Query psy11330
Match_columns 526
No_of_seqs 288 out of 785
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 15:38:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_B ZGC 92866, trafficking 100.0 4.8E-58 1.6E-62 438.1 16.3 183 343-526 1-183 (188)
2 2j3w_B ZGC 92866, trafficking 100.0 4.4E-57 1.5E-61 431.4 17.5 183 46-243 6-188 (188)
3 3cue_B Transport protein parti 100.0 2.5E-49 8.6E-54 395.9 13.0 171 351-526 42-279 (283)
4 3cue_B Transport protein parti 100.0 4.1E-48 1.4E-52 387.1 13.8 172 50-240 43-281 (283)
5 1sz7_A BET3 homolog, trafficki 100.0 4.4E-47 1.5E-51 365.3 15.8 157 362-523 18-182 (200)
6 2c0j_B R32611_2; palmitate; HE 100.0 6.9E-47 2.3E-51 352.9 14.4 148 367-519 3-159 (160)
7 2c0j_B R32611_2; palmitate; HE 100.0 2.3E-46 7.7E-51 349.4 14.8 148 65-217 3-159 (160)
8 1sz7_A BET3 homolog, trafficki 100.0 4.5E-46 1.5E-50 358.3 16.9 156 60-220 18-181 (200)
9 3cue_D Transport protein parti 100.0 1.2E-46 4.1E-51 360.8 12.0 171 343-523 6-186 (193)
10 2bjn_A TPC6, trafficking prote 100.0 1.9E-45 6.5E-50 343.1 14.5 149 366-519 3-159 (160)
11 2bjn_A TPC6, trafficking prote 100.0 5.4E-45 1.8E-49 340.0 14.6 149 64-217 3-159 (160)
12 3cue_D Transport protein parti 100.0 1E-44 3.5E-49 347.4 15.3 155 61-220 21-185 (193)
13 2oso_A Hypothetical protein MJ 83.3 7 0.00024 35.8 10.0 124 365-520 26-160 (163)
14 2oso_A Hypothetical protein MJ 82.2 7.2 0.00025 35.7 9.7 124 63-218 26-160 (163)
15 3tfg_A ALR2278 protein; heme-b 55.3 57 0.002 30.1 9.4 87 420-521 92-185 (189)
16 3sj5_A Methyl-accepting chemot 50.5 1.3E+02 0.0045 27.8 11.0 111 394-521 64-182 (188)
17 3tfg_A ALR2278 protein; heme-b 47.4 1E+02 0.0035 28.4 9.7 86 118-218 92-184 (189)
18 2kii_A Putative uncharacterize 46.1 1.5E+02 0.005 27.2 10.5 38 482-519 138-180 (181)
19 3sj5_A Methyl-accepting chemot 39.1 2.3E+02 0.008 26.0 11.7 112 92-220 64-183 (188)
20 2kii_A Putative uncharacterize 31.5 3E+02 0.01 25.0 11.5 38 180-217 138-180 (181)
21 2vqg_A Uncharacterized protein 25.4 34 0.0011 29.4 2.2 20 481-500 16-35 (99)
No 1
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=4.8e-58 Score=438.09 Aligned_cols=183 Identities=56% Similarity=1.017 Sum_probs=159.6
Q ss_pred ccccccCCCCccccccccccCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCc
Q psy11330 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE 422 (526)
Q Consensus 343 ~~~~~~~~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~ 422 (526)
|..+.+++..+|+||||+ |++++||+|+|+|||+|||+|++++.++++|++++||+|||+||.||+|++++|++..+||
T Consensus 1 ~~~~~~~~~~~i~~~~l~-~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~ 79 (188)
T 2j3w_B 1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRE 79 (188)
T ss_dssp ---------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CCcccCCCCCccccCccc-cchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCccc
Confidence 345567888899999999 8899999999999999999999999999999999999999999999999999999766999
Q ss_pred CcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceE
Q psy11330 423 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKST 502 (526)
Q Consensus 423 ~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~ 502 (526)
++++|+++||||++||++||||+|+|+++|||+|+|||+|+||++++|||+|+++++++|++|+||||||||+++||+|+
T Consensus 80 ~d~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~ 159 (188)
T 2j3w_B 80 TKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAK 159 (188)
T ss_dssp CSHHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEEEechhhhhccC
Q psy11330 503 VTAHWHKGTTYMIQFDEQVIARDK 526 (526)
Q Consensus 503 VTA~~~~~t~f~IKf~~~v~~Re~ 526 (526)
||||++|+|+|+|||+++|++||+
T Consensus 160 Vta~~~~~t~f~Ikf~~~v~~re~ 183 (188)
T 2j3w_B 160 VTVHWHKGTTLMIKFDESVIARDK 183 (188)
T ss_dssp EEEEESSSEEEEEEECHHHHHHHH
T ss_pred EEEEeCCCEEEEEEecHHHHHHHH
Confidence 999999999999999999999985
No 2
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=4.4e-57 Score=431.44 Aligned_cols=183 Identities=54% Similarity=0.961 Sum_probs=163.1
Q ss_pred CCCCCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHH
Q psy11330 46 IQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLN 125 (526)
Q Consensus 46 ~~~~~~i~dr~l~~~~~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ld 125 (526)
+++.++||||||+ |++++||+|+|+|||+|||+|++++.++++|++++|++|||+||.||+|++++|++..+||++++|
T Consensus 6 ~~~~~~i~~~~l~-~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld 84 (188)
