RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11328
(410 letters)
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative;
structure-specific endonuclease, hydrolase; 1.78A
{Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A
1j25_A
Length = 143
Score = 122 bits (308), Expect = 6e-34
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 40/175 (22%)
Query: 99 RVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLY 158
+V+VD RE RSE+ L G+ +E T+ VGDYI+S D+ +ERKS +DLI S+ G L+
Sbjct: 6 KVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGGLF 65
Query: 159 TQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLS 218
QV+++ Y++P++++E + N
Sbjct: 66 DQVKRLKEAYSRPIMIVEGSLYGIRNVHPN------------------------------ 95
Query: 219 RDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQLFFEL-KQGRDEPSAEVA 272
I + +T+ F + +I+SS P TAQ F + K+ ++E V
Sbjct: 96 --------AIRGAIAAVTVDFG-VPIIFSSTPEETAQYIFLIAKREQEEREKPVR 141
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease,
nucleotide excision repair; 2.8A {Aeropyrum pernix}
SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Length = 219
Score = 109 bits (274), Expect = 2e-28
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 92 EPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGS 151
E RV VD+RE RS +P +L G+ + P + +GDY++S I VERK+ SD S
Sbjct: 3 EDPGGRPRVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKS 62
Query: 152 LQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYL 191
L GRL+ Q ++ HY +++E L
Sbjct: 63 LFDGRLFEQASRLAEHYETVFIIVEGPPVPRRYRGRERSL 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.6 bits (188), Expect = 4e-15
Identities = 85/422 (20%), Positives = 136/422 (32%), Gaps = 150/422 (35%)
Query: 82 VPTEQDGVSTEPEESCGRVIVDMRE-FRSELPVLLHKRGLYIEPVTISVGDYILSPDICV 140
VPT ++++ ++E F LP EP D
Sbjct: 22 VPTASFFIASQ-----------LQEQFNKILP----------EPTEGFAADD-------- 52
Query: 141 ERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFE---LQGNYYLSRDI-- 195
E + ++L+G G + + V+ +L + FE L+GN DI
Sbjct: 53 EPTTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGN-----DIHA 103
Query: 196 -AAKFLIEFDHN--KPFELQGNYYLSRDIAAKSSDITAKLQLL--------TLH------ 238
AAK L E D K EL NY +R +A + D + L L
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 239 ------FPKLRLIWSSGPYNT---------AQLFFELKQGRDEPSAEVASSIG------- 276
F +LR ++ + Y+ A+ EL R AE + G
Sbjct: 164 GNTDDYFEELRDLYQT--YHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWL 219
Query: 277 ----QTPNEDYTDRYNAAIEDFISKLPG-----MAEWSRARTLNLEVLGLNPGQ------ 321
TP++DY IS P +A + ++LG PG+
Sbjct: 220 ENPSNTPDKDYLLSI------PIS-CPLIGVIQLAHYVVT----AKLLGFTPGELRSYLK 268
Query: 322 -----GGNFLTELFRAS-----SFFL-------LLFRIKPAPGRESN---PRPRVTSKNK 361
+T + A SFF+ +LF I G P +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI----GVRCYEAYPNTSLPPSIL 324
Query: 362 AAVLNRGSSLP----ALCKLSEQELCSLVE--NTTL--GNALYKALHTRPE--VSSG--- 408
L +P ++ L+++++ V N+ L G + +L + V SG
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 409 SL 410
SL
Sbjct: 385 SL 386
Score = 47.7 bits (113), Expect = 5e-06
Identities = 60/327 (18%), Positives = 94/327 (28%), Gaps = 104/327 (31%)
Query: 33 VYQCAQSEVKVKVFFMQYGE--------SVEEQAYL-------SD-----LRREKKAFEY 72
V Q A V K+ GE + Q + +D +KA
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 73 LI------QEKT-NMAVPTEQDGVSTEPEE-------SC-----GRVIVDMREFRSELPV 113
