BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11328
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24087|XPF_DROME DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9
PE=2 SV=2
Length = 961
Score = 288 bits (736), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 202/328 (61%), Gaps = 58/328 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 573 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 632
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE--------------------------PEES 96
LRREK AFE++I K+ M +P QDG + E P+ +
Sbjct: 633 LRREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQAT 692
Query: 97 --CGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL S
Sbjct: 693 KETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNS 752
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRLY Q QM RHYAKP+LLIEFD NKPF LQG KF+
Sbjct: 753 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQG----------KFM-------------- 788
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
LS+ + ++DI KLQLLTLHFPKLRLIWS PY TAQLF ELK G+ EP + A++
Sbjct: 789 --LSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAA 846
Query: 275 IG-QTPNEDYTDRYNAAIEDFISKLPGM 301
+G P +N+ I DF+ +LPG+
Sbjct: 847 LGSDEPTAGEQLHFNSGIYDFLLRLPGV 874
>sp|Q9QZD4|XPF_MOUSE DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3
Length = 917
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 212/356 (59%), Gaps = 65/356 (18%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G T+ ++ G+ ++
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSIV 686
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 687 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQC 746
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L +G ++
Sbjct: 747 LAMSRYYRRPVLLIEFDPSKPFSLAP------------------------RGAFFQE--- 779
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 780 -MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET 838
Query: 281 EDYTDRYNAAIEDFISKLPGM-AEWSRA-----------RTLNLEVLGLNPGQGGN 324
+DRYN +DF+ K+PG+ A+ R+ TL+LE L G GN
Sbjct: 839 LPESDRYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGN 894
>sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3
Length = 916
Score = 258 bits (659), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 53/321 (16%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG----------------VSTEPEESCGR--------VI 101
EK+AFE LI+EK +M VP E++G VST+ ++ G+ ++
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIV 685
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKSISDLIGSL +GRLY+Q
Sbjct: 686 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQC 745
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
M R+Y +P+LLIEFD +KPF L L ++I+
Sbjct: 746 ISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEIS------------------------- 780
Query: 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPN 280
S+DI++KL LLTLHFP+LR++W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 781 ---SNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSET 837
Query: 281 EDYTDRYNAAIEDFISKLPGM 301
+++YN +DF+ K+PG+
Sbjct: 838 LPESEKYNPGPQDFLLKMPGV 858
>sp|Q9QYM7|XPF_CRIGR DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2
SV=3
Length = 913
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 200/323 (61%), Gaps = 57/323 (17%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 563 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 622
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG------------VSTEP---------EESCG---RVI 101
EK+AFE LI+EK +M VP E++G VST+ +E G ++
Sbjct: 623 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTVSTDAPADTRKAGGQEHNGTQPSIV 682
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+P++CVERKS+SDLIGSL SGRLY+Q
Sbjct: 683 VDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLNSGRLYSQC 742
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFEL--QGNYYLSR 219
M R+Y +P+LLIEFD KPF L +G+++
Sbjct: 743 LAMSRYYRRPVLLIEFDAG--------------------------KPFSLAPRGSFFQE- 775
Query: 220 DIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQT 278
SSD+++KL LLTLHFP+LRL+W P+ TA+LF ELKQ + +P A A +I +
Sbjct: 776 ---MSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADS 832
Query: 279 PNEDYTDRYNAAIEDFISKLPGM 301
+D+YN +DF+ K+PG+
Sbjct: 833 ETLPESDKYNPGPQDFVLKMPGI 855
>sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1
SV=2
Length = 956
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 185/322 (57%), Gaps = 60/322 (18%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQDGV------STE-PEESC---------GR--------VIVDMREFR 108
LI++K++M +P +QDG+ STE P S GR VIVDMREF
Sbjct: 675 LIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEKETQVIVDMREFM 734
