Query psy11330
Match_columns 526
No_of_seqs 288 out of 785
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 15:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00391 transport protein par 100.0 5E-53 1.1E-57 398.0 16.8 159 367-526 1-165 (168)
2 KOG3315|consensus 100.0 6.8E-53 1.5E-57 392.6 15.2 183 343-526 4-187 (191)
3 KOG3315|consensus 100.0 1.4E-52 3.1E-57 390.4 15.3 185 43-242 6-191 (191)
4 PTZ00391 transport protein par 100.0 1.3E-51 2.8E-56 388.4 16.9 162 65-241 1-168 (168)
5 PF04051 TRAPP: Transport prot 100.0 2.1E-43 4.5E-48 326.7 16.6 147 371-520 1-152 (152)
6 COG5128 Transport protein part 100.0 4.7E-44 1E-48 333.1 12.0 176 350-526 24-205 (208)
7 PF04051 TRAPP: Transport prot 100.0 8.6E-43 1.9E-47 322.6 16.2 146 69-217 1-151 (152)
8 COG5128 Transport protein part 100.0 3E-43 6.6E-48 327.7 12.3 169 49-218 25-199 (208)
9 KOG3316|consensus 100.0 1.1E-36 2.4E-41 279.7 12.7 146 369-519 4-162 (163)
10 KOG3316|consensus 100.0 1.5E-35 3.2E-40 272.4 13.0 145 68-217 5-162 (163)
11 KOG3330|consensus 100.0 6.2E-32 1.3E-36 249.8 8.4 157 364-523 13-176 (183)
12 KOG3330|consensus 100.0 6.9E-30 1.5E-34 236.2 8.4 154 62-218 13-173 (183)
13 COG1719 Predicted hydrocarbon 86.4 17 0.00038 34.5 12.9 106 90-217 46-157 (158)
14 COG1719 Predicted hydrocarbon 82.8 15 0.00033 34.9 10.8 106 392-519 46-157 (158)
15 PF09536 DUF2378: Protein of u 51.5 29 0.00063 33.8 5.3 38 480-517 137-177 (178)
16 TIGR02265 Mxa_TIGR02265 Myxoco 49.2 23 0.00051 34.6 4.2 37 481-517 139-178 (179)
17 TIGR02265 Mxa_TIGR02265 Myxoco 48.4 24 0.00052 34.6 4.1 35 180-214 140-177 (179)
18 TIGR02019 BchJ bacteriochlorop 46.2 1.7E+02 0.0038 28.9 9.7 131 64-213 43-188 (188)
19 PF09536 DUF2378: Protein of u 45.0 33 0.00072 33.4 4.6 35 180-214 139-176 (178)
20 TIGR02019 BchJ bacteriochlorop 41.0 1.6E+02 0.0035 29.2 8.6 131 366-515 43-188 (188)
21 PF02830 V4R: V4R domain; Int 40.2 58 0.0013 25.8 4.6 35 482-516 21-61 (62)
22 PF02830 V4R: V4R domain; Int 35.3 77 0.0017 25.2 4.5 34 181-214 22-61 (62)
23 KOG0037|consensus 28.5 1.9E+02 0.0042 29.5 7.0 83 350-439 98-190 (221)
24 PHA03072 putative viral membra 26.0 17 0.00038 35.7 -0.7 27 285-311 139-179 (190)
25 PF06505 XylR_N: Activator of 25.2 1.8E+02 0.0039 26.1 5.6 42 65-111 25-66 (103)
26 PF05266 DUF724: Protein of un 24.6 2E+02 0.0043 28.4 6.2 52 365-416 41-103 (190)
No 1
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=5e-53 Score=397.95 Aligned_cols=159 Identities=47% Similarity=0.790 Sum_probs=153.9
Q ss_pred chHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCCccc
Q psy11330 367 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECD 446 (526)
Q Consensus 367 VS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGKqaD 446 (526)
||+|+|+|||+|||+|+++++++++|+++||+++||+||.||+|++..|++..+|+++++|+|+|||+++|+.+||||+|
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD 80 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe------cCceEEEEEechh
Q psy11330 447 KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQ 520 (526)
Q Consensus 447 ~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~------~~~t~f~IKf~~~ 520 (526)
+| +++||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+||||+ +.+|+|+|||+++
T Consensus 81 ~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~ 159 (168)
T PTZ00391 81 LL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPE 159 (168)
T ss_pred hh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHH
Confidence 99 4567999999999999999999999999999999999999999999999999999998 4699999999999
Q ss_pred hhhccC
Q psy11330 521 VIARDK 526 (526)
Q Consensus 521 v~~Re~ 526 (526)
|++||+
T Consensus 160 v~~Re~ 165 (168)
T PTZ00391 160 VIEREK 165 (168)
T ss_pred HHHHHh
Confidence 999996
No 2
>KOG3315|consensus
Probab=100.00 E-value=6.8e-53 Score=392.56 Aligned_cols=183 Identities=52% Similarity=0.951 Sum_probs=177.6
Q ss_pred ccccccCCCCccccccccccCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCc
Q psy11330 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE 422 (526)
Q Consensus 343 ~~~~~~~~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~ 422 (526)
+..+.++.+++|+|++|+ ++|.|||+|+|+|||+|||+|+|+++.++.|++.+|+++||+||.||+|++..|+++.+|+
T Consensus 4 ~~~s~~~~~s~il~~~L~-~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kRE 82 (191)
T KOG3315|consen 4 IKASTMRIPSNILDKSLS-KGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRE 82 (191)
T ss_pred ccccccccccchhhhhhh-ccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhH
Confidence 445677889999999998 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceE
Q psy11330 423 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKST 502 (526)
Q Consensus 423 ~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~ 502 (526)
++++++|.||+.++||++|||.+|.|+++++++++|||+|++|++++|||+|+|++.|||++|+||||+|+|.+.||||+
T Consensus 83 tkilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpck 162 (191)