T 2j3w_B 6 TRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLN 84 (188)
T ss_dssp ----------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHH
T ss_pred CCCCCccccCccc-cchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHH
Confidence 3478899999998 999999999999999999999999999999999999999999999999999999876699999999
Q ss_pred HHHHHHHHHHHHhhcCcccccccccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEe
Q psy11330 126 ILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW 205 (526)
Q Consensus 126 iLkFIck~~Wk~lFGKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~ 205 (526)
+++||||++|+++||||+|+|+++|||+|+|||+|+||++++|||+|+++++++|++|+||||||||+++||+|+||||+
T Consensus 85 ~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~ 164 (188)
T 2j3w_B 85 ILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW 164 (188)
T ss_dssp HHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeccccchhhHhhHHHHHHHHHhhhhccCC
Q psy11330 206 HKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAG 243 (526)
Q Consensus 206 ~~~t~f~IKf~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 243 (526)
+|+|+|+|||+++ ||+|.+++|++
T Consensus 165 ~~~t~f~Ikf~~~--------------v~~re~~~~~~ 188 (188)
T 2j3w_B 165 HKGTTLMIKFDES--------------VIARDKALDGR 188 (188)
T ss_dssp SSSEEEEEEECHH--------------HHHHHHHTCC-
T ss_pred CCCEEEEEEecHH--------------HHHHHHhhccC
Confidence 9999999999999 99999999853
No 3
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-49 Score=395.89 Aligned_cols=171 Identities=30% Similarity=0.616 Sum_probs=145.7
Q ss_pred CCccccccccccCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccC------------
Q psy11330 351 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKN------------ 418 (526)
Q Consensus 351 ~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~------------ 418 (526)
+.+||||+|+ +++.+||+|+|+|||+|||+|+++++++++|+++||+.|||+||.||+|+|.+|++.
T Consensus 42 ~~~i~~~~l~-~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~ 120 (283)
T 3cue_B 42 PSRIYSESLL-FKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFL 120 (283)
T ss_dssp --------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred CCcccccccc-cCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccc
Confidence 3799999999 788999999999999999999999999999999999999999999999999998651
Q ss_pred -------------------------------------------------CcCcCcHHHHHHHHHHHHHHhhhCCcccccc
Q psy11330 419 -------------------------------------------------GKREIKLLNILQFVKINLWKNIFGKECDKLE 449 (526)
Q Consensus 419 -------------------------------------------------~~R~~d~LdiLkFIck~~Wk~lFGKqaD~Le 449 (526)
.+||+|++|+++||||++||++||||+|+|+
T Consensus 121 ~s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Le 200 (283)
T 3cue_B 121 SQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLV 200 (283)
T ss_dssp --------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhc
Confidence 4899999999999999999999999999997
Q ss_pred cccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe------cCceEEEEEechhhhh
Q psy11330 450 RANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIA 523 (526)
Q Consensus 450 ~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~------~~~t~f~IKf~~~v~~ 523 (526)
++++++|+|||+|++|++++|+++ ++++|++|+||||||||+++||+|+||||+ +++|+|+|||+++|++
T Consensus 201 ktn~~~geYvL~Dn~~pLt~fVs~----~~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~ 276 (283)
T 3cue_B 201 KSSERDNEYMIVDNFPTLTQFIPG----ENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD 276 (283)
T ss_dssp ECSSCSSCEEEEESSCSSSCSSCT----TCCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHH
T ss_pred cccCCCCEEEEEeCchHHHhhhcc----CCcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHh
Confidence 666677999999999999999997 368999999999999999999999999998 3589999999999999
Q ss_pred ccC
Q psy11330 524 RDK 526 (526)
Q Consensus 524 Re~ 526 (526)
||+
T Consensus 277 Re~ 279 (283)
T 3cue_B 277 REG 279 (283)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
No 4
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-48 Score=387.12 Aligned_cols=172 Identities=29% Similarity=0.589 Sum_probs=146.5
Q ss_pred CccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccC-------------
Q psy11330 50 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKN------------- 116 (526)
Q Consensus 50 ~~i~dr~l~~~~~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~------------- 116 (526)
++||||||+ +++.+||+|+|+|||+|||+|+++++++++|+|+||+.|||+||.||+|++.+|+..
