RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11330
(526 letters)
>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP)
superfamily; Provisional.
Length = 168
Score = 156 bits (397), Expect = 2e-45
Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 367 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 426
+S++ +A LFSE+VQYC +KS + KLHE+G +G KL ++ YREKN KRE K+L
Sbjct: 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60
Query: 427 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 486
+IL F+ ++WK +FG D L ++ D + Y + ++ L+NKFISVPKD G +NCA F
Sbjct: 61 SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119
Query: 487 AGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIARDK 526
AGIVE +L + F + VTAH + TT +I+F +VI R+K
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPEVIEREK 165
Score = 148 bits (375), Expect = 3e-42
Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 7/158 (4%)
Query: 65 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 124
+S++ +A LFSE+VQYC +KS + KLHE+G +G KL ++ YREKN KRE K+L
Sbjct: 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60
Query: 125 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 184
+IL F+ ++WK +FG D L ++ D + Y + ++ L+NKFISVPKD G +NCA F
Sbjct: 61 SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119
Query: 185 AGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFD 216
AGIVE +L + F + VTAH + TT +I+F
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFY 157
>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component.
TRAPP plays a key role in the targeting and/or fusion of
ER-to-Golgi transport vesicles with their acceptor
compartment. TRAPP is a large multimeric protein that
contains at least 10 subunits. This family contains many
TRAPP family proteins. The Bet3 subunit is one of the
better characterized TRAPP proteins and has a dimeric
structure with hydrophobic channels. The channel
entrances are located on a putative membrane-interacting
surface that is distinctively flat, wide and decorated
with positively charged residues. Bet3 is proposed to
localise TRAPP to the Golgi.
Length = 148
Score = 154 bits (392), Expect = 8e-45
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 10/154 (6%)
Query: 69 LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQ 128
L+ALL+ ELV Y + ++L ++G +IG +LI+ R KR LL +L+
Sbjct: 1 LFALLYGELVSYLLRDV---EDVNARLEKMGYNIGQRLIERLLARS-GSKRCTDLLEVLK 56
Query: 129 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 188
F+ +LWK +FGK+ D LE ++D E Y LI+ ++ +++F+ +P D LN F+ GI+
Sbjct: 57 FICKDLWKMLFGKQADVLETSHDGE--YVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114
Query: 189 EAVLNNCGFKSTVTAH----WHKGTTYMIQFDEQ 218
L++ GF + VTAH GT + I+F++
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148
Score = 154 bits (392), Expect = 8e-45
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 10/154 (6%)
Query: 371 LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQ 430
L+ALL+ ELV Y + ++L ++G +IG +LI+ R KR LL +L+
Sbjct: 1 LFALLYGELVSYLLRDV---EDVNARLEKMGYNIGQRLIERLLARS-GSKRCTDLLEVLK 56
Query: 431 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 490
F+ +LWK +FGK+ D LE ++D E Y LI+ ++ +++F+ +P D LN F+ GI+
Sbjct: 57 FICKDLWKMLFGKQADVLETSHDGE--YVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114
Query: 491 EAVLNNCGFKSTVTAH----WHKGTTYMIQFDEQ 520
L++ GF + VTAH GT + I+F++
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148
>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex
subunit [Intracellular trafficking and secretion].
Length = 208
Score = 142 bits (359), Expect = 1e-39
Identities = 56/168 (33%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 423
K ++ ++ A LF E+++Y + + +F++KL +G +G KL+++ +R +N KRE+
Sbjct: 37 KREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREV 96
Query: 424 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 483
++L ILQ + +LW +FG D+LE++ + +R Y +++ + L+++FISVP + L+C
Sbjct: 97 RILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCD 156
Query: 484 IFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 525
V GI++ L GF VTAH T ++I+ D+ VIAR+
Sbjct: 157 SIVCGIIQGFLMAAGFPCEVTAHPEPSENLPNRTVFLIRIDDLVIARE 204
Score = 135 bits (340), Expect = 8e-37
Identities = 52/163 (31%), Positives = 97/163 (59%), Gaps = 6/163 (3%)
Query: 62 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 121
K ++ ++ A LF E+++Y + + +F++KL +G +G KL+++ +R +N KRE+
Sbjct: 37 KREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREV 96
Query: 122 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 181
++L ILQ + +LW +FG D+LE++ + +R Y +++ + L+++FISVP + L+C
Sbjct: 97 RILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCD 156
Query: 182 IFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 218
V GI++ L GF VTAH T ++I+ D+
Sbjct: 157 SIVCGIIQGFLMAAGFPCEVTAHPEPSENLPNRTVFLIRIDDL 199
>gnl|CDD|187764 cd09324, TDT_TehA, Tellurite-resistance/Dicarboxylate Transporter
(TDT) family includes TehA protein. This subfamily
includes Tellurite resistance protein TehA that belongs
to the C4-dicarboxylate transporter/malic acid transport
(TDT) protein family and is a homolog of plant Slow
Anion Channel-Associated 1 (SLAC1). The tehA gene
encodes an integral membrane protein that has been shown
to have efflux activity of quaternary ammonium
compounds. TehA protein of Escherichia coli functions as
a tellurite-resistance uptake permease.