T KOG3315|consen 83 TKILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCK 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec-CceEEEEEechhhhhccC
Q psy11330 503 VTAHWH-KGTTYMIQFDEQVIARDK 526 (526)
Q Consensus 503 VTA~~~-~~t~f~IKf~~~v~~Re~ 526 (526)
||||++ .+|+++|||+++|++||+
T Consensus 163 VTAh~~P~gt~~~IkF~~~Viare~ 187 (191)
T KOG3315|consen 163 VTAHWHPEGTTYLIKFDESVIAREG 187 (191)
T ss_pred eeeeecCCCCeEEEEecHHHHhhhh
Confidence 999995 799999999999999985
No 3
>KOG3315|consensus
Probab=100.00 E-value=1.4e-52 Score=390.37 Aligned_cols=185 Identities=50% Similarity=0.899 Sum_probs=177.1
Q ss_pred eccCCCCCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCccccc
Q psy11330 43 ISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIK 122 (526)
Q Consensus 43 ~~~~~~~~~i~dr~l~~~~~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d 122 (526)
.+.++..++||||||+ ++|+|||+|+|+|||+|||+|+++++.++.|+|.+|+++||+||.||+|++.+|+++++|+++
T Consensus 6 ~s~~~~~s~il~~~L~-~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtk 84 (191)
T KOG3315|consen 6 ASTMRIPSNILDKSLS-KGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETK 84 (191)
T ss_pred ccccccccchhhhhhh-ccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHH
Confidence 3445567799999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEE
Q psy11330 123 LLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT 202 (526)
Q Consensus 123 ~ldiLkFIck~~Wk~lFGKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VT 202 (526)
++.+|.||+.++||++|||.+|.|+|++++.++|||+|++|++++|||+|+|++.|||++|+||||+|+|+++||||+||
T Consensus 85 ilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVT 164 (191)
T KOG3315|consen 85 ILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVT 164 (191)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec-CcEEEEEEeccccchhhHhhHHHHHHHHHhhhhccC
Q psy11330 203 AHWH-KGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGA 242 (526)
Q Consensus 203 A~~~-~~t~f~IKf~~~~~~~t~~~~~~~~~~~~~~~~~~~ 242 (526)
|||+ .+|+++|||+++ +|||-.++++
T Consensus 165 Ah~~P~gt~~~IkF~~~--------------Viare~~l~~ 191 (191)
T KOG3315|consen 165 AHWHPEGTTYLIKFDES--------------VIAREGLLEG 191 (191)
T ss_pred eeecCCCCeEEEEecHH--------------HHhhhhhhcC
Confidence 9997 799999999999 9999877653
No 4
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=1.3e-51 Score=388.39 Aligned_cols=162 Identities=44% Similarity=0.730 Sum_probs=155.9
Q ss_pred chHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhhcCccc
Q psy11330 65 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECD 144 (526)
Q Consensus 65 VS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lFGKqaD 144 (526)
||+|+|+|||+|||+|+++++++++|+|+||+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD 80 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence 79999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEe------cCcEEEEEEeccc
Q psy11330 145 KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQ 218 (526)
Q Consensus 145 ~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~------~~~t~f~IKf~~~ 218 (526)
+| +++||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+||||+ +.+|+|+|||+++
T Consensus 81 ~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~ 159 (168)
T PTZ00391 81 LL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPE 159 (168)
T ss_pred hh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHH
Confidence 99 5567999999999999999999999999999999999999999999999999999998 3689999999999
Q ss_pred cchhhHhhHHHHHHHHHhhhhcc
Q psy11330 219 EGKFTALQLQIMEENIASQWRRG 241 (526)
Q Consensus 219 ~~~~t~~~~~~~~~~~~~~~~~~ 241 (526)
||+|+++.|
T Consensus 160 --------------v~~Re~~~~ 168 (168)
T PTZ00391 160 --------------VIEREKSIQ 168 (168)
T ss_pred --------------HHHHHhhcC
Confidence 999999875
No 5
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=2.1e-43 Score=326.72 Aligned_cols=147 Identities=34% Similarity=0.642 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCCccccccc
Q psy11330 371 LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLER 450 (526)
Q Consensus 371 ~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGKqaD~Le~ 450 (526)
+|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.|.+..+||++++|+++||||++|+++||||+|+|+
T Consensus 1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~- 78 (152)
T PF04051_consen 1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLK- 78 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEE-
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence 69999999999999954 8999999999999999999999999886668999999999999999999999999999999
Q ss_pred ccCC-CCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe----cCceEEEEEechh
Q psy11330 451 ANDD-ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW----HKGTTYMIQFDEQ 520 (526)
Q Consensus 451 stn~-~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~----~~~t~f~IKf~~~ 520 (526)
+|| +|+|+|+|++|.+++|+++|++++.++|++|+||||||||+++||+|+||||. +|+|+|+|||++.