T Consensus 43 ~~i~~~~l~-~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~ 121 (283)
T 3cue_B 43 SRIYSESLL-FKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS 121 (283)
T ss_dssp -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred Ccccccccc-cCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence 799999998 888999999999999999999999999999999999999999999999999988641
Q ss_pred ------------------------------------------------CcccccHHHHHHHHHHHHHHHhhcCccccccc
Q psy11330 117 ------------------------------------------------GKREIKLLNILQFVKINLWKNIFGKECDKLER 148 (526)
Q Consensus 117 ------------------------------------------------~~R~~d~ldiLkFIck~~Wk~lFGKqaD~Lek 148 (526)
.+||+|++|+++||||++|+++||||+|+|++
T Consensus 122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek 201 (283)
T 3cue_B 122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK 201 (283)
T ss_dssp -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence 38999999999999999999999999999977
Q ss_pred ccCCCCeEEEEcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEec------CcEEEEEEeccccchh
Q psy11330 149 ANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWH------KGTTYMIQFDEQEGKF 222 (526)
Q Consensus 149 stn~~g~YvI~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~~------~~t~f~IKf~~~~~~~ 222 (526)
+++++|+|||+|++|++++|++++ +++|++|+||||||||+++||+|+||||++ ++|+|+|||+++
T Consensus 202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~---- 273 (283)
T 3cue_B 202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ---- 273 (283)
T ss_dssp CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHH----
T ss_pred ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHH----
Confidence 766779999999999999999973 689999999999999999999999999983 589999999999
Q ss_pred hHhhHHHHHHHHHhhhhc
Q psy11330 223 TALQLQIMEENIASQWRR 240 (526)
Q Consensus 223 t~~~~~~~~~~~~~~~~~ 240 (526)
+|+|.+.|
T Consensus 274 ----------v~~Re~~r 281 (283)
T 3cue_B 274 ----------VLDREGLR 281 (283)
T ss_dssp ----------HHHHHHHC
T ss_pred ----------HHhhhhhh
Confidence 88887765
No 5
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=4.4e-47 Score=365.34 Aligned_cols=157 Identities=18% Similarity=0.291 Sum_probs=144.0
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhh
Q psy11330 362 KVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 441 (526)
Q Consensus 362 ~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lF 441 (526)
+...+||+|+|+|||+|||+|++++.+++++++++|++|||+||.||+|++++|+. .+||++++|+++||||++||++|
T Consensus 18 ~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R~~d~le~l~fI~k~~Wk~lF 96 (200)
T 1sz7_A 18 TESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSN-VGRCHDFRETADVIAKVAFKMYL 96 (200)
T ss_dssp ----CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCHHHHHHHHHHTHHHHHH
T ss_pred cccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccC-CCccCCHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999984 79999999999999999999999
Q ss_pred CCcccccccccCCCCEEEE-EcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe-------cCceEE
Q psy11330 442 GKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-------HKGTTY 513 (526)
Q Consensus 442 GKqaD~Le~stn~~g~YvI-~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~-------~~~t~f 513 (526)
|||+|+|++ ||++|+|+| +|+||+.+ |+|+|++++.++|++|+||||||||+++||+ ||||+ +++|+|
T Consensus 97 gk~ad~L~~-t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~ 172 (200)
T 1sz7_A 97 GITPSITNW-SPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEI 172 (200)
T ss_dssp SCCCEEECC-CTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEE
T ss_pred CCCCcccee-cCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEE
Confidence 999999986 799999999 89999999 9999999999999999999999999999999 66665 368999
Q ss_pred EEEechhhhh
Q psy11330 514 MIQFDEQVIA 523 (526)
Q Consensus 514 ~IKf~~~v~~ 523 (526)
+|||.++|.+
T Consensus 173 ~Ikf~~~v~~ 182 (200)
T 1sz7_A 173 RMRFIRRIED 182 (200)
T ss_dssp EEEEEEEC--
T ss_pred EEEEhhhhhh
Confidence 9999998865
No 6
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=6.9e-47 Score=352.88 Aligned_cols=148 Identities=21% Similarity=0.251 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHHHHHccCC-----hhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhh
Q psy11330 367 ISINLYALLFSELVQYCQNKSLS-----VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 441 (526)
Q Consensus 367 VS~s~Fa~Lf~EiV~y~~~~~~~-----~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lF 441 (526)
||+++|+|||+|||+|++++.++ .++++++||+|||+||.||+|+++ |+. +||+|++|+++||||++|+++|
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~~--~r~~d~ld~l~fI~k~~Wk~~f 79 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RET--LAFREELDVLKFLCKDLWVAVF 79 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GGG--GTTCCHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999874 567799999999999999999998 764 9999999999999999999999
