RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11330
         (526 letters)



>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
           protein particle complex 5 {Zebrafish (Brachydanio
           rerio) [TaxId: 7955]}
          Length = 168

 Score =  200 bits (510), Expect = 1e-62
 Identities = 100/163 (61%), Positives = 133/163 (81%)

Query: 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 423
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 424 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 483
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 484 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 526
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE VIARDK
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDK 163



 Score =  190 bits (484), Expect = 9e-59
 Identities = 94/157 (59%), Positives = 127/157 (80%)

Query: 62  KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 121
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 122 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 181
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 182 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 218
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE 
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDES 157


>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
           3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 161

 Score =  132 bits (335), Expect = 3e-37
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 367 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 426
           +S  L+ L +  LV        +  +   +L  +G +IG +LI+ +F    N  R     
Sbjct: 3   MSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIE-DFLARSNVGRCHDFR 61

Query: 427 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 486
                +    +K   G         +     + LI + + +  F+ +P +  +L  +  +
Sbjct: 62  ETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 487 AGIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQV 521
            G++   L                     T   ++F  ++
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 160



 Score =  131 bits (332), Expect = 7e-37
 Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 65  ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 124
           +S  L+ L +  LV        +  +   +L  +G +IG +LI+ +F    N  R     
Sbjct: 3   MSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIE-DFLARSNVGRCHDFR 61

Query: 125 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 184
                +    +K   G         +     + LI + + +  F+ +P +  +L  +  +
Sbjct: 62  ETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 185 AGIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQ 218
            G++   L                     T   ++F  +
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRR 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,870,658
Number of extensions: 83769
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 5
Length of query: 526
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 437
Effective length of database: 1,185,626
Effective search space: 518118562
Effective search space used: 518118562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)