T Consensus 79 -~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~~f~Ik~~~~ 152 (152)
T PF04051_consen 79 -TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNGPQTTFQIKFEKQ 152 (152)
T ss_dssp -EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGTTEEEEEEEEEHH
T ss_pred -ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCCCCeEEEEEEecC
Confidence 677 99999999999999999999988999999999999999999999999999998 3789999999863
No 6
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-44 Score=333.11 Aligned_cols=176 Identities=32% Similarity=0.698 Sum_probs=169.2
Q ss_pred CCCccccccccccCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHH
Q psy11330 350 PKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNIL 429 (526)
Q Consensus 350 ~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiL 429 (526)
-+++||+++|. -.+++|++|+|+|||+||++|+++...++.|+|++|.++||+||+||+|++.+|.++++|+.+++++|
T Consensus 24 m~~~vy~qnl~-~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iL 102 (208)
T COG5128 24 MGKSVYEQNLK-IMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTIL 102 (208)
T ss_pred cchhHHHHhHH-HHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHH
Confidence 45678999994 67789999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHhhhCCcccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe--
Q psy11330 430 QFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-- 507 (526)
Q Consensus 430 kFIck~~Wk~lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~-- 507 (526)
+||+-++|+++||+.+|.|+|+.+.+++|||.||+|++++|||+|+++.+++|.+|+||||+|+|.+.||||+||||.
T Consensus 103 q~ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P 182 (208)
T COG5128 103 QRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEP 182 (208)
T ss_pred HHHHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----cCceEEEEEechhhhhccC
Q psy11330 508 ----HKGTTYMIQFDEQVIARDK 526 (526)
Q Consensus 508 ----~~~t~f~IKf~~~v~~Re~ 526 (526)
+.+|+|+|+|++.|++||.
T Consensus 183 ~~~~p~Rtv~lI~~d~~vi~re~ 205 (208)
T COG5128 183 SENLPNRTVFLIRIDDLVIAREE 205 (208)
T ss_pred ccCCCcceEEEEEecHHHHhhhh
Confidence 5699999999999999983
No 7
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=8.6e-43 Score=322.63 Aligned_cols=146 Identities=34% Similarity=0.645 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhhcCccccccc
Q psy11330 69 LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLER 148 (526)
Q Consensus 69 ~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lFGKqaD~Lek 148 (526)
+|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.|.+..+|+.+++|+++||||++|+++||||+|+|+
T Consensus 1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~- 78 (152)
T PF04051_consen 1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLK- 78 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEE-
T ss_pred CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence 69999999999999944 8899999999999999999999999886668999999999999999999999999999998
Q ss_pred ccCC-CCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEec----CcEEEEEEecc
Q psy11330 149 ANDD-ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWH----KGTTYMIQFDE 217 (526)
Q Consensus 149 stn~-~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~~----~~t~f~IKf~~ 217 (526)
+|| +|+|+|+|++|++++|+++|++++.++|++|+||||||||+++||+|+||||.+ |+|+|+|||++
T Consensus 79 -~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~~f~Ik~~~ 151 (152)
T PF04051_consen 79 -TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNGPQTTFQIKFEK 151 (152)
T ss_dssp -EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGTTEEEEEEEEEH
T ss_pred -ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCCCCeEEEEEEec
Confidence 677 999999999999999999999889999999999999999999999999999983 77999999986
No 8
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-43 Score=327.72 Aligned_cols=169 Identities=31% Similarity=0.696 Sum_probs=163.9
Q ss_pred CCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHH
Q psy11330 49 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQ 128 (526)
Q Consensus 49 ~~~i~dr~l~~~~~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLk 128 (526)
++++|++||. -.+++|++|+|+|||+||++|+++..++++|+|.+|.++||+||+||+|++.+|.++++|+++++++|+
T Consensus 25 ~~~vy~qnl~-~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq 103 (208)
T COG5128 25 GKSVYEQNLK-IMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQ 103 (208)
T ss_pred chhHHHHhHH-HHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHH
Confidence 5699999994 778899999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHhhcCcccccccccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEe---
Q psy11330 129 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW--- 205 (526)
Q Consensus 129 FIck~~Wk~lFGKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~--- 205 (526)
||+.++|+++||+.+|.|+|+.+.+++|||.||+|++++|||+|+++.+++|.+|+||||+|+|.++||||+||||.
