Query psy11328
Match_columns 410
No_of_seqs 187 out of 609
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 15:34:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgw_A XPF endonuclease; hydro 100.0 3.9E-43 1.3E-47 327.4 23.0 212 95-403 6-218 (219)
2 1j23_A HEF nuclease, ATP-depen 100.0 7.6E-37 2.6E-41 271.3 11.6 134 96-269 3-136 (143)
3 2ziu_A MUS81 protein; helix-ha 100.0 3.3E-35 1.1E-39 287.2 9.9 216 94-402 16-307 (311)
4 2zix_A Crossover junction endo 100.0 5.1E-35 1.8E-39 286.2 -1.6 244 94-403 21-304 (307)
5 4gfj_A Topoisomerase V; helix- 99.9 1.4E-24 4.9E-29 219.9 -8.0 181 118-396 320-516 (685)
6 3c1y_A DNA integrity scanning 99.5 3.7E-16 1.3E-20 157.6 -5.1 161 120-401 191-369 (377)
7 1z00_B DNA repair endonuclease 99.3 3.3E-12 1.1E-16 104.3 7.5 47 356-403 26-73 (84)
8 2a1j_A DNA repair endonuclease 99.2 9.3E-12 3.2E-16 96.0 5.8 48 356-404 12-60 (63)
9 2a1i_A DNA excision repair pro 98.4 9E-07 3.1E-11 79.0 9.2 117 96-266 16-137 (146)
10 1z00_A DNA excision repair pro 98.2 1.5E-06 5E-11 70.1 5.9 52 356-408 27-80 (89)
11 2a1j_B DNA excision repair pro 98.0 5.7E-06 2E-10 67.1 5.7 48 356-404 40-89 (91)
12 1x2i_A HEF helicase/nuclease; 97.8 2.2E-05 7.5E-10 60.3 4.7 49 356-405 22-72 (75)
13 2nrt_A Uvrabc system protein C 97.7 4.2E-05 1.4E-09 72.4 6.3 45 356-400 176-220 (220)
14 1kft_A UVRC, excinuclease ABC 97.6 2.6E-05 8.9E-10 61.4 3.4 49 352-401 28-78 (78)
15 3c65_A Uvrabc system protein C 97.4 2.7E-05 9.2E-10 73.9 0.0 51 350-401 175-226 (226)
16 2owo_A DNA ligase; protein-DNA 97.2 0.00047 1.6E-08 74.5 6.8 86 294-402 481-567 (671)
17 1wp9_A ATP-dependent RNA helic 97.1 0.00038 1.3E-08 67.1 5.2 61 10-70 433-493 (494)
18 2ziu_B Crossover junction endo 97.0 0.0061 2.1E-07 60.6 12.2 158 96-262 21-212 (341)
19 1dgs_A DNA ligase; AMP complex 96.9 0.0013 4.3E-08 71.1 7.7 87 294-403 476-563 (667)
20 4glx_A DNA ligase; inhibitor, 96.9 0.0012 4E-08 70.4 6.5 87 293-402 480-567 (586)
21 4a2p_A RIG-I, retinoic acid in 96.1 0.0065 2.2E-07 60.8 6.2 66 10-77 467-532 (556)
22 1ixr_A Holliday junction DNA h 95.9 0.0094 3.2E-07 55.0 5.9 48 356-403 80-131 (191)
23 3sgi_A DNA ligase; HET: DNA AM 95.8 0.0016 5.4E-08 69.8 0.0 51 353-404 534-586 (615)
24 1cuk_A RUVA protein; DNA repai 95.6 0.013 4.6E-07 54.4 5.7 48 356-403 81-132 (203)
25 4a2q_A RIG-I, retinoic acid in 95.6 0.015 5.1E-07 62.7 6.6 67 10-78 708-774 (797)
26 4a2w_A RIG-I, retinoic acid in 94.8 0.029 9.9E-07 62.0 6.1 66 10-77 708-773 (936)
27 3tbk_A RIG-I helicase domain; 94.3 0.045 1.5E-06 54.4 5.5 66 10-77 466-531 (555)
28 1wcn_A Transcription elongatio 93.8 0.095 3.3E-06 40.8 5.4 49 352-400 11-61 (70)
29 1vq8_Y 50S ribosomal protein L 93.5 0.013 4.5E-07 55.9 0.0 49 352-401 19-70 (241)
30 1z5z_A Helicase of the SNF2/RA 91.9 0.15 5E-06 48.4 4.8 47 13-59 182-231 (271)
31 2duy_A Competence protein come 91.8 0.038 1.3E-06 42.7 0.6 39 356-400 35-74 (75)
32 2ykg_A Probable ATP-dependent 90.5 0.31 1.1E-05 50.7 6.1 51 10-61 475-525 (696)
33 3mwy_W Chromo domain-containin 90.5 0.31 1E-05 52.8 6.2 50 11-60 640-692 (800)
34 1z63_A Helicase of the SNF2/RA 88.3 0.32 1.1E-05 48.7 4.0 48 12-59 410-460 (500)
35 1z3i_X Similar to RAD54-like; 87.3 0.63 2.2E-05 49.1 5.7 49 13-61 486-537 (644)
36 4gl2_A Interferon-induced heli 86.6 0.91 3.1E-05 47.3 6.4 66 10-76 478-543 (699)
37 2fwr_A DNA repair protein RAD2 85.6 0.52 1.8E-05 46.7 3.8 49 11-59 409-461 (472)
38 3im1_A Protein SNU246, PRE-mRN 84.3 1.2 4E-05 43.3 5.5 53 350-402 159-213 (328)
39 3osn_A DNA polymerase IOTA; ho 82.1 3.3 0.00011 41.9 8.0 48 353-401 239-287 (420)
40 2ztd_A Holliday junction ATP-d 81.2 2.7 9.2E-05 39.2 6.4 48 356-403 96-147 (212)
41 1t5i_A C_terminal domain of A 80.9 1.4 4.9E-05 38.1 4.3 52 10-63 95-147 (172)
42 2q0z_X Protein Pro2281; SEC63, 80.6 2.4 8.1E-05 41.4 6.1 53 350-402 163-217 (339)
43 2hjv_A ATP-dependent RNA helic 79.8 2.4 8.1E-05 36.1 5.2 52 10-64 99-151 (163)
44 1u9l_A Transcription elongatio 79.4 2 6.9E-05 33.4 4.2 43 355-397 13-57 (70)
45 2p6n_A ATP-dependent RNA helic 76.8 2.3 7.8E-05 37.8 4.3 53 9-63 117-170 (191)
46 2va8_A SSO2462, SKI2-type heli 76.5 2.4 8.3E-05 44.6 5.1 48 352-401 661-709 (715)
47 2p6r_A Afuhel308 helicase; pro 76.1 2.2 7.5E-05 45.0 4.7 46 353-400 637-683 (702)
48 1fuk_A Eukaryotic initiation f 75.1 3.7 0.00012 34.9 5.0 43 10-52 94-137 (165)
49 3hgt_A HDA1 complex subunit 3; 74.3 2 7E-05 42.6 3.6 50 12-61 191-246 (328)
50 2kz3_A Putative uncharacterize 73.9 6.4 0.00022 31.6 5.8 48 354-401 10-59 (83)
51 1xti_A Probable ATP-dependent 73.9 2.8 9.7E-05 39.5 4.4 51 11-63 315-366 (391)
52 2rb4_A ATP-dependent RNA helic 72.9 3.1 0.00011 35.7 4.1 42 11-52 99-147 (175)
53 2jgn_A DBX, DDX3, ATP-dependen 72.6 4.3 0.00015 35.6 5.0 43 10-52 110-153 (185)
54 2aq4_A DNA repair protein REV1 71.0 4.7 0.00016 40.7 5.5 49 352-401 245-297 (434)
55 1b22_A DNA repair protein RAD5 71.0 3.3 0.00011 35.0 3.7 47 355-401 32-80 (114)
56 2z0m_A 337AA long hypothetical 69.0 3.3 0.00011 38.0 3.5 44 7-50 277-321 (337)
57 3eaq_A Heat resistant RNA depe 68.9 5.6 0.00019 35.6 5.0 42 11-52 96-138 (212)
58 3fht_A ATP-dependent RNA helic 68.6 4.6 0.00016 38.3 4.6 52 10-63 330-388 (412)
59 2edu_A Kinesin-like protein KI 68.1 2 6.8E-05 34.7 1.6 13 356-368 48-60 (98)
60 1hv8_A Putative ATP-dependent 67.6 6.8 0.00023 36.2 5.4 46 7-52 299-345 (367)
61 4dez_A POL IV 1, DNA polymeras 67.0 7.1 0.00024 38.1 5.7 49 352-401 182-231 (356)
62 3sqw_A ATP-dependent RNA helic 66.7 8.2 0.00028 39.6 6.3 52 10-64 355-407 (579)
63 3pey_A ATP-dependent RNA helic 66.2 5.6 0.00019 37.2 4.6 52 11-64 308-366 (395)
64 3oiy_A Reverse gyrase helicase 64.2 6.6 0.00023 37.9 4.8 54 10-68 315-376 (414)
65 1s5l_U Photosystem II 12 kDa e 61.9 4 0.00014 35.8 2.4 26 352-377 67-94 (134)
66 2zj8_A DNA helicase, putative 61.7 7.8 0.00027 40.9 5.1 48 352-400 650-700 (720)
67 2i4i_A ATP-dependent RNA helic 61.3 7.4 0.00025 37.1 4.5 46 7-52 337-383 (417)
68 1s2m_A Putative ATP-dependent 60.6 7.3 0.00025 36.9 4.3 41 12-52 324-365 (400)
69 2i1q_A DNA repair and recombin 59.7 12 0.00042 35.2 5.7 50 352-401 7-58 (322)
70 1pzn_A RAD51, DNA repair and r 58.4 12 0.0004 36.6 5.4 52 351-402 38-91 (349)
71 1exn_A 5'-exonuclease, 5'-nucl 58.2 4.1 0.00014 39.6 2.1 25 353-377 208-232 (290)
72 3i32_A Heat resistant RNA depe 57.9 10 0.00036 36.3 4.9 43 10-52 92-135 (300)
73 2d7d_A Uvrabc system protein B 57.7 17 0.00057 38.7 6.8 56 11-66 510-570 (661)
74 4e9f_A Methyl-CPG-binding doma 57.6 8.6 0.00029 34.2 3.9 42 360-401 52-97 (161)
75 1jx4_A DNA polymerase IV (fami 57.3 8.6 0.0003 37.4 4.3 49 353-402 183-232 (352)
76 3i5x_A ATP-dependent RNA helic 57.1 15 0.0005 37.1 6.0 51 10-63 406-457 (563)
77 3gqc_A DNA repair protein REV1 56.6 11 0.00039 39.1 5.2 48 353-401 320-368 (504)
78 2yjt_D ATP-dependent RNA helic 61.3 2.3 8E-05 36.5 0.0 53 9-64 93-146 (170)
79 1rxw_A Flap structure-specific 56.3 8.8 0.0003 37.4 4.1 25 353-377 240-264 (336)
80 3dmq_A RNA polymerase-associat 55.9 9.2 0.00032 42.5 4.7 49 11-59 571-622 (968)
81 3bq0_A POL IV, DBH, DNA polyme 55.6 8.4 0.00029 37.5 3.8 49 353-402 184-233 (354)
82 3q8k_A Flap endonuclease 1; he 55.5 5.8 0.0002 39.2 2.7 25 353-377 237-261 (341)
83 3eiq_A Eukaryotic initiation f 55.1 8 0.00027 36.7 3.5 43 10-52 344-387 (414)
84 2izo_A FEN1, flap structure-sp 54.7 9.1 0.00031 37.5 4.0 25 353-377 239-263 (346)
85 4ecq_A DNA polymerase ETA; tra 54.6 8.8 0.0003 38.8 3.9 49 353-402 258-308 (435)
86 2e8m_A Epidermal growth factor 53.8 34 0.0012 28.5 6.6 27 372-401 62-88 (99)
87 2db3_A ATP-dependent RNA helic 53.1 18 0.00061 35.6 5.8 42 10-51 364-406 (434)
88 1wwu_A Hypothetical protein FL 52.8 29 0.00099 28.9 6.1 28 372-401 52-79 (99)
89 4f4y_A POL IV, DNA polymerase 52.4 7.9 0.00027 38.1 3.1 49 352-401 183-232 (362)
90 1oyw_A RECQ helicase, ATP-depe 51.9 23 0.00078 36.2 6.5 43 10-52 300-343 (523)
91 1b43_A Protein (FEN-1); nuclea 51.8 11 0.00038 36.7 4.0 25 353-377 242-266 (340)
92 4f92_B U5 small nuclear ribonu 51.8 14 0.00047 44.0 5.4 52 351-402 729-780 (1724)
93 1c4o_A DNA nucleotide excision 50.6 19 0.00064 38.3 5.8 53 12-64 505-562 (664)
94 2j0s_A ATP-dependent RNA helic 50.1 12 0.00039 35.8 3.8 42 11-52 341-383 (410)
95 2bcq_A DNA polymerase lambda; 49.4 23 0.00077 34.8 5.8 66 295-377 59-126 (335)
96 1ul1_X Flap endonuclease-1; pr 49.0 11 0.00037 37.5 3.5 25 353-377 237-261 (379)
97 2ihm_A POL MU, DNA polymerase 47.7 9.8 0.00033 37.8 2.9 69 330-398 38-121 (360)
98 3ory_A Flap endonuclease 1; hy 46.4 7.8 0.00027 38.6 1.9 25 353-377 256-280 (363)
99 4f92_B U5 small nuclear ribonu 46.2 15 0.00053 43.6 4.7 53 351-403 1560-1614(1724)
100 1jms_A Terminal deoxynucleotid 46.0 13 0.00046 37.2 3.6 69 330-398 57-140 (381)
101 2i5h_A Hypothetical protein AF 42.8 13 0.00045 34.7 2.7 41 335-376 120-165 (205)
102 3arc_U Photosystem II 12 kDa e 42.1 8.4 0.00029 31.7 1.2 32 345-376 23-56 (97)
103 3lda_A DNA repair protein RAD5 40.2 31 0.001 34.6 5.2 47 354-400 89-137 (400)
104 3fmp_B ATP-dependent RNA helic 38.9 6.4 0.00022 38.9 0.0 55 7-63 394-455 (479)
105 2fmp_A DNA polymerase beta; nu 37.9 11 0.00037 37.1 1.4 70 329-398 33-117 (335)
106 1a76_A Flap endonuclease-1 pro 37.6 22 0.00076 34.3 3.6 22 353-375 230-251 (326)
107 1kea_A Possible G-T mismatches 35.5 31 0.0011 31.6 4.1 40 361-400 57-100 (221)
108 2lpe_A Kinase suppressor of RA 34.4 34 0.0012 30.5 3.9 45 356-401 95-143 (149)
109 1ji7_A ETS-related protein TEL 34.0 29 0.00097 28.0 3.1 30 369-400 43-72 (89)
110 1fuu_A Yeast initiation factor 33.3 9 0.00031 36.0 0.0 45 8-52 321-366 (394)
111 4b21_A Probable DNA-3-methylad 33.0 1.1E+02 0.0036 28.4 7.3 32 368-400 95-127 (232)
112 2fmp_A DNA polymerase beta; nu 32.7 81 0.0028 30.8 6.8 69 295-377 59-128 (335)
113 1z3e_B DNA-directed RNA polyme 32.0 30 0.001 27.0 2.8 34 367-401 28-63 (73)
114 4glx_A DNA ligase; inhibitor, 31.6 33 0.0011 36.5 4.0 49 354-402 452-503 (586)
115 3k4g_A DNA-directed RNA polyme 31.6 58 0.002 26.3 4.5 35 367-402 31-67 (86)
116 1x66_A Friend leukemia integra 31.5 25 0.00085 28.9 2.4 32 369-401 56-87 (98)
117 3fho_A ATP-dependent RNA helic 30.1 18 0.00061 36.6 1.6 43 10-52 421-470 (508)
118 1gm5_A RECG; helicase, replica 29.5 15 0.00052 40.1 1.0 55 11-65 654-710 (780)
119 1sv0_A ETS DNA-binding protein 29.3 39 0.0013 27.0 3.1 30 369-400 41-70 (85)
120 1orn_A Endonuclease III; DNA r 29.2 47 0.0016 30.6 4.1 40 361-400 55-98 (226)
121 1kg2_A A/G-specific adenine gl 29.1 61 0.0021 29.6 4.9 39 362-400 53-94 (225)
122 2e8p_A ELF3 protein; cell-free 28.1 38 0.0013 27.7 2.9 27 372-400 60-86 (92)
123 2bcq_A DNA polymerase lambda; 27.9 28 0.00095 34.2 2.5 69 330-398 34-115 (335)
124 1sxe_A Transcriptional regulat 27.5 25 0.00086 28.8 1.8 31 369-400 59-89 (97)
125 2owo_A DNA ligase; protein-DNA 27.2 47 0.0016 35.9 4.3 52 350-401 448-502 (671)
