Your job contains 1 sequence.
>psy11328
MFAQDLSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYL
SDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGL
YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHN
KPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFP
KLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPG
MAEWSRARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKN
KAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTRPEVSSGSL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11328
(410 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6DFB2 - symbol:ercc4 "Ercc4-prov protein" spec... 359 5.4e-56 3
ASPGD|ASPL0000070525 - symbol:AN8713 species:162425 "Emer... 403 3.4e-55 2
UNIPROTKB|F1NAV2 - symbol:ERCC4 "Uncharacterized protein"... 350 9.2e-54 3
ZFIN|ZDB-GENE-030131-5533 - symbol:ercc4 "excision repair... 356 1.8e-52 3
UNIPROTKB|Q7RW07 - symbol:NCU07440 "Putative uncharacteri... 297 5.3e-43 2
FB|FBgn0002707 - symbol:mei-9 "meiotic 9" species:7227 "D... 387 6.7e-43 3
DICTYBASE|DDB_G0284419 - symbol:xpf "DNA excision repair ... 277 7.7e-40 3
UNIPROTKB|F1RLR4 - symbol:ERCC4 "Uncharacterized protein"... 383 8.0e-40 2
UNIPROTKB|Q9QYM7 - symbol:ERCC4 "DNA repair endonuclease ... 386 2.6e-39 2
UNIPROTKB|Q92889 - symbol:ERCC4 "DNA repair endonuclease ... 382 5.5e-39 2
UNIPROTKB|E1BKV9 - symbol:ERCC4 "Uncharacterized protein"... 372 4.1e-38 2
MGI|MGI:1354163 - symbol:Ercc4 "excision repair cross-com... 383 1.3e-37 2
RGD|1560340 - symbol:Ercc4 "excision repair cross-complem... 383 1.6e-37 2
RGD|1586469 - symbol:LOC688631 "similar to DNA repair end... 377 1.6e-37 2
RGD|1304845 - symbol:Ercc4l1 "excision repair cross-compl... 374 1.2e-36 2
UNIPROTKB|E2QYD6 - symbol:ERCC4 "Uncharacterized protein"... 365 1.3e-36 2
WB|WBGene00008140 - symbol:C47D12.8 species:6239 "Caenorh... 245 5.6e-33 3
UNIPROTKB|G5EBZ1 - symbol:C47D12.8 "Protein C47D12.8" spe... 245 5.6e-33 3
SGD|S000005943 - symbol:RAD1 "Single-stranded DNA endonuc... 339 5.0e-31 2
TAIR|locus:2163011 - symbol:UVH1 "AT5G41150" species:3702... 331 9.4e-29 1
POMBASE|SPCC970.01 - symbol:rad16 "DNA repair endonucleas... 310 1.4e-26 1
GENEDB_PFALCIPARUM|MAL13P1.346 - symbol:MAL13P1.346 "DNA ... 224 1.7e-16 3
UNIPROTKB|H0YJN7 - symbol:FANCM "Fanconi anemia group M p... 102 8.9e-05 1
>UNIPROTKB|Q6DFB2 [details] [associations]
symbol:ercc4 "Ercc4-prov protein" species:8355 "Xenopus
laevis" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=ISS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=ISS] [GO:0047485 "protein N-terminus
binding" evidence=ISS] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] [GO:0043566 "structure-specific DNA binding"
evidence=ISS] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0009411
GO:GO:0003684 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0008022 GO:GO:0004519 GO:GO:0000784
GO:GO:0047485 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0032205
GO:GO:0006295 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
TIGRFAMs:TIGR00596 KO:K10848 CTD:2072 HOVERGEN:HBG051500
EMBL:BC076828 RefSeq:NP_001086576.1 UniGene:Xl.5314
ProteinModelPortal:Q6DFB2 SMR:Q6DFB2 GeneID:446411 KEGG:xla:446411
Xenbase:XB-GENE-986818 Uniprot:Q6DFB2
Length = 897
Score = 359 (131.4 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 67/97 (69%), Positives = 81/97 (83%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+IVDMREFRSELP L+H+RG+ IEPVT+ VGDYIL+PDICVERKS+SDLIGSL +GRLYT
Sbjct: 665 IIVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICVERKSVSDLIGSLNNGRLYT 724
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIA 196
Q MCR+Y KP+LLIEFD NKPF L + ++I+
Sbjct: 725 QCVSMCRYYKKPILLIEFDPNKPFSLVSRNSIHQEIS 761
Score = 225 (84.3 bits), Expect = 9.3e-36, Sum P(3) = 9.3e-36
Identities = 46/105 (43%), Positives = 70/105 (66%)
Query: 200 LIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFE 259
LIEFD NKPF L + ++I+ +DIT+K+ LLTLHFP+LR++W P++TA+LF E
Sbjct: 739 LIEFDPNKPFSLVSRNSIHQEISV--NDITSKISLLTLHFPRLRILWCPSPHSTAELFEE 796
Query: 260 LKQGRDEPSAEVASSIGQTPNEDY---TDRYNAAIEDFISKLPGM 301
LKQ R +P + A +I T N + +++YN +D + K+PG+
Sbjct: 797 LKQNRPQPDSATAMAI--TANSESIPESEKYNPGPQDVLLKMPGV 839
Score = 201 (75.8 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+++V+ +RQ+E+Y+ A + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 548 LTRVLHEIEPRYVVLYDSEVSFVRQLEIYR-ASKQKPLRVYFLIYGGSTEEQRYLTSLRK 606
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG 88
EK+AFE LI+EK +M +P E+DG
Sbjct: 607 EKEAFEKLIREKASMVIPEERDG 629
Score = 77 (32.2 bits), Expect = 5.4e-56, Sum P(3) = 5.4e-56
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 344 PAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P P P V +KN A++N +++ L LS ++L ++ N+T L++ +HT
Sbjct: 827 PGPQDVLLKMPGVNAKNCRAIMNHVTNIAELTTLSLEKLTEILGNSTFAKQLHEFMHT 884
>ASPGD|ASPL0000070525 [details] [associations]
symbol:AN8713 species:162425 "Emericella nidulans"
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0007534 "gene conversion at mating-type
locus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0044732 "mitotic spindle pole body"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 EMBL:BN001303 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
OMA:QQSIVVD EnsemblFungi:CADANIAT00006357 Uniprot:C8VA33
Length = 985
Score = 403 (146.9 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 88/184 (47%), Positives = 114/184 (61%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV+VD+REFRS LP LLH + I P I+VGDYIL+PDICVERKS+ DLI SL++GRLY
Sbjct: 718 RVVVDVREFRSALPSLLHGNNMVIVPCQITVGDYILTPDICVERKSVRDLISSLRNGRLY 777
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q + M +HY PLLLIEFD NK F + + FL +F + + + S
Sbjct: 778 NQAETMTQHYKSPLLLIEFDENKSFTFDA-FTSATTPGTTFLTDFGFSSSGTVTTSLSSS 836
Query: 219 RDIAAKSSDITAK--LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
+ S+ +A+ L LLTL FP+L++IWSS PY TA++F ELK+ EP A IG
Sbjct: 837 SALINPSAPKSAQHLLVLLTLAFPRLKIIWSSSPYQTAEIFAELKKNAPEPDPVRAVQIG 896
Query: 277 QTPN 280
N
Sbjct: 897 LDVN 900
Score = 205 (77.2 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 44/92 (47%), Positives = 59/92 (64%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++P +I Y D A IR+VEVY+ + V+V+FM YG SVEEQ YLS +RREK A
Sbjct: 609 LEEVRPRYIIMYEPDPAFIRRVEVYRSSHVGRDVRVYFMYYGGSVEEQRYLSAVRREKDA 668
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGRVI 101
F LI+EK+NMAV D + +P+E R +
Sbjct: 669 FTKLIKEKSNMAVTLTHDKSAEDPQEQFLRTV 700
>UNIPROTKB|F1NAV2 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010834
"telomere maintenance via telomere shortening" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0004520 GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:AADN02023914
