGIEIVADQRELDATIARDLSTREGISTRLETLAVGDYVLSDRVAV 625
Query: 141 ERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
ERKS+SD + +L G ++ QV M R Y++P+++IE
Sbjct: 626 ERKSVSDFLDTLVGGDRSVFEQVGDMARFYSRPVVIIE 663
>gi|297736738|emb|CBI25917.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPS------AEVASSIGQTPNE 281
I +KL LL LHFP+LR++WS + TA++F LK +DEP V S G N+
Sbjct: 14 IISKLSLLVLHFPRLRIVWSRSLHATAEIFASLKANQDEPDEAKAIRVGVPSEEGIVEND 73
Query: 282 DYTDRYNAAIEDFISKLPGMAE 303
+ YN + + + +LPG+ +
Sbjct: 74 VRAENYNTSAVELLRRLPGVTD 95
>gi|448655325|ref|ZP_21682177.1| Hef nuclease [Haloarcula californiae ATCC 33799]
gi|445765774|gb|EMA16912.1| Hef nuclease [Haloarcula californiae ATCC 33799]
Length = 851
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 71 EYLIQEKTNMAVPTEQDGVSTEPE---ESCGR--------VIVDMREFRSELPVLLHKR- 118
E +++ N E +T+ E S GR ++ D RE S + L R
Sbjct: 599 EATTRDEGNAGTADEGTAATTDDEGTVASAGRDSEDDPVEIVADQRELDSNIARDLSTRD 658
Query: 119 GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQVQQMCRHYAKPLLLIE 176
G+ T++VGDY+LS + VERK+++D + +L G ++ QV R+Y +P+++IE
Sbjct: 659 GIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRSMFEQVGDATRNYGRPVVIIE 718
Query: 177 FD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNKPFEL 211
+ H+K +QG L+ D A L D ++ +L
Sbjct: 719 GEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDETADL 760
>gi|385802402|ref|YP_005838802.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
gi|339727894|emb|CCC39004.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
Length = 855
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 72 YLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVG 130
Y +TN AV + E ++VD RE S +P L R + T++VG
Sbjct: 614 YSTDTETNTAVSESPPTPDVDISEDTIEIVVDQRELDSTVPRSLSTRDAIQTRLETLAVG 673
Query: 131 DYILSPDICVERKSISDLIGSLQSGR--LYTQVQQMCRHYAKPLLLIE 176
DY+LS + VERKS +D + +L G L+ Q + R Y +P+L++E
Sbjct: 674 DYVLSDRVAVERKSATDFLDTLLDGNRSLFEQTGDLVRAYGRPVLILE 721
>gi|452209972|ref|YP_007490086.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Tuc01]
gi|452099874|gb|AGF96814.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Tuc01]
Length = 845
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 90 STEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
S E +S ++I+D RE +S + L + G+ + + + +GDYI+S + VERK D
Sbjct: 624 SGESSDSLLKIIIDHRETKSGVAKTLDRLGMELRFMALEIGDYIVSDRLAVERKRTDDFA 683
Query: 150 GSLQSGR--LYTQVQQMCRHYAKPLLLIE 176
SL G+ L+ Q+ + R Y KP+L+IE
Sbjct: 684 CSLIDGKRNLFAQLSDLARVYEKPVLIIE 712
>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Go1]
Length = 864
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 90 STEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
S E +S ++I+D RE +S + L + G+ + + + +GDYI+S + VERK D
Sbjct: 643 SGESSDSLLKIIIDHRETKSGVAKTLDRLGMELRFMALEIGDYIVSDRLAVERKRTDDFA 702
Query: 150 GSLQSGR--LYTQVQQMCRHYAKPLLLIE 176
SL G+ L+ Q+ + R Y KP+L+IE
Sbjct: 703 CSLIDGKRNLFAQLSDLARVYEKPVLIIE 731
>gi|409723155|ref|ZP_11270483.1| Hef nuclease [Halococcus hamelinensis 100A6]
gi|448722439|ref|ZP_21704974.1| Hef nuclease [Halococcus hamelinensis 100A6]
gi|445789439|gb|EMA40124.1| Hef nuclease [Halococcus hamelinensis 100A6]
Length = 827
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++VD RE + + L R T+ VGDY+LS + VERKS+SD + +L G
Sbjct: 615 IVVDQRELDASIARDLSTREDCETRLETLEVGDYVLSDRVVVERKSVSDFLDTLTGGDRS 674
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
L+ QV RHYA+P+++IE
Sbjct: 675 LFDQVGDAARHYARPVVVIE 694
>gi|70606419|ref|YP_255289.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449066631|ref|YP_007433713.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius N8]
gi|449068905|ref|YP_007435986.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius Ron12/I]
gi|68567067|gb|AAY79996.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035139|gb|AGE70565.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius N8]
gi|449037413|gb|AGE72838.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius Ron12/I]
Length = 236
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE S +P L + G + ++V DY++S I +ERKS+ DL+ S+ R +
Sbjct: 3 RIYADYREKASNVPDFLRELGAVVIFENLTVADYVISETIGIERKSVEDLVSSVFDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN---- 214
Q+ ++ Y +P +LIE D ++ + + +I++D F L
Sbjct: 63 DQLSRLSESYKEPYILIEGDLSQIRFITTKWKAVNSALVSAIIDYDLRVLFSLNKKDSAE 122
Query: 215 --YYLSRDIAAKSS 226
Y L+ I+AKS+
Sbjct: 123 VLYKLAEKISAKSN 136
>gi|383620096|ref|ZP_09946502.1| Hef nuclease [Halobiforma lacisalsi AJ5]
gi|448696209|ref|ZP_21697770.1| Hef nuclease [Halobiforma lacisalsi AJ5]
gi|445783897|gb|EMA34721.1| Hef nuclease [Halobiforma lacisalsi AJ5]
Length = 828
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L KR + + T+ VGDY+ S + VERKS++D + SL G
Sbjct: 614 IVADQREMDATIARDLSKREEIDVRLETLEVGDYVCSDRVVVERKSVADFVDSLVGGDRS 673
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 674 MFEQVGAMARHYSRPIVIVE 693
>gi|305663906|ref|YP_003860194.1| ERCC4 domain-containing protein [Ignisphaera aggregans DSM 17230]
gi|304378475|gb|ADM28314.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230]
Length = 239
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE S +P +L RG+ + VGDYI+S +ERK+ D I SL GRL+
Sbjct: 4 VYVDERERNSRVPQILSSRGITTIFKMLDVGDYIISEKTGIERKTAEDFIKSLLDGRLFD 63
Query: 160 QVQQMCRHYAKPLLLIE 176
Q ++ + KP+++IE
Sbjct: 64 QASRLQETFEKPIIIIE 80
>gi|448489210|ref|ZP_21607584.1| Hef nuclease [Halorubrum californiensis DSM 19288]
gi|445695155|gb|ELZ47266.1| Hef nuclease [Halorubrum californiensis DSM 19288]
Length = 814
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 20/116 (17%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR- 156
V+VD RE S + L R L T++VGDY+LS + VERKS +D + S L S R
Sbjct: 603 VVVDQRELDSSIAKDLSTRDELVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRS 662
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ QV ++ R YA+P++++E N Y RDI A ++FD
Sbjct: 663 MFEQVGELSRAYARPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 709
>gi|433640051|ref|YP_007285811.1| ERCC4-like helicase [Halovivax ruber XH-70]
gi|433291855|gb|AGB17678.1| ERCC4-like helicase [Halovivax ruber XH-70]
Length = 819
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L KR + T+SVGDY+ S + VERKS +D + SL G
Sbjct: 607 IVADQREMDANIARDLSKRDDAEVRLETLSVGDYVCSDRVVVERKSTADFVDSLVGGDRS 666
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 667 VFEQVGAMARHYSRPVVVVE 686
>gi|336476206|ref|YP_004615347.1| helicase domain-containing protein [Methanosalsum zhilinae DSM
4017]
gi|335929587|gb|AEH60128.1| helicase domain protein [Methanosalsum zhilinae DSM 4017]
Length = 776
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY + IR ++ + + +V + + +E Y S + +EKK +
Sbjct: 452 VLFYEPVPSEIRSIQRKGRTGRKHRGRVVVLVTRGTRDEAYYWSSVNKEKKMQSNMKHLT 511
Query: 78 TNMAVPTEQDGVSTEP-------------------------------EESCG--RVIVDM 104
M T+Q V T P ++ C RVI D
Sbjct: 512 GLMNGNTQQSAVETNPSLSAYDNGNNNNKTIESNTADKTGQCNLCEFDKECDQIRVIADQ 571
Query: 105 REFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQM 164
RE RS + L + +E T+ VGDY++S +ERK +D + SL L+ Q+ +
Sbjct: 572 REGRSTVLRSLDRLNTALEIKTLEVGDYLVSDRCAIERKDATDFVSSLIDRTLFEQISNL 631
Query: 165 CRHYAKPLLLIE 176
R Y++P+L+IE
Sbjct: 632 ARVYSRPVLIIE 643
>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
Length = 842
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V VD RE S + L G+ ++ T++V DY +S D+ +ERK+ SD + S+ RL+
Sbjct: 623 VYVDSREGNSRVIRALDTIGVKVKVNTMAVADYQVSDDVAIERKTASDFVDSIVDKRLFK 682
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q + M + KP+L++E D
Sbjct: 683 QAKAMMEEFKKPILILEGD 701
>gi|448632932|ref|ZP_21673930.1| Hef nuclease [Haloarcula vallismortis ATCC 29715]
gi|445752289|gb|EMA03713.1| Hef nuclease [Haloarcula vallismortis ATCC 29715]
Length = 837
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDYILS + VERK+++D + +L G
Sbjct: 625 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYILSDRVVVERKTVADFMDTLTGGDRS 684
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 685 MFEQVGDATRNYGRPVVVIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 742
Query: 208 PFEL 211
+L
Sbjct: 743 TADL 746
>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
Length = 821
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR-- 156
R+++D RE +S + L + G+ + + VGDY++S + VERK D SL G+
Sbjct: 609 RIVIDHRETKSGVAKTLDRLGMGLSFAVLEVGDYVVSDRLAVERKRTDDFTSSLIDGKRN 668
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
L+ Q+ + R Y KP+L+IE
Sbjct: 669 LFAQLSDLARVYEKPVLIIE 688
>gi|448376033|ref|ZP_21559317.1| Hef nuclease [Halovivax asiaticus JCM 14624]
gi|445658051|gb|ELZ10874.1| Hef nuclease [Halovivax asiaticus JCM 14624]
Length = 819
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 100 VIVDMREFRSELPVLLHKRG-LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE + + L KR + T+SVGDY+ S + VERKS +D + SL G
Sbjct: 607 IVADQREMDANIARDLSKRDDAEVRLETLSVGDYVCSDRVVVERKSTADFVDSLVGGDRS 666
Query: 157 LYTQVQQMCRHYAKPLLLIE 176
++ QV M RHY++P++++E
Sbjct: 667 VFEQVGAMARHYSRPVVVVE 686
>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
ATCC 43049]
Length = 852
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 640 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 699
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 700 MFEQVGDATRNYGRPVVIIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 757
Query: 208 PFEL 211
+L
Sbjct: 758 TADL 761
>gi|383319514|ref|YP_005380355.1| ERCC4-like helicase [Methanocella conradii HZ254]
gi|379320884|gb|AFC99836.1| ERCC4-like helicase [Methanocella conradii HZ254]
Length = 765
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 18 VIFYNADVAAIRQVEVY-QCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAF------ 70
VIFY + IR ++ + ++ V V + G + +E Y +EK+ +
Sbjct: 458 VIFYEPVPSEIRTIQRRGRTGRNAVGRVVVLISKG-TRDEGTYRVSQAKEKRMYRTMRDM 516
Query: 71 ------EYLIQEKTNMAVPTEQDGVST--EPEESCGRVIVDMREFRSELPVLLHKRGLYI 122
E L+Q +A P EQ + +P E V VD RE RS + L + +
Sbjct: 517 KDGQRMEELLQ-NAQVAAPAEQRSLEEFEKPPERV-EVYVDAREMRSAVVKNLEGMSVSL 574
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSL-QSGR-LYTQVQQMCRHYAKPLLLIE 176
T+ VGDY+LS +CVERK+ D + +L +GR L+ QV M Y +P+L+IE
Sbjct: 575 NVKTLEVGDYVLSDRVCVERKTADDFLDTLFGAGRSLFEQVIAMKHSYMRPILVIE 630
>gi|448680086|ref|ZP_21690525.1| Hef nuclease [Haloarcula argentinensis DSM 12282]
gi|445769734|gb|EMA20807.1| Hef nuclease [Haloarcula argentinensis DSM 12282]
Length = 839
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 627 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 686
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 687 MFEQVGDATRNYGRPVVIIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 744
Query: 208 PFEL 211
+L
Sbjct: 745 TADL 748
>gi|448683610|ref|ZP_21692327.1| Hef nuclease [Haloarcula japonica DSM 6131]
gi|445783749|gb|EMA34574.1| Hef nuclease [Haloarcula japonica DSM 6131]
Length = 832
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 620 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 679
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 680 MFEQVGDATRNYGRPVVVIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 737
Query: 208 PFEL 211
+L
Sbjct: 738 TADL 741
>gi|448638549|ref|ZP_21676399.1| Hef nuclease [Haloarcula sinaiiensis ATCC 33800]
gi|445763328|gb|EMA14527.1| Hef nuclease [Haloarcula sinaiiensis ATCC 33800]
Length = 836
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 624 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 683
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 684 MFEQVGDATRNYGRPVVVIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 741
Query: 208 PFEL 211
+L
Sbjct: 742 TADL 745
>gi|289192001|ref|YP_003457942.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
gi|288938451|gb|ADC69206.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
Length = 783