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH++G+ I PVT+ VGDYILSP ICVERKSI DL S SGRL+ QV+ M R+Y
Sbjct: 735 SSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYY 794
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF +K F Q S DI+ D P+ +I
Sbjct: 795 RIPVLLIEFSQDKSFSFQS----SSDIS-------DDVTPY-----------------NI 826
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED------ 282
+KL LL LHFP+LRL+WS + TA++F LK +DEP A +G P+E+
Sbjct: 827 ISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVG-VPSEEGIIEND 885
Query: 283 -YTDRYNAAIEDFISKLPGMAE 303
+ YN + +F+ +LPG+++
Sbjct: 886 IRAENYNTSAVEFLRRLPGVSD 907
>sp|P36617|RAD16_SCHPO DNA repair protein rad16 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad16 PE=1 SV=2
Length = 877
Score = 211 bits (537), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 172/311 (55%), Gaps = 49/311 (15%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +L+P VI +++D IR+VEVY+ + ++V+FM YG S+EEQ YL +RREK +
Sbjct: 542 LNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQKYLFSVRREKDS 601
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEES----------CG-----------RVIVDMREFR 108
F LI+E++NMA+ D E +ES G RVIVD+REFR
Sbjct: 602 FSRLIKERSNMAIVLTADSERFESQESKFLRNVNTRIAGGGQLSITNEKPRVIVDLREFR 661
Query: 109 SELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY 168
S LP +LH + P + VGDYILSP ICVERKSI DLI SL +GRLY+Q + M +Y
Sbjct: 662 SSLPSILHGNNFSVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRLYSQCEAMTEYY 721
Query: 169 AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDI 228
P+LLIEF+ ++ F + PF LS +I +D+
Sbjct: 722 EIPVLLIEFEQHQSFT---------------------SPPFS-----DLSSEIG--KNDV 753
Query: 229 TAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYN 288
+KL LLTL FP LR++WSS Y T+ +F +LK EP A+SIG +D T+ YN
Sbjct: 754 QSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEAGQDSTNTYN 813
Query: 289 AAIEDFISKLP 299
A D + LP
Sbjct: 814 QAPLDLLMGLP 824
>sp|Q54PN5|XPF_DICDI DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4
PE=3 SV=1
Length = 964
Score = 201 bits (511), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 173/329 (52%), Gaps = 65/329 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++PT +I Y+ D++ RQ+EVY+ V+++FM Y +S EE Y+S L+REK +
Sbjct: 615 LDEIRPTFIIVYDPDISITRQIEVYKAENPGTPVRLYFMTYSDSSEEYQYISKLQREKSS 674
Query: 70 FEYLIQEKTNMAVPTEQDGV----------------STEPEESCG--------------- 98
FE LI+EKTN+ + TEQ+G ST G
Sbjct: 675 FEKLIREKTNLIIDTEQEGKIQLVDNSKLELLDDMKSTRNSRLGGLMKNFDSIQQQQQQQ 734
Query: 99 ----RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQS 154
+I+D EF+S LPV+LH G I P+ + VGD++LSP C+ERKS+SDLIGS S
Sbjct: 735 QQKKTIIIDSHEFKSSLPVVLHNNGYEIIPLRLEVGDFVLSPIHCIERKSVSDLIGSFNS 794
Query: 155 GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGN 214
GRL+TQ++ M R Y P+LLIEFD N+PF L P ELQ +
Sbjct: 795 GRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVA--------------------PDELQKD 834
Query: 215 YYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASS 274
Y + +KL LT FP+LR+IWS Y T +++ ++K G EP + +
Sbjct: 835 Y-------LSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPDPSMVNV 887
Query: 275 IGQTPNEDYTDRYNAAIEDFISKLPGMAE 303
I + N+D +NA +D + +PG+ +
Sbjct: 888 IPEV-NDDQNYNFNA--QDVLRTMPGVND 913
>sp|P06777|RAD1_YEAST DNA repair protein RAD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD1 PE=1 SV=1
Length = 1100
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 58/303 (19%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGR----------------------------VI 101
F LI+E N++ E + + + R VI
Sbjct: 764 FTKLIRENANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVI 823
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD REF + LP LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q
Sbjct: 824 VDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQC 883
Query: 162 QQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221
++M ++YA P LLIEFD + F L+ PF + NY ++DI
Sbjct: 884 KKMLKYYAYPTLLIEFDEGQSFSLE---------------------PFSERRNYK-NKDI 921
Query: 222 AA--------KSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVAS 273
+ +I KL L L FP L++IWSS P T + ELK GR++P A
Sbjct: 922 STVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAV 981
Query: 274 SIG 276
+G
Sbjct: 982 ILG 984
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1505 PE=3 SV=2
Length = 778
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 102 VDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQV 161
VD+RE + LLH IE T+ VGDY+LS + VERK+ D + S+ RL++Q+
Sbjct: 578 VDVRE--KNMAKLLHNYA-NIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLFSQL 634
Query: 162 QQMCRHYAKPLLLIE 176
+ + + KPLL++E
Sbjct: 635 KNL-KKVEKPLLIVE 648
