Query psy11331
Match_columns 780
No_of_seqs 95 out of 97
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 15:39:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05281 Secretogranin_V: Neur 100.0 2.6E-64 5.5E-69 486.9 9.2 158 220-396 1-163 (208)
2 PF05281 Secretogranin_V: Neur 100.0 1.1E-59 2.4E-64 454.7 7.9 127 647-773 58-206 (208)
3 KOG4187|consensus 100.0 1.6E-46 3.5E-51 362.2 4.6 130 646-776 67-227 (228)
4 KOG4187|consensus 100.0 2.3E-44 4.9E-49 347.4 7.6 146 250-409 37-195 (228)
5 PF09064 Tme5_EGF_like: Thromb 45.1 14 0.0003 29.0 1.5 20 326-345 7-30 (34)
6 PF14625 Lustrin_cystein: Lust 35.6 28 0.0006 26.4 1.9 20 678-697 11-30 (45)
7 PF14625 Lustrin_cystein: Lust 35.3 23 0.00051 26.8 1.5 19 324-342 12-30 (45)
8 KOG4389|consensus 24.3 29 0.00063 40.0 0.5 43 587-629 135-181 (601)
9 smart00289 WR1 Worm-specific r 20.6 62 0.0013 23.4 1.4 18 325-342 10-27 (38)
10 KOG4211|consensus 14.8 73 0.0016 36.5 0.9 23 443-465 110-132 (510)
No 1
>PF05281 Secretogranin_V: Neuroendocrine protein 7B2 precursor (Secretogranin V); InterPro: IPR007945 Mature peptide hormones and neuropeptides are typically synthesised from much larger precursors and require several post-translational processing steps--including proteolytic cleavage--for the formation of the bioactive species. The subtilisin-related proteolytic enzymes that accomplish neuroendocrine-specific cleavages are known as prohormone convertases 1 and 2 (PC1 and PC2), which belong to MEROPS peptidase family S8B. The cell biology of these proteases within the regulated secretory pathway of neuroendocrine cells is complex, and they are themselves initially synthesised as inactive precursor molecules. ProPC1 propeptide cleavage occurs rapidly in the endoplasmic reticulum, yet its major site of action on prohormones takes place later in the secretory pathway. PC1 undergoes an interesting carboxyl terminal processing event whose function appears to be to activate the enzyme. ProPC2, on the other hand, exhibits comparatively long initial folding times and exits the endoplasmic reticulum without propeptide cleavage, in association with the neuroendocrine-specific protein 7B2. Once the proPC2/7B2 complex arrives at the trans-Golgi network, 7B2 is internally cleaved into two domains, the 21kDa fragment and a carboxy-terminal 31 residue peptide. PC2 propeptide removal occurs in the maturing secretory granule, most likely through autocatalysis, and 7B2 association does not appear to be directly required for this cleavage event. However, if proPC2 has not encountered 7B2 intracellularly, it cannot generate a catalytically active mature species. The molecular mechanism behind the intriguing intracellular association of 7B2 and proPC2 is still unknown, but may involve conformational rearrangement or stabilisation of a proPC2 conformer mediated by a 36-residue internal segment of 21kDa 7B2. This family represents, 7B2 (secretogranin V), which is the molecular escort protein for PC2. 