RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11330
(526 letters)
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2;
multisubunit tethering factor, trapp, palmitate,
transport, lipoprotein; HET: PLM; 2.1A {Brachydanio
rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Length = 188
Score = 213 bits (544), Expect = 5e-67
Identities = 103/184 (55%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
Query: 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 402
+ + + K++IL++ + + K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ
Sbjct: 1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 403 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 462
+GA L+D+ REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 463 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 522
+E L+N +ISVPK+ +LNCA F GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179
Query: 523 ARDK 526
ARDK
Sbjct: 180 ARDK 183
Score = 203 bits (518), Expect = 4e-63
Identities = 97/178 (54%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Query: 41 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 100
+ + + K++IL++ + + K ++S++ +ALLFSE+VQYCQ++ SV E Q++L ++GQ
Sbjct: 1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 101 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 160
+GA L+D+ REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 161 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 218
+E L+N +ISVPK+ +LNCA F GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDES 177
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 159 bits (402), Expect = 4e-45
Identities = 59/286 (20%), Positives = 103/286 (36%), Gaps = 34/286 (11%)
Query: 258 SSYPVVNSSTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPL 317
S S VG K S S + + S+ E + A+
Sbjct: 11 SDQQFPGKSDGYEYTVGPKQAITSEASTTYIPSRIYSESLLF---KRQEASLSAMA---- 63
Query: 318 GGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSI------LDKPINTKVKHDISINL 371
+ ++I + + +I L + +
Sbjct: 64 ------FLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRAS 117
Query: 372 YALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLI-----DINFYREKNGKREIKLL 426
L +E N S S + S +L ++ Y K +R++K+L
Sbjct: 118 AFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKIL 177
Query: 427 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 486
+ILQF+ LW +F D L ++++ + Y +++ + +FI +++C FV
Sbjct: 178 DILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFV 233
Query: 487 AGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARDK 526
GI++ L N GF VTAH + T Y+IQFD QV+ R+
Sbjct: 234 CGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDREG 279
Score = 151 bits (382), Expect = 3e-42
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 24/222 (10%)
Query: 14 LQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSI------LDKPINTKVKHDISI 67
L A+ +L E+I + + +I L + +
Sbjct: 59 LSAMAFL---FQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPR 115
Query: 68 NLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLI-----DINFYREKNGKREIK 122
L +E N S S + S +L ++ Y K +R++K
Sbjct: 116 ASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLK 175
Query: 123 LLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAI 182
+L+ILQF+ LW +F D L ++++ + Y +++ + +FI +++C
Sbjct: 176 ILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE----NVSCEY 231
Query: 183 FVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 218
FV GI++ L N GF VTAH + T Y+IQFD Q
Sbjct: 232 FVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3;
alpha-beta plait, trapp complex, palmitoylated,
transport PR; HET: PLM; 1.55A {Homo sapiens} PDB:
2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A*
1wc9_A* 2c0j_A*
Length = 200
Score = 150 bits (380), Expect = 6e-43
Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 12/187 (6%)
Query: 350 PKTSILDKPINTKVKHD-ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 408
+ N + +S L+ L + LV + + +L ++G +IG +L
Sbjct: 5 HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64
Query: 409 IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 468
I+ R N R + +K G + + ++E LV+
Sbjct: 65 IEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123
Query: 469 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT--AHWHKG-------TTYMIQFDE 519
F+ +P + SL + + G++ L KG ++ + ++
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 182
Query: 520 QVIARDK 526
+ A ++
Sbjct: 183 NLPAGEE 189
Score = 148 bits (374), Expect = 5e-42
Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 8/177 (4%)
Query: 48 PKTSILDKPINTKVKHD-ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 106
+ N + +S L+ L + LV + + +L ++G +IG +L
Sbjct: 5 HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64
Query: 107 IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 166
I+ R N R + +K G + + ++E LV+
Sbjct: 65 IEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123
Query: 167 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH-----WHKGTTYMIQFDEQ 218
F+ +P + SL + + G++ L T ++F +
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRR 179
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp
complex, tethering, transport protein; 1.7A {Homo
sapiens} PDB: 3kxc_C* 2cfh_C*
Length = 160
Score = 133 bits (336), Expect = 5e-37
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
Query: 64 DISINLYALLFSELVQYCQNKS----LSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR 119
L+ LL +E+V + + +KL +G +G LI+ K+ R
Sbjct: 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIE---RFTKDTAR 59
Query: 120 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLN 179
L+I++F+ + W +F K+ D L + Y L + + + +S K
Sbjct: 60 FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQG--IYVLQDNKFRLLTQMSAGKQYLEHA 117
Query: 180 CAI--FVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 217
F G++ L+N G KS VTA + + +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 159
Score = 133 bits (336), Expect = 5e-37
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
Query: 366 DISINLYALLFSELVQYCQNKS----LSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR 421
L+ LL +E+V + + +KL +G +G LI+ K+ R
Sbjct: 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIE---RFTKDTAR 59
Query: 422 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLN 481
L+I++F+ + W +F K+ D L + Y L + + + +S K
Sbjct: 60 FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQG--IYVLQDNKFRLLTQMSAGKQYLEHA 117
Query: 482 CAI--FVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 519
F G++ L+N G KS VTA + + +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 159
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Length = 160
Score = 125 bits (314), Expect = 7e-34
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 65 ISINLYALLFSELVQYCQNKSLSVPEFQ-----SKLHEVGQSIGAKLIDINFYREKNGKR 119
L+ L +E+V S L +G +G L + RE R
Sbjct: 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGER-LPRETLAFR 61
Query: 120 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD--KGS 177
E L++L+F+ +LW +F K+ D L + TY L + + ++ + +
Sbjct: 62 EE--LDVLKFLCKDLWVAVFQKQMDSLRTNHQG--TYVLQDNSFPLLLPMASGLQYLEEA 117
Query: 178 LNCAIFVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 217
F G++ L G +S VTA + + +
Sbjct: 118 PKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 159
Score = 125 bits (314), Expect = 7e-34
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 367 ISINLYALLFSELVQYCQNKSLSVPEFQ-----SKLHEVGQSIGAKLIDINFYREKNGKR 421
L+ L +E+V S L +G +G L + RE R
Sbjct: 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGER-LPRETLAFR 61
Query: 422 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD--KGS 479
E L++L+F+ +LW +F K+ D L + TY L + + ++ + +
Sbjct: 62 EE--LDVLKFLCKDLWVAVFQKQMDSLRTNHQG--TYVLQDNSFPLLLPMASGLQYLEEA 117
Query: 480 LNCAIFVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 519
F G++ L G +S VTA + + +
Sbjct: 118 PKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 4e-12
Identities = 68/501 (13%), Positives = 142/501 (28%), Gaps = 146/501 (29%)
Query: 107 IDINFYREKNGKREIKLLNILQFVK-------INLWKNIFGK-ECDK-LERANDDERTYY 157
+D + ++I + FV ++ K+I K E D + + T
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 158 LI-----EQESLVNKFI--SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTT 210
L +QE +V KF+ + + L I + + + ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQV 125
Query: 211 YMIQFDEQEGKFTALQ--LQIM--EENIASQWRRGAGK----VERGACKDM-TKKNSSYP 261
+ + + L+ L + +N+ G+GK ++ C + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDFK 183
Query: 262 V--VN----SSTEDMIQVGEK---DGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDAL 312
+ +N +S E ++++ +K + S D S R S L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKP 242
Query: 313 GKEPLGGIISWLVL-----------F----QIIDLTMNSATNTAGISISIIQPKTSILDK 357
+ L LVL F +I+ T + D
Sbjct: 243 YENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFK----------------QVTDF 280
Query: 358 PINTKVKHDISINLYALLFSE------LVQYCQNKSLSVPEFQSKLHEVGQS-IGAKLID 410
H IS++ +++ + L++Y + +P + S I + D
