BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11330
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|F Chain F, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 188
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 104/184 (56%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Query: 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 402
+ + + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ
Sbjct: 1 MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 403 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 462
+GA L+D+ REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 463 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 522
+E L+N +ISVPK+ +LNCA F GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179
Query: 523 ARDK 526
ARDK
Sbjct: 180 ARDK 183
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 98/177 (55%), Positives = 140/177 (79%), Gaps = 1/177 (0%)
Query: 41 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 100
+ + + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ
Sbjct: 1 MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 101 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 160
+GA L+D+ REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 161 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 217
+E L+N +ISVPK+ +LNCA F GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE 176
>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer
Length = 157
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 127/156 (81%)
Query: 62 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 121
K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ +GA L+D+ REKNGKRE
Sbjct: 2 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 122 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 181
K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+ +LNCA
Sbjct: 62 KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 182 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 217
F GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE 157
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 127/156 (81%)
Query: 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 423
K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ +GA L+D+ REKNGKRE
Sbjct: 2 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 424 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 483
K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+ +LNCA
Sbjct: 62 KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 484 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 519
F GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE 157
>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|H Chain H, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|N Chain N, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|T Chain T, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 283
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 414 YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 473
Y K +R++K+L+ILQF+ LW +F D L ++++ + Y +++ + +FI
Sbjct: 165 YITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI-- 222
Query: 474 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 525
P + +++C FV GI++ L N GF VTAH + T Y+IQFD QV+ R+
Sbjct: 223 PGE--NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDRE 278
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 112 YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 171
Y K +R++K+L+ILQF+ LW +F D L ++++ + Y +++ + +FI
Sbjct: 165 YITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI-- 222
Query: 172 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 218
P + +++C FV GI++ L N GF VTAH + T Y+IQFD Q
Sbjct: 223 PGE--NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 62 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYR 113
+ + S++ A LF E++ + +F++KL + G +IG +L+++ +R
Sbjct: 54 RQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFR 105
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYR 415
+ + S++ A LF E++ + +F++KL + G +IG +L+++ +R
Sbjct: 54 RQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFR 105
>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|D Chain D, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 158
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 93 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 152
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 153 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 203
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 395 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 454
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 455 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 505
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6
pdb|2BJN|B Chain B, X-Ray Structure Of Human Tpc6
Length = 160
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 93 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 152
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 36 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 91
Query: 153 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 203
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 92 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 143
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 395 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 454
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 36 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 91
Query: 455 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 505
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 92 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 143
>pdb|3KXC|C Chain C, Mutant Transport Protein
Length = 158
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 93 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 152
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 153 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 203
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 395 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 454