Q ss_pred CCcccccccccCCCCEEEEEcCCcccccceeccCCCC--CcccchhhHHHHHHHHhhCCCceEEEEEe--cCceEEEEEe
Q psy11330 442 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF 517 (526)
Q Consensus 442 GKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~--~L~y~af~cGIIRGAL~slGf~a~VTA~~--~~~t~f~IKf 517 (526)
|||+|+|+ |||+|+|+|+||+|.+++|||+|+++. .++|++|+||||||||+++||+|+||||+ .|+|+|+|||
T Consensus 80 gk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~p~~~f~i~~ 157 (160)
T 2c0j_B 80 QKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 157 (160)
T ss_dssp SSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESSTTCEEEEEEC
T ss_pred CCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCCCceEEEEEe
Confidence 99999998 899999999999999999999999987 89999999999999999999999999999 7999999999
Q ss_pred ch
Q psy11330 518 DE 519 (526)
Q Consensus 518 ~~ 519 (526)
.+
T Consensus 158 ~~ 159 (160)
T 2c0j_B 158 PK 159 (160)
T ss_dssp CC
T ss_pred ec
Confidence 75
No 7
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=2.3e-46 Score=349.40 Aligned_cols=148 Identities=21% Similarity=0.251 Sum_probs=132.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC-----hhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhh
Q psy11330 65 ISINLYALLFSELVQYCQNKSLS-----VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 139 (526)
Q Consensus 65 VS~s~fa~Lf~EiV~y~~~~~~~-----~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lF 139 (526)
||+++|+|||+|||+|++++.++ .++++++||+|||+||.||+|+++ |+. +||++++|+++||||++|+++|
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~~--~r~~d~ld~l~fI~k~~Wk~~f 79 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RET--LAFREELDVLKFLCKDLWVAVF 79 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GGG--GTTCCHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998874 456799999999999999999998 765 9999999999999999999999
Q ss_pred cCcccccccccCCCCeEEEEcCCcccccccccCCCCC--CcccchhhHHHHHHHhhhCCCceEEEEEe--cCcEEEEEEe
Q psy11330 140 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF 215 (526)
Q Consensus 140 GKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~--~L~y~af~cGIIrGAL~slGf~a~VTA~~--~~~t~f~IKf 215 (526)
|||+|+|+ |||+|+|+|+||+|++++|||+|+++. .++|++|+||||||||+++||+|+||||+ .|+|+|+|||
T Consensus 80 gk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~p~~~f~i~~ 157 (160)
T 2c0j_B 80 QKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 157 (160)
T ss_dssp SSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESSTTCEEEEEEC
T ss_pred CCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCCCceEEEEEe
Confidence 99999998 899999999999999999999999988 89999999999999999999999999999 6999999999
Q ss_pred cc
Q psy11330 216 DE 217 (526)
Q Consensus 216 ~~ 217 (526)
.+
T Consensus 158 ~~ 159 (160)
T 2c0j_B 158 PK 159 (160)
T ss_dssp CC
T ss_pred ec
Confidence 76
No 8
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=4.5e-46 Score=358.29 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=143.5
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhh
Q psy11330 60 KVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 139 (526)
Q Consensus 60 ~~~~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lF 139 (526)
+...+||+|+|+|||+|||+|++++++++++++++|++|||+||.||+|++++|+. .+||++++|+++||||++||++|
T Consensus 18 ~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R~~d~le~l~fI~k~~Wk~lF 96 (200)
T 1sz7_A 18 TESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSN-VGRCHDFRETADVIAKVAFKMYL 96 (200)
T ss_dssp ----CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCHHHHHHHHHHTHHHHHH
T ss_pred cccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccC-CCccCCHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999983 69999999999999999999999
Q ss_pred cCcccccccccCCCCeEEE-EcCCcccccccccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEe-------cCcEEE
Q psy11330 140 GKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-------HKGTTY 211 (526)
Q Consensus 140 GKqaD~Lekstn~~g~YvI-~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~-------~~~t~f 211 (526)
|||+|+|++ ||++|+||| +|+||+.+ |||+|++++.++|++|+||||||||+++||+ ||||+ +++|+|
T Consensus 97 gk~ad~L~~-t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~ 172 (200)
T 1sz7_A 97 GITPSITNW-SPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEI 172 (200)
T ss_dssp SCCCEEECC-CTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEE
T ss_pred CCCCcccee-cCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEE
Confidence 999999986 899999999 89999999 9999999999999999999999999999999 66665 367999
Q ss_pred EEEeccccc
Q psy11330 212 MIQFDEQEG 220 (526)
Q Consensus 212 ~IKf~~~~~ 220 (526)
+|||++.+.