126 2abk_A Endonuclease III; DNA-r 26.7 29 0.00099 31.4 2.2 38 363-400 53-94 (211)
127 1dgs_A DNA ligase; AMP complex 26.7 41 0.0014 36.3 3.7 49 352-401 445-497 (667)
128 2z43_A DNA repair and recombin 26.4 17 0.00057 34.7 0.6 49 353-401 17-67 (324)
129 2w9m_A Polymerase X; SAXS, DNA 25.5 28 0.00096 36.4 2.1 42 354-395 103-147 (578)
130 2ytu_A Friend leukemia integra 25.2 36 0.0012 29.4 2.4 30 370-400 71-100 (128)
131 3s6i_A DNA-3-methyladenine gly 24.3 1.4E+02 0.0047 27.5 6.4 44 356-400 63-116 (228)
132 3qe9_Y Exonuclease 1; exonucle 24.2 76 0.0026 31.3 4.9 27 353-379 230-258 (352)
133 1sv0_C Modulator of the activi 24.0 56 0.0019 25.6 3.2 30 369-400 44-73 (82)
134 3n5n_X A/G-specific adenine DN 23.6 80 0.0027 30.5 4.8 40 361-400 71-113 (287)
135 1coo_A RNA polymerase alpha su 23.2 41 0.0014 27.8 2.3 35 367-402 43-79 (98)
136 3gfk_B DNA-directed RNA polyme 23.2 31 0.0011 27.4 1.5 34 367-401 35-70 (79)
137 1jms_A Terminal deoxynucleotid 22.8 1.2E+02 0.0042 30.1 6.2 67 295-375 82-149 (381)
138 1pu6_A 3-methyladenine DNA gly 22.1 79 0.0027 28.8 4.2 40 361-400 52-102 (218)
139 2qar_B Telsam domain; polymer, 22.0 63 0.0021 26.1 3.1 30 369-400 43-72 (93)
140 1sxd_A GA repeat binding prote 21.8 50 0.0017 26.7 2.5 28 370-400 55-82 (91)
141 2dkx_A SAM pointed domain-cont 21.3 54 0.0018 26.7 2.6 33 367-401 52-85 (96)
142 3lvj_C Sulfurtransferase TUSA; 21.2 70 0.0024 24.7 3.2 39 96-134 38-76 (82)
143 3hz7_A Uncharacterized protein 20.9 34 0.0011 27.1 1.3 39 96-134 30-68 (87)
144 2v1x_A ATP-dependent DNA helic 20.7 48 0.0016 34.6 2.7 41 10-50 331-372 (591)
145 3maj_A DNA processing chain A; 20.6 82 0.0028 31.7 4.3 55 335-401 24-86 (382)
146 3icx_A PRE mRNA splicing prote 20.2 43 0.0015 32.1 2.1 43 356-402 136-178 (255)
No 1
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=100.00 E-value=3.9e-43 Score=327.35 Aligned_cols=212 Identities=26% Similarity=0.369 Sum_probs=180.9
Q ss_pred CCCcEEEEeCCCCCCcchhHHHhCCcEEEEeecccccEEEeCCeEEEEechhHHHhhhccChHHHHHHHHHhhcCCeEEE
Q psy11328 95 ESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLL 174 (410)
Q Consensus 95 ~~~~~IIVD~RE~rS~lp~~L~~~Gv~v~~~~L~VGDYils~~i~VERKSi~DLi~Sl~~GRL~~Q~~~L~~~Y~~piLL 174 (410)
...+.||||+||++|.+|..|+.+|+++++++|++|||+|++++||||||++||++||++||||+|+.+|+++|++|+||
T Consensus 6 ~~~~~iivD~RE~~s~~~~~l~~~gv~~~~~~L~vgDy~~~~~~~VERKs~~Dl~~Si~~~Rl~~Q~~~l~~~~~~~~ll 85 (219)
T 2bgw_A 6 GGRPRVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLFEQASRLAEHYETVFII 85 (219)
T ss_dssp CSSCEEEEETTTTTSSHHHHHHHTTCEEEEECCSSSSEEEETTEEEEEEEHHHHHHHHHHSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEECCCcccHhHHHHHhCCCEEEEEEcCcCCEEeeCCeEEEeCCHHHHHHHhhcCcHHHHHHHHHHhcCCcEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccccccccchhhhhhhhhcCCCccccccccccccccccChHHHHHHHHHHHhhCCCeEEEecCChhhHH
Q psy11328 175 IEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTA 254 (410)
Q Consensus 175 IE~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~kL~~L~l~fp~l~IiwS~s~~eTA 254 (410)
||++.++. .+ .++ +.+++++|+.++++| +++|+||+|+++||
T Consensus 86 iE~d~~~~------~~---~~~----------------------------~~~i~~~l~~~~~~~-~~~vi~t~s~~eta 127 (219)
T 2bgw_A 86 VEGPPVPR------RY---RGR----------------------------ERSLYAAMAALQLDY-GIRLMNTMDPKGTA 127 (219)
T ss_dssp EESCSSCG------GG---TTT----------------------------HHHHHHHHHHHHHHS-CCEEEEESSHHHHH
T ss_pred EEecCccc------cc---cCC----------------------------HHHHHHHHHHHHHHC-CceEEEcCCHHHHH
Confidence 99986541 01 122 678999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccCCCCCCCccccccHHHHHHHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhh
Q psy11328 255 QLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASS 334 (410)
Q Consensus 255 ~ll~~Lk~~~eepd~~~a~~i~~~~~~~~~~~~~~~~~~~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (410)
++|..|++.. ++....+..++.... ...++.....+|.++||
T Consensus 128 ~~l~~l~~~~-~~~~~~ai~~~~~~~---~~~~~~~~~~~L~~i~g---------------------------------- 169 (219)
T 2bgw_A 128 LVIESLARLS-TREGGQRIVIHKKPR---LSDVREWQLYILQSFPG---------------------------------- 169 (219)
T ss_dssp HHHHHHHHHH-SCBCCTTCCCCCCCC---CCHHHHHHHHHHHTSTT----------------------------------
T ss_pred HHHHHHHHhc-ccccccccccccccc---cccHHHHHHHHHhcCCC----------------------------------
Confidence 9999999854 333233443432221 11234455568889999
Q ss_pred hhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 335 FFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
||+++|+.|+++|+|+.+|++++.++|.++-| .+..|+.|++||+.++
T Consensus 170 ---------------------Vg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~~ 218 (219)
T 2bgw_A 170 ---------------------IGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTPY 218 (219)
T ss_dssp ---------------------CCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSCC
T ss_pred ---------------------CCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999944 3589999999999876
No 2
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=100.00 E-value=7.6e-37 Score=271.32 Aligned_cols=134 Identities=35% Similarity=0.612 Sum_probs=119.9
Q ss_pred CCcEEEEeCCCCCCcchhHHHhCCcEEEEeecccccEEEeCCeEEEEechhHHHhhhccChHHHHHHHHHhhcCCeEEEE
Q psy11328 96 SCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI 175 (410)
Q Consensus 96 ~~~~IIVD~RE~rS~lp~~L~~~Gv~v~~~~L~VGDYils~~i~VERKSi~DLi~Sl~~GRL~~Q~~~L~~~Y~~piLLI 175 (410)
..+.||||+||++|++|..|++.|+++++++|++|||+|++++||||||++||++||+||||++|+.+|+++|++|+|||
T Consensus 3 ~~~~IiVD~RE~~s~~~~~L~~~gv~~~~~~L~vGDyi~~~~~~VERKs~~DL~~Si~dgRl~~Q~~rL~~~~~~~~~LI 82 (143)
T 1j23_A 3 EGVKVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGGLFDQVKRLKEAYSRPIMIV 82 (143)
T ss_dssp --CEEEEEGGGTTSHHHHHHHHTTCEEEEECCSSCSEECSSSEEEEEEEHHHHHHHHHTTCHHHHHHHHHHHCSEEEEEE
T ss_pred CCcEEEEECCCcchHhHHHHHHCCCeEEEEECCCCCEEecCCcEEEeccHHHHHHhhhcchHHHHHHHHHhcCCccEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcccccccccccchhhhhhhhhcCCCccccccccccccccccChHHHHHHHHHHHhhCCCeEEEecCChhhHHH
Q psy11328 176 EFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQ 255 (410)
Q Consensus 176 E~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~kL~~L~l~fp~l~IiwS~s~~eTA~ 255 (410)
||+. |.. +.++ +++++++|++++++| |++|+||+|+++||.
T Consensus 83 E~~~---~~~-------~~~~----------------------------~~~l~~al~~~~~~~-g~~vi~t~~~~~Ta~ 123 (143)
T 1j23_A 83 EGSL---YGI-------RNVH----------------------------PNAIRGAIAAVTVDF-GVPIIFSSTPEETAQ 123 (143)
T ss_dssp ESCC---TTC-------CSSC----------------------------HHHHHHHHHHHHHTS-CCCEEEESSHHHHHH
T ss_pred EcCC---ccc-------ccCC----------------------------HHHHHHHHHHHHHHc-CeeEEEcCCHHHHHH
Confidence 9982 221 1222 689999999999999 999999999999999
Q ss_pred HHHHHhcCCCCCCc
Q psy11328 256 LFFELKQGRDEPSA 269 (410)
Q Consensus 256 ll~~Lk~~~eepd~ 269 (410)
+|..|++ ++|++.
T Consensus 124 ~l~~l~~-~~q~~~ 136 (143)
T 1j23_A 124 YIFLIAK-REQEER 136 (143)
T ss_dssp HHHHHHH-HHHHC-
T ss_pred HHHHHHH-hhcccc
Confidence 9999988 444443
No 3
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=100.00 E-value=3.3e-35 Score=287.20 Aligned_cols=216 Identities=20% Similarity=0.232 Sum_probs=165.9
Q ss_pred CCCCcEEEEeCCCCCC-------cchhHHHhCCcEEEEeecccccEEE--eCC-------------------eEEEEech
Q psy11328 94 EESCGRVIVDMREFRS-------ELPVLLHKRGLYIEPVTISVGDYIL--SPD-------------------ICVERKSI 145 (410)
Q Consensus 94 ~~~~~~IIVD~RE~rS-------~lp~~L~~~Gv~v~~~~L~VGDYil--s~~-------------------i~VERKSi 145 (410)
+...+.||||+||+++ .++..|+..|+++++++|+||||+| +++ +||||||+
T Consensus 16 ~~~~~~ivvD~RE~~~~~~~~~~~~~~~l~~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~~~~~~~~e~vl~~~VERK~~ 95 (311)
T 2ziu_A 16 GSYDIVLCVDLCETTGGSSVRKQELVKELQRNSVTFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRM 95 (311)
T ss_dssp TSEEEEEEECGGGSCC-----CCHHHHHHHTTTCCEECCCCSSCSEEEEEEECCCCCTTCSSCCCCCEEEEEEEEEEEEH
T ss_pred CCcEEEEEEECccccCCccchHHHHHHHHHHCCCCeEEEecCccCEEEEEecCCCccccccccccCceeeeeeEeEeccH
Confidence 4557999999999987 6899999999999999999999995 432 79999999
Q ss_pred hHHHhhhccChHHHHHHHHHhh-cCCeEEEEEecCCCCcccccccccccchhhhhhhhhcCCCccccccccccccccccC
Q psy11328 146 SDLIGSLQSGRLYTQVQQMCRH-YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAK 224 (410)
Q Consensus 146 ~DLi~Sl~~GRL~~Q~~~L~~~-Y~~piLLIE~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~ 224 (410)
+||++||+||||++|+.+|+++ |++|+|||||+.+..+ .+.++
T Consensus 96 ~Dl~~Si~dgR~~~Q~~rl~~~g~~~~~ylIE~~~~~~~--------~~~~~---------------------------- 139 (311)
T 2ziu_A 96 DDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEECGSAAA--------HLSIP---------------------------- 139 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTSCSEEEEEEESCSSSHH--------HHSSC----------------------------
T ss_pred HHHHHHHhcchHHHHHHHHHhCCCCCeEEEEecCCcccc--------ccCCC----------------------------
Confidence 9999999999999999999999 9999999999854211 11121
Q ss_pred hHHHHHHHHHHHhhCCCeEEEecCChhhHHHHHHHHhcCCCC---CCcccccccCC------------CCCCCc------
Q psy11328 225 SSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDE---PSAEVASSIGQ------------TPNEDY------ 283 (410)
Q Consensus 225 ~~~I~~kL~~L~l~fp~l~IiwS~s~~eTA~ll~~Lk~~~ee---pd~~~a~~i~~------------~~~~~~------ 283 (410)
+.+|.++|+.+.++| +++|+||+|+.+||++|..|++...+ +++..+...+. ......
T Consensus 140 ~~~i~~aL~~l~v~~-g~~Vi~t~s~~eTa~~l~~lt~~i~~~y~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~ 218 (311)
T 2ziu_A 140 ESTLQQAIVNTQVVD-GFFVKRVQDAKESAAYLTIMTRYLQKLYQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTE 218 (311)
T ss_dssp HHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHHHHHHHHTTTTCCBCCC----------------CCSCSCCEEHHH
T ss_pred HHHHHHHHHHHhhhc-CeEEEEeCCHHHHHHHHHHHHHHHHHHhccccccccCcchhccccccccccccCcccccccHHH
Confidence 689999999999999 99999999999999999999874321 11100000000 000000
Q ss_pred ---------cccccHHHHHHHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCC
Q psy11328 284 ---------TDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRP 354 (410)
Q Consensus 284 ---------~~~~~~~~~~~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (410)
.........++|.++||
T Consensus 219 f~~~~~k~~~~t~~e~~~~mL~~IpG------------------------------------------------------ 244 (311)
T 2ziu_A 219 FNYGAIKNKCQTVREVFARQLMQISG------------------------------------------------------ 244 (311)
T ss_dssp HHHHHHHHTCCBHHHHHHHHHTTBTT------------------------------------------------------
T ss_pred HHHhcccccCCcHHHHHHHHHHhccC------------------------------------------------------
Confidence 00112234456666666
Q ss_pred CcCHHHHHHHHhcCCCHHHHHcCCHH-----H----HHHh--------hCCchhHHHHHHHhccC
Q psy11328 355 RVTSKNKAAVLNRGSSLPALCKLSEQ-----E----LCSL--------VENTTLGNALYKALHTR 402 (410)
Q Consensus 355 ~v~~~n~~~ll~~~~sl~~l~~~s~e-----e----L~~~--------~g~~~~a~~ly~fl~~~ 402 (410)
|++++|.+|+++|+|+.+|+++..+ | |+++ +|. +.+++||+||+..