EMBL:AADN02023915 IPI:IPI00573514 Ensembl:ENSGALT00000004716
ArrayExpress:F1NAV2 Uniprot:F1NAV2
Length = 897
Score = 350 (128.3 bits), Expect = 9.2e-54, Sum P(3) = 9.2e-54
Identities = 74/135 (54%), Positives = 97/135 (71%)
Query: 73 LIQEKTNMAVPTEQDGVSTEPEESCGR-VIVDMREFRSELPVLLHKRGLYIEPVTISVGD 131
LI++ +V T+ + +++ + +IVDMREFRSELP L+H+RG+ IEPVT+ VGD
Sbjct: 643 LIRDVKPASVSTDTRKAGGQAQKTAQQTIIVDMREFRSELPSLIHRRGIDIEPVTLEVGD 702
Query: 132 YILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFEL--QGNY 189
YIL+PDICVERKSISDLIGSL +GRLYTQ M R+Y +P+LLIEFD NKPF L QG+
Sbjct: 703 YILTPDICVERKSISDLIGSLNNGRLYTQCISMSRYYKRPILLIEFDPNKPFSLIPQGSL 762
Query: 190 ---YLSRDIAAKFLI 201
S D+ +K +
Sbjct: 763 RQEISSSDVTSKLTL 777
Score = 199 (75.1 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 52/113 (46%), Positives = 68/113 (60%)
Query: 190 YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSG 249
Y R I LIEFD NKPF L L ++I+ SSD+T+KL LLTLHFPKL
Sbjct: 738 YYKRPI---LLIEFDPNKPFSLIPQGSLRQEIS--SSDVTSKLTLLTLHFPKLL-----P 787
Query: 250 PYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKLPGM 301
P+ TA+LF ELKQ R P AE A ++ + +D+YN +DF+ K+PG+
Sbjct: 788 PHATAELFEELKQNRP-PDAETAMAVTADSETLPESDKYNPGPQDFLLKMPGV 839
Score = 194 (73.4 bits), Expect = 9.2e-54, Sum P(3) = 9.2e-54
Identities = 35/83 (42%), Positives = 59/83 (71%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ LR+
Sbjct: 553 LTRVLHEVEPRYVVLYDAELTFVRQLEIYKAGRPGKPLRVYFLIYGSSTEEQRYLTALRK 612
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG 88
EK+AFE LI+E+ +M VP E++G
Sbjct: 613 EKEAFEKLIRERASMVVPEEREG 635
Score = 72 (30.4 bits), Expect = 9.2e-54, Sum P(3) = 9.2e-54
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALH 400
P V +KN A++N S+ L LS+ +LC ++ N L+ +H
Sbjct: 837 PGVNAKNCHALMNHVKSIAELVTLSKDKLCEILGNAANATQLFDFIH 883
>ZFIN|ZDB-GENE-030131-5533 [details] [associations]
symbol:ercc4 "excision repair cross-complementing
rodent repair deficiency, complementation group 4" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IBA]
[GO:0003697 "single-stranded DNA binding" evidence=IBA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IBA] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IBA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
ZFIN:ZDB-GENE-030131-5533 GO:GO:0003697 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712 GO:GO:0000014
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
HOGENOM:HOG000202204 TIGRFAMs:TIGR00596 KO:K10848 CTD:2072
HOVERGEN:HBG051500 OrthoDB:EOG4T1HKT EMBL:BC054895 IPI:IPI00480931
RefSeq:NP_956079.1 UniGene:Dr.26626 HSSP:Q8TZH8
ProteinModelPortal:Q7SYE8 STRING:Q7SYE8 GeneID:327322
KEGG:dre:327322 NextBio:20809978 Uniprot:Q7SYE8
Length = 886
Score = 356 (130.4 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 76/123 (61%), Positives = 89/123 (72%)
Query: 75 QEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYIL 134
QE + A T + G E +E R+IVDMREFRSELP LLH+RGL IEPVT+ VGDYIL
Sbjct: 631 QEPASAATNTRKAGGLEEVKEP-HRIIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYIL 689
Query: 135 SPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRD 194
+ DICVERKS+SDLIGSLQSGRLYTQ M R Y +P+LLIEFD KPF L ++
Sbjct: 690 TSDICVERKSVSDLIGSLQSGRLYTQCLSMTRFYRRPVLLIEFDPAKPFSLVARSDFRQE 749
Query: 195 IAA 197
I+A
Sbjct: 750 ISA 752
Score = 230 (86.0 bits), Expect = 3.4e-33, Sum P(3) = 3.4e-33
Identities = 50/105 (47%), Positives = 66/105 (62%)
Query: 200 LIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFE 259
LIEFD KPF L ++I+A +D+T+KL LLTLHFP+LRL+W PY TA+LF E
Sbjct: 729 LIEFDPAKPFSLVARSDFRQEISA--NDVTSKLTLLTLHFPRLRLLWCPSPYVTAELFQE 786
Query: 260 LKQGRDEPSAEVASSI---GQTPNEDYTDRYNAAIEDFISKLPGM 301
LK GR EP A A ++ +T E D YN DF+ ++PG+
Sbjct: 787 LKHGRTEPDASTAQAVTAESETVTES-ADLYNPGPYDFLLRMPGV 830
Score = 193 (73.0 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 35/83 (42%), Positives = 59/83 (71%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L + P V+ Y+A+++ +RQ+E+Y+ + ++V+F+ YG S EEQ YL+ L +
Sbjct: 537 LTRVLHEVDPMFVVLYDAELSFVRQLEIYKACRPGKPLRVYFLIYGGSTEEQRYLTALNK 596
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG 88
EK+AFE+LI+EK +M VP E++G
Sbjct: 597 EKQAFEHLIREKASMVVPEEREG 619
Score = 54 (24.1 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTRPEV 405
P V KN +++ S L L S++ L ++ +++ LY+ +H +V
Sbjct: 828 PGVNVKNVKSLIKHVSCLADLVTFSQETLSEILGSSSNARMLYEFIHNPMDV 879
>UNIPROTKB|Q7RW07 [details] [associations]
symbol:NCU07440 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISS] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=ISS] [GO:0000710 "meiotic mismatch repair"
evidence=ISS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0000736
"double-strand break repair via single-strand annealing, removal of
nonhomologous ends" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
GO:GO:0000736 HOGENOM:HOG000202204 OrthoDB:EOG447K2Q
TIGRFAMs:TIGR00596 KO:K10848 OMA:QQSIVVD EMBL:AABX02000039
RefSeq:XP_964627.2 UniGene:Ncr.20944 ProteinModelPortal:Q7RW07
STRING:Q7RW07 EnsemblFungi:EFNCRT00000007403 GeneID:3880767
KEGG:ncr:NCU07440 Uniprot:Q7RW07
Length = 957
Score = 297 (109.6 bits), Expect = 5.3e-43, Sum P(2) = 5.3e-43
Identities = 79/204 (38%), Positives = 110/204 (53%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
RV+VD+REFRS LP LLH R + I P ++VGDYILSP+ICVERKS+SDLI S + GRLY
Sbjct: 710 RVVVDVREFRSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLY 769
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
Q + M +HY P+LLIEFD NK F L+ LS + + + ++ +LQ L
Sbjct: 770 AQCETMFQHYRNPMLLIEFDQNKSFTLEPFADLSGSLRS---VNPENAGANDLQSKIVLL 826
Query: 219 RDIAAKSSDITAKLQLLTLH-FPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQ 277
K I + T F +L+ + P A + L +G + P V G
Sbjct: 827 TLAFPKLRIIWSSSPYETAEIFERLKAL-EEEPDPVAAVRAGLGEG-ESPEDGVNEGKGA 884
Query: 278 TPNEDYTDRYNAAIEDFISKLPGM 301
N T +N ++ + K+PG+
Sbjct: 885 V-NGGST--FNMEAQEMLGKVPGV 905
Score = 197 (74.4 bits), Expect = 5.3e-43, Sum P(2) = 5.3e-43
Identities = 42/94 (44%), Positives = 62/94 (65%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +KP +I Y D + IR+VEVY+ + ++ V+V+F+ YG SVEEQ YLS +RREK A
Sbjct: 599 LEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRREKDA 658
Query: 70 FEYLIQEKTNMAV--PTEQDGVSTEPEESCGRVI 101
F LI+E+ +M++ T+ GV +PE + R I
Sbjct: 659 FTKLIRERASMSIVMTTDSHGVE-DPESAFLRTI 691
>FB|FBgn0002707 [details] [associations]
symbol:mei-9 "meiotic 9" species:7227 "Drosophila
melanogaster" [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISS;NAS;IMP;TAS] [GO:0006298 "mismatch repair"
evidence=NAS;IMP] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=NAS;TAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0045132 "meiotic chromosome segregation"