7B2 is a bifunctional protein with an N-terminal activation domain and a C-terminal inhibitory domain (MEROPS inhibitor family I21, clan I-) separated by a furin cleavage site []. Although 7B2 represents a potent inhibitor of PC2, there is an absolute requirement of 7B2 for the activation of PC2, which is synthesised as a zymogen. Both the full length, 27 kDa, and the C-terminal peptide (CT domain) derived from intramolecular cleavage of 7B2 are potent inhibitors of PC2. Studies have shown that the active peptide in the CT domain to be LLRVHK, active in the nanomolar range not only against PC2 but also PC1 [, ]. Knock-out studies have shown that the PC2 nulls are not phenotypically equivalent to the 7B2 nulls, which suggests that 7B2 may have other activities in addition to being the activator of PC2 []. 7B2 exhibits both structural and functional homology to proSAAS (IPR010832 from INTERPRO), which is the PC1 binding protein. The CT domain of proSAAS contains the same inhibitor hexapeptide as 7B2, consequently both 7B2 and proSAAS are two members of a homologous family of prohormone convertase inhibitor proteins. ; GO: 0007218 neuropeptide signaling pathway, 0030141 stored secretory granule
Probab=100.00 E-value=2.6e-64 Score=486.91 Aligned_cols=158 Identities=56% Similarity=0.969 Sum_probs=142.4
Q ss_pred HHHHHHHhhccccc---ccccCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcccccccccCCCccce
Q psy11331 220 LREVVDKMGRDLAD---AYFDLPDLDSTNQNGRATDVDKDFDAVNPQTGFDYPESNNSPGHSPSLRDQEYLQQSSLWGHQ 296 (780)
Q Consensus 220 LrelvnrMgkDl~d---~YlD~~~~dr~~~~~s~a~v~kdl~~v~eql~~dy~rl~~~~Np~PSlRDqEylqHSsLwGhQ 296 (780)
++|||+||++||+. +|+. ++.+.+|+.++.++++++++ +++||+||+|||+|++|||||
T Consensus 1 ~~~l~~~m~~~l~~a~~~~~~-----~~~D~~s~~~~~~~~~~~~e-------------~~~~s~Rd~E~l~hssLwG~q 62 (208)
T PF05281_consen 1 MTELLNRMGNDLAAAADSYLP-----RNVDRVSESEYARLLDGVME-------------NPGPSLRDQEYLQHSSLWGHQ 62 (208)
T ss_pred ChHHHHHHHhhhhhhhhhcCc-----cccchhhhHHHHHhhccccc-------------cCCCCccccccccccccCCce
Confidence 58999999999988 4444 56777888888999988775 689999999999999999999
Q ss_pred eecCCCCCCCcccCCCCCCCccccccCCCCCCCCCCCCCCCCCCccCCCCcccCccchHHhhHHHHhcccCCCCcccccc
Q psy11331 297 FVQGGAGEGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQAAQECMCDAEHMFA 376 (780)
Q Consensus 297 ~IsGGAGEG~Q~L~P~G~i~N~~~vKTD~~LPAYCnPPNPCPvGYTaeDgCledFENTAeFSReyQa~QdCmCDtEHMF~ 376 (780)
||+||||||.|+|+|+|+|+|+++||||++||||||||||||+|||++|||+++|||||+|||+||++||||||+||||+
T Consensus 63 ~isGGagEG~q~L~~~~~i~n~~~~ktd~~lPaYCnPPNPCPvGyt~~dgCle~fEnTAeFSReyQa~QdC~CD~EHMf~ 142 (208)
T PF05281_consen 63 YISGGAGEGPQHLGPEGNIPNIKIVKTDNNLPAYCNPPNPCPVGYTAEDGCLENFENTAEFSREYQAAQDCMCDTEHMFD 142 (208)
T ss_pred eeeCCCCccchhcCccCCcCcccccccccCCCCCCCCCCCCCCCcccccCcccCCccHHHhhHHHHhcCccCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHH--HhhhHHHHHHH
Q psy11331 377 SVPIPYLLK--MELKLGLLLLL 396 (780)
Q Consensus 377 C~P~~s~~~--~~~~l~~~~~~ 396 (780)
| |...... ++..|+.+|..