Length = 301
Score = 33.0 bits (76), Expect = 0.37
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 288 PSVQT-FCRSVSAANVGYHEYLMDALGKEPLGGIISWLVL 326
P+V F + + A +GYH+ M G G+ SWL L
Sbjct: 135 PTVAGNFVSASALAALGYHDLGMLFFG----AGMFSWLSL 170
>gnl|CDD|217478 pfam03294, Pox_Rap94, RNA polymerase-associated transcription
specificity factor, Rap94.
Length = 796
Score = 32.0 bits (73), Expect = 0.90
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 326 LFQIIDLTMNSATNTAGISI-SIIQPK---------TSILDKPINTKVKHDISINLYALL 375
L+ I+ ++ T ISI S I K +S L + D++ NLY L
Sbjct: 58 LYATIEQNPDADDQTL-ISIFSYIGYKFEQNVKEEISSSLSIKEKNSITDDMTYNLYNLF 116
Query: 376 FSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIK-----LLNILQ 430
F+ L Y + K ++V + +I + D+ E + EI+ + ++L
Sbjct: 117 FNTLDMYLRQKRINVLVNDDLNGDN--NINYRTSDLTTNFEPASEPEIREIPFNMKDLLS 174
Query: 431 FVKINLWKNIFGK 443
+V NL + F K
Sbjct: 175 YVSKNLDQLRFSK 187
Score = 29.7 bits (67), Expect = 4.2
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 50 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDI 109
+S L + D++ NLY L F+ L Y + K ++V + +I + D+
Sbjct: 93 SSSLSIKEKNSITDDMTYNLYNLFFNTLDMYLRQKRINVLVNDDLNGDN--NINYRTSDL 150
Query: 110 NFYREKNGKREIK-----LLNILQFVKINLWKNIFGK 141
E + EI+ + ++L +V NL + F K
Sbjct: 151 TTNFEPASEPEIREIPFNMKDLLSYVSKNLDQLRFSK 187
>gnl|CDD|219403 pfam07409, GP46, Phage protein GP46. This family contains GP46
phage proteins (approximately 120 residues long).
Length = 115
Score = 30.0 bits (68), Expect = 0.93
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 15 QALVWLIDD-ACEIIDLT-MNSATNTAGISISIIQPKTSIL 53
+AL WLIDD ID+T N +++++ P S L
Sbjct: 67 EALQWLIDDGVATAIDVTAERPGINRLALTVTLTLPDGSTL 107
>gnl|CDD|187762 cd09322, TDT_TehA_like, The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family includes TehA proteins. The
Tellurite-resistance/Dicarboxylate Transporter (TDT)
family includes members from all three kingdoms, but
only three members of the family have been functionally
characterized: the TehA protein of E. coli functioning
as a tellurite-resistance uptake permease, the Mae1
protein of S. pombe functioning in the uptake of malate
and other dicarboxylates, and the sulfite efflux pump
(SSU1) of Saccharomyces cerevisiae. In plants, the
plasma membrane protein SLAC1 (Slow Anion
Channel-Associated 1), which is preferentially expressed
in guard cells, encodes a distant homolog of fungal and
bacterial dicarboxylate/malic acid transport proteins.
SLAC1 is essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane a-helical
spanners (TMSs).
Length = 289
Score = 28.3 bits (64), Expect = 8.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 296 SVSAANVGYHEYLMDALGKEPLGGIISWLVLFQII 330
V+ +G E G G+I WLVL ++
Sbjct: 140 PVTGPALGGPELGWFFFG----VGLIFWLVLLPLV 170
>gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein
(PQQ-dependent type I alcohol dehydrogenase). This
bacterial family of homodimeric ethanol dehydrogenases
utilize pyrroloquinoline quinone (PQQ) as a cofactor. It
represents proteins whose expression may be induced by
ethanol, and which are similar to quinoprotein methanol
dehydrogenases, but have higher specificities for
ethanol and other primary and secondary alcohols.
Dehydrogenases with PQQ cofactors, such as ethanol,
methanol, and membrane-bound glucose dehydrogenases,
form an 8-bladed beta-propeller.
Length = 529
Score = 28.4 bits (64), Expect = 9.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 115 KNG------KREIKLLNILQFVKINLWKNIFGKEC 143
+NG + KL+ FVK W +I K
Sbjct: 301 RNGFFYVLDRTNGKLIWATPFVKKITWASIDLKTG 335
Score = 28.4 bits (64), Expect = 9.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 417 KNG------KREIKLLNILQFVKINLWKNIFGKEC 445
+NG + KL+ FVK W +I K
Sbjct: 301 RNGFFYVLDRTNGKLIWATPFVKKITWASIDLKTG 335
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,706,146
Number of extensions: 2445520
Number of successful extensions: 1771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 19
Length of query: 526
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 425
Effective length of database: 6,457,848
Effective search space: 2744585400
Effective search space used: 2744585400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)