evidence=IMP] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP;TAS] [GO:0043234 "protein complex"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IBA] [GO:0000110 "nucleotide-excision repair
factor 1 complex" evidence=IBA] [GO:0006296 "nucleotide-excision
repair, DNA incision, 5'-to lesion" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0007095
EMBL:AE014298 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0016321 GO:GO:0000712 GO:GO:0000014
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
TIGRFAMs:TIGR00596 GeneTree:ENSGT00390000004394 KO:K10848
OMA:QQSIVVD EMBL:U27181 EMBL:BT001319 PIR:S58936 RefSeq:NP_525068.1
UniGene:Dm.1684 ProteinModelPortal:Q24087 SMR:Q24087 IntAct:Q24087
MINT:MINT-1765400 STRING:Q24087 PaxDb:Q24087
EnsemblMetazoa:FBtr0070656 GeneID:31373 KEGG:dme:Dmel_CG3697
CTD:31373 FlyBase:FBgn0002707 InParanoid:Q24087 OrthoDB:EOG4G1JXB
PhylomeDB:Q24087 GenomeRNAi:31373 NextBio:773308 Bgee:Q24087
GermOnline:CG3697 Uniprot:Q24087
Length = 961
Score = 387 (141.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 82/155 (52%), Positives = 107/155 (69%)
Query: 40 EVKVKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQ-DGVSTEPEESCG 98
+ K K+ +Y + ++A+L K ++ E T+ + Q G + + +
Sbjct: 645 DTKSKMVIPKYQDGKTDEAFLL-----LKTYD---DEPTDENAKSRQAGGQAPQATKETP 696
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+VIVDMREFRS+LP L+HKRGL + P+TI++GDYIL+PDICVERKSISDLIGSL SGRLY
Sbjct: 697 KVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSGRLY 756
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSR 193
Q QM RHYAKP+LLIEFD NKPF LQG + LS+
Sbjct: 757 NQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQ 791
Score = 285 (105.4 bits), Expect = 6.7e-43, Sum P(3) = 6.7e-43
Identities = 60/124 (48%), Positives = 82/124 (66%)
Query: 179 HNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLH 238
+N+ ++Q +Y ++ I LIEFD NKPF LQG + LS+ + ++DI KLQLLTLH
Sbjct: 756 YNQCVQMQRHY--AKPI---LLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLH 810
Query: 239 FPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQT-PNEDYTDRYNAAIEDFISK 297
FPKLRLIWS PY TAQLF ELK G+ EP + A+++G P +N+ I DF+ +
Sbjct: 811 FPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALGSDEPTAGEQLHFNSGIYDFLLR 870
Query: 298 LPGM 301
LPG+
Sbjct: 871 LPGV 874
Score = 195 (73.7 bits), Expect = 6.7e-43, Sum P(3) = 6.7e-43
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQS---EVKVKVFFMQYGESVEEQAYLSD 62
L L L+P V+ YN +V AIRQ+EV++ + ++KV+F+ + +VEEQAYL+
Sbjct: 573 LEHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTS 632
Query: 63 LRREKKAFEYLIQEKTNMAVPTEQDGVSTE 92
LRREK AFE++I K+ M +P QDG + E
Sbjct: 633 LRREKAAFEFIIDTKSKMVIPKYQDGKTDE 662
Score = 64 (27.6 bits), Expect = 6.7e-43, Sum P(3) = 6.7e-43
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALH 400
P V ++N +L +G SL L S++EL L+++ LY LH
Sbjct: 872 PGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDILH 918
Score = 48 (22.0 bits), Expect = 7.1e-15, Sum P(3) = 7.1e-15
Identities = 27/79 (34%), Positives = 33/79 (41%)
Query: 253 TAQLFFELKQGRDEPSAEVASSI---GQTPNEDY-TDRYNAAIEDFISKLPGMAEWSRAR 308
T + F LK DEP+ E A S GQ P T + + +F S LP + R
Sbjct: 660 TDEAFLLLKTYDDEPTDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCLIH-KRG- 717
Query: 309 TLNLEVLGLNPGQGGNFLT 327
LEVL L G LT
Sbjct: 718 ---LEVLPLTITIGDYILT 733
>DICTYBASE|DDB_G0284419 [details] [associations]
symbol:xpf "DNA excision repair protein 4"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IMP] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS;IBA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISS;IBA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] InterPro:IPR006166 InterPro:IPR020819 Pfam:PF02732
SMART:SM00891 dictyBase:DDB_G0284419 GenomeReviews:CM000153_GR
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
EMBL:AAFI02000064 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110 eggNOG:COG1948
Gene3D:3.40.50.10130 GO:GO:0000710 KO:K10848 OMA:QQSIVVD
RefSeq:XP_638619.1 HSSP:Q92889 ProteinModelPortal:Q54PN5
STRING:Q54PN5 EnsemblProtists:DDB0232364 GeneID:8624590
KEGG:ddi:DDB_G0284419 Uniprot:Q54PN5
Length = 964
Score = 277 (102.6 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 53/100 (53%), Positives = 70/100 (70%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
+I+D EF+S LPV+LH G I P+ + VGD++LSP C+ERKS+SDLIGS SGRL+T
Sbjct: 740 IIIDSHEFKSSLPVVLHNNGYEIIPLRLEVGDFVLSPIHCIERKSVSDLIGSFNSGRLFT 799
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKF 199
Q++ M R Y P+LLIEFD N+PF L L +D + F
Sbjct: 800 QIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPF 839
Score = 205 (77.2 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 40/100 (40%), Positives = 64/100 (64%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++PT +I Y+ D++ RQ+EVY+ V+++FM Y +S EE Y+S L+REK +
Sbjct: 615 LDEIRPTFIIVYDPDISITRQIEVYKAENPGTPVRLYFMTYSDSSEEYQYISKLQREKSS 674
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRS 109
FE LI+EKTN+ + TEQ+G + S ++ DM+ R+
Sbjct: 675 FEKLIREKTNLIIDTEQEGKIQLVDNSKLELLDDMKSTRN 714
Score = 158 (60.7 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 37/102 (36%), Positives = 58/102 (56%)
Query: 200 LIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFE 259
LIEFD N+PF L L +D + S + +KL LT FP+LR+IWS Y T +++ +
Sbjct: 814 LIEFDPNQPFYLVAPDELQKDYLSPFS-LPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQ 872
Query: 260 LKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLPGM 301
+K G EP + + I + N+D +NA +D + +PG+
Sbjct: 873 IKDGYPEPDPSMVNVIPEV-NDDQNYNFNA--QDVLRTMPGV 911
Score = 42 (19.8 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGN 393
P V KN +++ L L KLS E S + N ++ N
Sbjct: 909 PGVNDKNINLIMDNVDDLYHLSKLSLSEF-STIMNDSVNN 947
Score = 40 (19.1 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 14 KPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFM-QYGESVEEQAYLSDLRREKK 68
K +++ + D + Q+ Y + F + +Y + Q YL +LR++K+
Sbjct: 408 KQGTILIFVKDETTVNQLSTYL----DYGGYSFLLGKYEKLCSNQQYLDELRKKKE 459
>UNIPROTKB|F1RLR4 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IEA] [GO:0009650 "UV protection" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0004520
GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:CU915697
EMBL:CU928108 Ensembl:ENSSSCT00000008636 Uniprot:F1RLR4
Length = 917
Score = 383 (139.9 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 98/305 (32%), Positives = 168/305 (55%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ A+ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRAARPGRPLRVYFLIYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIV----DMREFRSELPVLLHKRGL 120