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++IVD+RE + LLH IE T+ VGDY+LS + VERK+ D + S+ RL+
Sbjct: 580 KIIVDVRE--KNMAKLLHNYA-NIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLF 636
Query: 159 TQVQQMCRHYAKPLLLIEFDH 179
+Q++ + R KPLL++E D+
Sbjct: 637 SQLKNL-RKVEKPLLIVEGDN 656
>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
Length = 765
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL--QSGRL 157
+ VDMRE RS + L + T+ VGDY+LS +CVERK+ D + +L L
Sbjct: 552 IYVDMREMRSAVVKNLEDMKASLSIRTLDVGDYVLSDRVCVERKTTDDFLDTLFGADRSL 611
Query: 158 YTQVQQMCRHYAKPLLLIEFD 178
+ Q+ M Y +PLLLIE D
Sbjct: 612 FEQIIAMKHAYMRPLLLIEGD 632
>gi|448664269|ref|ZP_21684072.1| Hef nuclease [Haloarcula amylolytica JCM 13557]
gi|445774914|gb|EMA25928.1| Hef nuclease [Haloarcula amylolytica JCM 13557]
Length = 845
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 633 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 692
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 693 MFEQVGDATRNYGRPVVVIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 750
Query: 208 PFEL 211
+L
Sbjct: 751 TADL 754
>gi|344213340|ref|YP_004797660.1| Hef nuclease/ATP-dependent RNA helicase-like protein eIF-4A
[Haloarcula hispanica ATCC 33960]
gi|343784695|gb|AEM58672.1| Hef nuclease / ATP-dependent RNA helicase-like protein eIF-4A
[Haloarcula hispanica ATCC 33960]
Length = 836
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--R 156
++ D RE S + L R G+ T++VGDY+LS + VERK+++D + +L G
Sbjct: 624 IVADQRELDSNIARDLSTRDGIETRLETLAVGDYVLSDRVVVERKTVADFMDTLTGGDRS 683
Query: 157 LYTQVQQMCRHYAKPLLLIEFD--------HNKPFELQGNYY-LSRDIAAKFLIEFDHNK 207
++ QV R+Y +P+++IE + H+K +QG L+ D A L D ++
Sbjct: 684 MFEQVGDATRNYGRPVVVIEGEDLFGARNVHHKA--IQGALASLAVDFGASVLRTSDEDE 741
Query: 208 PFEL 211
+L
Sbjct: 742 TADL 745
>gi|448417002|ref|ZP_21579105.1| Hef nuclease [Halosarcina pallida JCM 14848]
gi|445678685|gb|ELZ31173.1| Hef nuclease [Halosarcina pallida JCM 14848]
Length = 838
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQV 161
RE S + L R G+ T++VGDY+LS + VERKS+SD + +L G L+ QV
Sbjct: 632 RELDSSIAKDLSTRDGVETRLETLAVGDYVLSDRVAVERKSVSDFLDTLTGGDRSLFEQV 691
Query: 162 QQMCRHYAKPLLLIE 176
+ R YA+PLL++E
Sbjct: 692 GDLSRAYARPLLILE 706
>gi|261403123|ref|YP_003247347.1| Hef nuclease [Methanocaldococcus vulcanius M7]
gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
M7]
Length = 783
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++I+D+RE + LLH IE T+ VGDYILS + VERK+ D + S+ RL+
Sbjct: 581 KIIIDVRE--RNMAKLLHNYA-NIELKTLEVGDYILSDRVVVERKTAEDFVNSIIDKRLF 637
Query: 159 TQVQQMCRHYAKPLLLIEFDH 179
Q++ + R +PLL+IE D+
Sbjct: 638 NQLKNL-RKVERPLLIIEGDN 657
>gi|374853826|dbj|BAL56724.1| DNA-binding protein [uncultured prokaryote]
Length = 241
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+++VD RE RS +P L G + + VGDY+LSP + VERK+ +D + L R
Sbjct: 18 KILVDCREARSGVPDRLRSLGAEVLEAALPVGDYVLSPRVGVERKTAADFVAGLVRKRFA 77
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q +++ + + +P+ L+E
Sbjct: 78 LQAERLRQAFERPVYLVE 95
>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
Length = 759
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 20/181 (11%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY + IR ++ + + +V + E+ +E Y S + +E+K + + +
Sbjct: 448 VLFYEPVPSEIRSIQRKGRTARKQEGRVVVLVTKETRDEAYYWSSVSKERKMQDNMKYLQ 507
Query: 78 TNMAVPTEQDGVSTEPEESCGR--------------------VIVDMREFRSELPVLLHK 117
M+ E S + E + + V+VD RE +S + L K
Sbjct: 508 DIMSQNNENTSGSGKSENNQKKLFDFESETNVDTGQPPDFLNVLVDQRETKSTVVRSLEK 567
Query: 118 RGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
+ T+ + DYI+S I +ERKS D + SL L+ QV + R Y KP L++E
Sbjct: 568 LDVDFTIKTLEIADYIVSDRIAIERKSSVDFVNSLIDKTLFEQVSNLSRMYKKPCLILEG 627
Query: 178 D 178
D
Sbjct: 628 D 628
>gi|159042267|ref|YP_001541519.1| ERCC4 domain-containing protein [Caldivirga maquilingensis IC-167]
gi|157921102|gb|ABW02529.1| ERCC4 domain protein [Caldivirga maquilingensis IC-167]
Length = 211
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 39/161 (24%)
Query: 102 VDMREFRSELPVL--LHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+D RE+ + V+ + + G + T++VGDY++S ++ VERK D + S+ GRL+
Sbjct: 1 MDSREYETAQAVVNAVKELGCRVLVSTLTVGDYVVSSEVAVERKRAMDFVNSIIDGRLFQ 60
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q + Y +P ++IE D ++G +SR+ L++ +
Sbjct: 61 QASNLIEAYQEPYIIIEGDLWSTVSVRG---ISRNALIGALVKVSRS------------- 104
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFEL 260
LRLIW+ ++TAQ + L
Sbjct: 105 ---------------------GLRLIWTRDEWDTAQALYSL 124
>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
5631]
Length = 736
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY A + IR ++ + + ++ + + +E + LR+E+ FE L
Sbjct: 443 VVFYEAIPSEIRSIQRKGRTGRKKEGRIVVLVTKGTRDEAYFYISLRKERAMFERL---- 498
Query: 78 TNMAVPTEQDGVSTEPEESCGR-----VIVDMREFRSELPVLLHKRGLYIEPVTISVG-- 130
++ ++ S E E G V VD RE RSE+ + LY E + VG
Sbjct: 499 RDLKFMLKRTQKSLE-EFKVGNLKDVTVYVDSREMRSEVV-----KKLY-EKANVRVGNF 551
Query: 131 --DYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
DY++S + +ERK+ D + S+ RL+ Q+ ++ +HY KP+L++E D
Sbjct: 552 NADYVVSDRVAIERKTADDFVDSIIDRRLFDQLIELKKHYLKPVLIVEGD 601
>gi|424814351|ref|ZP_18239529.1| ERCC4-like helicase [Candidatus Nanosalina sp. J07AB43]
gi|339757967|gb|EGQ43224.1| ERCC4-like helicase [Candidatus Nanosalina sp. J07AB43]
Length = 730
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 118/284 (41%), Gaps = 61/284 (21%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY +++R ++ + +V+ + E+ ++ Y + +KK ++Q+
Sbjct: 426 VVFYEPVPSSVRSIQRAGRTGRQESGEVYVL-IAENTRDEGYYWSAQHKKKNMNKVLQQL 484
Query: 78 TNMAVPT---------------EQDGVSTEPEESCG---RVIVDMREFRSELPVLLHKRG 119
N + EQD + +E G +IVD RE + + L K
Sbjct: 485 KNEEMENQVSSPQRSLNGFKSDEQDQNQEQVDEDYGDRVEIIVDDRE--NSVAKKLSKMD 542
Query: 120 LYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDH 179
+ ++ + V D+++S D VERK D + S+ RL+ Q+ +M + Y+ P+L+IE D
Sbjct: 543 VDVDKQRLEVADFLVSEDTAVERKQAEDFVDSILDSRLFDQIIEM-QDYSNPILIIEGD- 600
Query: 180 NKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
N Y RD+ + I L + + +
Sbjct: 601 ----------------------------------NLYSHRDVHPNA--IRGALATVAIDY 624
Query: 240 PKLRLIWSSGPYNTAQLFFEL-KQGRDEPSAEVASSIGQTPNED 282
++ ++WS G +TA+L L K+ +++ +A ++P D
Sbjct: 625 -EMAVLWSDGNKDTAELLNSLAKREQEDKDKNIAVRADKSPTTD 667
>gi|147920338|ref|YP_685889.1| Hef nuclease [Methanocella arvoryzae MRE50]
gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
subunit [Methanocella arvoryzae MRE50]
Length = 792
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL--QSGRL 157
V+ D RE RS++ L + G ++ T+ VGDY+LS +C+ERK+ D + ++ + +
Sbjct: 579 VLTDTREMRSQVVKKLEEHGAKLDFRTLEVGDYVLSDRVCIERKTTDDFLSTIFDANRNM 638
Query: 158 YTQVQQMCRHYAKPLLLIE 176
+ Q+ M + +P+L+IE
Sbjct: 639 FEQIINMKHEFLRPMLIIE 657
>gi|146302868|ref|YP_001190184.1| ERCC4 domain-containing protein [Metallosphaera sedula DSM 5348]
gi|145701118|gb|ABP94260.1| ERCC4 domain protein [Metallosphaera sedula DSM 5348]
Length = 230
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
R+ D RE +S +P LL G + +SVGDYI++ + VERK++ DL+ S+ R +
Sbjct: 3 RIYADTREKQSGIPDLLRDLGALVFLQQLSVGDYIVADGVAVERKNVFDLMNSVFDKRFF 62
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q++++ Y+K +L+E
Sbjct: 63 DQLERLREVYSKVFILVE 80
>gi|448451900|ref|ZP_21593072.1| Hef nuclease [Halorubrum litoreum JCM 13561]
gi|445810116|gb|EMA60148.1| Hef nuclease [Halorubrum litoreum JCM 13561]
Length = 825
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S+ G ++ Q+
Sbjct: 619 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDGDRSMFEQI 678
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 679 GELSRAYARPVMVVE---------GTNLYGQRDIEPNAIRGALASLAVDFD 720
>gi|448484173|ref|ZP_21605958.1| Hef nuclease [Halorubrum arcis JCM 13916]
gi|445820346|gb|EMA70172.1| Hef nuclease [Halorubrum arcis JCM 13916]
Length = 825
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S+ G ++ Q+
Sbjct: 619 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDGDRSMFEQI 678
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 679 GELSRAYARPVMVVE---------GTNLYGQRDIEPNAIRGALASLAVDFD 720
>gi|448508975|ref|ZP_21615651.1| Hef nuclease [Halorubrum distributum JCM 9100]
gi|448517616|ref|ZP_21617190.1| Hef nuclease [Halorubrum distributum JCM 10118]
gi|445696998|gb|ELZ49075.1| Hef nuclease [Halorubrum distributum JCM 9100]
gi|445705831|gb|ELZ57719.1| Hef nuclease [Halorubrum distributum JCM 10118]
Length = 825
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S+ G ++ Q+
Sbjct: 619 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDGDRSMFEQI 678
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 679 GELSRAYARPVMVVE---------GTNLYGQRDIEPNAIRGALASLAVDFD 720
>gi|448426589|ref|ZP_21583438.1| Hef nuclease [Halorubrum terrestre JCM 10247]
gi|445679469|gb|ELZ31936.1| Hef nuclease [Halorubrum terrestre JCM 10247]
Length = 825
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--RLYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S+ G ++ Q+
Sbjct: 619 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDGDRSMFEQI 678
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 679 GELSRAYARPVMVVE---------GTNLYGQRDIEPNAIRGALASLAVDFD 720
>gi|448433353|ref|ZP_21585874.1| Hef nuclease [Halorubrum tebenquichense DSM 14210]
gi|445686366|gb|ELZ38690.1| Hef nuclease [Halorubrum tebenquichense DSM 14210]
Length = 842
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ QV
Sbjct: 636 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQV 695
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 696 GELSRAYARPVMIVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 737
>gi|290791646|gb|EFD95305.1| hypothetical protein GL50803_5925 [Giardia lamblia ATCC 50803]
Length = 881
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 61/286 (21%)
Query: 17 SVIFYNADVAAIRQVEVY------QCAQSEVKVKVFFMQYGESVEEQAYLSDL-----RR 65
S+I A + A+R +E + Q+ +++ + ++ G Q++ ++
Sbjct: 541 SIICCGASIQAVRVLERLNFRYKQEAHQTPIQIPLIVIEGGA----QSFTTNYPILVNNV 596
Query: 66 EKKAFEYLIQEKTNMAV------PTEQD--GVSTEPEESCGRV-------IVDMREFRSE 110
E +A + L +M+V PTE D G+ T+ ++S G++ +D RE RS
Sbjct: 597 ESEALKVLHTASMHMSVSSYYNTPTEIDFTGIQTK-QQSPGKLENPQRLLYIDNRELRSV 655
Query: 111 LPVLLH--KRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
+PV L +GL + +++GDYILS VERKS DLI SL++ RL Q++++ +
Sbjct: 656 VPVELFVLSKGLRLIVRQLTLGDYILSSMTAVERKSEQDLISSLRNNRLEDQLERLNAQF 715
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAA-KSSD 227
L+ + + +I+ D Q N S IAA K
Sbjct: 716 PTFFLMCSIPSERSHD---------------MIQID------TQSNQ--STTIAASKPLG 752
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELK---QGRDEPSAE 270
+TA+L L + +R++WS+ A L LK R EP E
Sbjct: 753 LTARLFKLLRTYKSMRVLWSTDT-TFAPLLMRLKMTCMDRGEPELE 797
>gi|329766291|ref|ZP_08257838.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137193|gb|EGG41482.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 197
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 126 TISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFEL 185
T+ +GDYI++P+ VERKSI DL+ S+ GRL+ Q ++ H+ P++L+E + ++ E+
Sbjct: 3 TLPIGDYIVAPETVVERKSIRDLMSSVFDGRLFDQCSRLKEHFEFPIVLMEGNVDEIEEI 62
Query: 186 QGNYYLSRDIAAKFLIEF 203
N + + +I+F
Sbjct: 63 TENPMIFYGALSTVVIDF 80
>gi|448535918|ref|ZP_21622302.1| Hef nuclease [Halorubrum hochstenium ATCC 700873]
gi|445702727|gb|ELZ54668.1| Hef nuclease [Halorubrum hochstenium ATCC 700873]
Length = 821
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ QV
Sbjct: 615 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQV 674
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 675 GELSRAYARPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 716
>gi|124262836|ref|YP_001023306.1| helicase-associated endonuclease for fork-structured DNA
[Methylibium petroleiphilum PM1]
gi|124262082|gb|ABM97071.1| helicase-associated endonuclease for fork-structured DNA