Sbjct: 281 LSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 411 ----INFYREKNGKREIKLLNILQ-FVKINLWKNIFGKECDKLERANDDERTYYLIEQES 465
+ ++ N KL I++ + + LE + R +
Sbjct: 340 GLATWDNWKHVNCD---KLTTIIESSL-------------NVLE--PAEYRKMF------ 375
Query: 466 LVNKFISVPKDKGSLNCAIFVAGI------------------VEAVLNNCGFKSTVTAHW 507
++F V V+N S V
Sbjct: 376 --------------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 508 HKGTT--YMIQFDEQVIARDK 526
+ T I + +V ++
Sbjct: 422 KESTISIPSIYLELKVKLENE 442
Score = 53.3 bits (127), Expect = 1e-07
Identities = 33/268 (12%), Positives = 67/268 (25%), Gaps = 96/268 (35%)
Query: 4 DNVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKH 63
NV A + +C+I+ T + D H
Sbjct: 251 LNVQNA--KAWNAF----NLSCKILLTTRFK----------------QVTDFLSAATTTH 288
Query: 64 DISINLYALLFSE------LVQYCQNKSLSVPEFQSKLHEVGQS-IGAKLID----INFY 112
IS++ +++ + L++Y + +P + S I + D + +
Sbjct: 289 -ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 113 REKNGKREIKLLNILQ-FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 171
+ N KL I++ + + LE + R +
Sbjct: 348 KHVNCD---KLTTIIESSL-------------NVLE--PAEYRKMF-------------- 375
Query: 172 PKDKGSLNCAIFVAGI------------------VEAVLNNCGFKSTVTAHWHKGTT--Y 211
++F V V+N S V + T
Sbjct: 376 ------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 212 MIQFDEQEGKFTALQLQIMEENIASQWR 239
I + K + +I +
Sbjct: 430 SIYLEL---KVKLENEYALHRSIVDHYN 454
Score = 51.4 bits (122), Expect = 7e-07
Identities = 88/602 (14%), Positives = 158/602 (26%), Gaps = 184/602 (30%)
Query: 14 LQALVWLIDDACEIIDLTMNSATNTAGISISIIQPK---------TSILDKPINTK---V 61
A V D C+ + S + I I+ ++L K V
Sbjct: 26 EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 62 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKN----- 116
+ + IN Y L S + + S+ + + + + N R +
Sbjct: 84 EEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 117 --------------------GK--------REIKLLNILQFVKINLWKNIFGKECDKLER 148
GK K+ + F KI W N
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KI-FWLN-LKNCNSPETV 198
Query: 149 ANDDERTYYLIEQE--SLVNKFISVPKDKGSL--------------NCAIFV-----AGI 187
++ Y I+ S + ++ S+ NC + + A
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 188 VEAVLNNCGFK-------STVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQW-R 239
A +C K VT TT I D T ++ +++ ++
Sbjct: 259 WNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLD 312
Query: 240 RGAGKVERGACKDMTKKNSSYPVVNSSTEDMIQVGE--KDGA-------KSGNSAVDPSV 290
+ R + P S +I E +DG + +
Sbjct: 313 CRPQDLPREVLT-------TNPRRLS----II--AESIRDGLATWDNWKHVNCDKLTTII 359
Query: 291 QTFCRSVSAANVGYHEYLMDALG------KEPLGGI-ISWL-VLFQIIDLTMNSATNTAG 342
++ + A Y + L P + + W V+ + + +N
Sbjct: 360 ESSLNVLEPAE--YRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-- 414
Query: 343 ISISIIQPKT---SILD-------KPINTKVKHDISINLYALLFSELVQYCQNKSLSVP- 391
S+ QPK SI K N H ++ Y + + + L P
Sbjct: 415 -SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP----KTFDSDD-LIPPY 468
Query: 392 -----------------------EF----------QSKLHEVGQSIGAK------LIDIN 412
F + K+ + A L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 413 FYR----EKNGKREIKLLNILQFVKINLWKNIF-GKECDKLERANDDERTYYLIEQESLV 467
FY+ + + K E + IL F+ + +N+ K D L A E E V
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 468 NK 469
+
Sbjct: 588 QR 589
Score = 44.1 bits (103), Expect = 1e-04
Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 75/223 (33%)
Query: 4 DNVW--TQLYNTLQALVW--LIDDACEIIDLTMNSATNTAGISISIIQPKT---SILD-- 54
+ T L + W +I ++ +N S+ QPK SI
Sbjct: 383 PSAHIPTI---LLSLI-WFDVIKSDVMVV---VNKLHKY---SLVEKQPKESTISIPSIY 432
Query: 55 -----KPINTKVKHDISINLYALLFSELVQYCQNKSLSVP-------------------- 89
K N H ++ Y + + + L P
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIP----KTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 90 ----EF----------QSKLHEVGQSIGAK------LIDINFYR----EKNGKREIKLLN 125
F + K+ + A L + FY+ + + K E +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 126 ILQFVKINLWKNIF-GKECDKLERANDDERTYYLIEQESLVNK 167
IL F+ + +N+ K D L A E E V +
Sbjct: 548 ILDFLP-KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 73/427 (17%), Positives = 121/427 (28%), Gaps = 192/427 (44%)
Query: 1 MAADNVWTQLYNTLQA--LVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPIN 58
M D LY T +A VW + A +T G SI I +++ P+N
Sbjct: 1631 MGMD-----LYKTSKAAQDVW--NRADN-------HFKDTYGFSILDI-----VINNPVN 1671
Query: 59 TKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGK 118
+ F E G+ I + F E