EK+AFE LI+EK +M VP E++G T + G V D R+ + + G
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGHVSAGAPADTRKAGGQ-----EQNGT 681
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI-EFDH 179
+ + + + ++ + R+ I +L+ G Y +MC LI ++
Sbjct: 682 Q-QSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPEMCVERKSISDLIGSLNN 739
Query: 180 NKPFE--LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTL 237
+ + + + Y R + LIEFD +KPF L L ++I+ S+D+++KL LLTL
Sbjct: 740 GRLYSQCISMSRYYKRPV---LLIEFDPSKPFSLMSRGALHQEIS--STDVSSKLTLLTL 794
Query: 238 HFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFIS 296
HFP+LR++W P+ TA+LF ELKQ + +P A A ++ + +++YN +DF+
Sbjct: 795 HFPRLRILWCPSPHATAELFEELKQNKPQPDAATAMAVTADSETLPESEKYNPGPQDFLL 854
Query: 297 KLPGM 301
K+PG+
Sbjct: 855 KMPGV 859
Score = 78 (32.5 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P V +KN +++N +++ L LS+ +L L+ N LY+ LHT
Sbjct: 857 PGVNAKNCRSLMNHVTNIAELASLSQDKLAGLLGNAASARQLYEFLHT 904
>UNIPROTKB|Q9QYM7 [details] [associations]
symbol:ERCC4 "DNA repair endonuclease XPF" species:10029
"Cricetulus griseus" [GO:0000110 "nucleotide-excision repair factor
1 complex" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=ISS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=ISS] [GO:0043566 "structure-specific DNA
binding" evidence=ISS] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0009411
GO:GO:0003684 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0004519 GO:GO:0000784 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0000110 Gene3D:3.40.50.10130 TIGRFAMs:TIGR00596 EMBL:AB017635
RefSeq:NP_001230961.1 ProteinModelPortal:Q9QYM7 SMR:Q9QYM7
GeneID:100689044 CTD:2072 HOVERGEN:HBG051500 Uniprot:Q9QYM7
Length = 913
Score = 386 (140.9 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 101/304 (33%), Positives = 170/304 (55%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 563 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 622
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + + G V D + H G +P
Sbjct: 623 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTVSTDAPADTRKAGGQEHN-GT--QP 679
Query: 125 -VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI-EFDHNKP 182
+ + + ++ + R+ I +L+ G Y ++C LI + +
Sbjct: 680 SIVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPELCVERKSVSDLIGSLNSGRL 738
Query: 183 FE--LQGNYYLSRDIAAKFLIEFDHNKPFEL--QGNYYLSRDIAAKSSDITAKLQLLTLH 238
+ L + Y R + LIEFD KPF L +G+++ ++++ SSD+++KL LLTLH
Sbjct: 739 YSQCLAMSRYYRRPV---LLIEFDAGKPFSLAPRGSFF--QEMS--SSDVSSKLTLLTLH 791
Query: 239 FPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISK 297
FP+LRL+W P+ TA+LF ELKQ + +P A A +I + +D+YN +DF+ K
Sbjct: 792 FPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLPESDKYNPGPQDFVLK 851
Query: 298 LPGM 301
+PG+
Sbjct: 852 MPGI 855
Score = 70 (29.7 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR-PEVSSG 408
P + +KN +++N ++ L LS++ L S++ + LY LHT +V SG
Sbjct: 853 PGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAYADVVSG 908
>UNIPROTKB|Q92889 [details] [associations]
symbol:ERCC4 "DNA repair endonuclease XPF" species:9606
"Homo sapiens" [GO:0009650 "UV protection" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IDA;IMP;TAS]
[GO:0003684 "damaged DNA binding" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IMP] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IMP] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IDA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009411 "response to UV" evidence=IMP] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IDA] [GO:0032205 "negative
regulation of telomere maintenance" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IMP;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0000109 "nucleotide-excision repair complex"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IMP] Reactome:REACT_216 InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
GO:GO:0009411 GO:GO:0005654 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000784
GO:GO:0009650 GO:GO:0000718 GO:GO:0006283 GO:GO:0000712
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0032205
GO:GO:0006295 GO:GO:0006296 GO:GO:0000110 PDB:1Z00 PDB:2A1J
PDBsum:1Z00 PDBsum:2A1J eggNOG:COG1948 Gene3D:3.40.50.10130
GO:GO:0000710 GO:GO:0010834 HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
KO:K10848 OMA:QQSIVVD CTD:2072 HOVERGEN:HBG051500 EMBL:L77890
EMBL:AK289726 EMBL:AF491814 EMBL:U64315 IPI:IPI00219179
RefSeq:NP_005227.1 UniGene:Hs.567265 PDB:2AQ0 PDB:2KN7 PDBsum:2AQ0
PDBsum:2KN7 ProteinModelPortal:Q92889 SMR:Q92889 DIP:DIP-42006N
IntAct:Q92889 STRING:Q92889 PhosphoSite:Q92889 DMDM:229463004
PaxDb:Q92889 PRIDE:Q92889 DNASU:2072 Ensembl:ENST00000311895
GeneID:2072 KEGG:hsa:2072 UCSC:uc002dce.2 GeneCards:GC16P014014
H-InvDB:HIX0038603 H-InvDB:HIX0173284 HGNC:HGNC:3436 HPA:CAB000156
MIM:133520 MIM:278760 MIM:610965 neXtProt:NX_Q92889 Orphanet:276264
PharmGKB:PA27850 InParanoid:Q92889 EvolutionaryTrace:Q92889
GenomeRNAi:2072 NextBio:8429 ArrayExpress:Q92889 Bgee:Q92889
CleanEx:HS_ERCC4 Genevestigator:Q92889 GermOnline:ENSG00000175595
Uniprot:Q92889
Length = 916
Score = 382 (139.5 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 97/301 (32%), Positives = 166/301 (55%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + G D+ + + G +
Sbjct: 626 EKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQ-EQNGTQ-QS 683
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI-EFDHNKPF 183
+ + + ++ + R+ I +L+ G Y +MC LI ++ + +
Sbjct: 684 IVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPEMCVERKSISDLIGSLNNGRLY 742
Query: 184 E--LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPK 241
+ + Y R + LIEFD +KPF L L ++I+ S+DI++KL LLTLHFP+
Sbjct: 743 SQCISMSRYYKRPV---LLIEFDPSKPFSLTSRGALFQEIS--SNDISSKLTLLTLHFPR 797
Query: 242 LRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKLPG 300
LR++W P+ TA+LF ELKQ + +P A A +I + +++YN +DF+ K+PG
Sbjct: 798 LRILWCPSPHATAELFEELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPG 857
Query: 301 M 301
+
Sbjct: 858 V 858
Score = 71 (30.1 bits), Expect = 5.5e-39, Sum P(2) = 5.5e-39
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P V +KN ++++ ++ L LS+ EL S++ N LY +HT
Sbjct: 856 PGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 903
>UNIPROTKB|E1BKV9 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0032205 "negative regulation of telomere maintenance"
evidence=IEA] [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IEA] [GO:0009650 "UV protection" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 GO:GO:0003684 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0004520