T Consensus 173 ~Ikf~~~v~ 181 (200)
T 1sz7_A 173 RMRFIRRIE 181 (200)
T ss_dssp EEEEEEEC-
T ss_pred EEEEhhhhh
Confidence 999999865
No 9
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-46 Score=360.80 Aligned_cols=171 Identities=18% Similarity=0.302 Sum_probs=149.5
Q ss_pred ccccccCCCCccccccccccCcccchHHHHHHHHHHHHH-HHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcC
Q psy11330 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQ-YCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR 421 (526)
Q Consensus 343 ~~~~~~~~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~-y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R 421 (526)
|.+...+.+..+|.. ...+||+|+|+|||+|||+ |++++.++.++++++|++|||+||.||+|++++|+. .+|
T Consensus 6 ~~~~~~~~~~~~~~~-----~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R 79 (193)
T 3cue_D 6 QSRSLKAMGEEIWKN-----KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTA-LPR 79 (193)
T ss_dssp --CHHHHHHHHHHSS-----SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCC
T ss_pred ccccccccchhhhcc-----chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccC-CCc
Confidence 444444455566621 3479999999999999999 666666669999999999999999999999999983 799
Q ss_pred cCcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEE-EcCCcccccceeccCCC-CCcccchhhHHHHHHHHhhCCC
Q psy11330 422 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGF 499 (526)
Q Consensus 422 ~~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI-~DnnPl~~~fVS~P~e~-~~L~y~af~cGIIRGAL~slGf 499 (526)
|++++|+++||||++||++||||+|+|++ |||+|+|+| +|+||+.+ |+|+|+++ +.++|++|+||||||||+++||
T Consensus 80 ~~~~le~l~fI~k~~Wk~lfgk~~d~L~~-t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 80 CENLVKTSEVLSKCAFKIFLNITPNITNW-SHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSCCCCCBCC-CTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCcccee-cCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986 799999999 99999999 99999998 8899999999999999999999
Q ss_pred ceEEEEEe-------cCceEEEEEechhhhh
Q psy11330 500 KSTVTAHW-------HKGTTYMIQFDEQVIA 523 (526)
Q Consensus 500 ~a~VTA~~-------~~~t~f~IKf~~~v~~ 523 (526)
+ ||||+ +++|+|+|||+++|.+
T Consensus 158 ~--Vta~~~~d~l~g~~~t~~~Ikf~~~v~d 186 (193)
T 3cue_D 158 D--CDVWFVSDILRGDSQTEIKVKLNRILKD 186 (193)
T ss_dssp C--CEEEECCCSSSSSSCBCEEEECCCCCSC
T ss_pred E--EEEEEeeccCCCCCCEEEEEEEhhhhhc
Confidence 5 55665 3579999999999865
No 10
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=1.9e-45 Score=343.09 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=126.6
Q ss_pred cchHHHHHHHHHHHHHHHHHccCChh----HHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhh
Q psy11330 366 DISINLYALLFSELVQYCQNKSLSVP----EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 441 (526)
Q Consensus 366 eVS~s~Fa~Lf~EiV~y~~~~~~~~~----eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lF 441 (526)
-||.++|+|||+|||+|++++.++.+ +++++||+|||+||.||+|+++ |++ +||++++|+++||||++|+++|
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~~--~r~~~~ld~lkfI~k~~Wk~~f 79 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KDT--ARFKDELDIMKFICKDFWTTVF 79 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999988764 5799999999999999999998 764 9999999999999999999999
Q ss_pred CCcccccccccCCCCEEEEEcCCcccccceeccCCCC--CcccchhhHHHHHHHHhhCCCceEEEEEe--cCceEEEEEe
Q psy11330 442 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF 517 (526)
Q Consensus 442 GKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~--~L~y~af~cGIIRGAL~slGf~a~VTA~~--~~~t~f~IKf 517 (526)
|||+|+|+ |||+|+|+|+|++|.+++|||+|+++. .++|++|+||||||||+++||+|+||||+ .|.|+|+||+
T Consensus 80 gk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~p~~~F~i~~ 157 (160)
T 2bjn_A 80 KKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 157 (160)
T ss_dssp SSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESSTTCEEEEEEE
T ss_pred CCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCCCceEEEEEe
Confidence 99999998 899999999999999999999999884 89999999999999999999999999999 5999999999
Q ss_pred ch
Q psy11330 518 DE 519 (526)
Q Consensus 518 ~~ 519 (526)
.+
T Consensus 158 ~~ 159 (160)
T 2bjn_A 158 QK 159 (160)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 11
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=5.4e-45 Score=340.04 Aligned_cols=149 Identities=23% Similarity=0.349 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCChh----hHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhh
Q psy11330 64 DISINLYALLFSELVQYCQNKSLSVP----EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 139 (526)
Q Consensus 64 eVS~s~fa~Lf~EiV~y~~~~~~~~~----eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lF 139 (526)
.||.++|+|||+|||+|++++.++.+ +++++|++|||+||.||+|+++ |++ +||++++|+++||||++|+++|
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~~--~r~~~~ld~lkfI~k~~Wk~~f 79 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KDT--ARFKDELDIMKFICKDFWTTVF 79 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999988765 4689999999999999999998 875 9999999999999999999999
Q ss_pred cCcccccccccCCCCeEEEEcCCcccccccccCCCCC--CcccchhhHHHHHHHhhhCCCceEEEEEec--CcEEEEEEe