L E N ++P S E E S +V + + S LP
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 114 LLHKRGLYIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLL 173
V IS+ + V +S G QS LY + + A L
Sbjct: 363 GKQ--------VEISL---VNGAKNLV----VS---GPPQS--LYGLNLTLRKAKAPSGL 402
Query: 174 L---IEFDHNKP-FELQGNYYLSRDIAAKF----------LIEFD-HNKPFELQGNY--- 215
I F K F + +L +A+ F LI D
Sbjct: 403 DQSRIPFSERKLKFSNR---FL--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 216 --YLS---RDIAAKSSDITAKL--QLLTL--HFPKLRLIWSS-----GPYNTA---QLFF 258
Y + D+ S I+ ++ ++ L + ++ GP + L
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 259 ELKQGRDEPSAEV--ASSIGQTPNEDY 283
K G V A ++ P++DY
Sbjct: 518 RNKDGT---GVRVIVAGTLDINPDDDY 541
Score = 45.0 bits (106), Expect = 4e-05
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 54/154 (35%)
Query: 296 SKLPGMAE------------WSRARTLNLEVLGL--------NP--------GQGGNFLT 327
S+ GM W+RA + G NP G+ G +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 328 ELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVE 387
E + A F E+ ++ ++ +N + SE+ L S +
Sbjct: 1686 ENYSAMIF-------------ETIVDGKLKTEKIFKEINE--HSTSYTFRSEKGLLSATQ 1730
Query: 388 NT-----TLGNALYKALHTR---PEVSS--G-SL 410
T + A ++ L ++ P ++ G SL
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Length = 311
Score = 61.7 bits (148), Expect = 1e-10
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 28/170 (16%)
Query: 100 VIVDMREF-------RSELPVLLHKRGLYIEPVTISVGDYI------------------- 133
+ VD+ E + EL L + + + ++VGD++
Sbjct: 22 LCVDLCETTGGSSVRKQELVKELQRNSVTFDVRKLNVGDFLWVARERVTPVPGQLRPPVG 81
Query: 134 --LSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNYYL 191
L D +ERK + DL GS+ GR Q ++ R + + + +
Sbjct: 82 KELVLDYIIERKRMDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEECGSAAAHLSIPES 141
Query: 192 SRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPK 241
+ A D +Q + + + + Q TL
Sbjct: 142 TLQQAIVNTQVVDGFFVKRVQDAKESAAYLTIMTRYLQKLYQNCTLFCRS 191
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Length = 307
Score = 58.5 bits (140), Expect = 9e-10
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 21/111 (18%)
Query: 100 VIVDMREFRS-----ELPVLLHKRGLYIEPVTISVGDYI----------------LSPDI 138
+ VD+ E R EL L + + + VGD++ L D
Sbjct: 27 LCVDIGETRGGGHRPELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDH 86
Query: 139 CVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDHNKPFELQGNY 189
VERK + DL S+ GR Q ++ R + + + +H L
Sbjct: 87 IVERKRLDDLCSSIIDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSLPE 137
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA
repair, endonuclease, helix-hairpin-helix, DNA binding
protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
PDB: 2kn7_A*
Length = 63
Score = 47.8 bits (114), Expect = 1e-07
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR 402
P V +KN ++++ ++ L LS+ EL S++ N LY +HT
Sbjct: 10 PGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTS 58
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET:
DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Length = 84
Score = 46.4 bits (110), Expect = 4e-07
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 354 PRVTSKNKAAVLNRGSSLPALCKLSEQELCSLVENTTLGNALYKALHTR--PEVSSGS 409
P V +KN ++++ ++ L LS+ EL S++ N LY +HT VS G