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2
Length = 2048
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 68 KAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKR---GLYIEP 124
K+ +L T++ +P E G +C ++V E S L V+ R GL +E
Sbjct: 1797 KSRPHLAGTHTSLRLPQEGKG-------TC--ILVGGHEITSGLEVISSLRAIHGLQVEV 1847
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
++ DYI+S + VER+S S+++ S+ + Q+Q + + + +++E D K
Sbjct: 1848 CPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 1904
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1
SV=3
Length = 2021
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 100 VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGR 156
++VD RE + L V+ R GL +E ++ DYI+S + V R+S S+++ + +
Sbjct: 1781 ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNK 1840
Query: 157 LYTQVQQMCRHYAKPLLLIEFDHNK 181
Q+Q++ + + +++E D K
Sbjct: 1841 FIEQMQRLQSMFQRICVIVEKDREK 1865
>sp|Q7SD49|MUS81_NEUCR Crossover junction endonuclease mus-81 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=mus-81 PE=3 SV=1
Length = 645
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 137 DICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA 196
D VERK + DLIGS++ GR Q ++ R K ++ I ++N +++ Y + D A
Sbjct: 416 DYIVERKRLDDLIGSIKDGRFREQKYRLKRSGMKNVVYIIENYNIDMDIRRQYQDAMDTA 475
>sp|Q8EWH6|DER_MYCPE GTPase Der OS=Mycoplasma penetrans (strain HF-2) GN=der PE=3 SV=1
Length = 444
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 128 SVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHY----AKPLLLIEFDHNKPF 183
+VG L I KSI D + R+Y + + +H+ L+L EFD K
Sbjct: 11 NVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGLMLDEFDFKKQI 70
Query: 184 ELQGNYYLSRDIAAKFLIEF 203
ELQ NY ++ FL+ +
Sbjct: 71 ELQVNYAITEADVIVFLVSY 90
>sp|Q4INS6|MUS81_GIBZE Crossover junction endonuclease MUS81 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MUS81
PE=3 SV=1
Length = 581
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 130 GDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175
GD ++ D VERK + DLIGS++ GR + Q ++ R K ++ I
Sbjct: 347 GDEVVL-DWIVERKRLDDLIGSIKDGRFHEQKFRLQRSGVKKVIYI 391
>sp|P87248|ATG1_COLLN Serine/threonine-protein kinase ATG1 OS=Colletotrichum
lindemuthianum GN=ATG1 PE=3 SV=1
Length = 675
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 285 DRY--NAAIEDFISKLP-----GMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFL 337
DR+ NAA ED K P G+ E L L + N++ + + L
Sbjct: 117 DRHGTNAATEDMARKYPVTPGSGLHEVVTRHFLQQLASALKFLREKNYVHRDVKPQNLLL 176
Query: 338 LLFRIKPAPG-RESNPRPRVTSKNKAAVLNRG-SSLPALCKLSEQELCSLVENTTLGNAL 395
L P+PG R+ N RP +T+ N + + N G +SLP L KL++ ++ +T+L + L
Sbjct: 177 L-----PSPGFRKENSRPILTASNDSLIPNAGLASLPML-KLADFGFARVLPSTSLADTL 230
Query: 396 YKA-LHTRPEV 405
+ L+ PE+
Sbjct: 231 CGSPLYMAPEI 241
>sp|Q60012|HRDD_STRVF RNA polymerase principal sigma factor HrdD OS=Streptomyces
viridifaciens GN=hrdD PE=3 SV=1
Length = 332
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 186 QGNYYLSRDIAAKFLIEFDHNKPFELQ--GNYYLSRDIAAKSSDITAKLQLLTLHFPKLR 243
+GN L R + +FD+ K F+ +++ + I +D Q T+ P +
Sbjct: 128 EGNAGLVRAVE-----KFDYRKGFKFSTYATWWIRQAITRSIAD-----QSRTIRLP-VH 176
Query: 244 LIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTP 279
L+ G Q F + GRD AEVA+ +G TP
Sbjct: 177 LVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTP 212
>sp|Q4IBX0|NUF2_GIBZE Probable kinetochore protein NUF2 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NUF2 PE=3
SV=1
Length = 462
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 18 VIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77
V F + A I Q Y A+S K ++ + YGE+ E + L D++R +KA E +Q+K
Sbjct: 149 VRFRESQTAVIDQH--YNKAES-TKTRIETL-YGENQENEGRLEDMKRNRKAMEAQVQQK 204
Query: 78 T 78
T
Sbjct: 205 T 205
>sp|Q8C0D7|ING4_MOUSE Inhibitor of growth protein 4 OS=Mus musculus GN=Ing4 PE=1 SV=2
Length = 249
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 206 NKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
N PFELQ N+ L RD+ ++ D+ A++ L +
Sbjct: 16 NLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEY 49
>sp|Q9UNL4|ING4_HUMAN Inhibitor of growth protein 4 OS=Homo sapiens GN=ING4 PE=1 SV=1
Length = 249
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 206 NKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
N PFELQ N+ L RD+ ++ D+ A++ L +
Sbjct: 16 NLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEY 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,879,565
Number of Sequences: 539616
Number of extensions: 6085508
Number of successful extensions: 13760
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13710
Number of HSP's gapped (non-prelim): 30
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)