T Consensus 245 -Vs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~-~lS~kI~~~f~~~ 307 (311)
T 2ziu_A 245 -VSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGP-ALSRTIYQLYCTR 307 (311)
T ss_dssp -CCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHH-HHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHHCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCH-HHHHHHHHHhccC
Confidence 9999999999999999999998744 3 6666 775 7899999999864
No 4
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=286.21 Aligned_cols=244 Identities=18% Similarity=0.171 Sum_probs=168.4
Q ss_pred CCCCcEEEEeCCCCCC-----cchhHHHhCCcEEEEeecccccEEE--eC--------------CeEEEEechhHHHhhh
Q psy11328 94 EESCGRVIVDMREFRS-----ELPVLLHKRGLYIEPVTISVGDYIL--SP--------------DICVERKSISDLIGSL 152 (410)
Q Consensus 94 ~~~~~~IIVD~RE~rS-----~lp~~L~~~Gv~v~~~~L~VGDYil--s~--------------~i~VERKSi~DLi~Sl 152 (410)
+...+.||||+||++| .++..|+..|+++++++|+||||+| ++ ++||||||++||++||
T Consensus 21 ~~~~~~ivvD~RE~~~~~~~~~~~~~L~~~gv~~~~~~L~vGDyi~i~~~~~~~~~~~~~e~vl~~iVERKs~~Dl~~Si 100 (307)
T 2zix_A 21 GEYRVLLCVDIGETRGGGHRPELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLCSSI 100 (307)
T ss_dssp TCCCCCCBCCSSSCCC---CCTTSTTTGGGCCCCCCCCCCSSSBBCCCCCCC----CCCCCCCCSEEECCCCTTTTHHHH
T ss_pred CCCEEEEEEECcccccCcchHHHHHHHHHCCCCeEEEeCCCCCEEEEEecCCCCcccccceeeeeeeeeeeeHHHHHHHh
Confidence 4567999999999997 7999999999999999999999998 55 4999999999999999
Q ss_pred ccChHHHHHHHHHhh-cCCeEEEEEecCCCCcccccccccccchhhhhhhhhcCCCccccccccccccccccChHHHHHH
Q psy11328 153 QSGRLYTQVQQMCRH-YAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231 (410)
Q Consensus 153 ~~GRL~~Q~~~L~~~-Y~~piLLIE~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~k 231 (410)
+||||++|+.+|+++ |++|+|||||+.+ + ..+.++ +.+|.++
T Consensus 101 ~dgRl~~Q~~rl~~~g~~~~~ylIE~~~~--~-------~~~~~~----------------------------~~~i~~a 143 (307)
T 2zix_A 101 IDGRFREQKFRLKRCGLERRVYLVEEHGS--V-------HNLSLP----------------------------ESTLLQA 143 (307)
T ss_dssp SSSHHHHHTTTTCTTTCBEEECCBSCCCS--S-------SSCSSC----------------------------HHHHHHH
T ss_pred cCCcHHHHHHHHHhCCCCCeEEEEecCCc--c-------cccCCC----------------------------HHHHHHH
Confidence 999999999999999 9999999999743 1 011122 6799999
Q ss_pred HHHHHhhCCCeEEEecCChhhHHHHHHHHhcCCCCCCcccccccCCCCCCCccccccHHHHH-HHHcCCCCchhhhhhhh
Q psy11328 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIED-FISKLPGMAEWSRARTL 310 (410)
Q Consensus 232 L~~L~l~fp~l~IiwS~s~~eTA~ll~~Lk~~~eepd~~~a~~i~~~~~~~~~~~~~~~~~~-~l~~lPgi~~~~~~~~~ 310 (410)
|+.+.+.+ +++|+||.|+.+||++|..|++...+--..+..... + .....+ ....+|+++... ..+
T Consensus 144 l~~l~~~~-~~~i~~t~~~~~Ta~~l~~lt~~l~e~y~~~~l~~~--~--------~~~~~~~~~~~~~~~~~~~--~~l 210 (307)
T 2zix_A 144 VTNTQVID-GFFVKRTADIKESAAYLALLTRGLQRLYQGHTLRSR--P--------WGTPGNPESGAMTSPNPLC--SLL 210 (307)
T ss_dssp HHHHHHSS-CCCCCBCCSHHHHTHHHHHHHTTTTTSSCSSCCCCC--C------------------------CCC--CSC
T ss_pred HHHHhhhc-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCccccc--c--------hhhhhhhhhhhccccCccc--ccc
Confidence 99999998 999999999999999999999865431000111111 0 000011 112333321100 000
Q ss_pred hhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHHHHHcCCHH-----H----
Q psy11328 311 NLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQ-----E---- 381 (410)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~e-----e---- 381 (410)
. | +-|...+..+.--+++-+..+.+-..||||+++|..|+++++|+.+|+++-.+ |
T Consensus 211 ~-------------f--~~f~~~~~Ks~~~tv~~v~~~~L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~l 275 (307)
T 2zix_A 211 T-------------F--SDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETL 275 (307)
T ss_dssp C-------------S--STTTTGGGTTTSCCTTTHHHHTTTCSTTCCSTTTTTSSSSSCSHHHHHHHHHCCSSGGGTTTT
T ss_pred c-------------H--HHHHHhhccccCCcHHHHHHHHHHhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHH
Confidence 0 0 00000000000001111112345566779999999999999999999988764 2
Q ss_pred HHHh--------hCCchhHHHHHHHhccCC
Q psy11328 382 LCSL--------VENTTLGNALYKALHTRP 403 (410)
Q Consensus 382 L~~~--------~g~~~~a~~ly~fl~~~~ 403 (410)
|+++ +|. +.+++||+||+...
T Consensus 276 L~~l~~g~~~r~IG~-~lSrkI~~~f~~~~ 304 (307)
T 2zix_A 276 LSTIKCGRLQRNLGP-ALSRTLSQLYCSYG 304 (307)
T ss_dssp TSCCCCTTTTCCCCH-HHHHHHHHHHTCSS
T ss_pred HHhcccCCCCCccCH-HHHHHHHHHHccCC
Confidence 6666 775 89999999998753
No 5
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=99.86 E-value=1.4e-24 Score=219.85 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=131.6
Q ss_pred CCcEEEEeecccccE--EEeCCeEEEEechhHHHhhhcc--ChHHHHHHHHHhhcCCeEEEEEecCCCCccccccccccc
Q psy11328 118 RGLYIEPVTISVGDY--ILSPDICVERKSISDLIGSLQS--GRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSR 193 (410)
Q Consensus 118 ~Gv~v~~~~L~VGDY--ils~~i~VERKSi~DLi~Sl~~--GRL~~Q~~~L~~~Y~~piLLIE~d~~~~f~l~~~~~~~r 193 (410)
.|..+...+-+-||| |+|+++||||||++||++||.| ||||+|+.+|++||++|+||||||.+..- ..|..|
T Consensus 320 DG~~~~I~~~PY~~~kdVVSDrV~VERKSVsDFInSLiDgdGRLFdQaerLarhYerPVLLIEGDLeEIe----~LYteR 395 (685)
T 4gfj_A 320 DGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIE----RMYEEG 395 (685)
T ss_dssp TTCHHHHHTSCHHHHHHHCTTCCHHHHHHHCHHHHHHHHTTCCCHHHHHHHHHHHSSHHHHHTSCHHHHH----HHHHTT
T ss_pred ccchhheeccCccchhhhcCcceEEEeCcHHHHHHHhhcCCCCHHHHHHHHHHhcCCCEEEEEeccHHhh----hhhccC
Confidence 588888888999999 9999999999999999999999 99999999999999999999999842210 123345
Q ss_pred chhhhhhhhhcCCCccccccccccccccccChHHHHHH----HHHHHhhCCCeEEEecCChhhHHHHHHHHhcCC---CC
Q psy11328 194 DIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK----LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR---DE 266 (410)
Q Consensus 194 ~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~k----L~~L~l~fp~l~IiwS~s~~eTA~ll~~Lk~~~---ee 266 (410)
.+| +++|+++ |++|+++| ++. ++||.+|....... +|
T Consensus 396 ~Ih----------------------------PNAIRGAveiqLASLAvkf-G~g-------~eTAe~L~~~agr~l~leq 439 (685)
T 4gfj_A 396 RLS----------------------------EEAYRAAVEIQLAELTKKE-GVG-------RKTAERLLRAFGNPERVKQ 439 (685)
T ss_dssp SSC----------------------------HHHHHHHHHHHHHHHHTST-TCC-------HHHHHHHHHHHSSHHHHHH
T ss_pred CCC----------------------------HHHHhhhHhhhhhhhhhhc-CCc-------hHHHHHHHHHhcchhhhhh
Confidence 555 7999999 69999999 776 89999998776530 11
Q ss_pred ----CCcccccccCCCCCCCccccccHHHHHHHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhc
Q psy11328 267 ----PSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRI 342 (410)
Q Consensus 267 ----pd~~~a~~i~~~~~~~~~~~~~~~~~~~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (410)
....+-..+..-+.+ .......+..+|.+|||
T Consensus 440 i~rdrEvgkL~SVpGikek--~sktL~eqeamLtAIaG------------------------------------------ 475 (685)
T 4gfj_A 440 LAREFEIEKLASVEGVGER--VLRSLVPGYASLISIRG------------------------------------------ 475 (685)
T ss_dssp HHHTTCHHHHHTSTTCCHH--HHHHHSTTHHHHHTSTT------------------------------------------
T ss_pred hhhhhhhhcccccccchhh--hhcccccceeeeeccCC------------------------------------------
Confidence 000000000000000 00000111345555555
Q ss_pred CCCCCCCCCCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC-CchhHHHHH
Q psy11328 343 KPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVE-NTTLGNALY 396 (410)
Q Consensus 343 ~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly 396 (410)
|++..|++||.+|||++.+.+|+++||.. -| ..+.|++|.
T Consensus 476 -------------IGp~tAeRLLEkFGSVe~Vm~AteDELRe-dGIGekqarrI~ 516 (685)
T 4gfj_A 476 -------------IDRERAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIRELK 516 (685)
T ss_dssp -------------CCHHHHHHHHHHHTSHHHHHHSCHHHHHH-TTCCHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHhcCHHHHHhCCHHHHHH-ccccHHHHHHHh
Confidence 99999999999999999999999999965 66 356677654
No 6
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=99.49 E-value=3.7e-16 Score=157.64 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=127.1
Q ss_pred cEEEEeecccccEEEeCCeEE--E-----E---echhHHHhhh-ccChHHH-HHHHHHhhcCC-eEEEEEecCCCCcccc
Q psy11328 120 LYIEPVTISVGDYILSPDICV--E-----R---KSISDLIGSL-QSGRLYT-QVQQMCRHYAK-PLLLIEFDHNKPFELQ 186 (410)
Q Consensus 120 v~v~~~~L~VGDYils~~i~V--E-----R---KSi~DLi~Sl-~~GRL~~-Q~~~L~~~Y~~-piLLIE~d~~~~f~l~ 186 (410)
+......|++||||.+.++|+ | | |.++|++.+| .+||||. |+++|.+.|+. |+||||+...
T Consensus 191 ~~~~L~~LE~~D~Vt~~DV~~~~qr~emvrri~~ei~~yv~eLG~dGRL~~~Ql~EL~~~~e~~~~LIIeDY~~------ 264 (377)
T 3c1y_A 191 LLSELEVLELENRVTLADVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTEDVDDLLVLLIMDYSS------ 264 (377)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHTTHHHHHHHHHHHHSS------
T ss_pred HHhhhhHhhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhcccccccEEEccCCc------
Confidence 344456799999999999988 8 8 9999999999 8999996 99999999998 9999995421
Q ss_pred ccccccc--chhhhhhhhhcCCCccccccccccccccccChHHHHHHHHHHHhhCCCeEEEecCChhhHHHHHHHHhcCC
Q psy11328 187 GNYYLSR--DIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGR 264 (410)
Q Consensus 187 ~~~~~~r--~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~kL~~L~l~fp~l~IiwS~s~~eTA~ll~~Lk~~~ 264 (410)
.+ ..+ ++++.++|++++. .|+.++|++|-.. .
T Consensus 265 -----~~~~~~~----------------------------~~aI~~aL~sLs~----------ld~~~~A~~Lg~~---~ 298 (377)
T 3c1y_A 265 -----EEVEEET----------------------------AQNILQDFITRRE----------PSPISISRVLGYD---V 298 (377)
T ss_dssp -----SCCCHHH----------------------------HHHHHHHHHTTSC----------CCHHHHHHHTTCC---C
T ss_pred -----cccCCCC----------------------------HHHHHHHHHhchh----------CCHHHHHHHhccc---h
Confidence 11 122 6799999987654 8999999998643 2
Q ss_pred CCCC--cccccccCCCCCCCccccccHHHHHHHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhc
Q psy11328 265 DEPS--AEVASSIGQTPNEDYTDRYNAAIEDFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRI 342 (410)
Q Consensus 265 eepd--~~~a~~i~~~~~~~~~~~~~~~~~~~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (410)
+|.. ....+ .+-...+|+++|+
T Consensus 299 eq~~~~~d~~V--------------sprGyRiLs~IPr------------------------------------------ 322 (377)
T 3c1y_A 299 QQAAQLDDVLV--------------SARGYRLLKTVAR------------------------------------------ 322 (377)
T ss_dssp SCGGGGGGCBC--------------CCCSHHHHHHTSC------------------------------------------
T ss_pred hccccccCccc--------------CchHHHHHhhCCC------------------------------------------
Confidence 1111 01111 1112349999999
Q ss_pred CCCCCCCCCCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 343 KPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 343 ~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
|+++.|.+|+++|+|++++++||.|||.+|-| .+..|+.|++-|..
T Consensus 323 -------------l~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r 369 (377)
T 3c1y_A 323 -------------IPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISS 369 (377)
T ss_dssp -------------CCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999976 46899999998764
No 7
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=99.31 E-value=3.3e-12 Score=104.28 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=44.5
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhCCchh-HHHHHHHhccCC
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTL-GNALYKALHTRP 403 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g~~~~-a~~ly~fl~~~~ 403 (410)
||++|++.||.+|+|+++|++||.|||++++|. +. |+.||+|||.++
T Consensus 26 IG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig~-~~~A~~I~~~l~~~~ 73 (84)
T 1z00_B 26 VNAKNCRSLMHHVKNIAELAALSQDELTSILGN-AANAKQLYDFIHTSF 73 (84)
T ss_dssp CCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHSC-HHHHHHHHHHHTSBH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhCc-hHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999997 56 999999999865
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=99.23 E-value=9.3e-12 Score=96.05 Aligned_cols=48 Identities=29% Similarity=0.449 Sum_probs=45.5
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhCCchh-HHHHHHHhccCCc
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTL-GNALYKALHTRPE 404 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g~~~~-a~~ly~fl~~~~~ 404 (410)
||+++++.||++|+|+++|++||.|||++++|. +. |+.||+|||.++.
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~-~~~A~~I~~~l~~~~~ 60 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGN-AANAKQLYDFIHTSFA 60 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSC-HHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCc-hHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999997 56 9999999998764
No 9
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=98.40 E-value=9e-07 Score=78.99 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=95.0
Q ss_pred CCcEEEEeCCCCCCcchhHHHhCCcEEEEeecccccEEEeCCeEEEEechhHHHhhhccChH-----HHHHHHHHhhcCC
Q psy11328 96 SCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRL-----YTQVQQMCRHYAK 170 (410)
Q Consensus 96 ~~~~IIVD~RE~rS~lp~~L~~~Gv~v~~~~L~VGDYils~~i~VERKSi~DLi~Sl~~GRL-----~~Q~~~L~~~Y~~ 170 (410)
..-.|+|..|.. +.|-+=+-+++.++...+ +.||+++...|| |+-||+..|| +++++.|.+.|..
T Consensus 16 ~~~~IlVs~rQk--GNPlL~~irnv~we~~dI-~~Dyvvg~~tcv-------LFLSLkYH~L~PeYI~~Ri~~L~~~y~l 85 (146)
T 2a1i_A 16 KSNSIIVSPRQR--GNPVLKFVRNVPWEFGDV-IPDYVLGQSTCA-------LFLSLRYHNLHPDYIHGRLQSLGKNFAL 85 (146)
T ss_dssp --CCEEECGGGT--TCGGGGGCCSSCEEECCC-SSSEEEETTEEE-------EEEEHHHHHHSTTHHHHHHHHHTTSSSE
T ss_pred CCceEEECchhc--CChHHHHHhcCCeEecCc-CCCEEecCeeEE-------EEEecHHhccCHHHHHHHHHHhccccce
Confidence 456899999987 455332346789999875 899999999999 9999998885 9999999999999
Q ss_pred eEEEEEecCCCCcccccccccccchhhhhhhhhcCCCccccccccccccccccChHHHHHHHHHHHhhCCCeEEEecCCh
Q psy11328 171 PLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGP 250 (410)
Q Consensus 171 piLLIE~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~~~~~~~I~~kL~~L~l~fp~l~IiwS~s~ 250 (410)
.|||+=-|..++ ..+...|..+++.. ++.+|-++|.
T Consensus 86 rVLL~~VDv~d~-------------------------------------------~~~L~eL~~~c~~~-~~TLiLawS~ 121 (146)
T 2a1i_A 86 RVLLVQVDVKDP-------------------------------------------QQALKELAKMCILA-DCTLILAWSP 121 (146)
T ss_dssp EEEEEECCSSSC-------------------------------------------HHHHHHHHHHHHHH-TCEEEEESSH
T ss_pred EEEEEEEeCCCh-------------------------------------------HHHHHHHHHHHHHc-CCEEEEECCH
Confidence 999999985431 23344788888877 9999999999
Q ss_pred hhHHHHHHHHhcCCCC
Q psy11328 251 YNTAQLFFELKQGRDE 266 (410)
Q Consensus 251 ~eTA~ll~~Lk~~~ee 266 (410)
+|+|.+|..+|..+..
T Consensus 122 eEaa~Yle~~k~~e~k 137 (146)
T 2a1i_A 122 EEAGRYLETYKAYEQK 137 (146)
T ss_dssp HHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999996543
No 10
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=98.22 E-value=1.5e-06 Score=70.12 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=47.3
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccCCcCCCC
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTRPEVSSG 408 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~~~~~~~ 408 (410)
||++.|+.|+++|+|+.++++++.++|.++ +|. ..|..|+.||+.++..+-+
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~-~~a~~I~~~l~~~~~~~~~ 80 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGP-QKARRLFDVLHEPFLKVPG 80 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCH-HHHHHHHHHHHSCSSSCSS
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCH-HHHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999999 664 8999999999999875543
No 11
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=98.03 E-value=5.7e-06 Score=67.08 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=44.7
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccCCc
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTRPE 404 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~~~ 404 (410)
|+++.|+.|+++|+|+.+|++++.++|.++ +|. ..|+.|+.||+.++.
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~-~~a~~I~~~l~~~~~ 89 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGP-QKARRLFDVLHEPFL 89 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCS-HHHHHHHHHHHSCSC
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCH-HHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999 665 899999999998764
No 12
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=97.78 E-value=2.2e-05 Score=60.31 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=45.1
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccCCcC
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTRPEV 405 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~~~~ 405 (410)
|+++.|+.|+++|+|+.+|.+++.++|..+ +|. ..|..|+.+|+.++..