Q psy11330 140 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHWH--KGTTYMIQF 215 (526)
Q Consensus 140 GKqaD~Lekstn~~g~YvI~DnnPL~~~fIS~P~e~~--~L~y~af~cGIIrGAL~slGf~a~VTA~~~--~~t~f~IKf 215 (526)
|||+|+|+ |||+|+|+|+||+|.+++|||+|+++. .++|++|+||||||||+++||+|+||||+. |.|+|+||+
T Consensus 80 gk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~p~~~F~i~~ 157 (160)
T 2bjn_A 80 KKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 157 (160)
T ss_dssp SSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESSTTCEEEEEEE
T ss_pred CCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCCCceEEEEEe
Confidence 99999998 899999999999999999999999984 899999999999999999999999999994 999999998
Q ss_pred cc
Q psy11330 216 DE 217 (526)
Q Consensus 216 ~~ 217 (526)
.+
T Consensus 158 ~~ 159 (160)
T 2bjn_A 158 QK 159 (160)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 12
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=347.43 Aligned_cols=155 Identities=17% Similarity=0.321 Sum_probs=142.1
Q ss_pred CcccchHHHHHHHHHHHHH-HHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhh
Q psy11330 61 VKHDISINLYALLFSELVQ-YCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 139 (526)
Q Consensus 61 ~~~eVS~s~fa~Lf~EiV~-y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lF 139 (526)
...+||+|+|+|||+|||+ |+++..+++++++++|++|||+||.||+|++++|+ +.+||++++|+++||||++|+++|
T Consensus 21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf 99 (193)
T 3cue_D 21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL 99 (193)
T ss_dssp SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999 66666666999999999999999999999999998 369999999999999999999999
Q ss_pred cCcccccccccCCCCeEEE-EcCCcccccccccCCCC-CCcccchhhHHHHHHHhhhCCCceEEEEEe-------cCcEE
Q psy11330 140 GKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-------HKGTT 210 (526)
Q Consensus 140 GKqaD~Lekstn~~g~YvI-~DnnPL~~~fIS~P~e~-~~L~y~af~cGIIrGAL~slGf~a~VTA~~-------~~~t~ 210 (526)
|||+|+|++ |||+|+|+| +|+||+.+ |+|+|+++ +.++|++|+||||||||+++|| +||||+ +++|+
T Consensus 100 gk~~d~L~~-t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~ 175 (193)
T 3cue_D 100 NITPNITNW-SHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE 175 (193)
T ss_dssp SCCCCCBCC-CTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred CCCCcccee-cCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence 999999986 899999999 99999999 99999999 8899999999999999999999 556665 35799
Q ss_pred EEEEeccccc
Q psy11330 211 YMIQFDEQEG 220 (526)
Q Consensus 211 f~IKf~~~~~ 220 (526)
|+|||++.+.
T Consensus 176 ~~Ikf~~~v~ 185 (193)
T 3cue_D 176 IKVKLNRILK 185 (193)
T ss_dssp EEEECCCCCS
T ss_pred EEEEEhhhhh
Confidence 9999999864
No 13
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=83.26 E-value=7 Score=35.77 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=73.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHh-hhCC
Q psy11330 365 HDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKN-IFGK 443 (526)
Q Consensus 365 ~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~-lFGK 443 (526)
..|..+.|.+|+..|-..+........ |.+.||..|..+.+.+ ++.+ +++|+. =+|.
T Consensus 26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-------------~~~l----~~~~~~~G~G~ 83 (163)
T 2oso_A 26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-------------IEEL----KKIFKLMNFGD 83 (163)
T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-------------HHHH----HHHHHHHTCCE
T ss_pred CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-------------HHHH----HHHHHHcCceE
Confidence 568999999999887766543322222 9999999999886542 2222 455643 2232
Q ss_pred ccccccccc---CCCCEEEE-EcCCcccccceeccCCCCCcccchhhHHHHHHHHhhC-CCceEEEEEe-----cCceEE
Q psy11330 444 ECDKLERAN---DDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTY 513 (526)
Q Consensus 444 qaD~Le~st---n~~g~YvI-~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~sl-Gf~a~VTA~~-----~~~t~f 513 (526)
.+... . ..++.+.+ ..++|.... | .+---++|.+|++.|+|+.+ |=+..|.-.. ++.|.|
T Consensus 84 -l~i~~--~~~~~~~~~~~i~v~~s~e~~~----~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F 153 (163)
T 2oso_A 84 -LEIDE--NKILLKNPPYKIKLSNPPYQWV----S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVF 153 (163)
T ss_dssp -EECCH--HHHHHSCSCEEEEEESCSCTTC----C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEE
T ss_pred -EEEEe--ccccccCCcEEEEEEeCceeec----C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEE
Confidence 12111 1 12234533 466654321 1 22345788899999999875 5444443332 789999
Q ss_pred EEEechh
Q psy11330 514 MIQFDEQ 520 (526)
Q Consensus 514 ~IKf~~~ 520 (526)
.++..+.
T Consensus 154 ~~~~~~~ 160 (163)
T 2oso_A 154 EVKEVDE 160 (163)
T ss_dssp EEEEEC-
T ss_pred EEEEHHH
Confidence 9998764
No 14
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=82.17 E-value=7.2 Score=35.69 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCChhhHhHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHH-hhcC
Q psy11330 63 HDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKN-IFGK 141 (526)
Q Consensus 63 ~eVS~s~fa~Lf~EiV~y~~~~~~~~~eve~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~-lFGK 141 (526)
..|..+.|.+|+-.+-..+........ |.+.||..|..+.+.++ +.+ +++|+. =+|.