GO:GO:0000784 GO:GO:0009650 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
Gene3D:3.40.50.10130 GO:GO:0010834 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD CTD:2072
EMBL:DAAA02057526 EMBL:DAAA02057527 IPI:IPI01003251
RefSeq:NP_001192289.1 UniGene:Bt.23646 Ensembl:ENSBTAT00000046336
GeneID:516371 KEGG:bta:516371 NextBio:20872200 Uniprot:E1BKV9
Length = 916
Score = 372 (136.0 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 92/305 (30%), Positives = 163/305 (53%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 566 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 625
Query: 66 EKKAFEYLIQEKTNMAVPTEQDG---VSTEPEESC--GRVIVDMREFRSELPVLLHKRGL 120
EK+AFE LI+EK +M +P E++G + + C D R+ + + G
Sbjct: 626 EKEAFEKLIREKASMVIPEEREGRDETNLDLVRGCVSANATTDTRKAGGQ-----EQNGT 680
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI-EFDH 179
+ + + + ++ + R+ I +L+ G Y +MC LI ++
Sbjct: 681 Q-QSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPEMCVERKSISDLIGSLNN 738
Query: 180 NKPFE--LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTL 237
+ + + + Y R + LIEFD KPF L ++I+ +D+++KL LLTL
Sbjct: 739 GRLYSQCISMSRYYKRPM---LLIEFDPTKPFSLMSRGAFHQEISG--NDVSSKLTLLTL 793
Query: 238 HFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG-QTPNEDYTDRYNAAIEDFIS 296
HFP+LR++W P+ TA+LF ELKQ + +P A A ++ + ++YN +DF+
Sbjct: 794 HFPRLRILWCPSPHATAELFEELKQNKPQPDATTAMAVSADSETLPEAEKYNPGPQDFLL 853
Query: 297 KLPGM 301
K+PG+
Sbjct: 854 KMPGI 858
Score = 73 (30.8 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P + +KN +++N ++ L L EL S++ NT LY +HT
Sbjct: 856 PGINAKNCRSLMNHVKNIAELASLPFDELASMLGNTASARQLYDFIHT 903
>MGI|MGI:1354163 [details] [associations]
symbol:Ercc4 "excision repair cross-complementing rodent
repair deficiency, complementation group 4" species:10090 "Mus
musculus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISO;IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000723 "telomere maintenance" evidence=ISO] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO;IBA] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISO] [GO:0001094 "TFIID-class transcription factor
binding" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003697 "single-stranded
DNA binding" evidence=ISO;IBA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005669 "transcription factor TFIID complex"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISO;IBA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0009411 "response to UV" evidence=ISO]
[GO:0009650 "UV protection" evidence=IMP] [GO:0010834 "telomere
maintenance via telomere shortening" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032205 "negative regulation
of telomere maintenance" evidence=ISO] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=ISO]
[GO:0047485 "protein N-terminus binding" evidence=ISO]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 MGI:MGI:1354163 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0001094 GO:GO:0000784 GO:GO:0009650 GO:GO:0000712
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0005669
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710 GO:GO:0010834
HOGENOM:HOG000202204 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD CTD:2072
HOVERGEN:HBG051500 EMBL:AF189285 EMBL:AC004155 EMBL:BC026792
IPI:IPI00137263 RefSeq:NP_056584.2 UniGene:Mm.287837
ProteinModelPortal:Q9QZD4 SMR:Q9QZD4 STRING:Q9QZD4
PhosphoSite:Q9QZD4 PaxDb:Q9QZD4 PRIDE:Q9QZD4
Ensembl:ENSMUST00000023206 GeneID:50505 KEGG:mmu:50505
UCSC:uc007yfx.2 InParanoid:Q9QZD4 OrthoDB:EOG4T1HKT NextBio:307508
Bgee:Q9QZD4 Genevestigator:Q9QZD4 GermOnline:ENSMUSG00000022545
Uniprot:Q9QZD4
Length = 917
Score = 383 (139.9 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 100/302 (33%), Positives = 163/302 (53%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + + G +D + + G
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQ-EQNGTQ-SS 684
Query: 125 VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
+ + + ++ + R+ I +L+ G Y ++C LI H+
Sbjct: 685 IVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPELCVERKSVSDLIGSLHSGRLY 743
Query: 185 LQ----GNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFP 240
Q YY R + LIEFD +KPF L ++++ SSD+++KL LLTLHFP
Sbjct: 744 SQCLAMSRYY-RRPV---LLIEFDPSKPFSLAPRGAFFQEMS--SSDVSSKLTLLTLHFP 797
Query: 241 KLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKLP 299
+LRL+W P+ TA+LF ELKQ + +P A A +I + +DRYN +DF+ K+P
Sbjct: 798 RLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLPESDRYNPGPQDFVLKMP 857
Query: 300 GM 301
G+
Sbjct: 858 GV 859
Score = 57 (25.1 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P V +KN +++N+ ++ L LS + L +++ ++ L+ LHT
Sbjct: 857 PGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHT 904
>RGD|1560340 [details] [associations]
symbol:Ercc4 "excision repair cross-complementing rodent repair
deficiency, complementation group 4" species:10116 "Rattus
norvegicus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISO;IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000723 "telomere maintenance" evidence=ISO] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO;IBA] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISO] [GO:0001094 "TFIID-class transcription factor
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IBA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=ISO;IBA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0009411 "response to UV" evidence=ISO]
[GO:0009650 "UV protection" evidence=ISO] [GO:0010834 "telomere
maintenance via telomere shortening" evidence=ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISO]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0043566 "structure-specific DNA binding"
evidence=ISO] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 RGD:1560340
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
TIGRFAMs:TIGR00596 OrthoDB:EOG4T1HKT IPI:IPI00371802
Ensembl:ENSRNOT00000004563 UCSC:RGD:1560340 NextBio:653511
ArrayExpress:D3ZT95 Uniprot:D3ZT95
Length = 917
Score = 383 (139.9 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 101/303 (33%), Positives = 164/303 (54%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ LR+
Sbjct: 567 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALRK 626
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + + G +D + + G +P
Sbjct: 627 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQ-ERNGT--QP 683
Query: 125 -VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
+ + + ++ + R+ I +L+ G Y ++C LI H+
Sbjct: 684 SIVVDMREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPELCVERKSVSDLIGSLHSGRL 742
Query: 184 ELQ----GNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