T Consensus 22 iG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~-~~a~~i~~~~~~~~~~ 72 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGE-KIAKEIRRVITAPYIE 72 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCH-HHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCH-HHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999 554 8999999999988754
No 13
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=97.70 E-value=4.2e-05 Score=72.37 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
||++.++.|+++|+|++.|.++|.|||.+++|....|+.||+||+
T Consensus 176 IG~k~ak~Ll~~FgSl~~i~~As~EeL~~VIG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 176 IGPIRKKKLIEHFGSLENIRSASLEEIARVIGSTEIARRVLDILG 220 (220)
T ss_dssp CCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHTCHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhChHHHHHHHHHHhC
Confidence 999999999999999999999999999999974168999999985
No 14
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.65 E-value=2.6e-05 Score=61.37 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSL--VENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~ 401 (410)
-.|||+++.|+.|+++|+|+.++.+++.++|.++ +|. ..|..|++||+.
T Consensus 28 ~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~-~~a~~I~~~~~~ 78 (78)
T 1kft_A 28 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQ-GLAEKIFWSLKH 78 (78)
T ss_dssp GCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTS-HHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCH-HHHHHHHHHHhC
Confidence 3578999999999999999999999999999999 665 899999999863
No 15
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=97.36 E-value=2.7e-05 Score=73.93 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHh-hCCchhHHHHHHHhcc
Q psy11328 350 SNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSL-VENTTLGNALYKALHT 401 (410)
Q Consensus 350 ~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~-~g~~~~a~~ly~fl~~ 401 (410)
+.-.||||++.++.|+++|+|++.|.++|.|||.++ +| +..|+.||+|||.
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~VGIG-~~~A~~I~~~f~~ 226 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRANIP-RAVAEKIYEKLHE 226 (226)
T ss_dssp -----------------------------------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHcCCC-HHHHHHHHHHhhC
Confidence 344688999999999999999999999999999999 54 4899999999973
No 16
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.15 E-value=0.00047 Score=74.45 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred HHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHHH
Q psy11328 294 FISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPA 373 (410)
Q Consensus 294 ~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~ 373 (410)
-|..+||+++++..+.++.- |.-+...++..||-+ -.|||++++++.|+++|+|+..
T Consensus 481 ~L~~l~gfG~Ksa~nLl~aI--------------e~sk~~~l~R~L~al---------gi~~VG~~~Ak~La~~Fgsl~~ 537 (671)
T 2owo_A 481 KLTGLERMGPKSAQNVVNAL--------------EKAKETTFARFLYAL---------GIREVGEATAAGLAAYFGTLEA 537 (671)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--------------HHHTBCCHHHHHHHT---------TCTTCCHHHHHHHHHHHCSHHH
T ss_pred HhhcccccchhHHHHHHHHH--------------HHHhcCChhheehhh---------cccCccHHHHHHHHHHcCCHHH
Confidence 46788998887766555421 122333344555543 2467999999999999999999
Q ss_pred HHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 374 LCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 374 l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
|.++|.+||..+-| ....|+.|++||+.+
T Consensus 538 l~~As~eeL~~i~GIG~~~A~sI~~ff~~~ 567 (671)
T 2owo_A 538 LEAASIEELQKVPDVGIVVASHVHNFFAEE 567 (671)
T ss_dssp HHTCCHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred HHhCCHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 99999999999944 248999999999875
No 17
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.12 E-value=0.00038 Score=67.06 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=50.0
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAF 70 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af 70 (410)
++-...++||+|||..+...-+|+.||++|..++++|.|+.++|.||..|+...+||+.|.
T Consensus 433 ldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 4555689999999999999999999999998889999999999999999999999998774
No 18
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=96.96 E-value=0.0061 Score=60.62 Aligned_cols=158 Identities=15% Similarity=0.025 Sum_probs=92.6
Q ss_pred CCcEEEEeCCCCCC----cchhHHHhCCcEEEEeecccccEEE-e--------------CCeEEEEechhHHHhhhccC-
Q psy11328 96 SCGRVIVDMREFRS----ELPVLLHKRGLYIEPVTISVGDYIL-S--------------PDICVERKSISDLIGSLQSG- 155 (410)
Q Consensus 96 ~~~~IIVD~RE~rS----~lp~~L~~~Gv~v~~~~L~VGDYil-s--------------~~i~VERKSi~DLi~Sl~~G- 155 (410)
....|+||..-... .+-..|...|+++.....+++.=|. - ...++=.-+..+|++.+.++
T Consensus 21 k~~~v~lD~~ll~~~~g~~ll~~L~~~~~~~~i~~~~ip~sI~WrRkv~~~~d~~~~~~E~~vl~~l~a~eF~~~v~~~~ 100 (341)
T 2ziu_B 21 KHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPSEDREDWVEEPTVLVLLRAEAFVSMIDNGK 100 (341)
T ss_dssp GGCEEEECHHHHTSTTHHHHHHHHHHSSCEEEECCCSSTTEEEEEC---------CCCBCSCEEEEEEHHHHHHHHHCCC
T ss_pred ceEEEEEChHHhhcccHHHHHHHHHhCCCeEEEEecCCCceEEEEEecCCCCCcccceEccEEEEEEEHHHHHHHHhhcc
Confidence 45788888776543 2556788899999877777765432 1 12445566778888888873
Q ss_pred ------------hHHHHHHHHHhhc--CCeEEEEEecCCCCcccccccccccchhhhhhhhhcCCCcccccccccccccc
Q psy11328 156 ------------RLYTQVQQMCRHY--AKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDI 221 (410)
Q Consensus 156 ------------RL~~Q~~~L~~~Y--~~piLLIE~d~~~~f~l~~~~~~~r~i~~~~~~~~~~~~pf~~q~~~~~~~~~ 221 (410)
-|-.-+.++...| .+.+|||||= .+-|.... .. .+.-.. +. ...+. ...++.-.+...
T Consensus 101 ~~~~~~~~~~~~tL~~~v~~l~~~~p~~~~~llI~Gl-~~~~~~~~-~~-~~~~~~---~~-~~~~~-~~~~~~~~~~~~ 172 (341)
T 2ziu_B 101 QGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQ-EKCFSAQN-PP-RRGKQG---AN-KQTKK-QQQRQPEASIGS 172 (341)
T ss_dssp ------------CCTHHHHHHHHHHTSCCEEEEEECC-C-----------------------------------------
T ss_pred cccccccccccchHHHHHHHHHhhCCCCeEEEEEecH-HHHHHhhh-hh-hhhhhh---hc-ccccc-cccccccCCCCC
Confidence 5677778888877 4688999973 12111000 00 000000 00 00000 000000000001
Q ss_pred ccChHHHHHHHHHHHhhCCCeEEEecCChhhHHHHHHHHhc
Q psy11328 222 AAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFELKQ 262 (410)
Q Consensus 222 ~~~~~~I~~kL~~L~l~fp~l~IiwS~s~~eTA~ll~~Lk~ 262 (410)
.....+|..+|+.+.+.. ++.|..+.+..|||++|..+.+
T Consensus 173 ~~~~~~ie~Al~~lqv~~-~~~v~~t~~~~Et~~~l~~~T~ 212 (341)
T 2ziu_B 173 MVSRVDAEEALVDLQLHT-EAQAQIVQSWKELADFTCAFTK 212 (341)
T ss_dssp --CHHHHHHHHHHHHHHC-SCBCCEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHheeec-CEEEEEeCCHHHHHHHHHHHHH
Confidence 123578999999999988 9999999999999999998875
No 19
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.95 E-value=0.0013 Score=71.13 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=64.6
Q ss_pred HHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHHH
Q psy11328 294 FISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPA 373 (410)
Q Consensus 294 ~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~ 373 (410)
-|..+||+++++..+.++.- |..+...++..||-+ -.|||++++++.|+++|+|+..
T Consensus 476 ~L~~l~g~G~Ksa~nLl~aI--------------e~sk~~~l~R~L~al---------GI~~VG~~~Ak~La~~Fgsl~~ 532 (667)
T 1dgs_A 476 DLLGLERMGEKSAQNLLRQI--------------EESKHRGLERLLYAL---------GLPGVGEVLARNLARRFGTMDR 532 (667)
T ss_dssp HHHTTSSCCSTTHHHHHHHH--------------HHGGGCCHHHHHHHT---------TCSSCCHHHHHHHHHTTSBHHH
T ss_pred HHhcccccchhhHHHHHHHH--------------HHHhcCcHHHhhHhh---------ccCCccHHHHHHHHHHcCCHHH
Confidence 46688998887766555521 122333445555543 2366999999999999999999
Q ss_pred HHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 374 LCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 374 l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
|.++|.++|.++-| ....|+.|++||+.+.
T Consensus 533 l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 563 (667)
T 1dgs_A 533 LLEASLEELIEVEEVGELTARAILETLKDPA 563 (667)
T ss_dssp HTTCCHHHHHTSTTCCHHHHHHHHHHHHCHH
T ss_pred HHhCCHHHHHhccCcCHHHHHHHHHHHhhHH
Confidence 99999999999944 2489999999998753
No 20
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=96.85 E-value=0.0012 Score=70.38 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHH
Q psy11328 293 DFISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLP 372 (410)
Q Consensus 293 ~~l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~ 372 (410)
+=|..+||++++++.+.++.- |.-|.-.++..||-+ -.|+||+++|+.|.++|+|+.
T Consensus 480 ~~L~~l~g~geKsa~nL~~aI--------------e~sk~~~l~r~l~aL---------GI~~vG~~~a~~La~~f~sl~ 536 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNAL--------------EKAKETTFARFLYAL---------GIREVGEATAAGLAAYFGTLE 536 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH--------------HHHTBCCHHHHHHHT---------TCTTCCHHHHHHHHHHHCSHH
T ss_pred HHHhcccCccHHHHHHHHHHH--------------HHHcCCCHHHHHHHc---------CCCchhHHHHHHHHHHcCCHH
Confidence 347899999998887776631 233444556666665 246699999999999999999
Q ss_pred HHHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 373 ALCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 373 ~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
.|.++|.|||.++-| ....|+.|++||+.+
T Consensus 537 ~l~~a~~e~l~~i~giG~~~A~si~~ff~~~ 567 (586)
T 4glx_A 537 ALEAASIEELQKVPDVGIVVASHVHNFFAEE 567 (586)
T ss_dssp HHHHCCHHHHTTSTTCCHHHHHHHHHHHHSH
T ss_pred HHHccCHHHHhcCCCccHHHHHHHHHHHcCH
Confidence 999999999999955 358999999999865
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.12 E-value=0.0065 Score=60.83 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=45.7
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af~~Li~~k 77 (410)
|+-...++||.||+..+..+-+|+-|| +|..++++|+|+.+++.+|. |+....+|+.|.+.+.+.+
T Consensus 467 iDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~i~ 532 (556)
T 4a2p_A 467 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKIQ 532 (556)
T ss_dssp ------CEEEEETCCSCHHHHHHC---------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHHhh
Confidence 456678999999999999999999999 88889999999999998888 7777888888877776554
No 22
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.94 E-value=0.0094 Score=54.95 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhcCCC---HHHHHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 356 VTSKNKAAVLNRGSS---LPALCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 356 v~~~n~~~ll~~~~s---l~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
||+|-|.+|+++|++ ...+.+.+.++|.++-| .++.|++|+..|+.+.
T Consensus 80 IGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 80 VGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999 99999999999999944 3478999999998875
No 23
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.78 E-value=0.0016 Score=69.76 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccCCc
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTRPE 404 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~~~ 404 (410)
.||||++.++.|+++|+|+..|.++|.|||.++ +|. ..|+.|++||+.+.+
T Consensus 534 Ip~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~-~~A~sI~~ff~~~~n 586 (615)
T 3sgi_A 534 IRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGP-TIAAAVTEWFAVDWH 586 (615)
T ss_dssp ------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCH-HHHHHHHHHHcCHHH
Confidence 477999999999999999999999999999999 554 899999999998753
No 24
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.63 E-value=0.013 Score=54.36 Aligned_cols=48 Identities=21% Similarity=0.150 Sum_probs=43.2
Q ss_pred cCHHHHHHHHhcCCC---HHHHHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 356 VTSKNKAAVLNRGSS---LPALCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 356 v~~~n~~~ll~~~~s---l~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
||+|-|.+||++|++ ...+.+++.++|.++-| .++.|++|+..|+.+.
T Consensus 81 IGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~kl 132 (203)
T 1cuk_A 81 VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRF 132 (203)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999 99999999999999944 3478999999997765
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.56 E-value=0.015 Score=62.68 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=50.1
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKT 78 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af~~Li~~k~ 78 (410)
|+-...++||.||+.-+..+-+|+-|| +|..+++||+|+.+++.+|. |+....+|+.|.+.+.+.+.
T Consensus 708 IDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l~~ 774 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKIQK 774 (797)
T ss_dssp ---CCCSEEEEESCCSCHHHHHTC--------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 566789999999999999999999999 88889999999999998888 88888888888887766543
No 26
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.80 E-value=0.029 Score=62.04 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=49.1
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af~~Li~~k 77 (410)
|+-...++||.||+.-+..+-+|+-|| +|..+++||+|+.+++.+|. ++....+|+.|.+.+.+.+
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee~-~~~~~~ke~~~~~~i~~l~ 773 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKIQ 773 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC--------CCCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 566789999999999999999999999 88889999999999998886 5677788888888776554
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.27 E-value=0.045 Score=54.42 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=54.1
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEK 77 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af~~Li~~k 77 (410)
|+-...++||.||+..+..+-+|+-|| +|..++++|+|+..++.++. ++-...+|+-+...+...+
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~ 531 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESILRLQ 531 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHHhcc
Confidence 345678999999999999999999999 77789999999999888777 6666777777766665443
No 28
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.82 E-value=0.095 Score=40.84 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=42.0
Q ss_pred CCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhc
Q psy11328 352 PRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVE-NTTLGNALYKALH 400 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~ 400 (410)
-+|||++..+.+|-.+ +.|+.+|+.++.++|..+.| ++..|..|...-+
T Consensus 11 ~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 11 NLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp SSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 3567999999999985 99999999999999999999 6778888775544
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.51 E-value=0.013 Score=55.86 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSL--VENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~ 401 (410)
-.||||++.+..|+++ |+|+.+|.+++.++|..+ +|. ..|++|+++++.
T Consensus 19 ~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~-ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 19 DISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGN-ALAARIKADVGG 70 (241)
T ss_dssp -----------------------------------------------------
T ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCH-HHHHHHHHHHHH
Confidence 3578999999999998 999999999999999999 554 789999998865
No 30
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=91.88 E-value=0.15 Score=48.41 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=31.5
Q ss_pred hCCCEEEEEcCCchhhhhhhhhhcccC---CCceEEEEEEeCCcHHHHHH
Q psy11328 13 LKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAY 59 (410)
Q Consensus 13 ~~p~~VI~Yep~~s~IR~IE~y~~~~~---~~~~~Vy~L~y~~S~EE~~y 59 (410)
...+.||+|||.-..-..+|+-+|++| ..++.||.+++.+|+||..|
T Consensus 182 ~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~ 231 (271)
T 1z5z_A 182 TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 231 (271)
T ss_dssp TTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHH
T ss_pred ccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHH
Confidence 457899999999888888999888876 34789999999999998754
No 31
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=91.83 E-value=0.038 Score=42.72 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=31.5
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhc
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVE-NTTLGNALYKALH 400 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~ 400 (410)
||++.|.+|++++ -..|.+||.++-| ..+.+++|+.||+
T Consensus 35 IG~~~A~~Il~~r------~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 35 IGPVLARRIVEGR------PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp CCHHHHHHHHHTC------CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred CCHHHHHHHHHHc------ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 8899999999987 3588888988855 3478999988875
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.54 E-value=0.31 Score=50.73 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=32.1
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLS 61 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~ 61 (410)
|+-...++||.||+..+...-+|+-|| +|..++.+++|+.+++.++..++.
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~ 525 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQIN 525 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHHHHHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHH
Confidence 455678999999999999999999999 988899999999988887776553
No 33
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.31 Score=52.80 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=43.0
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccC---CCceEEEEEEeCCcHHHHHHH
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYL 60 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~---~~~~~Vy~L~y~~S~EE~~yl 60 (410)
+-...+.||+|||.-+..+.+|+-+|.+| ..++.||-|++++|+||..|-
T Consensus 640 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~ 692 (800)
T 3mwy_W 640 NLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692 (800)
T ss_dssp CCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHH
T ss_pred CccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH
Confidence 33457999999999999999999999887 458999999999999997654
No 34
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=88.33 E-value=0.32 Score=48.66 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=37.8
Q ss_pred hhCCCEEEEEcCCchhhhhhhhhhcccC---CCceEEEEEEeCCcHHHHHH
Q psy11328 12 SLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAY 59 (410)
Q Consensus 12 ~~~p~~VI~Yep~~s~IR~IE~y~~~~~---~~~~~Vy~L~y~~S~EE~~y 59 (410)
-...+.||+|||.-+...-+|+-||++| ..++.||.+++.+|+||..|
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~ 460 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 460 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTH
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHH
Confidence 3467899999999988899999998876 35789999999999988643
No 35
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=87.29 E-value=0.63 Score=49.11 Aligned_cols=49 Identities=6% Similarity=0.165 Sum_probs=41.4
Q ss_pred hCCCEEEEEcCCchhhhhhhhhhcccC---CCceEEEEEEeCCcHHHHHHHH
Q psy11328 13 LKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLS 61 (410)
Q Consensus 13 ~~p~~VI~Yep~~s~IR~IE~y~~~~~---~~~~~Vy~L~y~~S~EE~~yl~ 61 (410)
...+.||+|||.-..-..+|+-+|.+| ..++.||-+++.+|+||..|-.