[Methylibium petroleiphilum PM1]
Length = 216
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 93 PEESCGRVIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS 151
PE ++ D RE +P L + G+ +E + GD+I++P + VERK D S
Sbjct: 2 PESKSITIVADSRETVGGIPARLAQMPGVVVESAQLDSGDFIVAPGVVVERKRNHDFAAS 61
Query: 152 LQSGRLYTQVQQMCRHYAKPLLLIEFD-HN 180
+ GRL QV+ M + K ++LIE D HN
Sbjct: 62 ILDGRLMPQVKLMKAEFEKVVVLIEGDVHN 91
>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
Length = 749
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGS 151
EP+E +IVD RE ++ LL K GL I ++ VGDY+LS + +ERK+ DLI S
Sbjct: 534 EPDE-LPLIIVDSRE--RDMARLLEKTGLRIVLRSLEVGDYVLSERLGIERKTADDLIDS 590
Query: 152 LQSGR--LYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEF 203
+ L+ Q+ + R Y +PLL+IE + ++ N R I A ++F
Sbjct: 591 IIDPERDLFRQIGDLARTYDRPLLIIEGQNLYARQVHPNSV--RGILATIAVDF 642
>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
Length = 769
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 16 TSVIFYNADVAAIRQVEVYQCAQSEVKV-------------KVFFMQYGESVEEQAYLSD 62
TSV D+ ++ V +Y+ SE+++ ++F + + +E Y S
Sbjct: 443 TSVAEEGIDIPSVDLVVLYEPVPSEIRMIQRRGRTGRKNRGRMFILITKGTRDESYYWSS 502
Query: 63 LRREK-------KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLL 115
+ +EK K F + + + T + +E+ + D RE S + L
Sbjct: 503 INKEKQMKKQLNKNFNKDLTDFKPVKTKTNSEDAEKPADENRPIIYADSREGSSRVLREL 562
Query: 116 HKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175
+ + I+ +++V DY +S D+ +ERK+ +D + S+ RL+ Q +++ ++ KP+++I
Sbjct: 563 ERLNVDIKVKSLAVADYQVSDDVAIERKTNTDFVSSIMDKRLHKQAKELVDNFKKPVIII 622
Query: 176 E 176
E
Sbjct: 623 E 623
>gi|307595958|ref|YP_003902275.1| ERCC4 domain-containing protein [Vulcanisaeta distributa DSM 14429]
gi|307551159|gb|ADN51224.1| ERCC4 domain protein [Vulcanisaeta distributa DSM 14429]
Length = 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 100 VIVDMREFRS--ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
VIVD RE+ + E+ + + G + P + +GDY+L ++ VERK D I S+ GRL
Sbjct: 5 VIVDSREYETAEEVVKWIKRLGCNVIPRKLDIGDYVLPNNVGVERKRAMDFISSIVDGRL 64
Query: 158 YTQVQQMCRHYAKPLLLIEFD 178
+ Q +++ R + + ++IE D
Sbjct: 65 FEQSRELLRAFDRAYIIIEGD 85
>gi|222480951|ref|YP_002567188.1| Hef nuclease [Halorubrum lacusprofundi ATCC 49239]
gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ QV
Sbjct: 630 RELDSTIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQV 689
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 690 GELSRAYARPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 731
>gi|448407016|ref|ZP_21573448.1| Hef nuclease [Halosimplex carlsbadense 2-9-1]
gi|445676822|gb|ELZ29339.1| Hef nuclease [Halosimplex carlsbadense 2-9-1]
Length = 850
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 100 VIVDMREFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG--- 155
V+VD RE + + L + G+ T++VGDY+LS + VERK++SD + +L
Sbjct: 637 VVVDQRELDAAIAKDLSRTDGVVTRLETLAVGDYVLSDRVVVERKTVSDFLDTLTGDDER 696
Query: 156 RLYTQVQQMCRHYAKPLLLIE 176
L+ Q+ R+YA+P++++E
Sbjct: 697 SLFEQLTDAARYYARPVVVVE 717
>gi|448462984|ref|ZP_21597905.1| Hef nuclease [Halorubrum kocurii JCM 14978]
gi|445817487|gb|EMA67359.1| Hef nuclease [Halorubrum kocurii JCM 14978]
Length = 821
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ QV
Sbjct: 615 RELDSAIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQV 674
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 675 GELSRAYARPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 716
>gi|308159568|gb|EFO62095.1| Hypothetical protein GLP15_1931 [Giardia lamblia P15]
Length = 882
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 102 VDMREFRSELPVLLH--KRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+D RE RS +PV L +G+ + +++GDYILS VERKS DLI SL++ RL
Sbjct: 648 IDNRELRSIVPVELFVLSKGVRLIVRQLTLGDYILSSMTAVERKSEQDLISSLRNNRLED 707
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSR 219
Q++++ ++ L+ KP +I+ D +Q N S
Sbjct: 708 QLERLNAQFSTFFLMCSIPPEKPHN---------------IIQID------VQDNQ--ST 744
Query: 220 DIAA-KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQG---RDEPSAEVASS 274
IAA KS +TA+L L + + ++WS+ A L LK+ R EP E A +
Sbjct: 745 TIAASKSLSLTARLFKLMRTYKSMCILWSTDA-AFAPLLMRLKRACMDRGEPELEPADA 802
>gi|448460272|ref|ZP_21597097.1| Hef nuclease [Halorubrum lipolyticum DSM 21995]
gi|445807013|gb|EMA57099.1| Hef nuclease [Halorubrum lipolyticum DSM 21995]
Length = 827
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ QV
Sbjct: 621 RELDSAIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQV 680
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 681 GELSRAYARPVMVVE---------GTNLYGQRDIEPNAIRGALASLAVDFD 722
>gi|448441595|ref|ZP_21589202.1| Hef nuclease [Halorubrum saccharovorum DSM 1137]
gi|445688631|gb|ELZ40882.1| Hef nuclease [Halorubrum saccharovorum DSM 1137]
Length = 815
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 20/111 (18%)
Query: 105 REFRSELPVLLHKR-GLYIEPVTISVGDYILSPDICVERKSISDLIGS-LQSGR-LYTQV 161
RE S + L R GL T++VGDY+LS + VERKS +D + S L S R ++ Q+
Sbjct: 609 RELDSSIAKDLSTRDGLVTRLETLAVGDYVLSDRVAVERKSAADFVDSMLDSDRSMFEQI 668
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA--------AKFLIEFD 204
++ R YA+P++++E N Y RDI A ++FD
Sbjct: 669 GELSRAYARPVMVVE---------GTNLYGQRDIDPNAIRGALASLAVDFD 710
>gi|404451224|ref|ZP_11016195.1| ERCC4-type nuclease [Indibacter alkaliphilus LW1]
gi|403763163|gb|EJZ24144.1| ERCC4-type nuclease [Indibacter alkaliphilus LW1]
Length = 226
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++++D RE ++ + +L + + + + +GDY+L D+ VERKS+ D S++ GRL+
Sbjct: 14 QIVIDDREPQAIVDQILDFKNIIVRKERLPIGDYLLDSDLLVERKSVPDFCASVKDGRLF 73
Query: 159 TQVQQMCRHYAKPLLLIE 176
QV ++ +P L++E
Sbjct: 74 KQVAKLANSNVRPCLILE 91
>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
Length = 741
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
++VD RE +++ L ++ + +E T+ + DY++ + VERKS SD SL GRL
Sbjct: 544 IVVDSRELNTKVVEHLRRKPVVLERDTLELADYVVGEGVGVERKSESDFARSLLDGRLMD 603
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFE 184
Q ++M R + + ++++E + + E
Sbjct: 604 QAREMTREFDRAVIIVEGNPRREIE 628
>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
Length = 746
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY A + IR ++ + ++ + + +E Y + +R+EK + L + K
Sbjct: 443 VVFYEAVPSEIRAIQRKGRTGRAREGRIVVLITKGTRDEAYYWASMRKEKAMYLKLYELK 502
Query: 78 TNMAVPTEQDGVS------TEPEESCGRVI-VDMREFRSELPVLLHKRGLYIEPVTISVG 130
++ P Q + + PEE V+ VD RE S + L + G I+ + V
Sbjct: 503 ESLK-PRGQASLEDFAKPVSLPEEIPKAVVYVDSRESSSGIAKKLSRLGFSIKIQNLEVA 561
Query: 131 DYILSPDICVERKSISDLIGSL--QSGRLYTQVQQMCRHYAKPLLLIE 176
DY++S + +ERK+ D + S+ + +++Q+ ++ +HY +P+L+IE
Sbjct: 562 DYVVSDRVAIERKTTEDFVESIVNKDRDIFSQLVRLKKHYPRPVLIIE 609
>gi|256810024|ref|YP_003127393.1| Hef nuclease [Methanocaldococcus fervens AG86]
gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
Length = 767
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++IVD+RE + LLH +E T+ VGDY+LS + VERK+ D + S+ RL+
Sbjct: 565 KIIVDVRE--KNMAKLLHNYA-DVELKTLEVGDYVLSDRVIVERKTAEDFVNSIIDKRLF 621
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q++ + + KPLL+IE
Sbjct: 622 NQLKNL-KKVEKPLLIIE 638
>gi|260836711|ref|XP_002613349.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
gi|229298734|gb|EEN69358.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
Length = 2342
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 100 VIVDMREFRSELPVLLHKRGLY-IEPVTISVG--DYILSPDICVERKSISDLIGSLQSGR 156
V+VD RE S V+ R + I V +G DYILS + VERK++SD S +
Sbjct: 2123 VLVDSREIASSQQVVSSLRFHHDINAVVCQLGSCDYILSNRMGVERKTLSDFCNSTNREK 2182
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKP 182
L +VQ++C + KP L++E D KP
Sbjct: 2183 LVQRVQELCELFDKPCLIVEKDRVKP 2208
>gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
2088]
Length = 730
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
Query: 16 TSVIFYNADVAAIRQVEVYQCAQSEVKV------------KVFFMQYGESVEEQAY-LSD 62
TSV D+ A+ V +Y+ SE+++ + E ++AY S
Sbjct: 430 TSVAEEGIDIPAVDTVILYEPVPSEIRMIQRRGRTGRKRKGKMIVLISEGTRDEAYYWSS 489
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYI 122
+R+E K + L K + V ++ +E + D RE+ S + L K I
Sbjct: 490 IRKENKMKKQL---KRPIHVKFRKERKHKNKKEVV--IYADSREYNSGVLRELTKLNAKI 544
Query: 123 EPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ +++V DY +S ++ +ERK++ D I S+ RLY Q +++ + +P+L++E
Sbjct: 545 KIRSLAVADYQVSDEVGIERKTVDDFINSIIDKRLYKQAERLTEEFTRPVLILE 598
>gi|77024937|gb|ABA61364.1| ATP-dependent RNA helicase [uncultured marine group II
euryarchaeote HF70_59C08]
Length = 878
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 93 PEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSL 152
PE V +D RE +S L L + GL +E + + VGD +S I +ERK+ D + SL
Sbjct: 617 PESDGVIVSIDHREGKSALAARLRQEGLTVEVINLPVGDIRISDRILIERKTSRDFVDSL 676
Query: 153 QSGRLYTQVQQMCRHYAKPLLLIE 176
GRL Q ++ + +L++E
Sbjct: 677 LDGRLLDQATRLVGAAPRAMLILE 700
>gi|146344019|ref|YP_001201875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
gi|146187831|emb|CAM96160.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
Length = 233
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++ VD RE S +P L + G I + GDY+L ++ VERK+ +D S+ R
Sbjct: 3 KIFVDSREIPSRIPEALRELGAEIATGNLETGDYVLEANLVVERKTAADFCASIIDSRFI 62
Query: 159 TQVQQMCRHYAKPLLLIEFD 178
Q +M ++ K + LIE D
Sbjct: 63 NQANKMGLNFKKVIWLIEGD 82
>gi|422646293|ref|ZP_16709427.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330959841|gb|EGH60101.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 233
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++ VD RE S +P L + G I + GDY+L ++ VERK+ +D S+ R
Sbjct: 3 KIFVDSREIPSRIPEALRELGAEIATGNLETGDYVLEANLVVERKTAADFCASIIDSRFI 62
Query: 159 TQVQQMCRHYAKPLLLIEFD 178
Q +M ++ K + LIE D
Sbjct: 63 NQANKMGLNFRKVIWLIEGD 82
>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
Length = 761
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V+FY A + IR ++ + ++ + + +E Y + LR+EK ++ + + K
Sbjct: 441 VVFYEAVPSEIRAIQRKGRTGRGREGRIVVLITKGTRDEAYYYASLRKEKLMYDTVYRIK 500
Query: 78 TNMAVPTEQDGVSTEPEESCGRVI------VDMREFRSELPVLLHKRGLYIEPVTISVGD 131
+ E++ + ++ I VD RE +S + L + G ++ + VGD
Sbjct: 501 YELEKEIEKERLEKAETKTLLDFIASPLIYVDSREMKSGVVKKLIELGAKVKVEKLDVGD 560
Query: 132 YILSPDICVERKSISDLIGSL--QSGRLYTQVQQMCRHYAKPLLLIE 176
Y+LS + VERK++ D + SL + L+ + + + Y K LL+IE
Sbjct: 561 YVLSDRVAVERKTVEDFLESLINKERDLFGNLINLKKAYPKALLIIE 607
>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote KM3-136-D10]
Length = 928
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 38 QSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESC 97
Q E K+ + E++ + A +A E ++Q T AV D ++ E + C
Sbjct: 614 QEETKIDDHDLDIDENIAKLAV--------RAAEDIVQALTTEAV----DPLAHEADIPC 661
Query: 98 GRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
R++VD RE + + L +G+ ++ T+++GD+ + + VERK + D + SL GRL
Sbjct: 662 -RIVVDHRELNTTIAATLRLQGVDVDVQTLAIGDFQIGDRVVVERKRVRDFVDSLLDGRL 720
Query: 158 YTQVQQMCRHYAKPLLLIE 176
Q ++ +PLLLIE
Sbjct: 721 LEQAHRLIAAAPRPLLLIE 739
>gi|359416970|ref|ZP_09209211.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
gi|358032669|gb|EHK01333.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
Length = 708
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 18 VIFYNADVAAIRQVE----VYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYL 73
VIFY +++R ++ + EV V + E ++ Y EKK +
Sbjct: 421 VIFYEPVSSSVRDIQRMGRTGRHESGEVSVLI-----AEDTRDEGYYWSAHHEKKRMNSV 475
Query: 74 IQE--KTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGD 131
++E + M D + + ++ D RE + + + + + I V D
Sbjct: 476 LEELKEEEMNRQRSLDSFQEKDDRPDIEIVADDRE--NSIAKKFSREDIKVVKKRIDVAD 533
Query: 132 YILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ILS D VERKS D + S+ RL+ Q+Q + Y KP+LLIE
Sbjct: 534 FILSEDTAVERKSAGDFVDSIIDNRLFDQLQDL-NDYVKPILLIE 577
>gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
Methanococcus jannaschii
Length = 784