T Consensus 26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G~ 83 (163)
T 2oso_A 26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFGD 83 (163)
T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCCE
T ss_pred CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCceE
Confidence 468999999999887765543222211 99999999998865532 211 355554 2222
Q ss_pred ccccccccc---CCCCeEEE-EcCCcccccccccCCCCCCcccchhhHHHHHHHhhhC-CCceEEEEEe-----cCcEEE
Q psy11330 142 ECDKLERAN---DDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTY 211 (526)
Q Consensus 142 qaD~Lekst---n~~g~YvI-~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~sl-Gf~a~VTA~~-----~~~t~f 211 (526)
.+... . ..++.+.| ..++|.... | .+-.-+.|.+|++.|+++.+ |=+..|.-.. ++.|.|
T Consensus 84 -l~i~~--~~~~~~~~~~~i~v~~s~e~~~----~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F 153 (163)
T 2oso_A 84 -LEIDE--NKILLKNPPYKIKLSNPPYQWV----S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVF 153 (163)
T ss_dssp -EECCH--HHHHHSCSCEEEEEESCSCTTC----C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEE
T ss_pred -EEEEe--ccccccCCcEEEEEEeCceeec----C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEE
Confidence 11111 1 12344533 566664431 1 12234788899999999865 5444443332 689999
Q ss_pred EEEeccc
Q psy11330 212 MIQFDEQ 218 (526)
Q Consensus 212 ~IKf~~~ 218 (526)
.++..+.
T Consensus 154 ~~~~~~~ 160 (163)
T 2oso_A 154 EVKEVDE 160 (163)
T ss_dssp EEEEEC-
T ss_pred EEEEHHH
Confidence 9998764
No 15
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=55.34 E-value=57 Score=30.15 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=52.5
Q ss_pred cCcCcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEE--EcCCcccccceeccCCCCCcccchhhHHHHHHHHhhC
Q psy11330 420 KREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL--IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC 497 (526)
Q Consensus 420 ~R~~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI--~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~sl 497 (526)
.-..++|.-+.-|+..+=+.+=+-.+- .|.. .+++-+...|-| |. --++.|..|+|+|+-+..
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~yp~~~~P----------sf~~~~~~~~~l~l~Y~S-~R----~gl~~~~~Gli~~~A~~f 156 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSFPQLRPP----------AFECQHTSSKSMELHYQS-TR----CGLAPMVLGLLHGLGKRF 156 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTCCCC----------EEEEEEEETTEEEEEEEC-SS----SSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHhCCCCCCC----------eEEEEECCCCEEEEEEEC-CC----CCHHHHHHHHHHHHHHHh
Confidence 456677887877877765543221111 2333 233334444554 11 126789999999999986
Q ss_pred CCceEEEEEe-----cCceEEEEEechhh
Q psy11330 498 GFKSTVTAHW-----HKGTTYMIQFDEQV 521 (526)
Q Consensus 498 Gf~a~VTA~~-----~~~t~f~IKf~~~v 521 (526)
|-+++|+-.. .+.++|.|++.+.-
T Consensus 157 ~~~v~i~~~~~~~~~~~h~~f~i~~~~~~ 185 (189)
T 3tfg_A 157 QTKVEVTQTAFRETGEDHDIFSIKYEDSN 185 (189)
T ss_dssp TCEEEEEEEECTTTTSSSEEEEEEEEC--
T ss_pred CCCeEEEEEeccCCCCCeEEEEEEECCCC
Confidence 6666665544 24799999998753
No 16
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=50.47 E-value=1.3e+02 Score=27.80 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred HHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEE--EcCCcccccce
Q psy11330 394 QSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL--IEQESLVNKFI 471 (526)
Q Consensus 394 e~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI--~DnnPl~~~fV 471 (526)
+.-|+.+|...=..+.+.+- +-=...-..++|.-|.-|+..+=+. | -.++ -. .|-+ .+.+-+...|-
T Consensus 64 ~~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~-y----p~~~----~P-sf~~~~~~~~~l~l~Y~ 132 (188)
T 3sj5_A 64 NEIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKM-I----KGAT----PP-RLIAKPVAKDAIEMEYV 132 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTT-S----TTCC----CC-EEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHh-C----CCCC----CC-eEEEEECCCCEEEEEEE
Confidence 34466677665444444421 1001244555666666666664222 2 2221 11 2322 23333444455
Q ss_pred eccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEec------CceEEEEEechhh
Q psy11330 472 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWH------KGTTYMIQFDEQV 521 (526)
Q Consensus 472 S~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~~------~~t~f~IKf~~~v 521 (526)
| .. -++.|+.|+|+||-+..|-+++|+-... ...+|+|+|+...
T Consensus 133 S-----~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~ 182 (188)
T 3sj5_A 133 S-----KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPV 182 (188)
T ss_dssp E-----TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred C-----CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChh
Confidence 5 22 5678999999999999999988775541 2569999998763
No 17
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=47.43 E-value=1e+02 Score=28.43 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=52.4
Q ss_pred cccccHHHHHHHHHHHHHHHhhcCcccccccccCCCCeEEE--EcCCcccccccccCCCCCCcccchhhHHHHHHHhhhC
Q psy11330 118 KREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL--IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC 195 (526)
Q Consensus 118 ~R~~d~ldiLkFIck~~Wk~lFGKqaD~Lekstn~~g~YvI--~DnnPL~~~fIS~P~e~~~L~y~af~cGIIrGAL~sl 195 (526)
.-..++|.-+.-|+..+=+.+=+-.+ =.|.. .+++-+...|.| |+. -++.|..|+|+|+-+..