T Consensus 486 ~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~ 537 (644)
T 1z3i_X 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQR 537 (644)
T ss_dssp TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHH
T ss_pred ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHH
Confidence 456899999999888899999998876 3578999999999999986643
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=86.55 E-value=0.91 Score=47.26 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=52.7
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHh
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQE 76 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rEk~af~~Li~~ 76 (410)
|+-...++||.||+..+..+-+|+-||.++. ...++++...++.+..+++.....|+.+-..+...
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARAD-ESTYVLVAHSGSGVIERETVNDFREKMMYKAIHCV 543 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSS-SCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCC-CceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455789999999999999999999997654 47777777788888888888888888777766543
No 37
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=85.56 E-value=0.52 Score=46.70 Aligned_cols=49 Identities=4% Similarity=-0.065 Sum_probs=37.4
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccCCC----ceEEEEEEeCCcHHHHHH
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSEV----KVKVFFMQYGESVEEQAY 59 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~----~~~Vy~L~y~~S~EE~~y 59 (410)
+-...++||+|++.-+...-+|+.||++|.. .+.||.++.++|.||..+
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~ 461 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHH
Confidence 4456789999999999999999999988743 567888999999999743
No 38
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=84.31 E-value=1.2 Score=43.35 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=45.1
Q ss_pred CCCCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 350 SNPRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 350 ~~~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
+.-+|||+.+.++++-++ +.|+++|.+++.+++.+++| ++..++.++++++.=
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~ 213 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNY 213 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhC
Confidence 445688999999998764 78999999999999999988 445799999999863
No 39
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=82.10 E-value=3.3 Score=41.86 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 353 RPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 353 ~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
.|||+.+-+..|-. .+.|+.+|.+++.+.|.+.+|. ..|..||+..+.
T Consensus 239 l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~-~~g~~L~~~a~G 287 (420)
T 3osn_A 239 IPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI-SVAQRIQKLSFG 287 (420)
T ss_dssp STTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCc-hHHHHHHHHhcC
Confidence 35699998888865 4789999999999999999995 579999998754
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=81.18 E-value=2.7 Score=39.24 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=36.0
Q ss_pred cCHHHHHHHHhcCCC---HHHHHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 356 VTSKNKAAVLNRGSS---LPALCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 356 v~~~n~~~ll~~~~s---l~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
|++|.|.+|++.|+. ...+.+.+.+.|.++=| .++.|++|..-|..+.
T Consensus 96 IGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 96 VGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 788888888888877 56678888888888854 3477888777666654
No 41
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=80.91 E-value=1.4 Score=38.11 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=37.8
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
++-...++||+||+..+.-.-+|+-||++|. ..+.+++++... ++..++..+
T Consensus 95 ldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~~l 147 (172)
T 1t5i_A 95 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE--NDAKILNDV 147 (172)
T ss_dssp CCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH--HHHHHHHHH
T ss_pred cchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh--hHHHHHHHH
Confidence 3445689999999998888889999999874 467777776543 345555444
No 42
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=80.56 E-value=2.4 Score=41.40 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 350 SNPRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 350 ~~~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
+.-+|||+...++++-++ +.|+.+|.+++.+++..++| ++..++.++++++.=
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~ 217 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRY 217 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTS
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 344678999999998775 58999999999999999998 445679999999873
No 43
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=79.84 E-value=2.4 Score=36.14 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=38.7
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDLR 64 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si~ 64 (410)
++-...++||.|++..+...-+|+-||++|. .++.++.++... +..|+..+.
T Consensus 99 ld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~---~~~~~~~i~ 151 (163)
T 2hjv_A 99 IDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF---EKRFLADIE 151 (163)
T ss_dssp CCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG---GHHHHHHHH
T ss_pred CchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH---HHHHHHHHH
Confidence 3445689999999998888899999999885 477887777643 454555443
No 44
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=79.37 E-value=2 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=37.4
Q ss_pred CcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHH
Q psy11328 355 RVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYK 397 (410)
Q Consensus 355 ~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~ 397 (410)
||++..+..|.. -|.|++++..++.++|..+-| ++..|..|-+
T Consensus 13 gI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 13 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp TCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 599999999998 599999999999999999998 6667776654
No 45
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=76.76 E-value=2.3 Score=37.76 Aligned_cols=53 Identities=15% Similarity=-0.021 Sum_probs=38.1
Q ss_pred hhhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 9 KLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 9 ~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
=++-...++||.||+..+.-.-+|+-||++|. .++.++.++... ++..++..+
T Consensus 117 Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~--~~~~~~~~l 170 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA--CDESVLMDL 170 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT--SCHHHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc--hhHHHHHHH
Confidence 34556789999999998888899999999885 467777776543 244455444
No 46
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=76.46 E-value=2.4 Score=44.62 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=42.4
Q ss_pred CCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
-.|||+..-|+.|.++ ++|+++|+ ++.++|.+++| +..|+++++.++.
T Consensus 661 qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~ 709 (715)
T 2va8_A 661 QISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAAR 709 (715)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHH
Confidence 4567999999999985 69999999 99999999998 6889999986654
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=76.10 E-value=2.2 Score=45.01 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 353 RPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
.|||+...|+.|-++ ++|+++|++++ ++|.+++| +..|+++++.++
T Consensus 637 lp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~-~~~~~~i~~~~~ 683 (702)
T 2p6r_A 637 IRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG-RGIAERVVEGIS 683 (702)
T ss_dssp STTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC-hhHHHHHHHhcC
Confidence 456999999999985 99999999999 99999999 689999999887
No 48
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=75.08 E-value=3.7 Score=34.93 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=33.0
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
++-...++||.||+..+...-+|+.||++|. .++.++.++..+
T Consensus 94 ~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 137 (165)
T 1fuk_A 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 137 (165)
T ss_dssp CCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch
Confidence 3445789999999998888889999999885 578888888765
No 49
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=74.33 E-value=2 Score=42.59 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=32.7
Q ss_pred hhCCCEEEEEcCC--chh--hhhhhhhhcc--cCCCceEEEEEEeCCcHHHHHHHH
Q psy11328 12 SLKPTSVIFYNAD--VAA--IRQVEVYQCA--QSEVKVKVFFMQYGESVEEQAYLS 61 (410)
Q Consensus 12 ~~~p~~VI~Yep~--~s~--IR~IE~y~~~--~~~~~~~Vy~L~y~~S~EE~~yl~ 61 (410)
-..+|.||+|||+ |+. |..+-|..|. +...++.||-|+..+|+||....-
T Consensus 191 l~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 191 KARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 4679999999997 332 4545444444 346789999999999999975443
No 50
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=73.91 E-value=6.4 Score=31.56 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=39.3
Q ss_pred CCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 354 PRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 354 ~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
||.++.....|-+ ++.|+.|+..++++||.++.| +-+.+.++-+.+-.
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7899999988876 699999999999999999988 44556666665544
No 51
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=73.88 E-value=2.8 Score=39.53 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=37.5
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
+-...++||+|++..+...-+|+-||++|. .++.+++++... ++..++..+
T Consensus 315 di~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~~~ 366 (391)
T 1xti_A 315 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE--NDAKILNDV 366 (391)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSH--HHHHHHHHH
T ss_pred CcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEccc--chHHHHHHH
Confidence 334578999999999999999999999885 567777776653 344444443
No 52
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=72.93 E-value=3.1 Score=35.72 Aligned_cols=42 Identities=12% Similarity=-0.093 Sum_probs=31.4
Q ss_pred hhhCCCEEEEEcCC------chhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 11 RSLKPTSVIFYNAD------VAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 11 ~~~~p~~VI~Yep~------~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
+-...++||.||+. .+...-+|+-||++|. ..+.++.++..+
T Consensus 99 d~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 147 (175)
T 2rb4_A 99 DVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD 147 (175)
T ss_dssp CCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG
T ss_pred CcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc
Confidence 34467899999988 8888889999999884 578888777654
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=72.64 E-value=4.3 Score=35.58 Aligned_cols=43 Identities=9% Similarity=-0.150 Sum_probs=35.2
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
++-...++||+||+..+...-+|+-||++|. .++.+++++...
T Consensus 110 ldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 110 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 153 (185)
T ss_dssp -CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh
Confidence 4556789999999998888899999999885 478888887754
No 54
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=70.97 E-value=4.7 Score=40.69 Aligned_cols=49 Identities=24% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCCcCHHHHHHHHh---cCCCHHHHHcC-CHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLN---RGSSLPALCKL-SEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~---~~~sl~~l~~~-s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
..|||+.+-+.+|-. .+.++.+|.++ +.+.|.+.+|. ..|..+|+..+.
T Consensus 245 ~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~-~~g~~l~~~a~G 297 (434)
T 2aq4_A 245 DLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGS-KLGMKIHLALQG 297 (434)
T ss_dssp GSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCS-SHHHHHHHHTTT
T ss_pred cccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhCH-HHHHHHHHHhcC
Confidence 346799999999988 57999999999 99999999996 579999998875
No 55
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=70.95 E-value=3.3 Score=35.03 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=41.6
Q ss_pred CcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 355 RVTSKNKAAVLNR-GSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 355 ~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
||++..+.+|.+. |.|+.+|..++.++|.++-| ++.+|.+|...-+.
T Consensus 32 GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 6999999999985 99999999999999999988 67888888776654
No 56
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.00 E-value=3.3 Score=38.01 Aligned_cols=44 Identities=14% Similarity=-0.033 Sum_probs=35.2
Q ss_pred HHhhhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEe
Q psy11328 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQY 50 (410)
Q Consensus 7 ~~~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y 50 (410)
+.=++-...++||+|++..+...-+|+.||++|. .++.+++++.
T Consensus 277 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 277 SRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 3334555679999999999998999999999884 5677777776
No 57
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=68.86 E-value=5.6 Score=35.56 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=33.3
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
+-...++||.|++..+.-.-+|+.||++|. .++.+++++...
T Consensus 96 di~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~ 138 (212)
T 3eaq_A 96 DIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 138 (212)
T ss_dssp SCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG
T ss_pred CCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh
Confidence 445689999999998888899999999886 478888777653
No 58
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.64 E-value=4.6 Score=38.26 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=36.4
Q ss_pred hhhhCCCEEEEEcCC------chhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNAD------VAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 10 L~~~~p~~VI~Yep~------~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
++-...++||.|++. .+...-+|+.||++|. ..+.+++++... ++..++..+
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~~i 388 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK--HSMNILNRI 388 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH--HHHHHHHHH
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh--hhHHHHHHH
Confidence 344567899999987 5677889999999884 457777776442 445555544
No 59
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=68.13 E-value=2 Score=34.74 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=7.8
Q ss_pred cCHHHHHHHHhcC
Q psy11328 356 VTSKNKAAVLNRG 368 (410)
Q Consensus 356 v~~~n~~~ll~~~ 368 (410)
|+++-|.+|++.+
T Consensus 48 IG~~~A~~Il~~r 60 (98)
T 2edu_A 48 IGPKKAQLIVGWR 60 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666543
No 60
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.64 E-value=6.8 Score=36.23 Aligned_cols=46 Identities=13% Similarity=-0.017 Sum_probs=37.4
Q ss_pred HHhhhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 7 ~~~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
+.=++-...++||+|++..+...-+|+.||++|. .++.+++++...
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 345 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 345 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH
Confidence 3445556789999999998888999999999885 478888887664
No 61
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=66.99 E-value=7.1 Score=38.06 Aligned_cols=49 Identities=12% Similarity=-0.007 Sum_probs=42.5
Q ss_pred CCCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
..|||+.+.+..|-. .+.|+.||.+++.+.|.+.+|. ..|..||+..+.
T Consensus 182 ~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G 231 (356)
T 4dez_A 182 ALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFGP-STGLWLLLLAKG 231 (356)
T ss_dssp GSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHCH-HHHHHHHHHHTT
T ss_pred HHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhCC-hHHHHHHHHHcC
Confidence 356799999888865 6899999999999999999995 579999998765
No 62
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.72 E-value=8.2 Score=39.56 Aligned_cols=52 Identities=6% Similarity=0.036 Sum_probs=39.5
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCC-ceEEEEEEeCCcHHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQYGESVEEQAYLSDLR 64 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~-~~~Vy~L~y~~S~EE~~yl~si~ 64 (410)
++-...++||.|++-.+...-+|+-||++|.. .+.+++++.. +|..|+..+.
T Consensus 355 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~---~e~~~~~~l~ 407 (579)
T 3sqw_A 355 MDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK---DELPFVRELE 407 (579)
T ss_dssp CCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG---GGHHHHHHHH
T ss_pred CCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc---cHHHHHHHHH
Confidence 34456899999999999999999999998854 6788777765 3555555443
No 63
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.15 E-value=5.6 Score=37.23 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=37.1
Q ss_pred hhhCCCEEEEEcCCc------hhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHHH
Q psy11328 11 RSLKPTSVIFYNADV------AAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDLR 64 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~------s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si~ 64 (410)
+-...++||.|++.. +...-+|+.||++|. ..+.+++++..+ ++..++..++
T Consensus 308 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~~i~ 366 (395)
T 3pey_A 308 DIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK--NSFNILSAIQ 366 (395)
T ss_dssp CCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH--HHHHHHHHHH
T ss_pred CcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech--HHHHHHHHHH
Confidence 344678999999886 778889999999885 457787777654 3444444443
No 64
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=64.20 E-value=6.6 Score=37.91 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=39.6
Q ss_pred hhhhC-CCEEEEEcCC--chhhhhhhhhhcccCC-----CceEEEEEEeCCcHHHHHHHHHHHHHHH
Q psy11328 10 LRSLK-PTSVIFYNAD--VAAIRQVEVYQCAQSE-----VKVKVFFMQYGESVEEQAYLSDLRREKK 68 (410)
Q Consensus 10 L~~~~-p~~VI~Yep~--~s~IR~IE~y~~~~~~-----~~~~Vy~L~y~~S~EE~~yl~si~rEk~ 68 (410)
++-.. .++||.|++. .+...-+|+-||++|. ..+.+++++ ++..++..+.+.-.
T Consensus 315 iDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 315 VDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-----EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-----CCHHHHHHHHHHHH
T ss_pred CccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-----ccHHHHHHHHHHhc
Confidence 34455 7999999999 8999999999999984 368888877 34555555544333
No 65
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=61.88 E-value=4 Score=35.84 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=22.3
Q ss_pred CCCCcCHHHHHHHHhc--CCCHHHHHcC
Q psy11328 352 PRPRVTSKNKAAVLNR--GSSLPALCKL 377 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~--~~sl~~l~~~ 377 (410)
-+|||+++.|.+|+.| |+|++||.+.
T Consensus 67 ~LpGiGp~~A~~II~~GpF~svedL~~V 94 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESVEDVLNI 94 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSGGGGGGC
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHHHhC
Confidence 4678999999999997 9998888764
No 66
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=61.65 E-value=7.8 Score=40.94 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=38.3
Q ss_pred CCCCcCHHHHHHHHhc-CCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhc
Q psy11328 352 PRPRVTSKNKAAVLNR-GSSLPALCKLSEQELCSL--VENTTLGNALYKALH 400 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~-~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~ 400 (410)
-.|||+...|+.|.++ ++|+.+|++++.++|..+ +|. +..+.+..++.
T Consensus 650 qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~-~i~~~~~~~~~ 700 (720)
T 2zj8_A 650 QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGV-KTVEAIFKFLG 700 (720)
T ss_dssp TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCH-HHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHH-HHHHHHHHhcc
Confidence 4567999999999996 999999999999999998 432 45555555554
No 67
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.27 E-value=7.4 Score=37.08 Aligned_cols=46 Identities=9% Similarity=-0.141 Sum_probs=36.1
Q ss_pred HHhhhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 7 SSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 7 ~~~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
+.=++-...++||.|++..+...-+|+.||++|. ..+.+++++...
T Consensus 337 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (417)
T 2i4i_A 337 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 383 (417)
T ss_dssp HTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG
T ss_pred hcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc
Confidence 3344556778999999999999999999999885 568888877654
No 68
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.64 E-value=7.3 Score=36.95 Aligned_cols=41 Identities=7% Similarity=-0.189 Sum_probs=33.7
Q ss_pred hhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 12 SLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 12 ~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
-...++||+|++..+...-+|+.||++|. .++.+++++..+
T Consensus 324 ip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~ 365 (400)
T 1s2m_A 324 IQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 365 (400)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc
Confidence 34568999999999999999999999885 578888777654
No 69
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.69 E-value=12 Score=35.23 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=40.9
Q ss_pred CCCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
-+||+++..+.+|-+ .+.|+++++.++..+|.++.| +.+.|.++......
T Consensus 7 ~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 7 DLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp TSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 456799999999987 699999999999999999988 55666666655443
No 70
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.38 E-value=12 Score=36.56 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCCCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 351 NPRPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 351 ~~~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
.-+|||++..+.+|-+ .|.|++++..++..+|.++.| +...|.++.+.....