T Consensus 104 ~ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~ 183 (208)
T COG5128 104 RIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPS 183 (208)
T ss_pred HHHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---cCcEEEEEEeccc
Q psy11330 206 ---HKGTTYMIQFDEQ 218 (526)
Q Consensus 206 ---~~~t~f~IKf~~~ 218 (526)
+.+|+|+|+|++.
T Consensus 184 ~~~p~Rtv~lI~~d~~ 199 (208)
T COG5128 184 ENLPNRTVFLIRIDDL 199 (208)
T ss_pred cCCCcceEEEEEecHH
Confidence 3589999999999
No 9
>KOG3316|consensus
Probab=100.00 E-value=1.1e-36 Score=279.72 Aligned_cols=146 Identities=24% Similarity=0.349 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHccCC---------hhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHh
Q psy11330 369 INLYALLFSELVQYCQNKSLS---------VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKN 439 (526)
Q Consensus 369 ~s~Fa~Lf~EiV~y~~~~~~~---------~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~ 439 (526)
.-+|++|+.|||.++.+..++ ..+..++||.|||+||++|.||++ +++ +|+.|.||+|||||||+|+.
T Consensus 4 ~v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~-~e~--~rf~deLeimKFiCkDfW~~ 80 (163)
T KOG3316|consen 4 EVLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT-RER--NRFKDELEIMKFICKDFWSI 80 (163)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh-hhh--hhHHHHHHHHHHHHHHHHHH
Confidence 346999999999998886433 234668999999999999999997 664 79999999999999999999
Q ss_pred hhCCcccccccccCCCCEEEEEcCCcccccceeccCCC--CCcccchhhHHHHHHHHhhCCCceEEEEEe--cCceEEEE
Q psy11330 440 IFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDK--GSLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMI 515 (526)
Q Consensus 440 lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~--~~L~y~af~cGIIRGAL~slGf~a~VTA~~--~~~t~f~I 515 (526)
+|+||+|||+ |||+|+||++|+.|.|.+.+|-.+++ ....|++||||+|||+|.+||++|.|||++ .|.|.|+|
T Consensus 81 VF~KQiDNLr--TNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~slPtckFhV 158 (163)
T KOG3316|consen 81 VFKKQIDNLR--TNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVSSLPTCKFHV 158 (163)
T ss_pred HHhhhhhhcc--ccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecCCCCceEEEE
Confidence 9999999999 99999999999999998888744433 234799999999999999999999999999 69999999
Q ss_pred Eech
Q psy11330 516 QFDE 519 (526)
Q Consensus 516 Kf~~ 519 (526)
++.+
T Consensus 159 ~v~~ 162 (163)
T KOG3316|consen 159 QVQP 162 (163)
T ss_pred EecC
Confidence 9865
No 10
>KOG3316|consensus
Probab=100.00 E-value=1.5e-35 Score=272.38 Aligned_cols=145 Identities=24% Similarity=0.357 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHhcCC---------hhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHh
Q psy11330 68 NLYALLFSELVQYCQNKSLS---------VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNI 138 (526)
Q Consensus 68 s~fa~Lf~EiV~y~~~~~~~---------~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~l 138 (526)
-+|++|+.|||+++.+..++ ..+..++||.|||+||++|.|+++ +++ +|+.|.||++||||||+|+.+
T Consensus 5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~-~e~--~rf~deLeimKFiCkDfW~~V 81 (163)
T KOG3316|consen 5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT-RER--NRFKDELEIMKFICKDFWSIV 81 (163)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh-hhh--hhHHHHHHHHHHHHHHHHHHH
Confidence 46999999999998876332 234668999999999999999997 765 799999999999999999999
Q ss_pred hcCcccccccccCCCCeEEEEcCCcccccccccCCCC--CCcccchhhHHHHHHHhhhCCCceEEEEEe--cCcEEEEEE
Q psy11330 139 FGKECDKLERANDDERTYYLIEQESLVNKFISVPKDK--GSLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQ 214 (526)
Q Consensus 139 FGKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~--~~L~y~af~cGIIrGAL~slGf~a~VTA~~--~~~t~f~IK 214 (526)
|+||+|||+ |||+|+||++|+.|.|.+.+|-.+++ ....|++||||+|||+|.+||++|.|||++ .|.|.|.|+
T Consensus 82 F~KQiDNLr--TNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~slPtckFhV~ 159 (163)
T KOG3316|consen 82 FKKQIDNLR--TNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVSSLPTCKFHVQ 159 (163)
T ss_pred Hhhhhhhcc--ccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecCCCCceEEEEE
Confidence 999999999 99999999999999998888744433 234789999999999999999999999999 499999999
Q ss_pred ecc
Q psy11330 215 FDE 217 (526)
Q Consensus 215 f~~ 217 (526)
+.+
T Consensus 160 v~~ 162 (163)
T KOG3316|consen 160 VQP 162 (163)
T ss_pred ecC
Confidence 865
No 11
>KOG3330|consensus
Probab=99.97 E-value=6.2e-32 Score=249.75 Aligned_cols=157 Identities=18% Similarity=0.290 Sum_probs=143.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCC
Q psy11330 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 443 (526)
Q Consensus 364 ~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGK 443 (526)
..++|.++|.++|++||.++++++++.++|+.+|++|||+||.||+|.|++|. +-+||.|+.++.+.|||..+|+++|.