Sbjct: 24 PGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSFAEVVSKGK 81
Score = 26.3 bits (58), Expect = 6.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 285 DRYNAAIEDFISKLPGM 301
++YN +DF+ K+PG+
Sbjct: 10 EKYNPGPQDFLLKMPGV 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 6e-07
Identities = 48/349 (13%), Positives = 104/349 (29%), Gaps = 100/349 (28%)
Query: 6 LSSKLRSLKPTSVIFYNADVAAIRQV---EVYQCAQSEVKVK----VFFMQYGESVEEQA 58
L L L+P + + + + + +V C +V+ K +F++ +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 59 YLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLL--- 115
L L + Y I D T + + + + ++EL LL
Sbjct: 198 VLEML----QKLLYQI------------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 116 -HKRGLYI-----EP-------------VT---ISVGDYILSPDICVERKSISDLIGSL- 152
++ L + +T V D++ + S+ +L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSMTLT 299
Query: 153 --QSGRLYTQV---------QQMCRHYAKPLL--LI-EFDHNKPFELQGNY-YLSRDIAA 197
+ L + +++ P +I E + N+ +++ D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWD-NWKHVNCD-KL 355
Query: 198 KFLIE--FDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLHFPKLRLIWSSGPYNTAQ 255
+IE + +P E + + + S+ I L L LIW +
Sbjct: 356 TTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTIL---------LSLIWFDVIKSDVM 405
Query: 256 LFFE-------LKQGRDEPSAEVAS---SIGQTPNEDYT------DRYN 288
+ +++ E + + S + +Y D YN
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Score = 50.2 bits (119), Expect = 9e-07
Identities = 56/343 (16%), Positives = 98/343 (28%), Gaps = 101/343 (29%)
Query: 3 AQDLSSKLRSLKP--TSVI--FYNADVAAIRQVEVYQCAQSEVKVKVFFMQYGESVEEQA 58
QDL ++ + P S+I +A + C + ++ E E +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRK 373
Query: 59 YLSDLRREKKAFEYLIQEKTNMAVPTE------QDGVSTEPEESCGRVIVDMREFRSELP 112
L + + +PT D + ++ +V+
Sbjct: 374 MFDRL--------SVFPPSAH--IPTILLSLIWFDVIKSDVMV-----VVN--------- 409
Query: 113 VLLHKRGL---YIEPVTISVGDYILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYA 169
LHK L + TIS+ P I +E K + +L + + HY
Sbjct: 410 -KLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALH--------RSIVDHYN 454
Query: 170 KPLLLIEFDHNKPFELQG-NY---YLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKS 225
P FD + Y ++ H K E L R +
Sbjct: 455 IPK---TFDSDDLIPPYLDQYFYSHIGH-----------HLKNIEHPERMTLFRMV---- 496
Query: 226 SDITAKLQLLTLHFPKLRLIWSSGPYNT----AQLFFELKQGRDEPSAEVASSIGQTPNE 281
L F + ++ S +N +LK + I N+
Sbjct: 497 --------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--------I--CDND 538
Query: 282 DYTDRYNAAIEDFISKLPGMAEWS-RARTLNLEVLGLNPGQGG 323
+R AI DF LP + E ++ +L + L
Sbjct: 539 PKYERLVNAILDF---LPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 44.5 bits (104), Expect = 5e-05
Identities = 55/425 (12%), Positives = 122/425 (28%), Gaps = 119/425 (28%)
Query: 2 FAQDLSSK--LRSLKPTSVIFYNADVAAI-----RQVEVYQ-----CAQSEVKVKVFFMQ 49
F + K K I ++ I + ++ E V+ F
Sbjct: 29 FVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-- 83
Query: 50 YGESVEEQAY---LSDLRREKKA-------FEYLIQEKTNMAVPTEQDGVSTEPEESCGR 99
E V Y +S ++ E++ + N + VS +
Sbjct: 84 --EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL--K 139
Query: 100 VIVDMREFRSELPVLLH------KRGLYIEPVT--------------ISVGD-------- 131
+ + E R VL+ K + ++ +++ +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 132 -------YILSPDICVERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIEFDH--N-- 180