T Consensus 38 ~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~ 91 (349)
T 1pzn_A 38 EDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 91 (349)
T ss_dssp SCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhh
Confidence 3457899999999998 599999999999999999998 556676666555443
No 71
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=58.19 E-value=4.1 Score=39.60 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=22.3
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..||++++||+++.+.
T Consensus 208 VpGIG~KTA~kLL~~~gsle~i~~~ 232 (290)
T 1exn_A 208 VEGIGAKRGYNIIREFGNVLDIIDQ 232 (290)
T ss_dssp CTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCcCCHhHHHHHHHHcCCHHHHHHH
Confidence 5779999999999999999998654
No 72
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=57.88 E-value=10 Score=36.29 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=32.6
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
++-...++||.|++.-+.-.-+|+.||++|. .++.+++++...
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~ 135 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 135 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH
Confidence 3455789999999988888889999999886 478888888664
No 73
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=57.75 E-value=17 Score=38.66 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=39.5
Q ss_pred hhhCCCEEEEEcCC-----chhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHHHH
Q psy11328 11 RSLKPTSVIFYNAD-----VAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRRE 66 (410)
Q Consensus 11 ~~~~p~~VI~Yep~-----~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~rE 66 (410)
+-...++||.||++ .+.---+|+-||++|..++++++++...+......+....+.
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~~~~ 570 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINETKRR 570 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 33456799999974 234456899999999889999998887765555444444433
No 74
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=57.55 E-value=8.6 Score=34.16 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCHHHHHcCCHHHHHHh---hC-CchhHHHHHHHhcc
Q psy11328 360 NKAAVLNRGSSLPALCKLSEQELCSL---VE-NTTLGNALYKALHT 401 (410)
Q Consensus 360 n~~~ll~~~~sl~~l~~~s~eeL~~~---~g-~~~~a~~ly~fl~~ 401 (410)
-..+++++|.|+++|++++++||.++ +| -..+|+.|.++.+.
T Consensus 52 ~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~ 97 (161)
T 4e9f_A 52 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDE 97 (161)
T ss_dssp HHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCC
Confidence 36678889999999999999999988 56 24689998887543
No 75
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=57.32 E-value=8.6 Score=37.39 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhccC
Q psy11328 353 RPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402 (410)
Q Consensus 353 ~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~~ 402 (410)
.|||+++.+..|-. .+.|+.+|.+++.+.|.+.+|. ..|..+|+..+..
T Consensus 183 l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G~ 232 (352)
T 1jx4_A 183 VPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGE-AKAKYLISLARDE 232 (352)
T ss_dssp STTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCH-HHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcCh-hHHHHHHHHhCCC
Confidence 46799998888765 5889999999999999999995 3499999988764
No 76
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.06 E-value=15 Score=37.11 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=38.3
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
++-...++||.|++..+...-+|+-||++|. ..+.+++++..+ |..++..+
T Consensus 406 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~---e~~~~~~l 457 (563)
T 3i5x_A 406 MDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD---ELPFVREL 457 (563)
T ss_dssp CCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG---GHHHHHHH
T ss_pred CCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh---HHHHHHHH
Confidence 3445689999999999998999999999885 467777777653 44444443
No 77
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=56.60 E-value=11 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.3
Q ss_pred CCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 353 RPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 353 ~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
+|||+++.+..|-. .+.++.+|.+++.+.|.+.+|. ..|..||++.+.
T Consensus 320 l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~-~~g~~L~~~a~G 368 (504)
T 3gqc_A 320 LPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGP-KTGQMLYRFCRG 368 (504)
T ss_dssp STTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCH-HHHHHHHHHTTT
T ss_pred hhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhCh-hHHHHHHHHhcC
Confidence 45699998888776 5889999999999999999995 579999987654
No 78
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=61.26 E-value=2.3 Score=36.45 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=38.8
Q ss_pred hhhhhCCCEEEEEcCCchhhhhhhhhhcccCCC-ceEEEEEEeCCcHHHHHHHHHHH
Q psy11328 9 KLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQYGESVEEQAYLSDLR 64 (410)
Q Consensus 9 ~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~-~~~Vy~L~y~~S~EE~~yl~si~ 64 (410)
=++-...++||+|++..+...-+|+-|+++|.. .+.+++++... +..++..+.
T Consensus 93 Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~---~~~~~~~~~ 146 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH---DHLLLGKVG 146 (170)
Confidence 345557899999999988888999999998854 67777777554 444444443
No 79
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=56.28 E-value=8.8 Score=37.36 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=22.6
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|++.+.+.
T Consensus 240 v~GiG~KtA~kLl~~~gsle~i~~~ 264 (336)
T 1rxw_A 240 VKGVGVKKALNYIKTYGDIFRALKA 264 (336)
T ss_dssp CTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 5679999999999999999998765
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=55.86 E-value=9.2 Score=42.45 Aligned_cols=49 Identities=0% Similarity=-0.056 Sum_probs=40.1
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccCC---CceEEEEEEeCCcHHHHHH
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSE---VKVKVFFMQYGESVEEQAY 59 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~---~~~~Vy~L~y~~S~EE~~y 59 (410)
+-...++||+|||.-+...-+|+.||++|. ..+.||.++.+++.||..+
T Consensus 571 Dl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~ 622 (968)
T 3dmq_A 571 NFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLV 622 (968)
T ss_dssp CCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHH
T ss_pred CcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHH
Confidence 344689999999999999999999998774 3567899999999887643
No 81
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=55.62 E-value=8.4 Score=37.51 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=41.1
Q ss_pred CCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhccC
Q psy11328 353 RPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402 (410)
Q Consensus 353 ~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~~ 402 (410)
.|||+++.+..|-. .+.|+.+|.+++.++|.+.+|. ..|..+|+..+..
T Consensus 184 l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G~ 233 (354)
T 3bq0_A 184 IPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGK-AKALYLLKLAQNK 233 (354)
T ss_dssp STTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCH-HHHHHHHHHHTTC
T ss_pred ccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCH-HHHHHHHHHhCCC
Confidence 56799988877654 5889999999999999999995 3499999998763
No 82
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=55.47 E-value=5.8 Score=39.15 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|++.+.+.
T Consensus 237 ipGiG~KtA~kll~~~gsle~i~~~ 261 (341)
T 3q8k_A 237 IRGIGPKRAVDLIQKHKSIEEIVRR 261 (341)
T ss_dssp CTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCccHHHHHHHHHHcCCHHHHHHH
Confidence 5889999999999999999998763
No 83
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.09 E-value=8 Score=36.69 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=30.9
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
++-...++||.|++..+...-+|+.||++|. .++.++.++..+
T Consensus 344 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 387 (414)
T 3eiq_A 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 387 (414)
T ss_dssp CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECST
T ss_pred CCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH
Confidence 3445688999999998888899999999885 468888887765
No 84
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=54.73 E-value=9.1 Score=37.51 Aligned_cols=25 Identities=0% Similarity=0.062 Sum_probs=18.1
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|++.++..
T Consensus 239 v~GIG~KtA~kLi~~~gsle~i~~~ 263 (346)
T 2izo_A 239 IRGIGPERALKIIKKYGKIEKAMEY 263 (346)
T ss_dssp STTCCHHHHHHHHHHSSCC------
T ss_pred CCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 6789999999999999999998876
No 85
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=54.56 E-value=8.8 Score=38.82 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCcCHHHHHHHHh--cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhccC
Q psy11328 353 RPRVTSKNKAAVLN--RGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402 (410)
Q Consensus 353 ~~~v~~~n~~~ll~--~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~~ 402 (410)
.|||+.+-...+|+ .+.++.+|.+++.+.|.+.+|. ..|..||+..+.-
T Consensus 258 l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG~-~~g~~L~~~a~G~ 308 (435)
T 4ecq_A 258 IRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGE-KNGSWLYAMCRGI 308 (435)
T ss_dssp STTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHCH-HHHHHHHHHTTTC
T ss_pred hcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhCc-cHHHHHHHHhhCC
Confidence 45699888777766 4789999999999999999994 6899999887653
No 86
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.81 E-value=34 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 372 PALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 372 ~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
.+|+.++.+||..|-| .|-+||.-|..
T Consensus 62 aqLl~Ltk~eL~~vCg---EG~RlysqL~v 88 (99)
T 2e8m_A 62 AQLFSLNKDELRTVCP---EGARVYSQITV 88 (99)
T ss_dssp HHHHHCCHHHHHHHCT---THHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHCC---chHHHHHHHHH
Confidence 6799999999999998 59999998764
No 87
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=53.14 E-value=18 Score=35.63 Aligned_cols=42 Identities=12% Similarity=-0.109 Sum_probs=34.8
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYG 51 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~ 51 (410)
|+-...++||.||+-.+...-+||-||++|. ..+.++.++..
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 4556789999999988888899999999985 57888877763
No 88
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=52.81 E-value=29 Score=28.91 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred HHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 372 PALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 372 ~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
.+|+.++.+||..|-| +.|.+||.-|..
T Consensus 52 aqLf~Ltk~eL~~vCg--~EG~RlysqL~~ 79 (99)
T 1wwu_A 52 PQLFSLNKEELKKVCG--EEGVRVYSQLTM 79 (99)
T ss_dssp HHHHTCCHHHHHHHHT--TTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHCc--chhHHHHHHHHH
Confidence 7899999999999998 579999998764
No 89
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=52.38 E-value=7.9 Score=38.15 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=41.8
Q ss_pred CCCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
..|||+++.+..|-. .+.|+.||.+++.+.|.+.+|. ..|..||+..+.
T Consensus 183 ~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G 232 (362)
T 4f4y_A 183 EIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGK-AKALYLLKLAQD 232 (362)
T ss_dssp TSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHCH-HHHHHHHHHHTT
T ss_pred hccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhCh-HHHHHHHHHhcC
Confidence 356799988888776 5899999999999999999995 589999998765
No 90
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=51.85 E-value=23 Score=36.21 Aligned_cols=43 Identities=5% Similarity=-0.032 Sum_probs=33.7
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCC-ceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~-~~~Vy~L~y~~ 52 (410)
++....++||.|++..+.-.-+|+-||++|.. ++.+++++..+
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 45567899999999988889999999998854 66666655443
No 91
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=51.77 E-value=11 Score=36.67 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=23.0
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|+++++..
T Consensus 242 v~GiG~ktA~kli~~~gsle~il~~ 266 (340)
T 1b43_A 242 IKGIGLKKALEIVRHSKDPLAKFQK 266 (340)
T ss_dssp STTCCHHHHHHHHHTCSSGGGGTGG
T ss_pred CCCccHHHHHHHHHHcCCHHHHHcC
Confidence 6789999999999999999998776
No 92
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=51.76 E-value=14 Score=44.01 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=47.3
Q ss_pred CCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhccC
Q psy11328 351 NPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402 (410)
Q Consensus 351 ~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~~ 402 (410)
.-.|||+.+.++++-++.-|+++|.+++.+||..++++...|+.++++++.=
T Consensus 729 ~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~ 780 (1724)
T 4f92_B 729 RQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLF 780 (1724)
T ss_dssp GGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTS
T ss_pred ecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHC
Confidence 3357899999999999988999999999999999999888999999999873
No 93
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=50.62 E-value=19 Score=38.25 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred hhCCCEEEEEcCC-----chhhhhhhhhhcccCCCceEEEEEEeCCcHHHHHHHHHHH
Q psy11328 12 SLKPTSVIFYNAD-----VAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLR 64 (410)
Q Consensus 12 ~~~p~~VI~Yep~-----~s~IR~IE~y~~~~~~~~~~Vy~L~y~~S~EE~~yl~si~ 64 (410)
-...++||.||++ .+.-.-+|+-||++|..++++++++...+....+.+....
T Consensus 505 ip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 505 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHHHH
Confidence 3456799999984 2444568999999998889998887776554444444333
No 94
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=50.13 E-value=12 Score=35.79 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=34.3
Q ss_pred hhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 11 RSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
+-...++||.|++..+...-+|+.||++|. .++.+++++...
T Consensus 341 di~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (410)
T 2j0s_A 341 DVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 383 (410)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG
T ss_pred CcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH
Confidence 444678999999998888899999999884 578888887764
No 95
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=49.40 E-value=23 Score=34.83 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhh-hcCCCCCCCCCCCCCcCHHHHHHHHh-cCCCHH
Q psy11328 295 ISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLF-RIKPAPGRESNPRPRVTSKNKAAVLN-RGSSLP 372 (410)
Q Consensus 295 l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~n~~~ll~-~~~sl~ 372 (410)
+.+||||+..-+..+...--.| ...-+.++..... ...++ .| ||||+|.|+.+.+ .+.||.
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG-----~~~~le~l~~~~p-~l~ll~~v-----------~GiG~k~a~~l~~~Gi~tle 121 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESG-----HLRKLDHISESVP-VLELFSNI-----------WGAGTKTAQMWYQQGFRSLE 121 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSS-----SCGGGGGCCTTHH-HHHHHHTS-----------TTCCHHHHHHHHHTTCCSHH
T ss_pred HhcCCCccHHHHHHHHHHHHcC-----CchHHHHHhhhhH-HHHHHhcC-----------CCcCHHHHHHHHHcCCCCHH
Confidence 7899999986555544421122 1122333311111 22222 44 6799999999987 588999
Q ss_pred HHHcC
Q psy11328 373 ALCKL 377 (410)
Q Consensus 373 ~l~~~ 377 (410)
+|-++
T Consensus 122 dL~~a 126 (335)
T 2bcq_A 122 DIRSQ 126 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 96
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=48.98 E-value=11 Score=37.52 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|++.++..
T Consensus 237 IpGIG~KtA~kLl~~~gsle~i~~~ 261 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQKHKSIEEIVRR 261 (379)
T ss_dssp CTTCCHHHHHHHHHHSSSHHHHHTT
T ss_pred CCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 5889999999999999999998876
No 97
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=47.66 E-value=9.8 Score=37.82 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=44.8
Q ss_pred hhhhhhhhhhhhcCCCCCC-----CCCCCCCcCHHHHHHHHh-----cCCCHHHHHc----CCHHHHHHhhC-CchhHHH
Q psy11328 330 FRASSFFLLLFRIKPAPGR-----ESNPRPRVTSKNKAAVLN-----RGSSLPALCK----LSEQELCSLVE-NTTLGNA 394 (410)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~n~~~ll~-----~~~sl~~l~~----~s~eeL~~~~g-~~~~a~~ 394 (410)
+|+..+-++...|+.+|.. +..-+|||+++-|..+.+ ++..+++|-+ ....+|.+|-| ..+.|++
T Consensus 38 ~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~ 117 (360)
T 2ihm_A 38 GRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANR 117 (360)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHH
Confidence 5666666777666666654 355678899998888765 4444555433 23467777755 3478888
Q ss_pred HHHH
Q psy11328 395 LYKA 398 (410)
Q Consensus 395 ly~f 398 (410)
+|+-
T Consensus 118 l~~~ 121 (360)
T 2ihm_A 118 WYQE 121 (360)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8763
No 98
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=46.40 E-value=7.8 Score=38.63 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=22.2
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHHcC
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALCKL 377 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~~~ 377 (410)
.||||+|.|..|+++++|++.+.+.
T Consensus 256 VpGIG~KtA~kLl~~~gsle~il~~ 280 (363)
T 3ory_A 256 FEGIGPKKALQLVKAYGGIEKIPKP 280 (363)
T ss_dssp STTCCHHHHHHHHHHHTSSTTSCGG
T ss_pred CCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 4679999999999999999988764
No 99
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=46.19 E-value=15 Score=43.55 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccCC
Q psy11328 351 NPRPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTRP 403 (410)
Q Consensus 351 ~~~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~~ 403 (410)
.-.|||+...|+.+.+ .+.|+.+|++++.+++..+++ +...+..+.+|++.=+
T Consensus 1560 ~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P 1614 (1724)
T 4f92_B 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 1614 (1724)
T ss_dssp GGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCC
Confidence 3457799999999987 589999999999999999998 5678899999998643
No 100
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=46.04 E-value=13 Score=37.20 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhcCCCCCC-----CCCCCCCcCHHHHHHHHh-----cCCCHHHHHc----CCHHHHHHhhC-CchhHHH
Q psy11328 330 FRASSFFLLLFRIKPAPGR-----ESNPRPRVTSKNKAAVLN-----RGSSLPALCK----LSEQELCSLVE-NTTLGNA 394 (410)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~n~~~ll~-----~~~sl~~l~~----~s~eeL~~~~g-~~~~a~~ 394 (410)
+|+..+-+|...|+.+|.. +..-+||||++-|..|-+ ++..+++|-+ ....+|.+|.| ..+.|++
T Consensus 57 ~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ 136 (381)
T 1jms_A 57 GSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEK 136 (381)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHH
Confidence 5677777777777777765 356789999998888765 3444445443 23456777755 3478888
Q ss_pred HHHH
Q psy11328 395 LYKA 398 (410)
Q Consensus 395 ly~f 398 (410)
+|+-
T Consensus 137 ly~~ 140 (381)
T 1jms_A 137 WFRM 140 (381)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8863
No 101
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=42.77 E-value=13 Score=34.68 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=28.9
Q ss_pred hhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHh-----cCCCHHHHHc
Q psy11328 335 FFLLLFRIKPAPGRESNPRPRVTSKNKAAVLN-----RGSSLPALCK 376 (410)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~-----~~~sl~~l~~ 376 (410)
|||..--| .|.-.++..+||||++.|.+++. .|+|+.+|.+
T Consensus 120 f~n~a~pI-TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~ 165 (205)
T 2i5h_A 120 FFNKADSI-TTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ 165 (205)
T ss_dssp HHC--CCB-CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred hccccCCc-cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45544444 44445677889999999999997 4888888755
No 102
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=42.10 E-value=8.4 Score=31.70 Aligned_cols=32 Identities=3% Similarity=-0.132 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCcCHHHHHHHHhc--CCCHHHHHc
Q psy11328 345 APGRESNPRPRVTSKNKAAVLNR--GSSLPALCK 376 (410)
Q Consensus 345 ~~~~~~~~~~~v~~~n~~~ll~~--~~sl~~l~~ 376 (410)
+.-.++..+|||+++-|.+|+.+ |+|+.+|.+
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~ 56 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN 56 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG
T ss_pred CCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 33345556788999999999985 777776654
No 103
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=40.22 E-value=31 Score=34.57 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=39.8
Q ss_pred CCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhc
Q psy11328 354 PRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALH 400 (410)
Q Consensus 354 ~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~ 400 (410)
-||++..+.+|.+ .+.|++++..++..+|.++.| +...|.++.+...