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+RE + LLH IE T+ VGDY+LS + VERK+ D + S+ RL++Q+
Sbjct: 584 VDVRE--KNMAKLLHNYA-NIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLFSQL 640
Query: 162 QQMCRHYAKPLLLIE 176
+ + + KPLL++E
Sbjct: 641 KNL-KKVEKPLLIVE 654
>gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB]
gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB]
Length = 776
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+S ++I+D RE + + K+ +E T+ +GDYI+S + VERK+ D S+
Sbjct: 559 KSLAKIIIDSRE--RHIGRYISKKA-NLEFKTLEIGDYIVSDRVAVERKTAEDFESSIID 615
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAK---FLIEFDHNKPFEL 211
RL+ Q+ + + Y KPLL+IE D N+Y R+ A + F I D+ P
Sbjct: 616 KRLFNQLIDL-KKYEKPLLIIEGD---------NFYRLRENAIQGTIFSIMIDYQIPIIF 665
Query: 212 QGNYYLSRDIAAKSSD 227
N + +I K ++
Sbjct: 666 SKNMEDTANILVKIAE 681
>gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661]
gi|3915469|sp|Q58900.2|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505
gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii
DSM 2661]
Length = 778
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+RE + LLH IE T+ VGDY+LS + VERK+ D + S+ RL++Q+
Sbjct: 578 VDVRE--KNMAKLLHNYA-NIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLFSQL 634
Query: 162 QQMCRHYAKPLLLIE 176
+ + + KPLL++E
Sbjct: 635 KNL-KKVEKPLLIVE 648
>gi|333910260|ref|YP_004483993.1| helicase [Methanotorris igneus Kol 5]
gi|333750849|gb|AEF95928.1| helicase domain protein [Methanotorris igneus Kol 5]
Length = 791
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++IVD+RE + LL + +E + VGDYI+S + VERK+ D + S+ RL+
Sbjct: 588 KIIVDVRE--RHVGRLLADKA-KVEFKVLEVGDYIISDRVAVERKTAEDFVNSIIDKRLF 644
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q++ + R Y KP+L++E
Sbjct: 645 MQLKDL-RKYQKPILIVE 661
>gi|374635020|ref|ZP_09706625.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
gi|373563422|gb|EHP89616.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
Length = 753
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
E++ ++IVD+RE + LL + +E + VGDY++S + VERK+ D + S+
Sbjct: 545 EKTEIKIIVDVRE--RHVGRLLADKA-KVEFKVLEVGDYVISDRVAVERKTAEDFVNSII 601
Query: 154 SGRLYTQVQQMCRHYAKPLLLIE 176
RL+ Q++ + R Y KP+L++E
Sbjct: 602 DKRLFMQLKDL-RKYQKPILIVE 623
>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
concilii GP6]
gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP6]
Length = 762
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIG 150
TE E ++ VD RE + LL RGL + + VGDY++S + +ERK+ D +
Sbjct: 546 TEAYEERDKIYVDPRE--RGMARLLEGRGLEVTLKNLEVGDYVVSDRVAIERKTAQDFVA 603
Query: 151 SL--QSGRLYTQVQQMCRHYAKPLLLIE 176
S+ L+ Q+ + R Y +P+L++E
Sbjct: 604 SIIDPERNLFRQIADLARSYERPVLILE 631
>gi|386002261|ref|YP_005920560.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210317|gb|AET64937.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
Length = 788
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 94 EESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQ 153
EE+ VIVD RE RS L +L G+ + + VGDY++S + +ERK+ D + SL
Sbjct: 574 EEASALVIVDPRE-RS-LARMLESMGVGVTLRVLEVGDYVVSDRVGIERKTADDFVDSLV 631
Query: 154 SGR--LYTQVQQMCRHYAKPLLLIE 176
++ Q++ + R Y +P+L++E
Sbjct: 632 GAERNIFAQLKDLARSYERPILILE 656
>gi|333988597|ref|YP_004521204.1| helicase domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333826741|gb|AEG19403.1| helicase domain-containing protein [Methanobacterium sp. SWAN-1]
Length = 772
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V D RE S + L + + I+ ++V DY +S ++ +ERK+ D IGS+ RL+
Sbjct: 546 VYADSREGNSSVLRELDRLDVNIKVKGLAVADYQVSDEVAIERKTAKDFIGSIMDKRLHK 605
Query: 160 QVQQMCRHYAKPLLLIEFDH 179
Q +++ ++ KP++++E ++
Sbjct: 606 QAKELVENFEKPVIILEGEN 625
>gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z]
gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 763
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 88 GVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISD 147
VS E +E V VD RE S + L G+ I +SVGDY + I +ERK+I D
Sbjct: 539 AVSDENDERPA-VTVDNRETHSRVAEHLSNLGVKITLAQLSVGDYAVGDRILIERKTIQD 597
Query: 148 LIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ +L L+ Q++ + +P+L+IE
Sbjct: 598 FVDTLIDRDLFGQMKDLAESSIRPILIIE 626
>gi|397780382|ref|YP_006544855.1| fanconi anemia group M protein [Methanoculleus bourgensis MS2]
gi|396938884|emb|CCJ36139.1| fanconi anemia group M protein [Methanoculleus bourgensis MS2]
Length = 773
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 74 IQEKTNMAVPTEQDGVSTEPEESCG--------RVIVDMREFRSELPVLLHKRGLYIEPV 125
IQE + P ++ + P+ + G + VD RE S + V LH+ G I
Sbjct: 531 IQEFDSAMSPATRNTRAPRPDVNMGPDFDPPGPAITVDDRETSSRVAVRLHELGASITLQ 590
Query: 126 TISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHN 180
+ GDY + I VERK++ D + +L L+ Q++ M +P+L+IE + +
Sbjct: 591 RLEFGDYAIGDRILVERKTVRDFMDTLVERDLFGQIRAMADVVPRPVLIIEGEED 645
>gi|386812656|ref|ZP_10099881.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386404926|dbj|GAB62762.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 211
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 102 VDMREFRSELP-VLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
+D RE S + +L K +E +S+GD++++ I VERK+ D + SL GRL++Q
Sbjct: 7 IDYRERDSGIAGILRAKENFIVEEKKLSIGDFLINKHIAVERKTTKDFVISLIDGRLFSQ 66
Query: 161 VQQMCRHYAKPLLLIE 176
++ RH ++IE
Sbjct: 67 ASRLRRHAEAQFMVIE 82
>gi|374724263|gb|EHR76343.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote]
Length = 881
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 91 TEPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDL 148
TE + G+ +I+D RE +S L + G + ++ GD LS + +ERK+ DL
Sbjct: 637 TELQGDAGQASIILDHRESKSTLGPYIKSMGASVTFKHLTTGDVRLSDRVLIERKTARDL 696
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
+ SL GRL Q +++ +PLLLIE
Sbjct: 697 VQSLSDGRLLHQCRRLNAAALRPLLLIEI 725
>gi|374325589|ref|YP_005083786.1| hypothetical protein P186_0065 [Pyrobaculum sp. 1860]
gi|356640855|gb|AET31534.1| hypothetical protein P186_0065 [Pyrobaculum sp. 1860]
Length = 217
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE+ E+ + + G + + VGDY+ + D ERKS+ D + S+ GRL+
Sbjct: 5 VLVDTREWALEVVRAIKEAGCGVLKTRLEVGDYV-AGDFVFERKSVDDFVNSVVEGRLFE 63
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ +P++++E D
Sbjct: 64 QAERLRSSGMRPVVVVEGD 82
>gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5]
gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5]
Length = 749
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVER 142
PT+ D S + +IVD RE + L +R +E T+ +GDYILS + VER
Sbjct: 530 PTKLDKKSRNGLPNKATIIVDSRE--RHIGRYLSERA-EVEFKTLEIGDYILSDRVVVER 586
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAA----K 198
K+ D S+ RL+ Q+ + + Y +PL++IE GN ++ A
Sbjct: 587 KTAEDFENSIIDKRLFNQIMDL-KKYERPLMIIE----------GNEFVRIHENAIRGMM 635
Query: 199 FLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKL 232
F I D+ P SRDI ++DI KL
Sbjct: 636 FSIMIDYQIPI------MFSRDI-EDTADILVKL 662
>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
11571]
gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
Length = 766
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+I D RE S++ LLH +G I + GDY + I VERK+ D SL L
Sbjct: 558 IIADDRETSSKVLELLHTKGASISLERLEYGDYAIGDRIIVERKTTRDFADSLIERDLLG 617
Query: 160 QVQQMCRHYAKPLLLIE 176
QV++M KP+++IE
Sbjct: 618 QVKRMAEMCMKPVVIIE 634
>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
DSM 2375]
gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
2374]
gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
gi|222435043|gb|EEE42208.1| helicase C-terminal domain protein [Methanobrevibacter smithii DSM
2375]
gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
2374]
Length = 772
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 91 TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIG 150
T +E V D RE S++ L + + ++ ++VGDY +S ++ +ERK+ D +
Sbjct: 544 TPKKEELPVVFADTREGNSKVIRHLSEMEIDVKVQAMAVGDYQVSDEVVIERKTAKDFVD 603
Query: 151 SLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
S+ RL+ Q + + + +PL+++E D
Sbjct: 604 SIVDKRLFKQARSLMEEFKRPLIILEGD 631
>gi|297619461|ref|YP_003707566.1| ERCC4 domain-containing protein [Methanococcus voltae A3]
gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
Length = 822
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+IVD RE R L K +E T+ +GDYILS + +ERK+ D S+ RL+
Sbjct: 615 IIVDTRE-RGVGRYFLDKAN--VEFKTLEIGDYILSDRVAIERKTADDFESSIIDKRLFK 671
Query: 160 QVQQMCRHYAKPLLLIEFDH 179
Q+ + + Y KPLL+IE D
Sbjct: 672 QLGDL-KKYEKPLLIIEGDE 690
>gi|150402564|ref|YP_001329858.1| Hef nuclease [Methanococcus maripaludis C7]
gi|150033594|gb|ABR65707.1| ERCC4 domain protein [Methanococcus maripaludis C7]
Length = 749
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 42 KVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAV----PTEQDGVSTEPEESC 97
K+K + E E + + DLR ++ KT + PT+ D + +
Sbjct: 492 KLKELNEEKSEKTENKDHYMDLRS-------VVSSKTTASSEEKKPTKLDKKNKNAMPNK 544
Query: 98 GRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
+IVD RE + L ++ +E T+ +GDYILS + VERK+ D S+ RL
Sbjct: 545 ATIIVDSRE--RHIGRYLSEKA-EVEFKTLEIGDYILSDRVAVERKTAEDFENSIIDKRL 601
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAA----KFLIEFDHNKPFELQG 213
+ QV + + Y +PL++IE GN ++ A F I D+ P
Sbjct: 602 FNQVMDL-KKYERPLMIIE----------GNEFVRIHENAIRGMMFSIMIDYQIPI---- 646
Query: 214 NYYLSRDIAAKSSDITAKL 232
SRDI ++DI KL
Sbjct: 647 --MFSRDI-EDTADILVKL 662
>gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2]
gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase,
C-terminal:Helix-hairpin-helix DNA-binding, class
1:ERCC4 domain [Methanococcus maripaludis S2]
Length = 752
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVER 142
PT+ D S + +IVD RE + L ++ +E T+ +GDYILS + VER
Sbjct: 533 PTKLDKKSKSGLPNKATIIVDSRE--RHIGRYLSEKA-EVEFKTLEIGDYILSDRVAVER 589
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
K+ D S+ RL+ QV + + Y +PL++IE
Sbjct: 590 KTAEDFENSIIDKRLFNQVMDL-KKYERPLIIIE 622
>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
Length = 750
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLI--- 74
VIFY + IR ++ ++ + ++ +E + RREK +
Sbjct: 449 VIFYEPVPSEIRSIQRKGRTGRHNTGRIIVLVTRKTTDETFQIVSRRREKAMVTGMKNLT 508
Query: 75 -QEKT--NMAVPTEQDGV-----STEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVT 126
EK A+P + D + + E S ++I+D RE S++ L G I
Sbjct: 509 GHEKKILQTALPLDLDDLQKAKAAQEEVFSGPKIIIDDRELVSKVSEHLSSAGAVIRIER 568
Query: 127 ISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQ 186
+ GDY + I VERK+ D + SL L Q+++M R KP+L+IE
Sbjct: 569 LLQGDYKIGDRILVERKTSRDFVDSLIDRDLLDQLREMARVCPKPVLIIE---------G 619
Query: 187 GNYYLSRDI 195
G+ Y RDI
Sbjct: 620 GDIYSQRDI 628
>gi|374628568|ref|ZP_09700953.1| helicase domain-containing protein [Methanoplanus limicola DSM
2279]
gi|373906681|gb|EHQ34785.1| helicase domain-containing protein [Methanoplanus limicola DSM
2279]
Length = 776
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+I D RE S + L+K+G+ + + GDY + I +ERK+ D + +L L T
Sbjct: 569 IIADDRETSSAVVENLYKKGVSLTIERLEYGDYKIGDKILIERKTARDFVDTLVERDLIT 628
Query: 160 QVQQMCRHYAKPLLLIE 176
Q+++M KP+++IE
Sbjct: 629 QIRKMAEEVPKPVVIIE 645
>gi|325967813|ref|YP_004244005.1| ERCC4 domain-containing protein [Vulcanisaeta moutnovskia 768-28]
gi|323707016|gb|ADY00503.1| ERCC4 domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 260
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 100 VIVDMREFRSELPVL--LHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
+IVD RE+ + V+ + + I P + +GDY+L ++ +ERK D I S+ GRL
Sbjct: 5 IIVDSREYETAEEVIKWIKRLSCNIIPRKLDIGDYVLPNNMGIERKKAMDFISSIVDGRL 64
Query: 158 YTQVQQMCRHYAKPLLLIEFD 178
+ Q +++ + + +++E D
Sbjct: 65 FEQSKELLHAFNRAYVIVEGD 85
>gi|340624705|ref|YP_004743158.1| Hef nuclease [Methanococcus maripaludis X1]
gi|339904973|gb|AEK20415.1| Hef nuclease [Methanococcus maripaludis X1]
Length = 755