Y + P+ S++ + S + + + Y LL++ + N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAK 257
Query: 181 --KPFELQGNYYL-SRDIA-AKFLIEF--------DHNKPFELQGNYYLSRDIAAKSSDI 228
F L L +R FL H+ + + K D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDC 313
Query: 229 TAK---LQLLTLHFP-KLRLIWSS---GPYNTAQLFFELKQGRDEPSAEVASSIGQTPNE 281
+ ++LT + P +L +I S G T + D+ + + SS+
Sbjct: 314 RPQDLPREVLTTN-PRRLSIIAESIRDGL-ATWDNW--KHVNCDKLTTIIESSLNVLEPA 369
Query: 282 DYTDRYNA-AI--EDFISKLPGMAEWSRARTLNLEVL--GLNPGQGGNFLTELFRASSFF 336
+Y ++ ++ + +P + L ++ + + +L + S
Sbjct: 370 EYRKMFDRLSVFPPS--AHIPTIL---------LSLIWFDVIKSDVMVVVNKLHKYS--- 415
Query: 337 LLLFR 341
L+ +
Sbjct: 416 -LVEK 419
Score = 37.9 bits (87), Expect = 0.006
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 16/154 (10%)
Query: 179 HNKPFELQGNYYLSRDIAAKFLIEFDHNKPFELQGNYYLSRDIAAKSSDITAKLQLLTLH 238
H+ FE + Y +DI + F F F+ + + + I +I +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAV 61
Query: 239 FPKLRLIWS--SGPYNTAQLFFELKQGRDEPSAE-VASSIGQTPNE--DYTDRYNAAIED 293
LRL W+ S Q F E + + + S I + T Y +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 294 FISKLPGMAEWSRAR-----TLNLEVLGLNPGQG 322
+ A+++ +R L +L L P +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 33.1 bits (76), Expect = 0.15
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 EEQAYLSDLRREKKAFEYLIQEKTNMAVPTEQDGVSTEPEESCGRVIVDMREFR-SELPV 113
E + + + + L + + P V + + + G I M++ R +LPV
Sbjct: 366 EARNFKEPVNEHGHWWWSLAIAELELPAPP----VILKSDATVGEAIALMKKHRVDQLPV 421
Query: 114 LLHKRG 119
+ G
Sbjct: 422 VDQDDG 427
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.55
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 141 ERKSISDLIGSLQSGRLYTQVQQMCRHYAKPLLLIE 176
E++++ L SL +LY + P L I+
Sbjct: 18 EKQALKKLQASL---KLYAD-------DSAPALAIK 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.89
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 95 ESCGRV----IVDMR-EFRS 109
CG V +VD R E+R+
Sbjct: 46 ALCGLVLSDKLVDTRSEWRT 65
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 28.8 bits (64), Expect = 4.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 307 ARTLNLEVLGLNPGQGGNFLTELFRASSFFLLLFRIKPAPGRESNPRPRVTSKNKAAV 364
ARTLNL+ G+ G N + + A + F L R P R S +V + + A
Sbjct: 362 ARTLNLQDYGIAAGNSANLI--ILPAENGFDALRR--QVPVRYSVRGGKVIASTQPAQ 415
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural
genomics, MCSG, protein structure initiative; 1.90A
{Bacillus anthracis}
Length = 142
Score = 27.2 bits (60), Expect = 6.4
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 80 MAVPTEQDGVSTEPEESCGRVIVDMREFRSELPVLLHKRGLYIEPVTIS 128
+ + E + + CG + + E+ + I +
Sbjct: 72 ICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAITNAKQDIIFKPLK 120
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 26.8 bits (60), Expect = 8.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 47 FMQYGESVEEQAYLSDLRREKKAFEYLIQEKTNMAVP-TEQDGVSTEPEESC-GRVI 101
F++ GE VEE A RE ++E+T + V + GV ++PE V+
Sbjct: 45 FVEVGERVEEAA-----ARE-------MREETGLEVRLHKLMGVYSDPERDPRAHVV 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,028,618
Number of extensions: 358191
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 684
Number of HSP's successfully gapped: 22
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)