T Consensus 143 C-~~~~~~d~~~~~~l~~~~~~ 163 (208)
T PF05281_consen 143 C-PSQENSDSGNNSSLEKFMHE 163 (208)
T ss_pred C-ccccccchhhhhHHHHHhhh
Confidence 9 7544422 67777776544
No 2
>PF05281 Secretogranin_V: Neuroendocrine protein 7B2 precursor (Secretogranin V); InterPro: IPR007945 Mature peptide hormones and neuropeptides are typically synthesised from much larger precursors and require several post-translational processing steps--including proteolytic cleavage--for the formation of the bioactive species. The subtilisin-related proteolytic enzymes that accomplish neuroendocrine-specific cleavages are known as prohormone convertases 1 and 2 (PC1 and PC2), which belong to MEROPS peptidase family S8B. The cell biology of these proteases within the regulated secretory pathway of neuroendocrine cells is complex, and they are themselves initially synthesised as inactive precursor molecules. ProPC1 propeptide cleavage occurs rapidly in the endoplasmic reticulum, yet its major site of action on prohormones takes place later in the secretory pathway. PC1 undergoes an interesting carboxyl terminal processing event whose function appears to be to activate the enzyme. ProPC2, on the other hand, exhibits comparatively long initial folding times and exits the endoplasmic reticulum without propeptide cleavage, in association with the neuroendocrine-specific protein 7B2. Once the proPC2/7B2 complex arrives at the trans-Golgi network, 7B2 is internally cleaved into two domains, the 21kDa fragment and a carboxy-terminal 31 residue peptide. PC2 propeptide removal occurs in the maturing secretory granule, most likely through autocatalysis, and 7B2 association does not appear to be directly required for this cleavage event. However, if proPC2 has not encountered 7B2 intracellularly, it cannot generate a catalytically active mature species. The molecular mechanism behind the intriguing intracellular association of 7B2 and proPC2 is still unknown, but may involve conformational rearrangement or stabilisation of a proPC2 conformer mediated by a 36-residue internal segment of 21kDa 7B2. This family represents, 7B2 (secretogranin V), which is the molecular escort protein for PC2. 7B2 is a bifunctional protein with an N-terminal activation domain and a C-terminal inhibitory domain (MEROPS inhibitor family I21, clan I-) separated by a furin cleavage site []. Although 7B2 represents a potent inhibitor of PC2, there is an absolute requirement of 7B2 for the activation of PC2, which is synthesised as a zymogen. Both the full length, 27 kDa, and the C-terminal peptide (CT domain) derived from intramolecular cleavage of 7B2 are potent inhibitors of PC2. Studies have shown that the active peptide in the CT domain to be LLRVHK, active in the nanomolar range not only against PC2 but also PC1 [, ]. Knock-out studies have shown that the PC2 nulls are not phenotypically equivalent to the 7B2 nulls, which suggests that 7B2 may have other activities in addition to being the activator of PC2 []. 