T Consensus 13 ~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkmyLgi 91 (183)
T KOG3330|consen 13 SKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKMYLGI 91 (183)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhheeeec
Confidence 36799999999999999999999999999999999999999999999999997 48999999999999999999999999
Q ss_pred cccccccccCCCCEE-EEEcCCcccccceeccCC-CCCcccchhhHHHHHHHHhhCCCceEEEEEe-----cCceEEEEE
Q psy11330 444 ECDKLERANDDERTY-YLIEQESLVNKFISVPKD-KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQ 516 (526)
Q Consensus 444 qaD~Le~stn~~g~Y-vI~DnnPl~~~fVS~P~e-~~~L~y~af~cGIIRGAL~slGf~a~VTA~~-----~~~t~f~IK 516 (526)
++..--| +.+.++| +|.|+|||+. ||+.|++ .+.|+|++++||+|||||+++.+.+.|++.. +..|+++|+
T Consensus 92 tpsitsw-ss~~~efsliLe~NPL~e-fVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~ 169 (183)
T KOG3330|consen 92 TPSITSW-SSDGNEFSLILEDNPLVE-FVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVR 169 (183)
T ss_pred ccceeee-cCCCCEEEEEecCCcHHH-HHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeee
Confidence 9988754 4677889 7789999999 9977765 6789999999999999999999999999987 567999999
Q ss_pred echhhhh
Q psy11330 517 FDEQVIA 523 (526)
Q Consensus 517 f~~~v~~ 523 (526)
|.+.+-+
T Consensus 170 f~r~lkd 176 (183)
T KOG3330|consen 170 FLRILKD 176 (183)
T ss_pred HHHHHhh
Confidence 9977643
No 12
>KOG3330|consensus
Probab=99.96 E-value=6.9e-30 Score=236.20 Aligned_cols=154 Identities=18% Similarity=0.293 Sum_probs=141.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhhcC
Q psy11330 62 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 141 (526)
Q Consensus 62 ~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lFGK 141 (526)
..++|.++|.++|+.||.++++++++.++++.+|++|||+||.||+|.+++|. +-+||.|+.++.+.|||..+|+++|.
T Consensus 13 ~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkmyLgi 91 (183)
T KOG3330|consen 13 SKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKMYLGI 91 (183)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhheeeec
Confidence 34799999999999999999999999999999999999999999999999996 48999999999999999999999999
Q ss_pred cccccccccCCCCeE-EEEcCCcccccccccCCC-CCCcccchhhHHHHHHHhhhCCCceEEEEEe-----cCcEEEEEE
Q psy11330 142 ECDKLERANDDERTY-YLIEQESLVNKFISVPKD-KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQ 214 (526)
Q Consensus 142 qaD~Lekstn~~g~Y-vI~DnnPL~~~fIS~P~e-~~~L~y~af~cGIIrGAL~slGf~a~VTA~~-----~~~t~f~IK 214 (526)
++..-. |+.+.++| +|.|+|||+. ||+.|++ .+.|+|++++||+|||||+++++.+.|++.. +..|+++|+
T Consensus 92 tpsits-wss~~~efsliLe~NPL~e-fVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~ 169 (183)
T KOG3330|consen 92 TPSITS-WSSDGNEFSLILEDNPLVE-FVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVR 169 (183)
T ss_pred ccceee-ecCCCCEEEEEecCCcHHH-HHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeee
Confidence 998864 56788999 6679999998 9977765 5779999999999999999999999999887 367999999
Q ss_pred eccc
Q psy11330 215 FDEQ 218 (526)
Q Consensus 215 f~~~ 218 (526)
|.+.
T Consensus 170 f~r~ 173 (183)
T KOG3330|consen 170 FLRI 173 (183)
T ss_pred HHHH
Confidence 9876
No 13
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=86.37 E-value=17 Score=34.48 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=63.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhhcCcccccccccCCCCeEEEEcCCccccccc
Q psy11330 90 EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFI 169 (526)
Q Consensus 90 eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lFGKqaD~Lekstn~~g~YvI~DnnPL~~~fI 169 (526)
.....+..+|+.+|..++.. .+ ..++..|+. +|...++.-.+. + .+......+.|..+...
T Consensus 46 ~~~~~~y~~G~~~G~~l~~~--------~~---~~~~~~f~~--~~~~~~~~v~~~-~--~~~~~~v~v~~c~~c~~--- 106 (158)
T COG1719 46 GAEPVLYEAGKEIGKALIKE--------KL---IEELENFLE--FWEEVGGGVLEV-E--EEEPLVVEVYDCIECAG--- 106 (158)
T ss_pred CcHHHHHHHHHHHHHHhcch--------hc---hHHHHHHHH--HHHhhcceEEEc-c--cCCCceEEEEcCchhhc---
Confidence 34467888999999988861 12 234444443 388877774443 2 22234455555555322
Q ss_pred ccCCCCCCcccchhhHHHHHHHhhhCCCce-EE-----EEEecCcEEEEEEecc
Q psy11330 170 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKS-TV-----TAHWHKGTTYMIQFDE 217 (526)
Q Consensus 170 S~P~e~~~L~y~af~cGIIrGAL~slGf~a-~V-----TA~~~~~t~f~IKf~~ 217 (526)
+|. . .=.-+.|.+|+|.|+|+...=+- .| .+.=++.|+|.|+...