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVER 142
PT+ D S +IVD RE + L ++ +E T+ +GDYILS + VER
Sbjct: 536 PTKLDKKSKSGLPDKATIIVDSRE--RHIGRYLSEKA-EVEFKTLEIGDYILSDRVAVER 592
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
K+ D S+ RL+ QV + + Y +PL++IE
Sbjct: 593 KTAEDFENSIIDKRLFNQVMDL-KKYERPLVIIE 625
>gi|348572365|ref|XP_003471963.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Cavia porcellus]
Length = 2029
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79 NMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILS 135
++A P G + E + +C ++VD RE S V+ R G ++E ++ GDY++S
Sbjct: 1782 HLAEPHTSLGFAQEEKRTC--ILVDSREITSGFKVISSLRVAHGFHVEVCPLNGGDYVVS 1839
Query: 136 PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
+ VER+S S+++ + +L Q+Q + + + +++E + K E
Sbjct: 1840 NRMVVERRSQSEMLNVVSKSKLIKQIQHLQSMFERICVIVEKEREKTGE 1888
>gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6]
gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6]
Length = 751
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 83 PTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVER 142
PT+ D S + +I+D RE + L ++ +E T+ +GDYILS + VER
Sbjct: 532 PTKLDKKSKSGAPNKATIILDSRE--RHIGRYLSEKA-EVEFKTLEIGDYILSDRVAVER 588
Query: 143 KSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAA----K 198
K+ D S+ RL+ QV + + Y +PL++IE GN ++ A
Sbjct: 589 KTAEDFENSIIDKRLFNQVMDL-KKYERPLMIIE----------GNEFVRIHENAIRGMM 637
Query: 199 FLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKL 232
F I D+ P SRDI ++DI KL
Sbjct: 638 FSIMIDYQIPI------MFSRDI-EDTADILVKL 664
>gi|327311879|ref|YP_004338776.1| ERCC4 domain-containing protein [Thermoproteus uzoniensis 768-20]
gi|326948358|gb|AEA13464.1| ERCC4 domain protein [Thermoproteus uzoniensis 768-20]
Length = 215
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+VI D RE+R+++ + + G + + +GDYI + ERKS D I S+ GRL+
Sbjct: 3 QVIADSREYRTDVVKYIKEAGCQVVQKQLEIGDYI-AGYFLFERKSAHDFISSIVDGRLF 61
Query: 159 TQVQQMCRHYAKPLLLIEFD 178
Q ++ +P+++IE D
Sbjct: 62 DQATRLLSSGQRPVIIIEGD 81
>gi|126459243|ref|YP_001055521.1| ERCC4 domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126248964|gb|ABO08055.1| ERCC4 domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 214
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE S + + + G + + VGDY+ + ERKS SD + S+ GRL+
Sbjct: 6 VLVDTREHASPVLRAIKETGCGVVKTKLEVGDYV-AGHYVFERKSASDFVNSIIDGRLFD 64
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ KPL++IE D
Sbjct: 65 QAERLKASGLKPLVVIEGD 83
>gi|119873194|ref|YP_931201.1| ERCC4 domain-containing protein [Pyrobaculum islandicum DSM 4184]
gi|119674602|gb|ABL88858.1| ERCC4 domain protein [Pyrobaculum islandicum DSM 4184]
Length = 215
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE E+ + + G + + +GDYI + + ERK + D I S+ GRL++
Sbjct: 6 VLVDTREHAEEIIRYIKEGGCSVIKTKLEIGDYI-AGEFIFERKRVDDFINSIIDGRLFS 64
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ +PL++IE D
Sbjct: 65 QAERLREVDFRPLIIIEGD 83
>gi|150400569|ref|YP_001324335.1| Hef nuclease [Methanococcus aeolicus Nankai-3]
gi|150013272|gb|ABR55723.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
Nankai-3]
Length = 808
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 19/128 (14%)
Query: 53 SVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELP 112
S+EE + + K+ +I+ K N+ + + ST+P ++IVD RE
Sbjct: 566 SIEEDCKNNVKKEIKENINEIIENKNNIVLSNK---CSTKP----VKIIVDSRE------ 612
Query: 113 VLLHKRGLY----IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
+ R +Y +E + GD+ILS + VERK+ DL GS+ RL+ Q++ + + Y
Sbjct: 613 -KIISRYIYDKADLEFKALDNGDFILSDRVIVERKTAEDLEGSIIDKRLFKQLKDL-KKY 670
Query: 169 AKPLLLIE 176
+P+L++E
Sbjct: 671 ERPILIVE 678
>gi|119719786|ref|YP_920281.1| ERCC4 domain-containing protein [Thermofilum pendens Hrk 5]
gi|119524906|gb|ABL78278.1| ERCC4 domain protein [Thermofilum pendens Hrk 5]
Length = 246
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 100 VIVDMREFRSELPVL--LHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
VIVD RE RS PVL L + G+ + VGDY + VERKS D + S+ GRL
Sbjct: 6 VIVDDRERRS--PVLSELARLGVRYSVARLEVGDYDVGGVYGVERKSSGDFVNSVIDGRL 63
Query: 158 YTQVQQMCRHYAKPLLLIEFD 178
+ Q + + Y ++++E D
Sbjct: 64 FEQAKYLRESYETAIIVVEGD 84
>gi|344273425|ref|XP_003408522.1| PREDICTED: Fanconi anemia group M protein [Loxodonta africana]
Length = 2066
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 99 RVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSG 155
R++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+
Sbjct: 1837 RILVDSREIASGAEVISSLRAIHGLEVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKN 1896
Query: 156 RLYTQVQQMCRHYAKPLLLIEFDHNK 181
+L Q+Q + + + +++E D K
Sbjct: 1897 KLIDQIQHLQSMFERICMIVEKDREK 1922
>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
Length = 751
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+ VD RE S + L++ G I + VGDY + I VERK++ D + +L L+
Sbjct: 543 ITVDDRETSSRVVGRLYELGASIALERLEVGDYAVGDRILVERKTVQDFMNTLVERDLFG 602
Query: 160 QVQQMCRHYAKPLLLIEFDHN 180
Q++ M +P+L+IE + +
Sbjct: 603 QIKAMADAVPRPVLIIEGEDD 623
>gi|354503753|ref|XP_003513945.1| PREDICTED: Fanconi anemia group M protein homolog, partial
[Cricetulus griseus]
Length = 1914
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 75 QEKTNMAVPTEQDGVSTEPEE---SCGRVIVDMREFRSELPVLLHKR---GLYIEPVTIS 128
QEK +++ + + V P+E +C ++VD RE S L V+ R GL +E +
Sbjct: 1655 QEKGSISAASSSNTVPRLPQEGHRAC--ILVDSREITSGLEVISSLRTVHGLQVEVCPLH 1712
Query: 129 VGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
DYI+S + VERKS S+++ + + Q+Q++ + + +++E D K
Sbjct: 1713 GCDYIISNRMVVERKSQSEMLNNGSKNKFIEQIQRLQSMFQRICVIVEKDREK 1765
>gi|344240771|gb|EGV96874.1| Fanconi anemia group M protein-like [Cricetulus griseus]
Length = 1216
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 75 QEKTNMAVPTEQDGVSTEPEE---SCGRVIVDMREFRSELPVLLHKR---GLYIEPVTIS 128
QEK +++ + + V P+E +C ++VD RE S L V+ R GL +E +
Sbjct: 957 QEKGSISAASSSNTVPRLPQEGHRAC--ILVDSREITSGLEVISSLRTVHGLQVEVCPLH 1014
Query: 129 VGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
DYI+S + VERKS S+++ + + Q+Q++ + + +++E D K
Sbjct: 1015 GCDYIISNRMVVERKSQSEMLNNGSKNKFIEQIQRLQSMFQRICVIVEKDREK 1067
>gi|171185192|ref|YP_001794111.1| ERCC4 domain-containing protein [Pyrobaculum neutrophilum V24Sta]
gi|170934404|gb|ACB39665.1| ERCC4 domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 219
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE E+ + + G + + VGDY+ I ERKS SD + S+ GRL+
Sbjct: 10 VLVDSREQAEEVVRHIKEAGCAVVKTKLEVGDYVAGVFI-FERKSASDFVNSIIDGRLFD 68
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ +P++++E D
Sbjct: 69 QAERLKSAGLRPVIVVEGD 87
>gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis]
gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis]
Length = 2166
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 78 TNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYIL 134
TN++ P + + P + ++ D RE S V+ + R G+ +E +++ DYI+
Sbjct: 1917 TNLSFPRTDEVSAPTPIRTTPCILADTREISSGPEVISYLRTALGVKVEVCSLAGCDYIV 1976
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
S + VERKS S+ + +L ++Q + + + ++IE D KP E
Sbjct: 1977 SNRLAVERKSQSEFANAANRNKLVDRIQHLQHLFDRVCVVIEKDRVKPGE 2026
>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
E1-9c]
Length = 754
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
ES + VD RE S + L + G I + GDY + I VERK+ D + +L
Sbjct: 541 ESGPAITVDDRETSSRVAEGLSRLGAVITLSRLEYGDYAIGDRILVERKTTQDFVDTLVD 600
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
L Q+++M +P+L+IE G+ Y RDI
Sbjct: 601 RDLLGQLREMAGVAIRPVLIIE---------GGDLYTKRDI 632
>gi|410029255|ref|ZP_11279091.1| ERCC4-type nuclease [Marinilabilia sp. AK2]
Length = 242
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 106 EFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMC 165
EFR ++L K+ L +VGD + + VERK+++D SL GRL+ Q+ +M
Sbjct: 43 EFRKRGNIILSKKRL-------AVGDILFDNQLLVERKTVTDFCQSLIQGRLFDQIIRML 95
Query: 166 RHYAKPLLLIEFDHN-------KPFELQG 187
+ +L+IE N +P LQG
Sbjct: 96 KSKTNAVLIIEGSENDFDKSGIRPKALQG 124
>gi|352682711|ref|YP_004893235.1| XPF endonuclease [Thermoproteus tenax Kra 1]
gi|350275510|emb|CCC82157.1| XPF endonuclease [Thermoproteus tenax Kra 1]
Length = 216
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VI D RE+RS++ + + G + + VGDY+ + ERKS D + S+ RL+
Sbjct: 5 VIADTREYRSDVIKYIKEAGCQVLEKQLDVGDYV-AGLFVFERKSSHDFVTSIVDNRLFD 63
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q+ ++ +P++LIE D
Sbjct: 64 QLSRLKTSGLRPVVLIEGD 82
>gi|406659957|ref|ZP_11068093.1| Hef nuclease [Cecembia lonarensis LW9]
gi|405556360|gb|EKB51299.1| Hef nuclease [Cecembia lonarensis LW9]
Length = 225
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V +D RE + + L++ + VGD + ++ VERK++ D SL+ GRL+
Sbjct: 11 QVFIDDREPETLFLEFEKRANLFVTKKRLFVGDILFDDEMQVERKTVHDFSQSLKDGRLF 70
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q+++M + +L+IE
Sbjct: 71 DQLRKMSKTKISTILIIE 88
>gi|379004528|ref|YP_005260200.1| ERCC4-type nuclease [Pyrobaculum oguniense TE7]
gi|375159981|gb|AFA39593.1| ERCC4-type nuclease [Pyrobaculum oguniense TE7]
Length = 209
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE E+ + + G + + GDY+ + + ERKS+ D + S+ GR++
Sbjct: 5 VLVDTREHAQEVVRRIKEAGCGVLKTKLEAGDYV-AGEFVFERKSVDDFVNSVIEGRVFE 63
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ KP++++E D
Sbjct: 64 QAERLKSSGLKPVVVVEGD 82
>gi|73963567|ref|XP_537429.2| PREDICTED: Fanconi anemia group M protein [Canis lupus familiaris]
Length = 2047
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 61 SDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR-- 118
S L + + Y + ++A + V E + +C ++VD E S V+ R
Sbjct: 1782 STLEDSRTSVAYCSNSRPHLAGTHDSLRVPQEGQRTC--ILVDSCEITSGTEVISSLRAI 1839
Query: 119 -GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEF 177
GL +E ++ DYI+S + VER+S S+++ S+ +L Q+Q + + + +++E
Sbjct: 1840 HGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKNKLIDQIQHLQSMFERICVIVEK 1899
Query: 178 DHNK 181
D K
Sbjct: 1900 DKEK 1903
>gi|363735044|ref|XP_003641500.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein
homolog [Gallus gallus]
Length = 1880
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 100 VIVDMREFRSELPV---LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
V+VD RE S V L GL ++ ++ GDY++S + VERK S+L+ S+ +
Sbjct: 1649 VLVDSREISSGADVISSLKAVHGLKVQVCSLGSGDYVVSNRMAVERKFQSELLSSVNRTK 1708
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
+ ++Q++ + + +++E D +P E
Sbjct: 1709 VTQRLQRLQGMFERVCVIVEKDRTRPGE 1736
>gi|145591008|ref|YP_001153010.1| ERCC4 domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282776|gb|ABP50358.1| ERCC4 domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 216
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE E+ + + G + + GDY+ + + ERKS+ D + S+ GR++
Sbjct: 5 VLVDTREHAQEVVRHIKEAGCRVLKTKLEAGDYV-AGEYVFERKSVDDFVNSVIEGRVFE 63
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ KP++++E D
Sbjct: 64 QAERLKSSGLKPVVVVEGD 82
>gi|355572972|ref|ZP_09043940.1| helicase domain protein [Methanolinea tarda NOBI-1]
gi|354823984|gb|EHF08243.1| helicase domain protein [Methanolinea tarda NOBI-1]
Length = 746
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFM----------QYGESVEEQAYLSDLRREK 67
V+FY A + IR ++ + ++ + +Y E++ ++ +RR
Sbjct: 449 VVFYEAVPSEIRSIQRKGRTGRSGRGRIVVLVTKGTTDEVFRYVSQTREKSMIAGIRRMH 508
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVI-VDMREFRSELPVLLHKRGLYIEPVT 126
E + P Q + PE+ G V+ VD RE S + +L + +
Sbjct: 509 HGTTPF--ESVPRSPPAAQSSIGDFPEK--GPVVKVDDRETSSRVVEVLSTLRVQLAIGR 564
Query: 127 ISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQ 186
+ GDY + I VERK++ D + +L L+ Q++ + +P+L+IE
Sbjct: 565 LPSGDYAIGDRILVERKTVRDFVDTLVDRDLFAQLKVLAESAPRPVLIIEG--------T 616
Query: 187 GNYYLSRDI 195
+ Y +RDI
Sbjct: 617 ADIYTARDI 625