7B2 exhibits both structural and functional homology to proSAAS (IPR010832 from INTERPRO), which is the PC1 binding protein. The CT domain of proSAAS contains the same inhibitor hexapeptide as 7B2, consequently both 7B2 and proSAAS are two members of a homologous family of prohormone convertase inhibitor proteins. ; GO: 0007218 neuropeptide signaling pathway, 0030141 stored secretory granule
Probab=100.00 E-value=1.1e-59 Score=454.74 Aligned_cols=127 Identities=62% Similarity=1.080 Sum_probs=114.2
Q ss_pred hcccccccCCCcccccccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHHhccCCCCC
Q psy11331 647 FWFLMEPSGGAGEGKQLLKPEGSIKNQNQVKTDATLPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQAAQECMCDA 726 (780)
Q Consensus 647 lWghqyvsGGAGEG~Q~LgP~GnIpN~~~vKTdd~LPAYCNPPNPCPvGYTaeDGCLEnFENTAEFSReYQa~QdCmCD~ 726 (780)
|||||||+||||||.|+|+|+|+|||+++|||+++||||||||||||+|||++||||++|||||+|||+||++|+|+||+
T Consensus 58 LwG~q~isGGagEG~q~L~~~~~i~n~~~~ktd~~lPaYCnPPNPCPvGyt~~dgCle~fEnTAeFSReyQa~QdC~CD~ 137 (208)
T PF05281_consen 58 LWGHQYISGGAGEGPQHLGPEGNIPNIKIVKTDNNLPAYCNPPNPCPVGYTAEDGCLENFENTAEFSREYQAAQDCMCDT 137 (208)
T ss_pred cCCceeeeCCCCccchhcCccCCcCcccccccccCCCCCCCCCCCCCCCcccccCcccCCccHHHhhHHHHhcCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCC----------------CCCCCCccccC------CCCCCCCCCCCCCCccccccccCCCc
Q psy11331 727 EHMFACPQEP----------------PQHNPNEIEYS------PFLNPDKNPYLQGDMLPIAAKKGNNV 773 (780)
Q Consensus 727 EHMF~Cp~~s----------------~~~Nkn~l~~~------p~~krsvNPYLQGErLpIAAKKG~~V 773 (780)
||||+||..+ ++|+++.+.+. ...++++||||||||||||||||+++
T Consensus 138 EHMf~C~~~~~~d~~~~~~l~~~~~~~~~~k~lvaKK~~~~~~~~~~~~~NPyLqGe~L~iaAKK~~~~ 206 (208)
T PF05281_consen 138 EHMFDCPSQENSDSGNNSSLEKFMHEGDKHKNLVAKKFHEKKSSRQSRHVNPYLQGERLPIAAKKGGRL 206 (208)
T ss_pred ccccCCccccccchhhhhHHHHHhhhccchhhHHHHHhhccccccccccCCccccCCccchhcccCCCC
Confidence 9999999432 34455555433 22346789999999999999999765
No 3
>KOG4187|consensus
Probab=100.00 E-value=1.6e-46 Score=362.24 Aligned_cols=130 Identities=49% Similarity=0.849 Sum_probs=108.8
Q ss_pred hhcccccccCCCcccccccCCCCCCCccc--c-----ccCCCCCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHH
Q psy11331 646 WFWFLMEPSGGAGEGKQLLKPEGSIKNQN--Q-----VKTDATLPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQA 718 (780)
Q Consensus 646 ~lWghqyvsGGAGEG~Q~LgP~GnIpN~~--~-----vKTdd~LPAYCNPPNPCPvGYTaeDGCLEnFENTAEFSReYQa 718 (780)
+..|-|-|+||||||.|+|.|++|+||++ + +|.|+.||||||||||||+|||.++|||+||||||||||+||+
T Consensus 67 ~s~g~~~i~ggageg~q~ll~~dnf~~~~a~e~~~~ivK~d~~lpaYc~PPNPCPvG~t~eqGCle~fentAeFSRefQa 146 (228)
T KOG4187|consen 67 NSVGPQSIEGGAGEGLQHLLPFDNFPNIVAEETGDNIVKDDSELPAYCDPPNPCPVGKTDEQGCLENFENTAEFSREFQA 146 (228)