T Consensus 107 -~p~-~-~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 107 -LPG-I-GEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred -CCC-C-CCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEecC
Confidence 343 1 22247899999999999764332 22 1222689999998754
No 14
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=82.84 E-value=15 Score=34.85 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEEEcCCcccccce
Q psy11330 392 EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFI 471 (526)
Q Consensus 392 eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fV 471 (526)
+....+.++|+.+|..++.. ....++..|+.- |...++.-.+. + .+...+..+.|..+...
T Consensus 46 ~~~~~~y~~G~~~G~~l~~~-----------~~~~~~~~f~~~--~~~~~~~v~~~-~--~~~~~~v~v~~c~~c~~--- 106 (158)
T COG1719 46 GAEPVLYEAGKEIGKALIKE-----------KLIEELENFLEF--WEEVGGGVLEV-E--EEEPLVVEVYDCIECAG--- 106 (158)
T ss_pred CcHHHHHHHHHHHHHHhcch-----------hchHHHHHHHHH--HHhhcceEEEc-c--cCCCceEEEEcCchhhc---
Confidence 44567888999999998861 123444444422 77777664433 2 22234555566554322
Q ss_pred eccCCCCCcccchhhHHHHHHHHhhCCCceEEEEE------ecCceEEEEEech
Q psy11330 472 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDE 519 (526)
Q Consensus 472 S~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~------~~~~t~f~IKf~~ 519 (526)
+|. .+=.-+.|.+|+|.|+|+...=+-..--+ =++.|+|.|+...
T Consensus 107 -~p~--~~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 107 -LPG--IGEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred -CCC--CCCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEecC
Confidence 233 12235789999999999987544322222 2789999998653
No 15
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=51.49 E-value=29 Score=33.85 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=30.9
Q ss_pred cccchhhHHHHHHHHhhCCCce-EEEEEe--cCceEEEEEe
Q psy11330 480 LNCAIFVAGIVEAVLNNCGFKS-TVTAHW--HKGTTYMIQF 517 (526)
Q Consensus 480 L~y~af~cGIIRGAL~slGf~a-~VTA~~--~~~t~f~IKf 517 (526)
...-.|.+|+++|+|+..|-+. +|.... ...|+|.|.-
T Consensus 137 ~~~p~f~~G~l~~~L~~~Ga~~~~V~~~~~~~~~~~y~i~W 177 (178)
T PF09536_consen 137 FMPPAFHEGVLEAALEAAGARGPRVRVRERGGDDAEYRIRW 177 (178)
T ss_pred CCChHHHHHHHHHHHHHcCCCCCEEEEEecCCCceEEEEEe
Confidence 3456799999999999999994 777665 5789999864
No 16
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=49.22 E-value=23 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=28.5
Q ss_pred ccchhhHHHHHHHHhhCC-CceEEEEEe--cCceEEEEEe
Q psy11330 481 NCAIFVAGIVEAVLNNCG-FKSTVTAHW--HKGTTYMIQF 517 (526)
Q Consensus 481 ~y~af~cGIIRGAL~slG-f~a~VTA~~--~~~t~f~IKf 517 (526)
....|.+|+++|+|+..| -..+|.... ...|+|.|.-
T Consensus 139 ~~~~f~~G~l~~aLe~~Ga~~~~V~~~~~g~~~~~y~i~W 178 (179)
T TIGR02265 139 MPPAYHEGVLHAALRAVGARDVRVRGRAFGGLDATYRLSW 178 (179)
T ss_pred CchHHHHHHHHHHHHHcCCCCCEEEEEecCCCCceEEEEe
Confidence 347899999999999999 334555444 6899999864
No 17
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=48.39 E-value=24 Score=34.57 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHhhhCC-CceEEE--EEecCcEEEEEE
Q psy11330 180 CAIFVAGIVEAVLNNCG-FKSTVT--AHWHKGTTYMIQ 214 (526)
Q Consensus 180 y~af~cGIIrGAL~slG-f~a~VT--A~~~~~t~f~IK 214 (526)
...|.+|+++|+|+..| -..+|. +.-...|+|.|.