Q YY R + LIEFD +KPF L ++++ SSD+++KL LLTLHF
Sbjct: 743 YSQCLAMSRYY-RRPV---LLIEFDPSKPFSLAPRGAFVQEMS--SSDVSSKLTLLTLHF 796
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKL 298
P+LRL+W P+ TA+LF ELKQ + +P A A +I + +DRYN +DF+ K+
Sbjct: 797 PRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLPESDRYNPGPQDFVLKM 856
Query: 299 PGM 301
PG+
Sbjct: 857 PGV 859
Score = 56 (24.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P V +KN +++N+ ++ L LS + L ++ ++ L+ LHT
Sbjct: 857 PGVNAKNCRSLMNQVQNIAELATLSLERLTGILGHSGNAKQLHDFLHT 904
>RGD|1586469 [details] [associations]
symbol:LOC688631 "similar to DNA repair endonuclease XPF (DNA
excision repair protein ERCC-4)" species:10116 "Rattus norvegicus"
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IBA] [GO:0000110 "nucleotide-excision repair
factor 1 complex" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] [GO:0003697 "single-stranded DNA binding"
evidence=IBA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 Pfam:PF02732 SMART:SM00891
RGD:1586469 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
GO:GO:0000710 TIGRFAMs:TIGR00596 IPI:IPI00557668
Ensembl:ENSRNOT00000047701 OMA:LYEFIHT Uniprot:F1LWJ0
Length = 789
Score = 377 (137.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 100/303 (33%), Positives = 163/303 (53%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ L +
Sbjct: 439 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALCK 498
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + + G +D + + G +P
Sbjct: 499 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTSTDTRKAGGQ-ERNGT--QP 555
Query: 125 -VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
+ + + ++ + R+ I +L+ G Y ++C LI H+
Sbjct: 556 SIVVDMREFRSELPSLIHRRGIDIEPVTLKVGD-YILTPELCVERKSVSDLIGSLHSGRL 614
Query: 184 ELQ----GNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
Q YY R + LIEFD +KPF L ++++ SSD+++KL LLTLHF
Sbjct: 615 YSQCLAMSRYY-RRPV---LLIEFDPSKPFSLAPRGAFVQEMS--SSDVSSKLTLLTLHF 668
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE-DYTDRYNAAIEDFISKL 298
P+LRL+W P+ TA+LF ELKQ + +P A A +I + +DRYN +DF+ K+
Sbjct: 669 PRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITEDSETLPESDRYNPGPQDFVQKM 728
Query: 299 PGM 301
PG+
Sbjct: 729 PGV 731
Score = 59 (25.8 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 344 PAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P P P V +KN +++N+ ++ L LS + L ++ ++ L+ LHT
Sbjct: 719 PGPQDFVQKMPGVNAKNCRSLMNQVQNIAELATLSLERLTGILGHSGNAKQLHDFLHT 776
>RGD|1304845 [details] [associations]
symbol:Ercc4l1 "excision repair cross-complementing rodent
repair deficiency, complementation group 4-like 1" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_003750780
Ncbi:XP_003750828
Length = 876
Score = 374 (136.7 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 100/303 (33%), Positives = 163/303 (53%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F YG S EEQ YL+ L +
Sbjct: 526 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTALCK 585
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVS-TEPEESCGRVIVDMREFRSELPVLLHKRGLYIEP 124
EK+AFE LI+EK +M VP E++G T + + G +D + + G +P
Sbjct: 586 EKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQ-ERNGT--QP 642
Query: 125 -VTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPF 183
+ + + ++ + R+ I +L+ G Y ++C LI H+
Sbjct: 643 SIVVDMREFRSELPSLIHRRGIDIEPVTLKVGD-YILTPELCVERKSVSDLIGSLHSGRL 701
Query: 184 ELQ----GNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
Q YY R + LIEFD +KPF L ++++ SSD+++KL LLTLHF
Sbjct: 702 YSQCLAMSRYY-RRPV---LLIEFDPSKPFSLAPRGAFVQEMS--SSDVSSKLTLLTLHF 755
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFISKL 298
P+LRL+W P+ TA+LF ELKQ + +P A A +I + +DRYN +DF+ K+
Sbjct: 756 PRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLPESDRYNPGPQDFVLKM 815
Query: 299 PGM 301
PG+
Sbjct: 816 PGV 818
Score = 56 (24.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHT 401
P V +KN +++N+ ++ L LS + L ++ ++ L+ LHT
Sbjct: 816 PGVNAKNCRSLMNQVQNIAELATLSLERLTGILGHSGNAKQLHDFLHT 863
>UNIPROTKB|E2QYD6 [details] [associations]
symbol:ERCC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006166 InterPro:IPR006167
InterPro:IPR020819 Pfam:PF02732 SMART:SM00891 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 TIGRFAMs:TIGR00596
GeneTree:ENSGT00390000004394 OMA:QQSIVVD EMBL:AAEX03004509
EMBL:AAEX03004510 Ensembl:ENSCAFT00000029890 Uniprot:E2QYD6
Length = 918
Score = 365 (133.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 96/305 (31%), Positives = 164/305 (53%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRR 65
L+ L ++P V+ Y+A++ +RQ+E+Y+ ++ ++V+F+ YG S EEQ YL+ LR+
Sbjct: 568 LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRK 627
Query: 66 EKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRG-----L 120
EK+AFE LI+EK +M VP ++G +E G + + + P K G
Sbjct: 628 EKEAFEKLIREKASMVVPEGREG----RDE--GNLDLARGSAVAGTPTDTRKAGGQEQNR 681
Query: 121 YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLI-EFDH 179
+ + + V ++ + R+ I +L+ G Y +MC LI ++
Sbjct: 682 TQQTIVVDVREFRSELPSLIHRRGIDIEPVTLEVGD-YILTPEMCVERKSISDLIGSLNN 740
Query: 180 NKPFE--LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTL 237
+ + + + Y R + LIEFD KPF L ++I+ S+DI++KL LLTL
Sbjct: 741 GRLYGQCISMSRYYKRPV---LLIEFDPGKPFSLTSRGAFHQEIS--SNDISSKLTLLTL 795
Query: 238 HFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSI-GQTPNEDYTDRYNAAIEDFIS 296
HFP+LR++W P+ TA+LF ELKQ + +P A A ++ + +++YN +DF+
Sbjct: 796 HFPRLRILWCPSPHATAELFEELKQNKPQPDAATAMAVTADSETLPESEKYNPGPQDFLL 855
Query: 297 KLPGM 301
K+PG+
Sbjct: 856 KMPGV 860
Score = 66 (28.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR-PEV-SSGSL 410
P V +KN A+++ ++ L LS+ +L ++ N LY +HT EV S G +
Sbjct: 858 PGVNAKNCRALMHHVKNIAELASLSQDQLVGVLGNAGNAKQLYDFIHTSYAEVLSKGKM 916
>WB|WBGene00008140 [details] [associations]
symbol:C47D12.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR006166 InterPro:IPR020819
SMART:SM00891 GO:GO:0009792 GO:GO:0003697 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712 GO:GO:0000014
GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130 GO:GO:0000710
EMBL:Z69902 GeneTree:ENSGT00390000004394 KO:K10848 OMA:QQSIVVD
EMBL:AL033535 PIR:B88322 PIR:T18568 PIR:T19998 RefSeq:NP_496498.1
ProteinModelPortal:G5EBZ1 SMR:G5EBZ1 EnsemblMetazoa:C47D12.8
GeneID:174793 KEGG:cel:CELE_C47D12.8 CTD:174793 WormBase:C47D12.8
NextBio:885534 Uniprot:G5EBZ1
Length = 935
Score = 245 (91.3 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 50/95 (52%), Positives = 67/95 (70%)
Query: 92 EPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
+PEE R +IVDMREF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL