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~yp~~~~----------Psf~~~~~~~~~l~l~Y~S-~R~----gl~~~~~Gli~~~A~~f 156 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSFPQLRP----------PAFECQHTSSKSMELHYQS-TRC----GLAPMVLGLLHGLGKRF 156 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTCCC----------CEEEEEEEETTEEEEEEEC-SSS----SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHhCCCCCC----------CeEEEEECCCCEEEEEEEC-CCC----CHHHHHHHHHHHHHHHh
Confidence 44667777777777766554322111 12433 233344444555 221 24789999999999986
Q ss_pred CCceEEEEEe-----cCcEEEEEEeccc
Q psy11330 196 GFKSTVTAHW-----HKGTTYMIQFDEQ 218 (526)
Q Consensus 196 Gf~a~VTA~~-----~~~t~f~IKf~~~ 218 (526)
|-+.+|+-.. .+.++|.|+++++
T Consensus 157 ~~~v~i~~~~~~~~~~~h~~f~i~~~~~ 184 (189)
T 3tfg_A 157 QTKVEVTQTAFRETGEDHDIFSIKYEDS 184 (189)
T ss_dssp TCEEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred CCCeEEEEEeccCCCCCeEEEEEEECCC
Confidence 6666666444 2479999999876
No 18
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=46.06 E-value=1.5e+02 Score=27.16 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=31.5
Q ss_pred cchhhHHHHHHHHhhCCCceEEEEEe-----cCceEEEEEech
Q psy11330 482 CAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDE 519 (526)
Q Consensus 482 y~af~cGIIRGAL~slGf~a~VTA~~-----~~~t~f~IKf~~ 519 (526)
+..|..|+|||+-+.+|-+.+|+-.. ...++|.|+|+.
T Consensus 138 l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 138 LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 67899999999999999888887533 357999999864
No 19
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=39.08 E-value=2.3e+02 Score=26.05 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHHhhcCcccccccccCCCCeEEE--EcCCccccccc
Q psy11330 92 QSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL--IEQESLVNKFI 169 (526)
Q Consensus 92 e~rLe~mGy~VG~RLiE~l~~Re~~~~R~~d~ldiLkFIck~~Wk~lFGKqaD~Lekstn~~g~YvI--~DnnPL~~~fI 169 (526)
+.-|+.+|...=..+.+.+- +-=...-..++|.-|.-|+..+=+.+ -.++ .=.|-+ .+++-+...|-
T Consensus 64 ~~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~y-----p~~~-----~Psf~~~~~~~~~l~l~Y~ 132 (188)
T 3sj5_A 64 NEIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKMI-----KGAT-----PPRLIAKPVAKDAIEMEYV 132 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTTS-----TTCC-----CCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHhC-----CCCC-----CCeEEEEECCCCEEEEEEE
Confidence 34466666655444443321 10012344455555555655442222 2221 112322 23333444455
Q ss_pred ccCCCCCCcccchhhHHHHHHHhhhCCCceEEEEEec------CcEEEEEEeccccc
Q psy11330 170 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWH------KGTTYMIQFDEQEG 220 (526)
Q Consensus 170 S~P~e~~~L~y~af~cGIIrGAL~slGf~a~VTA~~~------~~t~f~IKf~~~~~ 220 (526)
| |+ -++.++.|+|+||-+..|-+.+|+-... ...+|+|+|+....
T Consensus 133 S-~R-----gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~ 183 (188)
T 3sj5_A 133 S-KR-----KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF 183 (188)
T ss_dssp E-TT-----CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCS
T ss_pred C-CC-----CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhh
Confidence 5 22 3578999999999999999988875542 25699999998754
No 20
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=31.50 E-value=3e+02 Score=25.02 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHhhhCCCceEEEEEe-----cCcEEEEEEecc
Q psy11330 180 CAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDE 217 (526)
Q Consensus 180 y~af~cGIIrGAL~slGf~a~VTA~~-----~~~t~f~IKf~~ 217 (526)
.+.|..|+|+|+-+.+|-+.+|+-.. ...++|.|+++.
T Consensus 138 l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 138 LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 57899999999999999888888433 256999998864
No 21
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=25.39 E-value=34 Score=29.40 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.8
Q ss_pred ccchhhHHHHHHHHhhCCCc
Q psy11330 481 NCAIFVAGIVEAVLNNCGFK 500 (526)
Q Consensus 481 ~y~af~cGIIRGAL~slGf~ 500 (526)
++.+.-||++||+|...|+.
T Consensus 16 ~~dwv~Cgiv~t~L~~~gl~ 35 (99)
T 2vqg_A 16 QYNWVACGILEGGLKAAGVL 35 (99)
T ss_dssp GGSHHHHHHHHHHHHHTTCC
T ss_pred ccCcccccHHHHHHHHhhcC
Confidence 57788899999999999985
Done!