>gi|403163354|ref|XP_003323429.2| hypothetical protein PGTG_04966 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164022|gb|EFP79010.2| hypothetical protein PGTG_04966 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 150
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 239 FPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
F KLRLIWSS P TA++F +LK EP AE AS +G
Sbjct: 2 FKKLRLIWSSSPSATAEIFQDLKLTHPEPDAETASLVG 39
>gi|355693246|gb|EHH27849.1| hypothetical protein EGK_18153 [Macaca mulatta]
Length = 2016
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E +E+C ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1782 EGKETC--ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1839
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1840 LNSINKNKLIEQIQHLQSMFERICVIVEKDREK 1872
>gi|402876056|ref|XP_003901798.1| PREDICTED: Fanconi anemia group M protein [Papio anubis]
Length = 1980
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E +E+C ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1746 EGKETC--ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1803
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1804 LNSINKNKLIEQIQHLQSMFERICVIVEKDREK 1836
>gi|109083473|ref|XP_001096802.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Macaca mulatta]
Length = 2050
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E +E+C ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1816 EGKETC--ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1873
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1874 LNSINKNKLIEQIQHLQSMFERICVIVEKDREK 1906
>gi|297297766|ref|XP_001096470.2| PREDICTED: Fanconi anemia group M protein isoform 1 [Macaca mulatta]
Length = 2024
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E +E+C ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1790 EGKETC--ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1847
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1848 LNSINKNKLIEQIQHLQSMFERICVIVEKDREK 1880
>gi|355778552|gb|EHH63588.1| hypothetical protein EGM_16587 [Macaca fascicularis]
Length = 2052
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E +E+C ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1818 EGKETC--ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1875
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1876 LNSINKNKLIEQIQHLQSMFERICVIVEKDREK 1908
>gi|426248444|ref|XP_004017973.1| PREDICTED: Fanconi anemia group M protein [Ovis aries]
Length = 2043
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1815 ILVDSREIVSGSEVVSSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSITKNK 1874
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1875 LIDQIQHLQSMFERICVIVEKDREK 1899
>gi|60552150|gb|AAH91339.1| RGD1307897 protein [Rattus norvegicus]
Length = 518
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + VERKS S+++ + +
Sbjct: 312 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSNRMVVERKSQSEMLSNTAKNK 371
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFEL 185
Q+Q++ + + +++E D K ++
Sbjct: 372 FIEQIQRLQSMFQRICVIVEKDREKAGDI 400
>gi|390943593|ref|YP_006407354.1| ERCC4-type nuclease [Belliella baltica DSM 15883]
gi|390417021|gb|AFL84599.1| ERCC4-type nuclease [Belliella baltica DSM 15883]
Length = 247
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+++D RE + L LL + + + + VGDY++ ++ VERK+ SD S++ GR +
Sbjct: 28 IVIDDREPDAMLEYLLFYKNIIVRKERLLVGDYLIDSELIVERKTPSDFSASIKDGRFFK 87
Query: 160 QVQQMCRHYAKPLLLIE 176
Q ++ L++E
Sbjct: 88 QAGKLAISKVPACLILE 104
>gi|326921331|ref|XP_003206914.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Meleagris gallopavo]
Length = 1864
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 100 VIVDMREFRSELPV---LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
V+VD RE S V L G+ ++ ++ DY++S + VERK S+L+ S+ +
Sbjct: 1633 VLVDSREISSGTDVISSLKAVHGVKVQVCSLGSSDYVVSNRMAVERKLQSELLSSVNRSK 1692
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
+ ++Q++ + + +++E D KP E
Sbjct: 1693 VTQRIQRLQSMFERVCVIVEKDRTKPGE 1720
>gi|149051315|gb|EDM03488.1| rCG61693 [Rattus norvegicus]
Length = 487
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + VERKS S+++ + +
Sbjct: 255 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSNRMVVERKSQSEMLSNTAKNK 314
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFEL 185
Q+Q++ + + +++E D K ++
Sbjct: 315 FIEQIQRLQSMFQRICVIVEKDREKAGDI 343
>gi|296109929|ref|YP_003616878.1| DEAD/DEAH box helicase domain protein [methanocaldococcus infernus
ME]
gi|295434743|gb|ADG13914.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
ME]
Length = 770
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+RE + LL ++ +E T+ +GDYI+S + +ERK+ D + S+ RL+ Q+
Sbjct: 570 VDVRE--KGMAKLLSEKA-EVELKTLELGDYIVSDRVVIERKTDEDFVNSIIDKRLFNQL 626
Query: 162 QQMCRHYAKPLLLIE 176
+ + + +P+L+IE
Sbjct: 627 KDL-KKVERPILIIE 640
>gi|440908633|gb|ELR58630.1| Fanconi anemia group M protein, partial [Bos grunniens mutus]
Length = 2036
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1809 ILVDSREIVSGSEVVSSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKNK 1868
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1869 LIDQIQYLQSMFERICVIVEKDREK 1893
>gi|359077950|ref|XP_003587635.1| PREDICTED: Fanconi anemia group M protein [Bos taurus]
Length = 2011
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1783 ILVDSREIVSGSEVVSSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKNK 1842
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1843 LIDQIQYLQSMFERICVIVEKDREK 1867
>gi|432331590|ref|YP_007249733.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
gi|432138299|gb|AGB03226.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
Length = 749
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
++++D RE S++ +L G I + GDY + I VERK+ D +L + L
Sbjct: 540 KIVIDDRETSSKVVEVLSTMGAAIRLERLPQGDYAIGDRILVERKTAKDFADTLINRDLL 599
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDI 195
Q++ M +P+L++E G+ + RDI
Sbjct: 600 GQLKAMADTVPRPILIVE---------GGDIFTQRDI 627
>gi|375298275|ref|NP_001098446.2| Fanconi anemia, complementation group M [Bos taurus]
Length = 2037
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1809 ILVDSREIVSGSEVVSSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKNK 1868
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1869 LIDQIQYLQSMFERICVIVEKDREK 1893
>gi|358418015|ref|XP_003583812.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein [Bos
taurus]
Length = 2037
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1809 ILVDSREIVSGSEVVSSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKNK 1868
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1869 LIDQIQYLQSMFERICVIVEKDREK 1893
>gi|351710100|gb|EHB13019.1| Fanconi anemia group M protein [Heterocephalus glaber]
Length = 1664
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 93 PEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLI 149
PEE V+V RE S V+ R G ++E ++ DYI+S + VER+ S+++
Sbjct: 1429 PEEKRTCVLVASREITSGFQVISSLRAVHGFHVEVCPLNGCDYIVSNRMVVERRCQSEML 1488
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ +L Q+Q + + + +++E D K
Sbjct: 1489 SAVNKNKLIEQIQHLQSMFERICVIVEKDREK 1520
>gi|220935604|ref|YP_002514503.1| ERCC4 domain-containing protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996914|gb|ACL73516.1| ERCC4 domain-containing protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 234
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
+ +D RE RS PV+ R G+ + GDY++ VERK++ DLI S++SGR
Sbjct: 12 ITIDHRESRS--PVVAALRASAGVAATFARLDCGDYLIDNRFLVERKTLPDLIESIKSGR 69
Query: 157 LYTQVQQMCR-HYAKPLLLIE 176
L+ Q ++ +P L++E
Sbjct: 70 LFDQALRLAAVEQWRPALILE 90
>gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
Length = 221
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPD---ICVERKSISDLIGSLQSG 155
++ VD RE RS L ++ + E V + VGD++++ D + VERKS SD + SL+S
Sbjct: 2 KIFVDYRE-RSVLDIIEDIFDSF-ELVNLPVGDFLITFDTYAVLVERKSASDFLNSLKSN 59
Query: 156 RLYTQVQQMC 165
RL+ Q+++M
Sbjct: 60 RLWDQMRRML 69
>gi|292492317|ref|YP_003527756.1| ERCC4 domain-containing protein [Nitrosococcus halophilus Nc4]
gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
Length = 236
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 100 VIVDMREFR-SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+I+D RE L G+ I+ + +GDY++ + ERK+++DLI S+Q GRL+
Sbjct: 17 IIIDDREANYGPATALTAMEGVSIQFQRLPLGDYLIDNRLLAERKTLTDLIASIQDGRLF 76
Query: 159 TQVQQMCRHYAKPLLLIE 176
Q ++ + ++L+E
Sbjct: 77 RQGCRLAASQYRTVILLE 94
>gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
Length = 221
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPD---ICVERKSISDLIGSLQSG 155
++ VD RE RS L ++ + E V + VGD++++ D + VERKS SD + SL+S
Sbjct: 2 KIFVDYRE-RSVLDIIEDIFDSF-ELVNLPVGDFLITFDTYAVLVERKSASDFLNSLKSN 59
Query: 156 RLYTQVQQMC 165
RL+ Q+++M
Sbjct: 60 RLWDQMRRML 69
>gi|47079403|gb|AAT10146.1| ATP-dependent RNA helicase [uncultured marine group II
euryarchaeote DeepAnt-JyKC7]
Length = 878
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 90 STEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
S+ P+ + D RE S + L G + + GD+ + I VERK++ D +
Sbjct: 632 SSLPDVPGSVIAADDRELNSAVVARLKALGAEVVIERLKTGDFRIGERILVERKTVRDFV 691
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIE 176
SL GRL Q ++ + L+LIE
Sbjct: 692 DSLVDGRLLEQASRLVGAAPRSLILIE 718
>gi|332229234|ref|XP_003263796.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Nomascus
leucogenys]
Length = 2024
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 93 PEESCGRVI-VDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
P+E G I V E S L V+ R GL +E ++ DYI+S + VER+S S+L
Sbjct: 1788 PQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEL 1847
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ + Q+Q + + + +++E D K
Sbjct: 1848 LNSVNKSKFIEQIQHLQSMFERICVIVEKDREK 1880
>gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus
leucogenys]
Length = 2050
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 93 PEESCGRVI-VDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
P+E G I V E S L V+ R GL +E ++ DYI+S + VER+S S+L
Sbjct: 1814 PQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEL 1873
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ + Q+Q + + + +++E D K
Sbjct: 1874 LNSVNKSKFIEQIQHLQSMFERICVIVEKDREK 1906
>gi|390952409|ref|YP_006416168.1| ERCC4-type nuclease [Thiocystis violascens DSM 198]
gi|390428978|gb|AFL76043.1| ERCC4-type nuclease [Thiocystis violascens DSM 198]
Length = 227
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 100 VIVDMREFRSE-LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
V VD RE RS L VL + G+ ++ + VGDY++ ERK++ DL S+Q GRL+
Sbjct: 12 VQVDDRESRSAVLDVLKMQTGVDVQVRRLPVGDYLIDDRFLFERKTLIDLTLSIQDGRLF 71
Query: 159 TQ 160
+Q
Sbjct: 72 SQ 73
>gi|395504025|ref|XP_003756361.1| PREDICTED: Fanconi anemia group M protein, partial [Sarcophilus
harrisii]
Length = 1871
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 88 GVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKS 144
G+ + + +C ++VD RE S V+ R GL +E ++ DYI+S + VERKS
Sbjct: 1776 GLPEKRQRNC--ILVDSREIASGSEVISSLRTIHGLEVEVCPLNGCDYIVSNRMAVERKS 1833
Query: 145 ISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
S++I ++ +L ++Q + + + +++E D K
Sbjct: 1834 QSEMINNMNRCKLIEKIQYLQNIFERICVIVEKDREK 1870
>gi|350579040|ref|XP_003480507.1| PREDICTED: Fanconi anemia group M protein [Sus scrofa]
Length = 2053
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E + +C ++VD RE S V+ R G +E ++ DYI+S + VERKS S++
Sbjct: 1819 EGQRTC--ILVDSREITSGSEVISSLRAIHGFQVEVCPLNGCDYIVSNRMVVERKSQSEM 1876
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ + +L Q+Q + + + +++E D K
Sbjct: 1877 LTCINKNKLIDQIQYLQSMFERICVIVEKDREK 1909
>gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo sapiens]
Length = 2083
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1832 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1882