T ss_pred cccccccccccccccccccCCccchhhhhhhhcCCCccccccCCcCcCCCCCCCCCCcccccchhhcCccHHHHhHHhhh
Confidence 45688899999999999999999999998 3 7788899999999999999999999999999999999999999
Q ss_pred hccCCCCCcccCCCCCCCC-----CCC---------CCcc----ccCCC------CCCCCCCCCCCCccccccccCCCcc
Q psy11331 719 AQECMCDAEHMFACPQEPP-----QHN---------PNEI----EYSPF------LNPDKNPYLQGDMLPIAAKKGNNVP 774 (780)
Q Consensus 719 ~QdCmCD~EHMF~Cp~~s~-----~~N---------kn~l----~~~p~------~krsvNPYLQGErLpIAAKKG~~Vp 774 (780)
+|||+||+||||+|..+.+ +|+ .|++ .|+.| .++++||||||||||+|+||. .+|
T Consensus 147 ~QdCtCDnEHmFdc~e~~~~dvSa~~qkil~ENslnvNslAKKagy~~m~d~pRrkr~~vNPyLQG~rL~~~~kK~-g~~ 225 (228)
T KOG4187|consen 147 HQDCTCDNEHMFDCEEDYPGDVSAKWQKILLENSLNVNSLAKKAGYEKMKDGPRRKRRSVNPYLQGQRLDNVVKKK-GVP 225 (228)
T ss_pred hcccccchhhccCchhcccchhHHHHHHHHHHcccchhhHHHhcCCccCCCCccccccccCchhcCCcchHHHHhc-CCC
Confidence 9999999999999995432 332 2232 23322 346899999999999777772 355
Q ss_pred cc
Q psy11331 775 KI 776 (780)
Q Consensus 775 ~~ 776 (780)
+|
T Consensus 226 ~f 227 (228)
T KOG4187|consen 226 HF 227 (228)
T ss_pred CC
Confidence 55
No 4
>KOG4187|consensus
Probab=100.00 E-value=2.3e-44 Score=347.43 Aligned_cols=146 Identities=42% Similarity=0.684 Sum_probs=118.1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc--CCCccceeecCCCCCCCcccCCCCCCCccc--c-----
Q psy11331 250 ATDVDKDFDAVNPQTGFDYPESNNSPGHSPSLRDQEYLQQ--SSLWGHQFVQGGAGEGKQLLKPEGSIKNQN--Q----- 320 (780)
Q Consensus 250 ~a~v~kdl~~v~eql~~dy~rl~~~~Np~PSlRDqEylqH--SsLwGhQ~IsGGAGEG~Q~L~P~G~i~N~~--~----- 320 (780)
++++++++++.||+++.-.+| .||+.| .+.+|.|+|+||||||.|+|.|+++++|++ +
T Consensus 37 ~~di~~~~~~g~~d~~dl~sR-------------~ey~~l~d~~s~g~~~i~ggageg~q~ll~~dnf~~~~a~e~~~~i 103 (228)
T KOG4187|consen 37 EADIQRLLHGGMEDLGDLRSR-------------VEYPALQDMNSVGPQSIEGGAGEGLQHLLPFDNFPNIVAEETGDNI 103 (228)
T ss_pred hhhhhhHhhhhhhhhhhhhhh-------------ccccccccccccccccccccccccccccCCccchhhhhhhhcCCCc
Confidence 345578889999998777666 677655 788999999999999999999999999998 3
Q ss_pred ccCCCCCCCCCCCCCCCCCCccCCCCcccCccchHHhhHHHHhcccCCCCccccccCCCCcchHHHhhhHHHHH-HHHhh
Q psy11331 321 VKTDATLPAYCNPPNPCPVGYTAEDGCLEDFENSAEYSRVYQAAQECMCDAEHMFASVPIPYLLKMELKLGLLL-LLCLH 399 (780)
Q Consensus 321 vKTD~~LPAYCnPPNPCPvGYTaeDgCledFENTAeFSReyQa~QdCmCDtEHMF~C~P~~s~~~~~~~l~~~~-~~~~h 399 (780)
||.|+.||||||||||||+|||.|+|||++|||||||||+||++|||+||+||||+| .....-..-.++...+ --.+|
T Consensus 104 vK~d~~lpaYc~PPNPCPvG~t~eqGCle~fentAeFSRefQa~QdCtCDnEHmFdc-~e~~~~dvSa~~qkil~ENsln 182 (228)
T KOG4187|consen 104 VKDDSELPAYCDPPNPCPVGKTDEQGCLENFENTAEFSREFQAHQDCTCDNEHMFDC-EEDYPGDVSAKWQKILLENSLN 182 (228)
T ss_pred cccccCCcCcCCCCCCCCCCcccccchhhcCccHHHHhHHhhhhcccccchhhccCc-hhcccchhHHHHHHHHHHcccc
Confidence 899999999999999999999999999999999999999999999999999999999 4333322211222111 12334
Q ss_pred ---hcCCCCCCCC
Q psy11331 400 ---TALPFGFDDI 409 (780)
Q Consensus 400 ---t~~~f~~~~~ 409 (780)
-|||||.++.