T Consensus 89 ~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 89 NGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp TTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3599999999988 489999999999999999999 5667777766554
No 104
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=38.86 E-value=6.4 Score=38.94 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HHhhhhhCCCEEEEEcCC------chhhhhhhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHH
Q psy11328 7 SSKLRSLKPTSVIFYNAD------VAAIRQVEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDL 63 (410)
Q Consensus 7 ~~~L~~~~p~~VI~Yep~------~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si 63 (410)
..=|+-...++||.||+- .++.--+||-||++|. ..+.+++++... ++..|+..+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~--~~~~~~~~i 455 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK--HSMNILNRI 455 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc--chHHHHHHH
Confidence 334566688999999987 4567788999999884 468888777653 334455444
No 105
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=37.89 E-value=11 Score=37.11 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=44.8
Q ss_pred hhhhhhhhhhhhhcCCCCCCC-----CCCCCCcCHHHHHHHHh-----cCCCHHHHHc----CCHHHHHHhhC-CchhHH
Q psy11328 329 LFRASSFFLLLFRIKPAPGRE-----SNPRPRVTSKNKAAVLN-----RGSSLPALCK----LSEQELCSLVE-NTTLGN 393 (410)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~n~~~ll~-----~~~sl~~l~~----~s~eeL~~~~g-~~~~a~ 393 (410)
-+|+..+-++...|+.+|... ..-+|||+++-|..+.+ ++.-+++|-+ .+..+|.+|-| ..+.|+
T Consensus 33 ~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~ 112 (335)
T 2fmp_A 33 IHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 (335)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHH
Confidence 366677777777777666653 34578899888887765 3444455543 34566777755 246788
Q ss_pred HHHHH
Q psy11328 394 ALYKA 398 (410)
Q Consensus 394 ~ly~f 398 (410)
++|+-
T Consensus 113 ~l~~~ 117 (335)
T 2fmp_A 113 KFVDE 117 (335)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77763
No 106
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=37.60 E-value=22 Score=34.34 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=20.5
Q ss_pred CCCcCHHHHHHHHhcCCCHHHHH
Q psy11328 353 RPRVTSKNKAAVLNRGSSLPALC 375 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~~sl~~l~ 375 (410)
.||||+|.|..|+++ +|++.++
T Consensus 230 vpGiG~ktA~kli~~-gsle~i~ 251 (326)
T 1a76_A 230 VKGIGFKRAYELVRS-GVAKDVL 251 (326)
T ss_dssp TTTCCHHHHHHHHHH-TCHHHHH
T ss_pred CCCcCHHHHHHHHHc-CCHHHHH
Confidence 677999999999999 9999987
No 107
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=35.52 E-value=31 Score=31.57 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=31.0
Q ss_pred HHHHHhcCCCHHHHHcCCHHHHHHhh---CC-chhHHHHHHHhc
Q psy11328 361 KAAVLNRGSSLPALCKLSEQELCSLV---EN-TTLGNALYKALH 400 (410)
Q Consensus 361 ~~~ll~~~~sl~~l~~~s~eeL~~~~---g~-~~~a~~ly~fl~ 400 (410)
..+|..+|.|.++|++++.+||.+++ |- ..+|+.|.++..
T Consensus 57 ~~~l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~ 100 (221)
T 1kea_A 57 YDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELAR 100 (221)
T ss_dssp HHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44567789999999999999998774 52 357888877654
No 108
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=34.36 E-value=34 Score=30.46 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=34.8
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC----CchhHHHHHHHhcc
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVE----NTTLGNALYKALHT 401 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g----~~~~a~~ly~fl~~ 401 (410)
+++.-...+ .+..||.+|.++|.+|+..+|. +++.-++|..+++.
T Consensus 95 l~~esiq~i-~~~~TLe~LLemsd~evr~~L~~~ga~eEEcrRL~~Al~n 143 (149)
T 2lpe_A 95 VRPEVVQEI-PQELTLDALLEMDEAKAKEMLRRWGASTEECSRLQQALTC 143 (149)
T ss_dssp CCHHHHTTS-CTTCSHHHHTTSCHHHHHHHHHTTTCCTHHHHHHHHHHTT
T ss_pred cCHHHHHHh-hhhccHHHHHhcCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677777777 8899999999999999999873 34455666666653
No 109
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=34.04 E-value=29 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
-+=++||.+|.+++...+|. .|..||.-|.
T Consensus 43 mdGk~Lc~Ls~edF~~~~p~--~GdiL~~hL~ 72 (89)
T 1ji7_A 43 MNGKALLLLTKEDFRYRSPH--SGDELYELLQ 72 (89)
T ss_dssp SCHHHHTTCCHHHHHHHCTT--THHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHhHcCC--chHHHHHHHH
Confidence 34579999999999999986 4999998775
No 110
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=33.26 E-value=9 Score=35.99 Aligned_cols=45 Identities=11% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HhhhhhCCCEEEEEcCCchhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 8 SKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 8 ~~L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
.=++-...++||+|++..+...-+|+-||++|. .++.+++++..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 366 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 366 (394)
T ss_dssp ----------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchh
Confidence 335556789999999998888899999999885 578888777654
No 111
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=33.00 E-value=1.1e+02 Score=28.40 Aligned_cols=32 Identities=3% Similarity=-0.073 Sum_probs=24.8
Q ss_pred CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhc
Q psy11328 368 GSSLPALCKLSEQELCSLVE-NTTLGNALYKALH 400 (410)
Q Consensus 368 ~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~ 400 (410)
|.|.++|++++.++|..+ | +..+|+.|.++-.
T Consensus 95 fPtpe~la~~~~e~Lr~~-Gl~~~Ka~~l~~~A~ 127 (232)
T 4b21_A 95 FPTPKQIMETDVETLHEC-GFSKLKSQEIHIVAE 127 (232)
T ss_dssp CCCHHHHHTSCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHcCCHHHHHHc-CCcHHHHHHHHHHHH
Confidence 779999999999999764 4 4456888776543
No 112
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=32.66 E-value=81 Score=30.80 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=42.5
Q ss_pred HHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHh-cCCCHHH
Q psy11328 295 ISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLN-RGSSLPA 373 (410)
Q Consensus 295 l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~-~~~sl~~ 373 (410)
+.+||||+..-+..+...--.| ...-+.++ +.......+..+...| |||+|.|+.+.+ .+.||.+
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG-----~~~~le~l-~~~~~~~~l~~l~~V~--------GiGpk~a~~l~~~Gi~tled 124 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATG-----KLRKLEKI-RQDDTSSSINFLTRVS--------GIGPSAARKFVDEGIKTLED 124 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHS-----SCHHHHHH-HHCHHHHHHHHHTTST--------TCCHHHHHHHHHTTCCSHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHhC-----CcHHHHHH-HcccchhHHHHHhCCC--------CCCHHHHHHHHHcCCCCHHH
Confidence 7899999976555444422122 11223333 2222234444444445 599999999987 5899999
Q ss_pred HHcC
Q psy11328 374 LCKL 377 (410)
Q Consensus 374 l~~~ 377 (410)
|.++
T Consensus 125 L~~a 128 (335)
T 2fmp_A 125 LRKN 128 (335)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9986
No 113
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=31.99 E-value=30 Score=26.99 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=28.9
Q ss_pred cCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhcc
Q psy11328 367 RGSSLPALCKLSEQELCSL--VENTTLGNALYKALHT 401 (410)
Q Consensus 367 ~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~ 401 (410)
.+.++.+|++.|++||.++ +|. +..+.|.+.|..
T Consensus 28 gI~Tv~dL~~~s~~dLlki~n~G~-kSl~EI~~~L~~ 63 (73)
T 1z3e_B 28 GINTVQELANKTEEDMMKVRNLGR-KSLEEVKAKLEE 63 (73)
T ss_dssp TCCBHHHHHTSCHHHHHTSTTCCH-HHHHHHHHHHHH
T ss_pred CCCcHHHHHcCCHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence 6899999999999999999 664 677888888764
No 114
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=31.63 E-value=33 Score=36.47 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCcCHHHHHHHHhc--CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhccC
Q psy11328 354 PRVTSKNKAAVLNR--GSSLPALCKLSEQELCSLVE-NTTLGNALYKALHTR 402 (410)
Q Consensus 354 ~~v~~~n~~~ll~~--~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~~ 402 (410)
.|++++....|+++ ++++.+|..++.++|..+-| .++.|+.|++.++..
T Consensus 452 ~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~s 503 (586)
T 4glx_A 452 DGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKA 503 (586)
T ss_dssp TTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHH
Confidence 57999999999986 69999999999999999844 357899999888754
No 115
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=31.56 E-value=58 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=29.6
Q ss_pred cCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccC
Q psy11328 367 RGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTR 402 (410)
Q Consensus 367 ~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~ 402 (410)
.+.++.+|++.|++||.++ +|. +-.+.|.+.|...
T Consensus 31 gI~Tv~dL~~~se~dLlki~n~G~-KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 31 AIHYIGDLVQRTEVELLXTPNLGX-XSLTEIXDVLASR 67 (86)
T ss_dssp TCCBHHHHHHSCHHHHHTSTTCCH-HHHHHHHHHHHTT
T ss_pred CCCcHHHHHhCCHHHHhhccccCc-ccHHHHHHHHHHc
Confidence 5899999999999999999 654 6788888887653
No 116
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.53 E-value=25 Score=28.88 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
-+=++||.+|.|++....+. ..|..||..|+.
T Consensus 56 m~G~~LC~ls~edF~~~~~~-~~GdiL~~hL~~ 87 (98)
T 1x66_A 56 MDGKELCKMNKEDFLRATTL-YNTEVLLSHLSY 87 (98)
T ss_dssp CCHHHHHHCCHHHHHTTSCH-HHHHHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHHHcCC-CchHHHHHHHHH
Confidence 46689999999999988865 679999987764
No 117
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=30.12 E-value=18 Score=36.59 Aligned_cols=43 Identities=5% Similarity=-0.128 Sum_probs=27.1
Q ss_pred hhhhCCCEEEEEcCC------chhhhhhhhhhcccCC-CceEEEEEEeCC
Q psy11328 10 LRSLKPTSVIFYNAD------VAAIRQVEVYQCAQSE-VKVKVFFMQYGE 52 (410)
Q Consensus 10 L~~~~p~~VI~Yep~------~s~IR~IE~y~~~~~~-~~~~Vy~L~y~~ 52 (410)
++-...++||+|++. .+...-+|+.||++|. .++.+++++...
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 455578999999987 6677788999999885 478888887643
No 118
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=29.54 E-value=15 Score=40.09 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=37.4
Q ss_pred hhhCCCEEEEEcCCchhhhh-hhhhhcccCC-CceEEEEEEeCCcHHHHHHHHHHHH
Q psy11328 11 RSLKPTSVIFYNADVAAIRQ-VEVYQCAQSE-VKVKVFFMQYGESVEEQAYLSDLRR 65 (410)
Q Consensus 11 ~~~~p~~VI~Yep~~s~IR~-IE~y~~~~~~-~~~~Vy~L~y~~S~EE~~yl~si~r 65 (410)
+-...++||.|++.-..+-+ .|+.||++|. .++.+++++...+.+....+..++.
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~l~~ 710 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTL 710 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHHHHh
Confidence 44578999999997533444 4899999884 5788887776555555555554443
No 119
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=29.34 E-value=39 Score=27.03 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
-+=++||.+|.|++....+. .|..||.-|.
T Consensus 41 m~G~~LC~ls~edF~~~~p~--~GdiL~~hL~ 70 (85)
T 1sv0_A 41 MNGKRLCLLTRADFGHRCPG--AGDVLHNVLQ 70 (85)
T ss_dssp SCHHHHTTCCHHHHHHHSTT--THHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHHHcCC--chHHHHHHHH
Confidence 34589999999999999873 7999998775
No 120
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=29.21 E-value=47 Score=30.56 Aligned_cols=40 Identities=8% Similarity=0.010 Sum_probs=31.0
Q ss_pred HHHHHhcCCCHHHHHcCCHHHHHHh---hC-CchhHHHHHHHhc
Q psy11328 361 KAAVLNRGSSLPALCKLSEQELCSL---VE-NTTLGNALYKALH 400 (410)
Q Consensus 361 ~~~ll~~~~sl~~l~~~s~eeL~~~---~g-~~~~a~~ly~fl~ 400 (410)
..+|...|.|.++|++++.++|.++ +| ...+|+.|.++..
T Consensus 55 ~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 98 (226)
T 1orn_A 55 TKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCA 98 (226)
T ss_dssp HHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456778999999999999999886 55 2357888877653
No 121
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=29.12 E-value=61 Score=29.60 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=30.8
Q ss_pred HHHHhcCCCHHHHHcCCHHHHHHh---hCCchhHHHHHHHhc
Q psy11328 362 AAVLNRGSSLPALCKLSEQELCSL---VENTTLGNALYKALH 400 (410)
Q Consensus 362 ~~ll~~~~sl~~l~~~s~eeL~~~---~g~~~~a~~ly~fl~ 400 (410)
.+|..+|.|.++|+++++++|.++ +|-..+|+.|.++..
T Consensus 53 ~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~ 94 (225)
T 1kg2_A 53 ERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQ 94 (225)
T ss_dssp HHHHHHCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 467788999999999999999985 552257888877643
No 122
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.11 E-value=38 Score=27.68 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.6
Q ss_pred HHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 372 PALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 372 ~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
++||++|.||+....+. .|..||.-|+
T Consensus 60 ~~LC~mskedF~~~~p~--~GdiL~~hL~ 86 (92)
T 2e8p_A 60 ATLCNCALEELRLVFGP--LGDQLHAQLR 86 (92)
T ss_dssp HHHHHSCHHHHHHHSGG--GHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHcCC--cHHHHHHHHH
Confidence 79999999999999864 7999998775
No 123
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=27.94 E-value=28 Score=34.19 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=47.0
Q ss_pred hhhhhhhhhhhhcCCCCCCC-----CCCCCCcCHHHHHHHHhc--CCCHHHHHcC-----CHHHHHHhhC-CchhHHHHH
Q psy11328 330 FRASSFFLLLFRIKPAPGRE-----SNPRPRVTSKNKAAVLNR--GSSLPALCKL-----SEQELCSLVE-NTTLGNALY 396 (410)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~n~~~ll~~--~~sl~~l~~~-----s~eeL~~~~g-~~~~a~~ly 396 (410)
+|+..+-++...|+.+|-.. ..-+||||++-|..+.+- -|+++.|-++ ..+.|.+|-| ..+.|+++|
T Consensus 34 ~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 34 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 88888889999999888774 346899999999888651 3333333333 2233457755 347888888
Q ss_pred HH
Q psy11328 397 KA 398 (410)
Q Consensus 397 ~f 398 (410)
+-
T Consensus 114 ~~ 115 (335)
T 2bcq_A 114 QQ 115 (335)
T ss_dssp HT
T ss_pred Hc
Confidence 63
No 124
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=27.49 E-value=25 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
-+=++||.+|.|++....+. ..|..||..|.
T Consensus 59 m~G~~LC~lt~edF~~~~p~-~~GdiL~~hL~ 89 (97)
T 1sxe_A 59 IDGKELCKMTKDDFQRLTPS-YNADILLSHLH 89 (97)
T ss_dssp CCHHHHTTCCHHHHTTTSCH-HHHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHHcCC-CchHHHHHHHH
Confidence 56689999999999998875 67999998775
No 125
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.21 E-value=47 Score=35.88 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=41.9
Q ss_pred CCCCCCcCHHHHHHHHhc--CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 350 SNPRPRVTSKNKAAVLNR--GSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 350 ~~~~~~v~~~n~~~ll~~--~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
.=-.||+++|.+..|.++ ++++.+|..++.++|..+-| .++.|+.|.+.+..