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1883 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1939
>gi|426376787|ref|XP_004055167.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Gorilla gorilla
gorilla]
Length = 2048
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>gi|403277961|ref|XP_003930608.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Saimiri
boliviensis boliviensis]
Length = 2047
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++V E S L V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1819 ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKNK 1878
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1879 LIEQIQHLQSMFERICVIVEKDREK 1903
>gi|187954507|gb|AAI40777.1| FANCM protein [Homo sapiens]
gi|219518301|gb|AAI44512.1| FANCM protein [Homo sapiens]
Length = 2022
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1771 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1821
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1822 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1878
>gi|397523571|ref|XP_003831801.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan paniscus]
Length = 2048
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>gi|426376789|ref|XP_004055168.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Gorilla gorilla
gorilla]
Length = 2022
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1771 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1821
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1822 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1878
>gi|403277963|ref|XP_003930609.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 2021
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++V E S L V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1793 ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKNK 1852
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1853 LIEQIQHLQSMFERICVIVEKDREK 1877
>gi|114652855|ref|XP_509928.2| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan troglodytes]
Length = 2048
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens]
gi|78099254|sp|Q8IYD8.2|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM;
AltName: Full=ATP-dependent RNA helicase FANCM; AltName:
Full=Fanconi anemia-associated polypeptide of 250 kDa;
Short=FAAP250; AltName: Full=Protein Hef ortholog
gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens]
gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo sapiens]
gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct]
Length = 2048
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>gi|241568991|ref|XP_002402625.1| conserved hypothetical protein [Ixodes scapularis]
gi|215500066|gb|EEC09560.1| conserved hypothetical protein [Ixodes scapularis]
Length = 501
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 111 LPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAK 170
+ +L K+G+ + + VGD+++S CV RKS D S RL +V+++ Y +
Sbjct: 424 VSMLRAKQGINVHVHALEVGDFLVSRRTCVIRKSWIDFGNSQNQARLVDEVRRLFELYDR 483
Query: 171 PLLLIE-FDHNKPFE 184
P +++E + +KP E
Sbjct: 484 PCVILERLERSKPGE 498
>gi|397523573|ref|XP_003831802.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan paniscus]
Length = 2022
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1771 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1821
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1822 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1878
>gi|332842130|ref|XP_003314350.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan troglodytes]
Length = 2022
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1771 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1821
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1822 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1878
>gi|410339047|gb|JAA38470.1| Fanconi anemia, complementation group M [Pan troglodytes]
Length = 2048
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>gi|119586187|gb|EAW65783.1| Fanconi anemia, complementation group M, isoform CRA_c [Homo sapiens]
Length = 1979
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1728 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1778
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1779 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1835
>gi|395838642|ref|XP_003792221.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Otolemur
garnettii]
Length = 2045
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD E S L V+ R GL +E ++ DYI+S + VER+ S+++ S+ +
Sbjct: 1817 ILVDSHEITSGLEVISSLRAVHGLQVEVCPLNGCDYIVSNRMVVERRHQSEMLTSVSKNK 1876
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D +
Sbjct: 1877 LIEQIQHLQSMFERICVIVEKDRER 1901
>gi|395838644|ref|XP_003792222.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Otolemur
garnettii]
Length = 2019
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD E S L V+ R GL +E ++ DYI+S + VER+ S+++ S+ +
Sbjct: 1791 ILVDSHEITSGLEVISSLRAVHGLQVEVCPLNGCDYIVSNRMVVERRHQSEMLTSVSKNK 1850
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D +
Sbjct: 1851 LIEQIQHLQSMFERICVIVEKDRER 1875
>gi|18312843|ref|NP_559510.1| hypothetical protein PAE1735 [Pyrobaculum aerophilum str. IM2]
gi|18160330|gb|AAL63692.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 216
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
V+VD RE E+ + + G + + GDY + ERKS+ D + S+ GR++
Sbjct: 5 VLVDTRERALEVVRYIKEGGCGVIKTKLEAGDYA-AGGYVFERKSVDDFVNSVIEGRIFE 63
Query: 160 QVQQMCRHYAKPLLLIEFD 178
Q +++ KP++++E D
Sbjct: 64 QAEKLKSTGLKPVVVVEGD 82
>gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Ailuropoda melanoleuca]
Length = 2048
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E + +C ++VD E S V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 1814 EGQRTC--ILVDSCEITSGSEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 1871
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q+Q + + + +++E D K
Sbjct: 1872 LNSINKNKLIDQIQYLQSMFERICVIVEKDREK 1904
>gi|344341698|ref|ZP_08772615.1| Argininosuccinate synthase [Thiocapsa marina 5811]
gi|343798452|gb|EGV16409.1| Argininosuccinate synthase [Thiocapsa marina 5811]
Length = 638
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 102 VDMREFRSELPVLLHKRGLY-IEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQ 160
VD RE S + L + + I+ + VGDY++ + ERK++ DL S++ GRL+ Q
Sbjct: 11 VDDREASSPVLAALRRHPEFQIQVERLPVGDYLIDDSLLFERKTLMDLAASIKDGRLFAQ 70
Query: 161 VQQMCRHYAKPLLLIE 176
+++ + L++E
Sbjct: 71 AERLASAGPRGALILE 86
>gi|301617487|ref|XP_002938176.1| PREDICTED: Fanconi anemia group M protein-like [Xenopus (Silurana)
tropicalis]
Length = 2037
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++ D RE S V+ + + G+ +E ++ DYI+S + VERKS S+ S +
Sbjct: 1810 ILADSREISSGPEVISYLKMSLGVKVEVCSLGGCDYIVSSRLAVERKSQSEFANSANRSK 1869
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSR 193
L ++Q + + + L+IE D K E + +R
Sbjct: 1870 LVDRIQHLQHLFDRVCLIIEKDRIKQGETSRTFQRTR 1906
>gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein [Pongo abelii]
Length = 1967
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1716 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1766
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S + Q+Q + + + +++E D K
Sbjct: 1767 CPLNGCDYIVSNRMVVERRSQSEMLNSANKNKFIEQIQHLQSMFERICVIVEKDREK 1823
>gi|70916049|ref|XP_732380.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56503196|emb|CAH83127.1| hypothetical protein PC300336.00.0 [Plasmodium chabaudi chabaudi]
Length = 190
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 228 ITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRY 287
I KL ++L FP+L+++WS TA+LF+ LK D+P + I T +D + Y
Sbjct: 8 IYTKLVTISLQFPRLKILWSPFSLFTAKLFWSLKVNADQPDIFKSLHIDITLQKDAQNDY 67
Query: 288 NAAIEDFISKLPGMAEWSRARTLNLEV 314
+ E+ +L E + NLE+
Sbjct: 68 DITYEETELQLVDKIETQGNDSQNLEI 94
>gi|431893730|gb|ELK03551.1| Fanconi anemia group M protein [Pteropus alecto]
Length = 2039
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E + +C ++VD RE S ++ R G +E ++ DYI+S + VER+S S++
Sbjct: 1805 ENQRTC--ILVDSREITSGSEIISSLRAIHGFQVEVCPLNGCDYIVSNRMVVERRSQSEM 1862
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ ++ + Q+Q + + + +++E D K
Sbjct: 1863 LNNINKNKFIDQIQYLQSMFERVCVIVEKDREK 1895
>gi|336122551|ref|YP_004577326.1| helicase domain-containing protein [Methanothermococcus okinawensis
IH1]
gi|334857072|gb|AEH07548.1| helicase domain-containing protein [Methanothermococcus okinawensis
IH1]
Length = 797
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
GDYI+S + VERK+ D S+ RL+ Q+ + + Y +P+L+IE
Sbjct: 622 GDYIVSDRVIVERKTAEDFESSIIDKRLFKQLTDL-KKYERPVLIIE 667
>gi|405953921|gb|EKC21486.1| Fanconi anemia group M protein [Crassostrea gigas]
Length = 2327
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 100 VIVDMREF---RSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + + L K G+ ++ + DYI+S + V+R+ S+ + +
Sbjct: 2106 ILVDSREINGCQDIISELRFKYGITVQTAQLGNCDYIVSNRMGVDRQQWSEFTNGSRKDK 2165
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L +V +C + KP L+IE D+ K
Sbjct: 2166 LVERVTALCDLFDKPALIIERDNVK 2190
>gi|10047267|dbj|BAB13422.1| KIAA1596 protein [Homo sapiens]
Length = 1151
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++V E S L V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 923 ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKNK 982
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q + + + +++E D K
Sbjct: 983 FIEQIQHLQSMFERICVIVEKDREK 1007
>gi|296214902|ref|XP_002753903.1| PREDICTED: Fanconi anemia group M protein [Callithrix jacchus]
Length = 2043
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++V E S L V+ R GL +E ++ DYI+S + VER+S S+++ S+ +
Sbjct: 1815 ILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKNK 1874
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q++ + + + +++E D K
Sbjct: 1875 LLEQIRHLQSMFERICVIVEKDREK 1899
>gi|154150356|ref|YP_001403974.1| Hef nuclease [Methanoregula boonei 6A8]
gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
Length = 745
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 18 VIFYNADVAAIRQVEVY-QCAQSEVKVKVFFMQYGESVEEQAYLSDL--RREKKAFEYLI 74
VIFY + IR ++ + +S V G S + Y+S R+ +K +
Sbjct: 452 VIFYEPVPSEIRSIQRKGRTGRSGAGRVVVLATKGTSDDVYRYVSQTKERQMQKNLRQMS 511
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVI-VDMREFRSELPVLLHKRGLYIEPVTISVGDYI 133
+ P D E G I +D RE S++ L G I + GDY
Sbjct: 512 GQDITAQQPVMADQTRIEEFTPQGPAIRIDDRETSSKVVEELSGMGAAIRLERLPQGDYA 571
Query: 134 LSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSR 193
+ I VERK+ D + +L + L Q + + +P+++IE G+ Y R
Sbjct: 572 IGDRILVERKTARDFVDTLINRDLLGQAKSLADAVPRPVMVIE---------GGDIYTQR 622
Query: 194 DI 195
D+
Sbjct: 623 DM 624
>gi|387597302|gb|EIJ94922.1| hypothetical protein NEPG_00447 [Nematocida parisii ERTm1]
Length = 572
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 26/127 (20%)
Query: 86 QDGVSTEPEESCGR--VIVDMREFRS-ELPVLLH----KRGLYIEPVTISVGDYILS--- 135
QDG + E + + +++D+RE ++ E P H G+ E +S+GD++ S
Sbjct: 301 QDGTQIDLESADIQPMLLIDIREKKTREDPYFFHFFLSHAGVNTETRVLSIGDFLWSYVK 360
Query: 136 ------PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
++ +ERK+I DL+ S++ GR Q ++ L+ NK + ++GNY
Sbjct: 361 NMQEYYCNLLIERKTIRDLLQSVRDGRYREQKER----------LLSLPGNKMYCIEGNY 410
Query: 190 YLSRDIA 196
+ + +
Sbjct: 411 PMEKSVV 417
>gi|387593646|gb|EIJ88670.1| hypothetical protein NEQG_01360 [Nematocida parisii ERTm3]
Length = 572
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 26/127 (20%)
Query: 86 QDGVSTEPEESCGR--VIVDMREFRS-ELPVLLH----KRGLYIEPVTISVGDYILS--- 135
QDG + E + + +++D+RE ++ E P H G+ E +S+GD++ S
Sbjct: 301 QDGTQIDLESADIQPMLLIDIREKKTREDPYFFHSFLSHAGVNTETRVLSIGDFLWSYVK 360
Query: 136 ------PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
++ +ERK+I DL+ S++ GR Q ++ L+ NK + ++GNY