T Consensus 183 vNslAKKagy~~m 195 (228)
T KOG4187|consen 183 VNSLAKKAGYEKM 195 (228)
T ss_pred hhhHHHhcCCccC
Confidence 2488887765
No 5
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=45.15 E-value=14 Score=29.03 Aligned_cols=20 Identities=45% Similarity=1.160 Sum_probs=16.1
Q ss_pred CCCCCCCCCCC----CCCCccCCC
Q psy11331 326 TLPAYCNPPNP----CPVGYTAED 345 (780)
Q Consensus 326 ~LPAYCnPPNP----CPvGYTaeD 345 (780)
.=||-|||.+| ||.||--+.
T Consensus 7 ~CpA~CDpn~~~~C~CPeGyIlde 30 (34)
T PF09064_consen 7 ECPADCDPNSPGQCFCPEGYILDE 30 (34)
T ss_pred cCCCccCCCCCCceeCCCceEecC
Confidence 45899999776 999998754
No 6
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=35.55 E-value=28 Score=26.43 Aligned_cols=20 Identities=40% Similarity=1.012 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy11331 678 TDATLPAYCNPPNPCPVGYT 697 (780)
Q Consensus 678 Tdd~LPAYCNPPNPCPvGYT 697 (780)
..+.-|..|.+-++||.||+
T Consensus 11 ~~~~~~~~C~~~~~CP~~y~ 30 (45)
T PF14625_consen 11 DSNGQPVSCSPDNSCPSGYS 30 (45)
T ss_pred cCCCCeeECcCCCCCCCcCE
Confidence 35667899999999999997
No 7
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=35.31 E-value=23 Score=26.82 Aligned_cols=19 Identities=42% Similarity=1.066 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q psy11331 324 DATLPAYCNPPNPCPVGYT 342 (780)
Q Consensus 324 D~~LPAYCnPPNPCPvGYT 342 (780)
.+.-|..|.+-++||.||+
T Consensus 12 ~~~~~~~C~~~~~CP~~y~ 30 (45)
T PF14625_consen 12 SNGQPVSCSPDNSCPSGYS 30 (45)
T ss_pred CCCCeeECcCCCCCCCcCE
Confidence 4567999999999999996
No 8
>KOG4389|consensus
Probab=24.31 E-value=29 Score=40.03 Aligned_cols=43 Identities=33% Similarity=0.515 Sum_probs=39.0
Q ss_pred chhhhhhhchhhhhhheeeeEE----EEEeeeeeeEeeeeecccccc
Q psy11331 587 DTVRIFMREGIFQTVVKTFNVY----LTIKCREILVSFQYQVGSVGH 629 (780)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 629 (780)
-||-|+.--|=|.+=--+..|| |+.+-+-|+||++|.||..|.
T Consensus 135 ~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGF 181 (601)
T KOG4389|consen 135 LTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGF 181 (601)
T ss_pred ceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceE
Confidence 4688899999999999999998 889999999999999999875
No 9
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=20.58 E-value=62 Score=23.40 Aligned_cols=18 Identities=39% Similarity=1.056 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCCcc
Q psy11331 325 ATLPAYCNPPNPCPVGYT 342 (780)
Q Consensus 325 ~~LPAYCnPPNPCPvGYT 342 (780)
..-|.-|++.++||.||+
T Consensus 10 ~~~~~~C~~~~~CP~g~~ 27 (38)
T smart00289 10 GGSPVRCSPNGSCPSGYS 27 (38)
T ss_pred CCCCeECCCCCCCCCCCE
Confidence 356788999999999996
No 10
>KOG4211|consensus
Probab=14.83 E-value=73 Score=36.52 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred cccchhhhhhhhhhhcccceeee
Q psy11331 443 KLPFSKTRRQLIPMFKKFAEVTR 465 (780)
Q Consensus 443 ~lp~s~~r~~~~~~~~~~~~v~~ 465 (780)
-|||||+.+||..+|++...|+.
T Consensus 110 GLPfscte~dI~~FFaGL~Iv~~ 132 (510)
T KOG4211|consen 110 GLPFSCTEEDIVEFFAGLEIVPD 132 (510)
T ss_pred CCCccCcHHHHHHHhcCCccccc
Confidence 48999999999999999998887
Done!