Sbjct: 678 DPEEELERPKIIVDMREFNSELPTVLYTKGYNVVATTIEIGDYILSPNIAIERKALDDLT 737
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
SLQSGR++ Q++QM HY +LLIE N+ FE
Sbjct: 738 QSLQSGRVFKQIEQMLEHYDCTVLLIE--SNRKFE 770
Score = 143 (55.4 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + KP +++ Y + +RQ+E+Y+ + V+++QY ES EE YL + RE +
Sbjct: 569 LETKKPRAIVLYTMSLQTLRQIEIYRSTNPNRSLHVYWLQYTESTEESRYLESINRETMS 628
Query: 70 FEYLIQEKTNMAVPTE 85
FE LI+E+ + + E
Sbjct: 629 FELLIREQGTLLISRE 644
Score = 84 (34.6 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLP 299
PK+R +W+ P N+A+ F ELK EP + A S+ E + + +K
Sbjct: 802 PKMRCVWTISPTNSAEFFSELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAK 861
Query: 300 GMAEWSR----ARTLNLEVLGLNPGQGGNFL 326
+W RTL ++ G+ + N L
Sbjct: 862 KGKKWKPNPTVIRTLT-QIFGIKASEAHNLL 891
>UNIPROTKB|G5EBZ1 [details] [associations]
symbol:C47D12.8 "Protein C47D12.8" species:6239
"Caenorhabditis elegans" [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IBA] [GO:0003697
"single-stranded DNA binding" evidence=IBA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IBA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IBA] InterPro:IPR006166
InterPro:IPR020819 SMART:SM00891 GO:GO:0009792 GO:GO:0003697
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724 GO:GO:0000712
GO:GO:0000014 GO:GO:0006296 GO:GO:0000110 Gene3D:3.40.50.10130
GO:GO:0000710 EMBL:Z69902 GeneTree:ENSGT00390000004394 KO:K10848
OMA:QQSIVVD EMBL:AL033535 PIR:B88322 PIR:T18568 PIR:T19998
RefSeq:NP_496498.1 ProteinModelPortal:G5EBZ1 SMR:G5EBZ1
EnsemblMetazoa:C47D12.8 GeneID:174793 KEGG:cel:CELE_C47D12.8
CTD:174793 WormBase:C47D12.8 NextBio:885534 Uniprot:G5EBZ1
Length = 935
Score = 245 (91.3 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 50/95 (52%), Positives = 67/95 (70%)
Query: 92 EPEESCGR--VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLI 149
+PEE R +IVDMREF SELP +L+ +G + TI +GDYILSP+I +ERK++ DL
Sbjct: 678 DPEEELERPKIIVDMREFNSELPTVLYTKGYNVVATTIEIGDYILSPNIAIERKALDDLT 737
Query: 150 GSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE 184
SLQSGR++ Q++QM HY +LLIE N+ FE
Sbjct: 738 QSLQSGRVFKQIEQMLEHYDCTVLLIE--SNRKFE 770
Score = 143 (55.4 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L + KP +++ Y + +RQ+E+Y+ + V+++QY ES EE YL + RE +
Sbjct: 569 LETKKPRAIVLYTMSLQTLRQIEIYRSTNPNRSLHVYWLQYTESTEESRYLESINRETMS 628
Query: 70 FEYLIQEKTNMAVPTE 85
FE LI+E+ + + E
Sbjct: 629 FELLIREQGTLLISRE 644
Score = 84 (34.6 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLP 299
PK+R +W+ P N+A+ F ELK EP + A S+ E + + +K
Sbjct: 802 PKMRCVWTISPTNSAEFFSELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAK 861
Query: 300 GMAEWSR----ARTLNLEVLGLNPGQGGNFL 326
+W RTL ++ G+ + N L
Sbjct: 862 KGKKWKPNPTVIRTLT-QIFGIKASEAHNLL 891
>SGD|S000005943 [details] [associations]
symbol:RAD1 "Single-stranded DNA endonuclease (with Rad10p)"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IDA] [GO:0006312 "mitotic
recombination" evidence=IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0000736 "double-strand break repair via
single-strand annealing, removal of nonhomologous ends"
evidence=IMP] [GO:0000735 "removal of nonhomologous ends"
evidence=IMP] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=IPI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR006166
InterPro:IPR006167 InterPro:IPR020819 SMART:SM00891 SGD:S000005943
EMBL:BK006949 GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0004519 GO:GO:0000712 EMBL:U36624
InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710 EMBL:K02070
GO:GO:0000736 HOGENOM:HOG000202204 OrthoDB:EOG447K2Q
TIGRFAMs:TIGR00596 EMBL:M15435 PIR:A26129 RefSeq:NP_015303.1
ProteinModelPortal:P06777 SMR:P06777 DIP:DIP-2424N IntAct:P06777
MINT:MINT-536819 STRING:P06777 PaxDb:P06777 PeptideAtlas:P06777
PRIDE:P06777 EnsemblFungi:YPL022W GeneID:856085 KEGG:sce:YPL022W
CYGD:YPL022w GeneTree:ENSGT00390000004394 KO:K10848 OMA:WPRFRVE
NextBio:981101 Genevestigator:P06777 GermOnline:YPL022W
Uniprot:P06777
Length = 1100
Score = 339 (124.4 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 88/225 (39%), Positives = 125/225 (55%)
Query: 52 ESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSEL 111
E+ E+ ++ +L K L K+N Q G ++ VIVD REF + L
Sbjct: 779 ETNEDLSHYKNLAERKLKLSKL--RKSNTRNAGGQQGFHNLTQDV---VIVDTREFNASL 833
Query: 112 PVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKP 171
P LL++ G+ + P ++VGDY+++PDIC+ERKSISDLIGSLQ+ RL Q ++M ++YA P
Sbjct: 834 PGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQCKKMLKYYAYP 893
Query: 172 LLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAK 231
LLIEFD + F L+ + R+ K I H P + LS+D +I K
Sbjct: 894 TLLIEFDEGQSFSLEP-FSERRNYKNKD-ISTVH--PISSK----LSQD------EIQLK 939
Query: 232 LQLLTLHFPKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIG 276
L L L FP L++IWSS P T + ELK GR++P A +G
Sbjct: 940 LAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILG 984
Score = 178 (67.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 31/72 (43%), Positives = 53/72 (73%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L+ + P+ +I + D++ IRQ+EVY+ +++ KV+FM YGES+EEQ++L+ ++REK A
Sbjct: 704 LQEMMPSYIIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDA 763
Query: 70 FEYLIQEKTNMA 81
F LI+E N++
Sbjct: 764 FTKLIRENANLS 775
Score = 42 (19.8 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 370 SLPALCKLSEQELCSLVENTTLGNALYKALHTRPE 404
S L KLS E+ L+ + L + +Y L T E
Sbjct: 1031 SFNKLQKLSWNEINELINDEDLTDRIYYFLRTEKE 1065
>TAIR|locus:2163011 [details] [associations]
symbol:UVH1 "AT5G41150" species:3702 "Arabidopsis
thaliana" [GO:0000110 "nucleotide-excision repair factor 1 complex"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IBA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IBA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006979 "response to
oxidative stress" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEP] [GO:0009314 "response to radiation"
evidence=IEP] InterPro:IPR006166 InterPro:IPR020819 Pfam:PF02732
SMART:SM00891 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006979
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0000724
GO:GO:0009314 GO:GO:0000712 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 EMBL:AB010072 GO:GO:0006296 GO:GO:0000110
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:0000710
HOGENOM:HOG000202204 KO:K10848 EMBL:AF089003 EMBL:AF160500
EMBL:AF277377 EMBL:AY140076 EMBL:AF191494 IPI:IPI00542407
IPI:IPI00546760 IPI:IPI00548326 RefSeq:NP_198931.1 UniGene:At.6598
UniGene:At.71026 ProteinModelPortal:Q9LKI5 SMR:Q9LKI5 STRING:Q9LKI5
PaxDb:Q9LKI5 PRIDE:Q9LKI5 EnsemblPlants:AT5G41150.1 GeneID:834117