Sbjct: 361 NMQEYYCNLLIERKTIRDLLQSVRDGRYREQKER----------LLSLPGNKMYCIEGNY 410
Query: 190 YLSRDIA 196
+ + +
Sbjct: 411 PMEKSVV 417
>gi|390356122|ref|XP_003728709.1| PREDICTED: uncharacterized protein LOC100890436 [Strongylocentrotus
purpuratus]
Length = 931
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 131 DYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK-------PF 183
DY+ S + VE++++S+ +L +V+ MC + +P L+IE D +K P
Sbjct: 744 DYVTSTRMGVEKRTLSEFANGANKQKLLDRVRHMCELFDRPTLIIEKDRDKNRDKRQPPK 803
Query: 184 ELQGNYYLSRDIAA 197
L YL +AA
Sbjct: 804 TLIRTKYLDSTLAA 817
>gi|378755230|gb|EHY65257.1| hypothetical protein NERG_01703 [Nematocida sp. 1 ERTm2]
Length = 573
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VIVDMREFRS-ELPVLLH----KRGLYIEPVTISVGDYI---------LSPDICVERKSI 145
+++D+RE RS E P H G+ E +S+GD++ L + +ERK+I
Sbjct: 320 LLIDIREKRSREDPYFFHTFLSHAGVKAETRVLSIGDFLWAHIKNSQELYCKVLIERKTI 379
Query: 146 SDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHN 180
DL+ S++ GR Q +++ + + IE H+
Sbjct: 380 RDLLQSVRDGRYREQKERLVSLPGRKIYCIEGTHS 414
>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
Length = 2021
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 1781 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 1840
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 1841 FIEQMQRLQSMFQRICVIVEKDREK 1865
>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
gi|78099255|sp|Q8BGE5.3|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
FACM; AltName: Full=ATP-dependent RNA helicase FANCM
Length = 2021
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 1781 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 1840
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 1841 FIEQMQRLQSMFQRICVIVEKDREK 1865
>gi|50511007|dbj|BAD32489.1| mKIAA1596 protein [Mus musculus]
Length = 1382
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 1142 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 1201
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 1202 FIEQMQRLQSMFQRICVIVEKDREK 1226
>gi|385301513|gb|EIF45700.1| single-stranded dna endonuclease (with rad10p) [Dekkera
bruxellensis AWRI1499]
Length = 118
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 15 PTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQYGESVEEQ 57
P+ VI Y +++ IR++E YQ + + + K +FM YG SVEEQ
Sbjct: 71 PSXVILYEPNLSFIRKIEQYQAERRKSDRAKCYFMYYGGSVEEQ 114
>gi|148704699|gb|EDL36646.1| mCG145564 [Mus musculus]
Length = 510
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 270 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 329
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 330 FIEQMQRLQSMFQRICVIVEKDREK 354
>gi|26324902|dbj|BAC26205.1| unnamed protein product [Mus musculus]
Length = 406
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 259 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 318
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 319 FIEQMQRLQSMFQRICVIVEKDREK 343
>gi|373487647|ref|ZP_09578314.1| ERCC4 domain protein [Holophaga foetida DSM 6591]
gi|372008722|gb|EHP09347.1| ERCC4 domain protein [Holophaga foetida DSM 6591]
Length = 232
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 127 ISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ VGDY + + VERK + DL+ S++ GRL+ Q + + +LL+E
Sbjct: 38 LKVGDYRVDGCLVVERKGLGDLLNSIEDGRLFRQASALASCGDRCMLLLE 87
>gi|410962305|ref|XP_003987713.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein [Felis
catus]
Length = 2051
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
E + +C ++VD E S V+ R G+ +E ++ DYI+S + VER+S S++
Sbjct: 1817 EGQRTC--ILVDSCEITSGSEVISSLRAVHGIQVEVCPLNGCDYIVSNRMVVERRSQSEM 1874
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ +L Q++ + + + +++E D K
Sbjct: 1875 LNSINKNKLIDQIRYLQSMFERICVIVEKDREK 1907
>gi|355688080|gb|AER98384.1| Fanconi anemia, complementation group M [Mustela putorius furo]
Length = 203
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 119 GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
GL +E ++ DYI+S + VER+S S+++ S+ +L Q+Q + + + +++E D
Sbjct: 11 GLQVEVCPLNGWDYIVSNRMVVERRSQSEMLNSINKNKLIDQIQYLQSMFERICVIVEKD 70
Query: 179 HNKPFEL 185
K ++
Sbjct: 71 REKTGDI 77
>gi|167622342|ref|YP_001672636.1| ERCC4 domain-containing protein [Shewanella halifaxensis HAW-EB4]
gi|167352364|gb|ABZ74977.1| ERCC4 domain protein [Shewanella halifaxensis HAW-EB4]
Length = 222
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 100 VIVDMREFRSELPV--LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL 157
++ D RE R+E+ + L + L + +++GDY ++ + +ERK++SD + SL GRL
Sbjct: 8 IVYDDRE-RAEILIKQLSKQTDLRLVRKRLNLGDYQIN-EWLIERKTLSDFVISLCDGRL 65
Query: 158 YTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAA 197
++QV ++ + LLIE SRDIAA
Sbjct: 66 FSQVSRLSKSPNNTALLIEGS-------------SRDIAA 92
>gi|74193975|dbj|BAE36910.1| unnamed protein product [Mus musculus]
Length = 401
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 161 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 220
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 221 FIEQMQRLQSMFQRICVIVEKDREK 245
>gi|334310595|ref|XP_003339511.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Monodelphis domestica]
Length = 2027
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 119 GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFD 178
GL +E ++ DYI+S + VERKS S+++ S+ +L ++Q + + + +++E D
Sbjct: 1821 GLEVEVCPLNGCDYIVSNRMAVERKSQSEMVNSMNRCKLIEKIQYLQNIFERVCVIVEKD 1880
Query: 179 HNKP------FELQGNY--YLSRDIAAKFLIEF 203
K F+ NY LS I A I F
Sbjct: 1881 REKKGAVSKVFQRTKNYDSLLSALIGAGIRILF 1913
>gi|146294702|ref|YP_001185126.1| ERCC4 domain-containing protein [Shewanella putrefaciens CN-32]
gi|386315314|ref|YP_006011479.1| ERCC4 domain-containing protein [Shewanella putrefaciens 200]
gi|145566392|gb|ABP77327.1| ERCC4 domain protein [Shewanella putrefaciens CN-32]
gi|319427939|gb|ADV56013.1| ERCC4 domain protein [Shewanella putrefaciens 200]
Length = 212
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 127 ISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ +GDY L+ D +ERK++ DL+ SL GRL++Q+ ++ + LLIE
Sbjct: 36 LKLGDYQLN-DWLIERKTLPDLVQSLCDGRLFSQIARLAASPSHTALLIE 84
>gi|345306292|ref|XP_003428451.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like,
partial [Ornithorhynchus anatinus]
Length = 2081
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 115 LHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLL 174
+HK L +E +++ DYI+S + VERK +S+L+ SL +L ++Q + + + ++
Sbjct: 1872 VHK--LDVEVCSLNGCDYIVSNRMAVERKYLSELLNSLNRTKLVERIQHLQSMFERICVI 1929
Query: 175 IEFDHNK 181
+E D K
Sbjct: 1930 VEKDREK 1936
>gi|289208209|ref|YP_003460275.1| ERCC4 domain-containing protein [Thioalkalivibrio sp. K90mix]
gi|288943840|gb|ADC71539.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix]
Length = 215
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD RE + L G+ +E V + VGDY L + VERKS +D++ S+ L+
Sbjct: 10 VDRREQGKIIQRLERLEGVELEFVDLDVGDYELPGGVVVERKSATDMVLSVVDQTLWENA 69
Query: 162 QQMCRHYAKPLLLIEFDHNKP 182
++ + K + ++E D +P
Sbjct: 70 AKLKATHDKVIYVVEGDLYEP 90
>gi|406974784|gb|EKD97756.1| hypothetical protein ACD_23C00751G0018 [uncultured bacterium]
Length = 213
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 100 VIVDMREFRSELPVLLHK-RGLYIEPVTISVGDYILS-PDICVERKSISDLIGSLQSGRL 157
+ VD RE RS + L + G+ + + DY + + VERK ++DL S+ GR+
Sbjct: 8 ITVDSRETRSGMADRLRRISGVTVLQEELECADYTVGEATLGVERKEVNDLAISIMEGRI 67
Query: 158 YTQVQQMCRH-YAKPLLLIEFD 178
+ Q+ +MC+ Y ++L+E D
Sbjct: 68 FGQI-EMCKATYQTTVILVEGD 88
>gi|357020298|ref|ZP_09082533.1| hypothetical protein KEK_09822 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356480334|gb|EHI13467.1| hypothetical protein KEK_09822 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 321
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 21 YNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNM 80
+ AD + ++E+ C + + + + G Q + R + F + T
Sbjct: 51 WPADAEVVERIELRACQRRGAAIDIIAAR-GRENRSQLVFTTARGREVVF-WQGPRTTRQ 108
Query: 81 AVPTEQDGVSTEPEESCG----RVIVDMREFRS----ELPVLLHKRGLYIEPVTISVGDY 132
+ P GV T + G V+VD E + + PV + +R L ++VG+
Sbjct: 109 SRP----GVRTPSARAAGIADLHVVVDTHERYAYDFADKPVTVSRRALPCGDYGVAVGER 164
Query: 133 ILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFEL 185
+++ VERKS+SDL L +G+L Q+ ++ + +++E +++ F+L
Sbjct: 165 LVA---AVERKSLSDLTSGLLNGKLKYQLTELA-TLPRAAVVVEDRYSEIFKL 213
>gi|424811846|ref|ZP_18237086.1| ERCC4-like helicase [Candidatus Nanosalinarum sp. J07AB56]
gi|339756068|gb|EGQ39651.1| ERCC4-like helicase [Candidatus Nanosalinarum sp. J07AB56]
Length = 741
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 18 VIFYNADVAAIRQVE-VYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQ- 75
V+FY + IR ++ + + E V M G + +E Y S R+++K E +
Sbjct: 426 VVFYEPVASEIRDIQRAGRTGRQESGNVVVLMAEG-TRDEGNYWSAKRKKEKMKETIKDL 484
Query: 76 ------------------EKTNMA-VPTEQDGVSTEPEESCGR-------VIVDMREFRS 109
++T++A VP+ D + ++ G V+ D RE +
Sbjct: 485 KREHGDAPEKTLDSFGDDDQTSLADVPSTTDDLEASEQQKEGSASAEGAVVVADDRE--N 542
Query: 110 ELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
++ L + + ++ + D+++S + VERK +D S+ GRL+ Q+ ++ Y
Sbjct: 543 DVNRELARLDIEVDRQRLETADFVVSDRVAVERKEAADFADSVIDGRLFDQLSELS-EYQ 601
Query: 170 KPLLLIE 176
+ ++++E
Sbjct: 602 RAVVILE 608
>gi|126172618|ref|YP_001048767.1| ERCC4 domain-containing protein [Shewanella baltica OS155]
gi|386339393|ref|YP_006035759.1| ERCC4 domain-containing protein [Shewanella baltica OS117]
gi|125995823|gb|ABN59898.1| ERCC4 domain protein [Shewanella baltica OS155]
gi|334861794|gb|AEH12265.1| ERCC4 domain protein [Shewanella baltica OS117]
Length = 212
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 127 ISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
+ +GDY L D +ERK++ DL+ SL GRL++QV ++ + LLIE
Sbjct: 36 LKLGDYQLK-DWIIERKTLPDLVQSLCDGRLFSQVARLAQSPNHTALLIE 84
>gi|11499994|ref|NP_071240.1| DNA repair protein [Archaeoglobus fulgidus DSM 4304]
gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
Length = 208
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 115 LHKRGLYIEPVTISVGDYILSPDIC---VERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
L GL + + VGDY++ I VERK ++D I S+ GRL+ Q + Y
Sbjct: 16 LKSLGLDVYVKRLEVGDYLIKHSIYEVPVERKDVNDFISSIIDGRLFRQCHLLSSRYPLS 75
Query: 172 LLLIEFDHNKPFELQG 187
+L + D ++ E +G
Sbjct: 76 ILAVIGDIDEAVEERG 91
>gi|194207332|ref|XP_001915885.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein [Equus
caballus]
Length = 2127
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE S V+ R GL +E + YI+S + VER+ S+++ S+ +
Sbjct: 1899 ILVDSREITSGSEVISSLRAVHGLQVEVCPLHGCGYIVSNRMVVERRPQSEMLNSVGKNK 1958
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
L Q+Q + + + +++E D K
Sbjct: 1959 LIDQIQYLQSMFERICVIVEKDREK 1983
>gi|327401381|ref|YP_004342220.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
gi|327316889|gb|AEA47505.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
Length = 210
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 115 LHKRGLYIEPVTISVGDYIL---SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
L G+ + + VGDY++ S + VERK D + S+ GRL+ Q+ ++ Y
Sbjct: 16 LQSMGITVRKKRLEVGDYLIIHGSYAVAVERKDADDYVSSIVDGRLFDQLHRLANAYELS 75
Query: 172 LLLI 175
L I
Sbjct: 76 FLCI 79
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,232,819,793
Number of Sequences: 23463169
Number of extensions: 255063892
Number of successful extensions: 565939
Number of sequences better than 100.0: 746
Number of HSP's better than 100.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 563825
Number of HSP's gapped (non-prelim): 1114
length of query: 410
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 265
effective length of database: 8,957,035,862
effective search space: 2373614503430
effective search space used: 2373614503430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)