T Consensus 448 aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~ 502 (671)
T 2owo_A 448 AMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEK 502 (671)
T ss_dssp TTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHHHH
Confidence 334578999999999997 58999999999999998843 24678888877654
No 126
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=26.72 E-value=29 Score=31.44 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHhcCCCHHHHHcCCHHHHHHh---hC-CchhHHHHHHHhc
Q psy11328 363 AVLNRGSSLPALCKLSEQELCSL---VE-NTTLGNALYKALH 400 (410)
Q Consensus 363 ~ll~~~~sl~~l~~~s~eeL~~~---~g-~~~~a~~ly~fl~ 400 (410)
+|...|.|.++|++++.++|.++ +| ...+|+.|.++..
T Consensus 53 ~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 94 (211)
T 2abk_A 53 KLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCR 94 (211)
T ss_dssp HHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45567899999999999999886 45 2357888877653
No 127
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=26.69 E-value=41 Score=36.33 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=40.8
Q ss_pred CCCCcCHHHHHHHHhc--CCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhcc
Q psy11328 352 PRPRVTSKNKAAVLNR--GSSLPALCKLSEQELCSL--VENTTLGNALYKALHT 401 (410)
Q Consensus 352 ~~~~v~~~n~~~ll~~--~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~ 401 (410)
-.+|+|+|.+..|.++ +.++.+|..+..++|..+ +|. +.|+.|.+.+..
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~-Ksa~nLl~aIe~ 497 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGE-KSAQNLLRQIEE 497 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCS-TTHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccch-hhHHHHHHHHHH
Confidence 3578999999999998 469999999999999988 554 678888877654
No 128
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.38 E-value=17 Score=34.68 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCcCHHHHHHHHh-cCCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhcc
Q psy11328 353 RPRVTSKNKAAVLN-RGSSLPALCKLSEQELCSLVE-NTTLGNALYKALHT 401 (410)
Q Consensus 353 ~~~v~~~n~~~ll~-~~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~~ 401 (410)
+|||++..+.+|-+ .+.|++++..++..+|.++.| +...+.++.+....
T Consensus 17 l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 17 LPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp ---------------------------------------------------
T ss_pred cCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 45799999988876 699999999999999999988 55566666655443
No 129
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=25.45 E-value=28 Score=36.44 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.5
Q ss_pred CCcCHHHHHHHHhc-CCCHHHHHcC-CHHHHHHhhC-CchhHHHH
Q psy11328 354 PRVTSKNKAAVLNR-GSSLPALCKL-SEQELCSLVE-NTTLGNAL 395 (410)
Q Consensus 354 ~~v~~~n~~~ll~~-~~sl~~l~~~-s~eeL~~~~g-~~~~a~~l 395 (410)
||||+|.|++|++. +.|+.+|.++ ....|.++=| .++-|++|
T Consensus 103 ~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 103 RGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 56999999999986 8999999986 3335555533 12445555
No 130
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.25 E-value=36 Score=29.44 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=25.8
Q ss_pred CHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 370 SLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 370 sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
+=++||.+|.|++....+. ..|..||..|.
T Consensus 71 nGk~LC~LskeDF~~~~p~-~~GDiL~~hL~ 100 (128)
T 2ytu_A 71 DGKELCKMNKEDFLRATTL-YNTEVLLSHLS 100 (128)
T ss_dssp CTTHHHHCCHHHHHHHSCH-HHHHHHHHHHH
T ss_pred CHHHHHcCCHHHHHHHcCC-CchHHHHHHHH
Confidence 5689999999999999875 67999998775
No 131
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=24.30 E-value=1.4e+02 Score=27.50 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=30.5
Q ss_pred cCHHHHHHHHhc---------CCCHHHHHcCCHHHHHHhhC-CchhHHHHHHHhc
Q psy11328 356 VTSKNKAAVLNR---------GSSLPALCKLSEQELCSLVE-NTTLGNALYKALH 400 (410)
Q Consensus 356 v~~~n~~~ll~~---------~~sl~~l~~~s~eeL~~~~g-~~~~a~~ly~fl~ 400 (410)
++.+++..++++ |.|.++|++++.++|.. +| +..+|+.|.++-.
T Consensus 63 ~s~~~a~~~~~rL~~~Gg~~~fPtp~~la~~~~e~Lr~-~G~~~rKa~~i~~~A~ 116 (228)
T 3s6i_A 63 LHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRA-CGFSARKIDSLKSIAE 116 (228)
T ss_dssp SCHHHHHHHHHHHHTSSGGGSCCCHHHHHHSCHHHHHH-HTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHH
Confidence 555555544443 47999999999999965 44 4456888876543
No 132
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=24.19 E-value=76 Score=31.27 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=22.9
Q ss_pred CCCcCHHHHHHHHhcC--CCHHHHHcCCH
Q psy11328 353 RPRVTSKNKAAVLNRG--SSLPALCKLSE 379 (410)
Q Consensus 353 ~~~v~~~n~~~ll~~~--~sl~~l~~~s~ 379 (410)
.||||+|.|.+|++++ +|+..+...-.
T Consensus 230 v~GiG~ktA~kli~~~~~~~l~~il~~~~ 258 (352)
T 3qe9_Y 230 LRGIGLAKACKVLRLANNPDIVKVIKKIG 258 (352)
T ss_dssp CTTCCHHHHHHHHHHCCCSCHHHHHTTHH
T ss_pred CCCeeHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6779999999999999 68988876533
No 133
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=23.97 E-value=56 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
-+=++||.+|.+++....+ ..|..||.-|+
T Consensus 44 m~G~~Lc~ls~edF~~~~p--~~GdiL~~hL~ 73 (82)
T 1sv0_C 44 MNGKALCLMSLDMYLCRVP--VGGKMLYRDFR 73 (82)
T ss_dssp SCHHHHHHCCHHHHHHHCT--TTHHHHHHHHH
T ss_pred CCHHHHHhCCHHHHHhhCC--CchHHHHHHHH
Confidence 4668999999999999876 46888888775
No 134
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=23.59 E-value=80 Score=30.46 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHhcCCCHHHHHcCCHHHHHHh---hCCchhHHHHHHHhc
Q psy11328 361 KAAVLNRGSSLPALCKLSEQELCSL---VENTTLGNALYKALH 400 (410)
Q Consensus 361 ~~~ll~~~~sl~~l~~~s~eeL~~~---~g~~~~a~~ly~fl~ 400 (410)
+.+|..+|.|.++|++++.++|.++ +|-..+|+.|.++..
T Consensus 71 ~~rL~~~fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~A~ 113 (287)
T 3n5n_X 71 YTGWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGAR 113 (287)
T ss_dssp HHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4467788999999999999999987 453247888887643
No 135
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=23.24 E-value=41 Score=27.78 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=29.5
Q ss_pred cCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhccC
Q psy11328 367 RGSSLPALCKLSEQELCSL--VENTTLGNALYKALHTR 402 (410)
Q Consensus 367 ~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~~ 402 (410)
.+.++.+|++.|+++|.++ +|. +..+.|.+.|...
T Consensus 43 gI~Tv~dL~~~se~dLlki~n~G~-KSl~EI~~~L~~~ 79 (98)
T 1coo_A 43 AIHYIGDLVQRTEVELLKTPNLGK-KSLTEIKDVLASR 79 (98)
T ss_dssp TCCBHHHHHTSCHHHHTTSTTCCH-HHHHHHHHHHHHT
T ss_pred CCCcHHHHHhCCHHHHHhcCCCCH-HHHHHHHHHHHHc
Confidence 6899999999999999999 664 6788888887653
No 136
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=23.18 E-value=31 Score=27.45 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=28.0
Q ss_pred cCCCHHHHHcCCHHHHHHh--hCCchhHHHHHHHhcc
Q psy11328 367 RGSSLPALCKLSEQELCSL--VENTTLGNALYKALHT 401 (410)
Q Consensus 367 ~~~sl~~l~~~s~eeL~~~--~g~~~~a~~ly~fl~~ 401 (410)
.+.++.+|++.|+++|.++ +|. +..+.|.+.|..
T Consensus 35 gI~Tv~dL~~~se~dLlki~n~G~-kSl~EI~~~L~e 70 (79)
T 3gfk_B 35 GINTVQELANKTEEDMMKVRNLGR-KSLEEVKAKLEE 70 (79)
T ss_dssp TCCBHHHHTTCCHHHHTTSTTCHH-HHHHHHHHHHHH
T ss_pred CCCCHHHHHhCCHHHHHHcCCCCH-hHHHHHHHHHHH
Confidence 5899999999999999999 554 567777777754
No 137
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=22.83 E-value=1.2e+02 Score=30.13 Aligned_cols=67 Identities=7% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHcCCCCchhhhhhhhhhhhccCCCCCCCCchhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHh-cCCCHHH
Q psy11328 295 ISKLPGMAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLN-RGSSLPA 373 (410)
Q Consensus 295 l~~lPgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~-~~~sl~~ 373 (410)
+.+||||+..-+..+..+--+| ...-+.++. .......+..+-.. ||||+|.|+.+.+ .+.||.+
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG-----~~~~le~l~-~d~~~~~l~~l~~I--------~GvGpk~a~~ly~~Gi~tled 147 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDG-----ESSEAKAVL-NDERYKSFKLFTSV--------FGVGLKTAEKWFRMGFRTLSK 147 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHS-----SCHHHHHHH-HCHHHHHHHHHHTS--------TTCCHHHHHHHHHTTCCSHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcC-----CcHHHHHHh-cCcchhHHHHHHcc--------CCCCHHHHHHHHHcCCCcHHH
Confidence 6799999875554443321122 112233332 22332222222223 5699999999987 5899999
Q ss_pred HH
Q psy11328 374 LC 375 (410)
Q Consensus 374 l~ 375 (410)
|.
T Consensus 148 L~ 149 (381)
T 1jms_A 148 IQ 149 (381)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 138
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=22.09 E-value=79 Score=28.84 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=30.2
Q ss_pred HHHHHhc-CCC------HHHHHcCCHHHHHHh---hC-CchhHHHHHHHhc
Q psy11328 361 KAAVLNR-GSS------LPALCKLSEQELCSL---VE-NTTLGNALYKALH 400 (410)
Q Consensus 361 ~~~ll~~-~~s------l~~l~~~s~eeL~~~---~g-~~~~a~~ly~fl~ 400 (410)
..+|.++ |.+ .++|++++.++|+++ +| ...+|+.|.++..
T Consensus 52 ~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~ 102 (218)
T 1pu6_A 52 LENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 102 (218)
T ss_dssp HHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 4456667 888 999999999999876 45 2347888776653
No 139
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=21.96 E-value=63 Score=26.14 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 369 SSLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 369 ~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
-+=++||.+|.+++...++. .|..||.-|+
T Consensus 43 mdGk~Lc~Lt~edF~~~~p~--~GdiL~~hL~ 72 (93)
T 2qar_B 43 MNGKALLLLTKEDFRYRSPH--SGDVLYELLQ 72 (93)
T ss_dssp SCHHHHTTCCHHHHHHHCTT--THHHHHHHHH
T ss_pred CCHHHHHcCCHHHHhhhCCc--chHHHHHHHH
Confidence 34579999999999998875 5888998775
No 140
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=21.77 E-value=50 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=23.7
Q ss_pred CHHHHHcCCHHHHHHhhCCchhHHHHHHHhc
Q psy11328 370 SLPALCKLSEQELCSLVENTTLGNALYKALH 400 (410)
Q Consensus 370 sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~ 400 (410)
+=++||.+|.|++....++ |..||.-|+
T Consensus 55 ~G~~LC~ls~edF~~~~p~---GdiL~~hL~ 82 (91)
T 1sxd_A 55 SGRELCSLNQEDFFQRVPR---GEILWSHLE 82 (91)
T ss_dssp CHHHHHHSCHHHHHHHCTT---CHHHHHHHH
T ss_pred CHHHHHcCCHHHHHHHCCC---chHHHHHHH
Confidence 4579999999999999863 899998775
No 141
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.30 E-value=54 Score=26.72 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.6
Q ss_pred cCC-CHHHHHcCCHHHHHHhhCCchhHHHHHHHhcc
Q psy11328 367 RGS-SLPALCKLSEQELCSLVENTTLGNALYKALHT 401 (410)
Q Consensus 367 ~~~-sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~ 401 (410)
+|. +=++||.+|.|++....+ ..|..||..|+.
T Consensus 52 ~f~m~G~~LC~lskedF~~~~p--~~GdiL~~hL~~ 85 (96)
T 2dkx_A 52 FQELAGKELCAMSEEQFRQRSP--LGGDVLHAHLDI 85 (96)
T ss_dssp HSSCCHHHHHHSCHHHHHHHCS--SSTHHHHHHHHH
T ss_pred cCCCCHHHHHhCCHHHHHHHcC--cchHHHHHHHHH
Confidence 443 778999999999999875 369999988753
No 142
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=21.19 E-value=70 Score=24.69 Aligned_cols=39 Identities=10% Similarity=-0.045 Sum_probs=32.0
Q ss_pred CCcEEEEeCCCCCCcchhHHHhCCcEEEEeecccccEEE
Q psy11328 96 SCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134 (410)
Q Consensus 96 ~~~~IIVD~RE~rS~lp~~L~~~Gv~v~~~~L~VGDYil 134 (410)
..+.|++|.......+|.++...|.++....-.-|.|.+
T Consensus 38 ~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~~i 76 (82)
T 3lvj_C 38 ETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPYRY 76 (82)
T ss_dssp CEEEEEECCTTHHHHHHHHHHHTTCEEEEEECSSSSEEE
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEEE
Confidence 458999999998888999999999999887655555654
No 143
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=20.88 E-value=34 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=33.2
Q ss_pred CCcEEEEeCCCCCCcchhHHHhCCcEEEEeecccccEEE
Q psy11328 96 SCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134 (410)
Q Consensus 96 ~~~~IIVD~RE~rS~lp~~L~~~Gv~v~~~~L~VGDYil 134 (410)
..+.|++|.......+|.++...|.++......-|.|.+
T Consensus 30 ~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~~~i 68 (87)
T 3hz7_A 30 GVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIEV 68 (87)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGCEEE
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEEE
Confidence 468999999988888999999999999888766777765
No 144
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=20.69 E-value=48 Score=34.60 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=31.9
Q ss_pred hhhhCCCEEEEEcCCchhhhhhhhhhcccCCC-ceEEEEEEe
Q psy11328 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEV-KVKVFFMQY 50 (410)
Q Consensus 10 L~~~~p~~VI~Yep~~s~IR~IE~y~~~~~~~-~~~Vy~L~y 50 (410)
++....++||.|++.-+.---+|+-||++|.. ++.+++++.
T Consensus 331 ID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp CCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred CCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEC
Confidence 34556789999999988888899999998854 566666543
No 145
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=20.57 E-value=82 Score=31.73 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=38.4
Q ss_pred hhhhhhhcCCCCCCCCCCCCCcCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhC--------CchhHHHHHHHhcc
Q psy11328 335 FFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVE--------NTTLGNALYKALHT 401 (410)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g--------~~~~a~~ly~fl~~ 401 (410)
.|++|..+ |||+++.+++|+++|+|.+++.++.. ++....| ....+++..+++..
T Consensus 24 ~wL~L~~~-----------~gvG~~~~~~Ll~~fgs~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (382)
T 3maj_A 24 DWMRLIRA-----------ENVGPRTFRSLINHFGSARAALERLP-ELARRGGAARAGRIPSEDEARREIEAGRR 86 (382)
T ss_dssp HHHHHHTS-----------TTCCHHHHHHHHHHHSSHHHHHHHHH-HHHHHHTCSSCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHcC-----------CCCCHHHHHHHHHHcCCHHHHHHcCH-HHHHhhhHHHHhcCCCHHHHHHHHHHHHh
Confidence 47777777 56999999999999999999998744 3443333 12345555555543
No 146
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=20.24 E-value=43 Score=32.06 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=29.3
Q ss_pred cCHHHHHHHHhcCCCHHHHHcCCHHHHHHhhCCchhHHHHHHHhccC
Q psy11328 356 VTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402 (410)
Q Consensus 356 v~~~n~~~ll~~~~sl~~l~~~s~eeL~~~~g~~~~a~~ly~fl~~~ 402 (410)
||+.-+.+|+.+.|||..|++++-..++ ++|. ++| ++..|.+.
T Consensus 136 vG~~vaArLIs~AGgL~~LAk~PAstIq-iLGA-eKa--lfr~lkt~ 178 (255)
T 3icx_A 136 VGPALGARLLSIAGSLDELAKMPASTIQ-VLGA-EKA--LFRALRSG 178 (255)
T ss_dssp HCHHHHHHHHHHHSSHHHHTTSCHHHHT-TCC---------------
T ss_pred hccHHHHHHHHHcCCHHHHhhCChHHHH-Hhhh-hhH--HHHHhccC
Confidence 8999999999999999999999999976 8886 333 56666543
Done!