Sbjct: 1672 LTI-----------HFGG--------------------EKGKRIRENYSAMIF--ETIVD 1698
Query: 119 REIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYY------LIEQ---ESLVNKFI 169
++K I + + + F E L T + L+E+ E L
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSA------TQFTQPALTLMEKAAFEDL----- 1747
Query: 170 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHK-GTTYMIQFDEQEGKFTALQLQ 228
K KG + AG H G E + AL
Sbjct: 1748 ---KSKGLIPADATFAG-------------------HSLG--------E----YAAL--- 1770
Query: 229 IMEENIASQWRRGAG--------KV--ERGACKDMTKKNSSYPVVNSSTEDMIQVGEKDG 278
AS A +V RG + + + E
Sbjct: 1771 ------ASL----ADVMSIESLVEVVFYRG----------------MTMQVAVPRDELGR 1804
Query: 279 AKSGNSAVDPS--VQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNS 336
+ G A++P +F + +Y+++ +GK WLV +I+ N
Sbjct: 1805 SNYGMIAINPGRVAASFSQEAL-------QYVVERVGKR-----TGWLV--EIV----NY 1846
Query: 337 ATNTAG----IS--ISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSV 390
N + + + T++L+ K++ I++ L KSLS+
Sbjct: 1847 --NVENQQYVAAGDLRALDTVTNVLNF---IKLQ---KIDIIEL----------QKSLSL 1888
Query: 391 PEFQSKL 397
E + L
Sbjct: 1889 EEVEGHL 1895
Score = 31.9 bits (72), Expect = 0.59
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 34/125 (27%)
Query: 376 FS--ELVQYCQN-KSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFV 432
FS ++V N +L++ F E G+ I + F E ++K I + +
Sbjct: 1659 FSILDIVI--NNPVNLTI-HFGG---EKGKRIRENYSAMIF--ETIVDGKLKTEKIFKEI 1710
Query: 433 KINLWKNIFGKECDKLERANDDERTYY------LIEQ---ESLVNKFISVPKDKGSLNCA 483
+ F E L T + L+E+ E L K KG +
Sbjct: 1711 NEHSTSYTFRSEKGLLSA------TQFTQPALTLMEKAAFEDL--------KSKGLIPAD 1756
Query: 484 IFVAG 488
AG
Sbjct: 1757 ATFAG 1761
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 193
Score = 42.3 bits (99), Expect = 1e-04
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 65 ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKL 123
I+ L+ L + +V Q CQ+ + L+ +G +IG +LI+ +F R L
Sbjct: 25 INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIE-DFLARTALPRCENL 83
Query: 124 LNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD-KGSLNCAI 182
+ + + +K + + + ++ T+ LI E+ + F+ +P D SL +
Sbjct: 84 VKTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSN 142
Query: 183 FVAGIVEAVLNNCGFKSTVT 202
+ G+++ L V
Sbjct: 143 ILCGVLKGSLEMVQLDCDVW 162
Score = 42.3 bits (99), Expect = 1e-04
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 367 ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKL 425
I+ L+ L + +V Q CQ+ + L+ +G +IG +LI+ +F R L
Sbjct: 25 INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIE-DFLARTALPRCENL 83
Query: 426 LNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD-KGSLNCAI 484
+ + + +K + + + ++ T+ LI E+ + F+ +P D SL +
Sbjct: 84 VKTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSN 142
Query: 485 FVAGIVEAVLNNCGFKSTVT 504
+ G+++ L V
Sbjct: 143 ILCGVLKGSLEMVQLDCDVW 162
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 31.3 bits (72), Expect = 1.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 488 GIVEAVLNNCGFKSTVTA----HWHKGTTYMIQFDEQVIA 523
G +EA+ G V A H G + + + + +
Sbjct: 611 GYLEALFARLGLAFRVEAQAFPFLHPGVSGRVLVEGEEVG 650
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 29.4 bits (67), Expect = 3.5
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 486 VAGIVEAVLNNCGFKSTVT------AHWHKGTTYMIQFDEQVIA 523
+ G +E+VL+ G + V H G + I + I
Sbjct: 617 LKGDLESVLDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIG 660
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 29.4 bits (67), Expect = 3.6
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 488 GIVEAVLNNCGFKSTVTA----HWHKGTTYMIQFDEQVI 522
G+V+ V + + A H G T ++ + Q I
Sbjct: 623 GVVDRVAEKLNLEFSYKAGKIEGLHPGRTAIVSLEGQDI 661
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 27.2 bits (61), Expect = 9.0
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 144 DKLERANDDERTYYLIEQESLVNKFI 169
K+ N ++ S + +
Sbjct: 140 AKVTDENRTPGLLRSLDVVSFLGPCL 165
Score = 27.2 bits (61), Expect = 9.0
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 446 DKLERANDDERTYYLIEQESLVNKFI 471
K+ N ++ S + +
Sbjct: 140 AKVTDENRTPGLLRSLDVVSFLGPCL 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,631,703
Number of extensions: 439265
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 26
Length of query: 526
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 428
Effective length of database: 3,965,535
Effective search space: 1697248980
Effective search space used: 1697248980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)