T Consensus 140 ~~~f~~G~l~~aLe~~Ga~~~~V~~~~~g~~~~~y~i~ 177 (179)
T TIGR02265 140 PPAYHEGVLHAALRAVGARDVRVRGRAFGGLDATYRLS 177 (179)
T ss_pred chHHHHHHHHHHHHHcCCCCCEEEEEecCCCCceEEEE
Confidence 36799999999999999 334554 444678999885
No 18
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=46.22 E-value=1.7e+02 Score=28.95 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHH-HHHHhhhccCCcccccHHHHHH-------HHHHHHH
Q psy11330 64 DISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL-IDINFYREKNGKREIKLLNILQ-------FVKINLW 135 (526)
Q Consensus 64 eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RL-iE~l~~Re~~~~R~~d~ldiLk-------FIck~~W 135 (526)
=|+++.|.-|+..+=..+ +.+.-..-|.+.|++.|.++ .+++. + ...+..+.+++.. -|.|++|
T Consensus 43 mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp-~--~~q~~Lr~lp~~~~~r~l~~aI~k~aW 114 (188)
T TIGR02019 43 MLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIP-P--PAQRLIRALPAGLAARVLLTAIAKHAW 114 (188)
T ss_pred cCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhh-H--HHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 367777776666554322 22233445666777666666 34432 1 1234444454443 4588999
Q ss_pred HHh-hcCcccccccccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhC-CCceEEEEEe-----cCc
Q psy11330 136 KNI-FGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKG 208 (526)
Q Consensus 136 k~l-FGKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~sl-Gf~a~VTA~~-----~~~ 208 (526)
+.- +|+ +.- ...+--.+-+.++|... ..|. +... ++|-+|+++|.+..+ +=++.|.-.. ++.
T Consensus 115 tf~G~G~----fs~-~~~~~l~i~I~ds~~a~---~~~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~~ 183 (188)
T TIGR02019 115 TFAGSGK----FRY-VSGPPLSFEIARNPVVA---GESS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAPR 183 (188)
T ss_pred hhcccce----EEE-eeCCCeEEEEecChhhh---cCCC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCCc
Confidence 432 111 110 01111112234444321 1122 2333 668999999999754 5666654433 577
Q ss_pred EEEEE
Q psy11330 209 TTYMI 213 (526)
Q Consensus 209 t~f~I 213 (526)
|.|.|
T Consensus 184 C~F~~ 188 (188)
T TIGR02019 184 CRFEL 188 (188)
T ss_pred ceeeC
Confidence 87764
No 19
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=45.04 E-value=33 Score=33.44 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHhhhCCCce-EEEEEe--cCcEEEEEE
Q psy11330 180 CAIFVAGIVEAVLNNCGFKS-TVTAHW--HKGTTYMIQ 214 (526)
Q Consensus 180 y~af~cGIIrGAL~slGf~a-~VTA~~--~~~t~f~IK 214 (526)
.-.|.+|+++|+|...|-+. +|.... ...|+|.|.
T Consensus 139 ~p~f~~G~l~~~L~~~Ga~~~~V~~~~~~~~~~~y~i~ 176 (178)
T PF09536_consen 139 PPAFHEGVLEAALEAAGARGPRVRVRERGGDDAEYRIR 176 (178)
T ss_pred ChHHHHHHHHHHHHHcCCCCCEEEEEecCCCceEEEEE
Confidence 45699999999999999994 776665 468999885
No 20
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=41.00 E-value=1.6e+02 Score=29.18 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=67.3
Q ss_pred cchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHH-HHHHhhhccCCcCcCcHHHHHHH-------HHHHHH
Q psy11330 366 DISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL-IDINFYREKNGKREIKLLNILQF-------VKINLW 437 (526)
Q Consensus 366 eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RL-iE~l~~R~k~~~R~~d~LdiLkF-------Ick~~W 437 (526)
=|+++.|.-|+..|=.. -..+.-..-|.+.|++.|.++ ..++. + ...+..+.+++..+ |.|++|
T Consensus 43 mv~E~~~~aL~~aL~~e-----lG~~aa~~vl~~~G~~ta~y~l~~rIp-~--~~q~~Lr~lp~~~~~r~l~~aI~k~aW 114 (188)
T TIGR02019 43 MLPESQFSTLHRWLRDT-----LGETAAARLLRESGLATADYILANRIP-P--PAQRLIRALPAGLAARVLLTAIAKHAW 114 (188)
T ss_pred cCCHHHHHHHHHHHHHH-----hCHHHHHHHHHHHhHHHHHHHHHHHhh-H--HHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 36777777666654322 222344456777777777777 44432 1 12244445554444 478999
Q ss_pred Hhh-hCCcccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhC-CCceEEEEEe-----cCc
Q psy11330 438 KNI-FGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKG 510 (526)
Q Consensus 438 k~l-FGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~sl-Gf~a~VTA~~-----~~~ 510 (526)
+.- +|+ +. ....+--.+-+.++|... ..|. +... ++|-+|+++|.++.+ +=++.|.-.. ++.