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 455 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 505
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
>pdb|2C0J|B Chain B, Crystal Structure Of The Bet3-Trs33 Heterodimer
Length = 160
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 82 QNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 141
Q SLSV E VGQ++G +L RE RE L++L+F+ +LW +F K
Sbjct: 31 QKMSLSVLEGMG--FRVGQALGERLP-----RETLAFRE--ELDVLKFLCKDLWVAVFQK 81
Query: 142 ECDKLERANDDERTYYLIEQESLVNKF-ISVPKDKG------SLNCAIFVAGIVEAVLNN 194
+ D L + + TY L + N F + +P G + F G++ L
Sbjct: 82 QMDSLR--TNHQGTYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYT 134
Query: 195 CGFKSTVTA 203
G +S VTA
Sbjct: 135 LGIESVVTA 143
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 384 QNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 443
Q SLSV E VGQ++G +L RE RE L++L+F+ +LW +F K
Sbjct: 31 QKMSLSVLEGMG--FRVGQALGERLP-----RETLAFRE--ELDVLKFLCKDLWVAVFQK 81
Query: 444 ECDKLERANDDERTYYLIEQESLVNKF-ISVPKDKG------SLNCAIFVAGIVEAVLNN 496
+ D L + + TY L + N F + +P G + F G++ L
Sbjct: 82 QMDSLR--TNHQGTYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYT 134
Query: 497 CGFKSTVTA 505
G +S VTA
Sbjct: 135 LGIESVVTA 143
>pdb|2J3T|B Chain B, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 159
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 82 QNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 141
Q SLSV E VGQ++G +L RE RE L++L+F+ +LW +F K
Sbjct: 30 QKMSLSVLEGMG--FRVGQALGERLP-----RETLAFRE--ELDVLKFLCKDLWVAVFQK 80
Query: 142 ECDKLERANDDERTYYLIEQESLVNKF-ISVPKDKG------SLNCAIFVAGIVEAVLNN 194
+ D L + + TY L + N F + +P G + F G++ L
Sbjct: 81 QMDSLR--TNHQGTYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYT 133
Query: 195 CGFKSTVTA 203
G +S VTA
Sbjct: 134 LGIESVVTA 142
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 384 QNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 443
Q SLSV E VGQ++G +L RE RE L++L+F+ +LW +F K
Sbjct: 30 QKMSLSVLEGMG--FRVGQALGERLP-----RETLAFRE--ELDVLKFLCKDLWVAVFQK 80
Query: 444 ECDKLERANDDERTYYLIEQESLVNKF-ISVPKDKG------SLNCAIFVAGIVEAVLNN 496
+ D L + + TY L + N F + +P G + F G++ L
Sbjct: 81 QMDSLR--TNHQGTYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYT 133
Query: 497 CGFKSTVTA 505
G +S VTA
Sbjct: 134 LGIESVVTA 142
>pdb|1VHV|A Chain A, Crystal Structure Of Diphthine Synthase
pdb|1VHV|B Chain B, Crystal Structure Of Diphthine Synthase
Length = 268
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 136 KNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD----------------KGSLN 179
+ FGK +LER++ +E ++ LIE+ + + VP D KG
Sbjct: 59 EEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPXVATTHSAIKLEAERKGVKT 118
Query: 180 CAIFVAGIVEAV-----LNNCGFKSTVTAHWHKGTT 210
I A I AV L+N F + T WH+ T
Sbjct: 119 RIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQT 154
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 438 KNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD----------------KGSLN 481
+ FGK +LER++ +E ++ LIE+ + + VP D KG
Sbjct: 59 EEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPXVATTHSAIKLEAERKGVKT 118
Query: 482 CAIFVAGIVEAV-----LNNCGFKSTVTAHWHKGTT 512
I A I AV L+N F + T WH+ T
Sbjct: 119 RIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQT 154
>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|E Chain E, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|J Chain J, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|K Chain K, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|P Chain P, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|Q Chain Q, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|V Chain V, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|W Chain W, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 193
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 367 ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE--I 423
I+ L+ L + +V Q CQ+ + L+ +G +IG +LI+ R + E +
Sbjct: 25 INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLV 84
Query: 424 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 483
K +L ++ NI + + ++ T+ LI E+ + F+ +P D +
Sbjct: 85 KTSEVLSKCAFKIFLNI----TPNITNWSHNKDTFSLILDENPLADFVELPMDAMK---S 137
Query: 484 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQV 521
++ + I+ VL KG+ M+Q D V
Sbjct: 138 LWYSNILCGVL--------------KGSLEMVQLDCDV 161
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 65 ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE--I 121
I+ L+ L + +V Q CQ+ + L+ +G +IG +LI+ R + E +
Sbjct: 25 INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLV 84
Query: 122 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 181
K +L ++ NI + + ++ T+ LI E+ + F+ +P D +
Sbjct: 85 KTSEVLSKCAFKIFLNI----TPNITNWSHNKDTFSLILDENPLADFVELPMDAMK---S 137
Query: 182 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFD 216
++ + I+ VL KG+ M+Q D
Sbjct: 138 LWYSNILCGVL--------------KGSLEMVQLD 158
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 66 SINLYALLFSELVQYCQNKSLSV---PEFQSKLHEVGQSIGAKLIDINFYREKNGKREIK 122
S+ +A F E+ +Y ++ Q +LH VG S G + I F + + IK
Sbjct: 107 SVEFWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIK 166
Query: 123 ----------------LLNILQFVKINLWKNIFGKE 142
L+N L+FV +L+K IFG +
Sbjct: 167 TFYALAPVATVKYTKSLINKLRFVPQSLFKFIFGDK 202
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 368 SINLYALLFSELVQYCQNKSLSV---PEFQSKLHEVGQSIGAKLIDINFYREKNGKREIK 424
S+ +A F E+ +Y ++ Q +LH VG S G + I F + + IK
Sbjct: 107 SVEFWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIK 166
Query: 425 ----------------LLNILQFVKINLWKNIFGKE 444
L+N L+FV +L+K IFG +
Sbjct: 167 TFYALAPVATVKYTKSLINKLRFVPQSLFKFIFGDK 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,967,310
Number of Sequences: 62578
Number of extensions: 608216
Number of successful extensions: 1698
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1676
Number of HSP's gapped (non-prelim): 26
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)