KEGG:ath:AT5G41150 GeneFarm:4434 TAIR:At5g41150 InParanoid:Q9LKI5
OMA:QQSIVVD PhylomeDB:Q9LKI5 ProtClustDB:CLSN2686219
Genevestigator:Q9LKI5 GermOnline:AT5G41150 Uniprot:Q9LKI5
Length = 956
Score = 331 (121.6 bits), Expect = 9.4e-29, P = 9.4e-29
Identities = 99/311 (31%), Positives = 162/311 (52%)
Query: 13 LKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKAFEY 72
LKP+ +I Y+ D+ +R++EVY+ K+KV+F+ Y ES E Q + + +RRE +AFE
Sbjct: 615 LKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEAFES 674
Query: 73 LIQEKTNMAVPTEQDGV------STE-PEESCGRVIVDMREFRSELPVLLHKRGLYIEPV 125
LI++K++M +P +QDG+ STE P S + R EL K V
Sbjct: 675 LIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKEL----EKE----TQV 726
Query: 126 TISVGDYILS-PDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPL--LLIEFDHNKP 182
+ + +++ S P++ + +K + + +L+ G Y +C K + L F +
Sbjct: 727 IVDMREFMSSLPNV-LHQKGMKIIPVTLEVGD-YILSPSICVE-RKSIQDLFQSFTSGRL 783
Query: 183 F---ELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHF 239
F E+ YY I LIEF +K F Q + +S D+ + I +KL LL LHF
Sbjct: 784 FHQVEMMSRYYR---IPV-LLIEFSQDKSFSFQSSSDISDDVTPYN--IISKLSLLVLHF 837
Query: 240 PKLRLIWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNED-------YTDRYNAAIE 292
P+LRL+WS + TA++F LK +DEP A +G P+E+ + YN +
Sbjct: 838 PRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVG-VPSEEGIIENDIRAENYNTSAV 896
Query: 293 DFISKLPGMAE 303
+F+ +LPG+++
Sbjct: 897 EFLRRLPGVSD 907
>POMBASE|SPCC970.01 [details] [associations]
symbol:rad16 "DNA repair endonuclease XPF" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=TAS] [GO:0006311 "meiotic gene
conversion" evidence=IMP] [GO:0007533 "mating type switching"
evidence=IMP] [GO:0007534 "gene conversion at mating-type locus"
evidence=IMP] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS]
InterPro:IPR006166 InterPro:IPR006167 InterPro:IPR020819
Pfam:PF02732 SMART:SM00891 PomBase:SPCC970.01 GO:GO:0005737
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0003677
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0006311 GO:GO:0000109 GO:GO:0006296
eggNOG:COG1948 Gene3D:3.40.50.10130 GO:GO:1901255 GO:GO:0007534
EMBL:X71595 PIR:A56213 RefSeq:NP_587855.2 STRING:P36617
EnsemblFungi:SPCC970.01.1 GeneID:2538760 HOGENOM:HOG000202204
OrthoDB:EOG447K2Q NextBio:20799944 TIGRFAMs:TIGR00596
Uniprot:P36617
Length = 877
Score = 310 (114.2 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 97/295 (32%), Positives = 146/295 (49%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L +L+P VI +++D IR+VEVY+ + ++V+FM YG S+EEQ YL +RREK +
Sbjct: 542 LNNLRPRYVIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYGGSIEEQKYLFSVRREKDS 601
Query: 70 FEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMR-EFRSELPVLLHKRGLYIEPVTIS 128
F LI+E++NMA+ D E +ES V+ R +L + K V +
Sbjct: 602 FSRLIKERSNMAIVLTADSERFESQESKFLRNVNTRIAGGGQLSITNEK-----PRVIVD 656
Query: 129 VGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHN----KPFE 184
+ ++ S + + S + L G Y ++C LI+ N E
Sbjct: 657 LREFRSSLPSILHGNNFSVIPCQLLVGD-YILSPKICVERKSIRDLIQSLSNGRLYSQCE 715
Query: 185 LQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRL 244
YY +I LIEF+ ++ F LS +I +D+ +KL LLTL FP LR+
Sbjct: 716 AMTEYY---EIPV-LLIEFEQHQSFTSPPFSDLSSEIG--KNDVQSKLVLLTLSFPNLRI 769
Query: 245 IWSSGPYNTAQLFFELKQGRDEPSAEVASSIGQTPNEDYTDRYNAAIEDFISKLP 299
+WSS Y T+ +F +LK EP A+SIG +D T+ YN A D + LP
Sbjct: 770 VWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEAGQDSTNTYNQAPLDLLMGLP 824
>GENEDB_PFALCIPARUM|MAL13P1.346 [details] [associations]
symbol:MAL13P1.346 "DNA repair endonuclease"
species:5833 "Plasmodium falciparum" [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR006166 InterPro:IPR020819 SMART:SM00891
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 EMBL:AL844509 InterPro:IPR010994
SUPFAM:SSF47781 Gene3D:3.40.50.10130 KO:K10848
RefSeq:XP_001350398.1 ProteinModelPortal:Q8ID22
EnsemblProtists:MAL13P1.346:mRNA GeneID:813914 KEGG:pfa:MAL13P1.346
EuPathDB:PlasmoDB:PF3D7_1368800 HOGENOM:HOG000281780
ProtClustDB:CLSZ2500791 Uniprot:Q8ID22
Length = 1700
Score = 224 (83.9 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 60/147 (40%), Positives = 83/147 (56%)
Query: 100 VIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYT 159
VIVD+RE +S+L L+K ++I P ++ VGDYIL+ DICVERKSI DLI SL + RLY
Sbjct: 1348 VIVDIRELKSDLTYKLYKSKMHIIPYSLLVGDYILTKDICVERKSIIDLIQSLNNNRLYN 1407
Query: 160 QVQQMCRHYAKPLLLIEFDHNKPF---ELQGNYYLSRDIAAKFLIEFDHNK----PFEL- 211
Q+ QM ++Y +LLIEF++ F L Y + + I+F K PF L
Sbjct: 1408 QINQMSKYYQTYVLLIEFNNKNLFYFASLNDKYSVYTKLIM-ICIQFPKLKILWSPFSLF 1466
Query: 212 QGNYYLSRDIAAKSSDITAKLQL-LTL 237
+ S + A DI L + +TL
Sbjct: 1467 TVKLFWSLKVNASQPDIFKSLHIDMTL 1493
Score = 60 (26.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 10 LRSLKPTSVIFYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQAYLSDLRREKKA 69
L ++KP +I D+ R VE+Y CA ++F + EE+ + ++ EK
Sbjct: 994 LMTIKPYRIILTTLDLNIFRNVEIY-CA------RLFQYSIYQLHEEKYFKYIMKYEKDN 1046
Query: 70 FEYLIQEKTNM 80
F Y+ + N+
Sbjct: 1047 FIYVKNNENNI 1057
Score = 50 (22.7 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 43 VKVFFMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIV 102
V+VF + + ++ YL+ ++ EK + ++ + N+ +++ V + EE VI
Sbjct: 1173 VEVFLIFFKNNIHYNKYLNKVKVEKSNWINFLENRNNLRFELDRN-VFNKNEELFKNVIN 1231
Query: 103 DMREFR 108
+F+
Sbjct: 1232 SYLKFQ 1237
Score = 43 (20.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALH 400
P V KN ++N SL LC+ + ++L + + + LY L+
Sbjct: 1651 PGVNEKNMHYLINNIKSLRHLCEQTLEQLENYMSKSN-AKLLYDFLN 1696
>UNIPROTKB|H0YJN7 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] InterPro:IPR006166 InterPro:IPR020819
SMART:SM00891 GO:GO:0003677 GO:GO:0006259 GO:GO:0090305
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004518 HGNC:HGNC:23168
Gene3D:3.40.50.10130 EMBL:AL121809 Ensembl:ENST00000557110
Bgee:H0YJN7 Uniprot:H0YJN7
Length = 135
Score = 102 (41.0 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 93 PEESCGR-VIVDMREFRSELPVLLHKR---GLYIEPVTISVGDYILSPDICVERKSISDL 148
P+E G ++V E S L V+ R GL +E ++ DYI+S + VER+S S++
Sbjct: 32 PQEGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEM 91
Query: 149 IGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNK 181
+ S+ + Q+Q + + + +++E D K
Sbjct: 92 LNSVNKNKFIEQIQHLQSMFERICVIVEKDREK 124
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 410 397 0.00097 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 610 (65 KB)
Total size of DFA: 240 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 33.12u 0.09s 33.21t Elapsed: 00:00:11
Total cpu time: 33.12u 0.09s 33.21t Elapsed: 00:00:12
Start: Thu Aug 15 11:21:24 2013 End: Thu Aug 15 11:21:36 2013