T Consensus 115 tf~G~G~----fs-~~~~~~l~i~I~ds~~a~---~~~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~~ 183 (188)
T TIGR02019 115 TFAGSGK----FR-YVSGPPLSFEIARNPVVA---GESS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAPR 183 (188)
T ss_pred hhcccce----EE-EeeCCCeEEEEecChhhh---cCCC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCCc
Confidence 432 121 11 011111122234444321 1122 2233 668899999999875 5555554433 678
Q ss_pred eEEEE
Q psy11330 511 TTYMI 515 (526)
Q Consensus 511 t~f~I 515 (526)
|.|.|
T Consensus 184 C~F~~ 188 (188)
T TIGR02019 184 CRFEL 188 (188)
T ss_pred ceeeC
Confidence 88864
No 21
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=40.19 E-value=58 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHhhC-CCceEEEEEe-----cCceEEEEE
Q psy11330 482 CAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTYMIQ 516 (526)
Q Consensus 482 y~af~cGIIRGAL~sl-Gf~a~VTA~~-----~~~t~f~IK 516 (526)
-.+|.+|++.|+++.+ |-+..|+=.. ++.|+|.|+
T Consensus 21 ~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 21 VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp --HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence 4579999999999664 5555544222 789999986
No 22
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=35.29 E-value=77 Score=25.15 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=23.7
Q ss_pred chhhHHHHHHHhhhC-CCceEEEEEe-----cCcEEEEEE
Q psy11330 181 AIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTYMIQ 214 (526)
Q Consensus 181 ~af~cGIIrGAL~sl-Gf~a~VTA~~-----~~~t~f~IK 214 (526)
.+|.+|++.|+++.+ |-+.+|+=.. ++.|+|.|+
T Consensus 22 C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 22 CWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp -HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred EHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence 579999999999654 5555554222 688999986
No 23
>KOG0037|consensus
Probab=28.55 E-value=1.9e+02 Score=29.48 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCCccccccccccCcccchHHHHHHHHHHHHHH--HHHccC-------ChhHHHHHHHHhhhhhHHHHHHHHhhhccCCc
Q psy11330 350 PKTSILDKPINTKVKHDISINLYALLFSELVQY--CQNKSL-------SVPEFQSKLHEVGQSIGAKLIDINFYREKNGK 420 (526)
Q Consensus 350 ~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y--~~~~~~-------~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~ 420 (526)
.--+++|++-. .+|+..-|..|+--|=+| +.++.+ +..|+.+.|..|||++-..+.+.+.-|- -
T Consensus 98 lmI~mfd~~~~----G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky---d 170 (221)
T KOG0037|consen 98 LMISMFDRDNS----GTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY---D 170 (221)
T ss_pred HHHHHhcCCCC----CccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh---c
Confidence 33467888664 679999999999988886 344432 3579999999999999999999987542 1
Q ss_pred Cc-CcHHHHHHHHHHHHHHh
Q psy11330 421 RE-IKLLNILQFVKINLWKN 439 (526)
Q Consensus 421 R~-~d~LdiLkFIck~~Wk~ 439 (526)
|. ..-+..-+||.--+|-.
T Consensus 171 ~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 171 RFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred cccCCceeHHHHHHHHHHHH
Confidence 22 33344555664444433
No 24
>PHA03072 putative viral membrane protein; Provisional
Probab=26.02 E-value=17 Score=35.66 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=19.9
Q ss_pred ccCccchhhhccccccc--------------cchhhHHHhh
Q psy11330 285 AVDPSVQTFCRSVSAAN--------------VGYHEYLMDA 311 (526)
Q Consensus 285 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 311 (526)
.||||.|.||..+-..| +||.-|.|+.
T Consensus 139 k~D~sAqQFCey~i~~~~~n~iTCG~~M~n~lGYSGYFe~~ 179 (190)
T PHA03072 139 KVDPSAQQFCEYLIKHKSNNVITCGLEMMNELGYSGYFESS 179 (190)
T ss_pred ccCccHHHHHHHHHHccCCCEEeehHHHHHhcCcceeecCC
Confidence 58999999999876432 5777776653
No 25
>PF06505 XylR_N: Activator of aromatic catabolism; InterPro: IPR010523 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to IPR004096 from INTERPRO.
Probab=25.24 E-value=1.8e+02 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHh
Q psy11330 65 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINF 111 (526)
Q Consensus 65 VS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~ 111 (526)
+..+++..|.-|+|..+ +.+....-|-.+||.-|.|-+|.+.
T Consensus 25 ~~~~alg~LRkELi~~l-----G~~~AR~iltR~Gy~~G~~DAe~~~ 66 (103)
T PF06505_consen 25 MHASALGALRKELIETL-----GEERARGILTRMGYASGWRDAELAR 66 (103)
T ss_pred EchhHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999765 3344556799999999999999984
No 26
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.55 E-value=2e+02 Score=28.43 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcc--CChhHHH------HHHHHhhhhhHH---HHHHHHhhhc
Q psy11330 365 HDISINLYALLFSELVQYCQNKS--LSVPEFQ------SKLHEVGQSIGA---KLIDINFYRE 416 (526)
Q Consensus 365 ~eVS~s~Fa~Lf~EiV~y~~~~~--~~~~eve------~kLe~mGy~VG~---RLiE~l~~R~ 416 (526)
++-...-+-++|..+|.-..+-. ++.+.++ ..||.+||+|+. ||-+++..++
T Consensus 41 REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 41 REGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 56677778889999998766543 2233333 579999999996 8999888775
Done!